Your job contains 1 sequence.
>001155
MTGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQ
SSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASV
VANAHFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKP
SISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAIS
NELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQ
PAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVN
YIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGG
KSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELN
SDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL
GILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQ
VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM
GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAE
QSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKK
TCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLS
LHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNV
VLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRML
RTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE
STIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNK
TVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGGRVLPRWSMFSENR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001155
(1136 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 3164 0. 1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 1203 3.9e-125 2
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 1024 6.2e-112 2
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 1033 3.3e-107 2
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 532 1.0e-95 3
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 536 7.4e-95 3
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 530 6.3e-94 3
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 572 2.6e-92 3
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 557 3.4e-92 3
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 562 7.7e-92 2
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 562 8.0e-92 2
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 558 4.8e-91 3
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 906 7.3e-91 1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 558 8.1e-90 4
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 515 1.2e-89 3
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 637 2.4e-89 3
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 515 4.2e-89 3
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 558 9.8e-89 3
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 541 1.9e-88 5
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 515 2.7e-88 3
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 878 6.7e-88 1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 678 5.1e-87 3
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 503 1.6e-85 4
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 840 3.3e-85 2
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 659 6.3e-85 3
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 534 3.6e-84 3
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 649 1.4e-83 3
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 836 1.9e-83 1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 548 1.2e-81 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 807 1.4e-81 2
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 807 1.4e-81 2
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 541 1.8e-80 2
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 665 3.6e-79 2
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 665 3.6e-79 2
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 517 3.9e-79 2
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 525 5.9e-79 2
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 525 5.9e-79 2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 560 5.0e-76 3
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 557 7.6e-76 3
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 480 1.2e-75 3
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 516 1.5e-72 3
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 579 2.3e-72 3
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 459 3.6e-72 4
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 466 1.7e-69 2
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 459 2.8e-69 2
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 696 5.1e-68 1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 465 6.4e-66 2
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 459 3.6e-64 2
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 466 1.7e-63 3
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 459 6.4e-63 2
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 455 8.7e-63 2
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 459 5.2e-62 2
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 409 4.5e-61 4
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 406 6.5e-60 4
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 391 2.0e-57 4
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 389 2.3e-57 4
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 389 8.9e-57 5
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 398 4.1e-56 3
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 372 9.5e-56 3
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 387 2.0e-54 4
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 398 8.4e-54 5
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 377 9.0e-54 4
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 583 2.8e-53 1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 371 3.4e-53 4
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 375 4.9e-51 2
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 370 7.0e-51 2
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 525 7.9e-51 2
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 361 1.4e-50 3
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 330 6.2e-50 3
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 334 4.9e-49 4
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 511 6.0e-48 1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 491 6.1e-47 2
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 491 6.1e-47 2
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s... 441 1.3e-46 2
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 338 7.3e-45 3
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 338 7.1e-43 3
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 338 7.1e-43 3
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 475 2.0e-42 1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 475 2.0e-42 1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 468 1.3e-39 2
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 263 2.9e-32 2
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 263 3.0e-32 2
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 263 3.1e-32 2
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 255 1.1e-31 3
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 400 1.4e-31 3
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 257 4.5e-31 2
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 234 9.1e-31 4
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 242 7.0e-30 2
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 237 7.1e-30 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 232 8.0e-30 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 228 2.1e-29 2
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 330 1.5e-28 1
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 319 2.2e-27 1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 196 5.0e-22 2
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 196 5.0e-22 2
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 200 2.6e-21 2
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic... 248 8.6e-20 1
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 264 1.4e-18 1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 157 1.4e-14 2
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 147 3.6e-13 4
WARNING: Descriptions of 100 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 3164 (1118.8 bits), Expect = 0., P = 0.
Identities = 665/1146 (58%), Positives = 799/1146 (69%)
Query: 7 NFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQ--SSSD 64
N L ++ KAW LSSL ++ Y+RPG++ P++ ND S++ R++ + SS+
Sbjct: 69 NVHTLAHPQISKAWRALSSLSVNN-TYLRPGVTPPIDVGTND-SYSARERSTAKVISSTG 126
Query: 65 GSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDA-GAGKGLRGQNEIKASVVAN 123
GS +S N NV+ R SF S D A K RG NEI+ S +
Sbjct: 127 GSVYSSTRPNLSA-----MNVSGTGRSFHSFPSSVPGDDKIVAEKFPRGNNEIRESEPSC 181
Query: 124 AHFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSI 182
H FGN A Q ES + + +DDD+ILE IDVDQIVMEHYHS+ TP+PS+
Sbjct: 182 THLNGVEKSFGNSAFPAEQF-ESRKACLDDMDDDDILENIDVDQIVMEHYHSTSTPQPSV 240
Query: 183 SRLPSITPNAGNDKFARQDETC-LPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISN 241
S TP +R +E C LPPELCS C+HG KLGLCPE S+H++ MKD+L+AISN
Sbjct: 241 SNFSLRTPPVDRSA-SRLEEECNLPPELCSNCSHGIKLGLCPEASTHVEQMKDVLLAISN 299
Query: 242 ELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSAST-TRTYQYETPQ 300
ELLD+AT+LSP + +LRQERL+L KQIQ LE + + +E QKS F +ST TR +QYETP+
Sbjct: 300 ELLDDATDLSPDRVGQLRQERLRLKKQIQQLENHIRDKESQKSQFLSSTATRIFQYETPK 359
Query: 301 PAVLKIDPIRFDTQVHLYNESE-GYGNWNXXXXXXXXXDRLGVSSYPVEREPFIPKIIKV 359
K+D + D + H+ ++ +WN DR G+SS PVERE ++PKII V
Sbjct: 360 STNYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQYVPKIIDV 419
Query: 360 NYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGG 419
Y EGSND+KWSS +FPWT+KLE NNKKVFGNHSFRPNQREIINATMSG DVFVLMPTGG
Sbjct: 420 TYTEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGG 479
Query: 420 GKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILREL 479
GKSLTYQLPALIC GITLVISPLVSLIQDQIM+LLQANIPA LS MEW EQ +I +EL
Sbjct: 480 GKSLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQEL 539
Query: 480 NSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG 539
NS++ KYKLLYVTPEKVAKSD LLR LE+LN+R LLAR VIDEAHCVSQWGHDFRPDYQ
Sbjct: 540 NSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQS 599
Query: 540 LGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC----EKV 595
LGILKQKFPN PV SVKEDVVQALGLVNC++FRQSFNRPNLW +K
Sbjct: 600 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKC 659
Query: 596 AERLQVGLSYGHFFLLKEFYVVS-LEC----------GHKAAFYHGSIDPAQRAFVQKQW 644
E + + HF Y +S ++C GHKAAFYHGS++P QRAF+Q QW
Sbjct: 660 LEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQW 719
Query: 645 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 704
SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY Y
Sbjct: 720 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGY 779
Query: 705 SDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLL 764
D+IRVKHMISQG +QSP G+NR VA+SGR+LETNTENLLRMV YCEN+V+CRR L
Sbjct: 780 GDYIRVKHMISQGGVDQSPMATGYNR--VASSGRLLETNTENLLRMVRYCENEVECRRFL 837
Query: 765 QLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFR 824
QLVH GEKFDS +CKKTCDNC +S I+KDVT ++LVELVK TG++FSS+HILEV+R
Sbjct: 838 QLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSSAHILEVYR 897
Query: 825 GSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLK 884
GSLNQ VKKHRHETL HGAGKHL+K E SRIL +LV ED L+E+V+KSD+YGSVSS+L+
Sbjct: 898 GSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLQ 957
Query: 885 VNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNE 944
VN +KA L G Q +V++FPS++ K SK T A T P
Sbjct: 958 VNNAKATILFSGSQTIVMKFPSSVKVLKPSKQGATAAKGPLTSEKQSTLPLTTEDAPPK- 1016
Query: 945 VDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIG 1004
D+NLSA +Y++LR LRT LVKEA +GVMAYHIF N+TLQ +S+R+PRT+EELLEING+G
Sbjct: 1017 -DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLG 1075
Query: 1005 KAKVSKYGVRLLETIESTIKEFYKTXXXXXXXXXXX-XXXXXXXXENEAPNANKGDDDDF 1063
KAKVSKYG +LLETIE+T+ E+Y T EN +PN +DDDF
Sbjct: 1076 KAKVSKYGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRRRDENISPNV--AEDDDF 1133
Query: 1064 XXXXXXXXXXXXXXQNKTVEVINHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNNGG 1123
+NK+ EV++ D +LDFD ++ + +GS +P+ G
Sbjct: 1134 EVSPSQSCKKTV--RNKSNEVLHGECIDGDRRGMELDFD-FK---DEDGSEIRPE----G 1183
Query: 1124 RVLPRW 1129
RVLP W
Sbjct: 1184 RVLP-W 1188
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 1203 (428.5 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 292/774 (37%), Positives = 420/774 (54%)
Query: 356 IIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLM 415
+ V G N + +FPW++K+ N+ +FG H FR NQREIIN+T+ G+D FVLM
Sbjct: 491 VFSVANFNGDNSR--FKGNFPWSQKIIDINRSMFGFHVFRENQREIINSTLEGNDTFVLM 548
Query: 416 PTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEI 475
PTGGGKSL YQ+PAL G+T+VISPL+SLI DQ+ L PA LS + ++
Sbjct: 549 PTGGGKSLCYQIPALYQKGLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDV 608
Query: 476 LRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRP 535
+++ S+ K +LLY+TPE+V KSD L+ L +L+ + L +RIVIDEAHCVSQWGHDFRP
Sbjct: 609 YKDIRSNSPKIRLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRP 668
Query: 536 DYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKV 595
DY+ L IL++KFP P+ V+ DV+ L + N + F+QSFNRPNL K
Sbjct: 669 DYKELSILRRKFPKVPILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKK 728
Query: 596 AERLQVGLS-YGHFFLLKE---FYVVS-LECGH----------KAAFYHGSIDPAQRAFV 640
+++ +S + H + Y +S +C + AA YH ++ +RA V
Sbjct: 729 TKQVVDDMSKFIHSTYPDKSGIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKV 788
Query: 641 QKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVL 700
Q W K I +I AT+AFGMGINK DVRFVIHHS+PKS+EGY+QE GRAGRDG S C+L
Sbjct: 789 QANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLL 848
Query: 701 YYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDC 760
Y+S++D +R +I Q+ FT G +S ET ++L +MV+YCEN+ DC
Sbjct: 849 YFSWADKLRNDLLI------QNSFTSGQG-----SSHNTRETR-DSLNKMVNYCENETDC 896
Query: 761 RRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHIL 820
RR LQL +FGE F+ + CKKTCDNC KDVT+ +K LV+ +K G +S+ I+
Sbjct: 897 RRQLQLAYFGENFEKSGCKKTCDNCISTLETTRKDVTEESKNLVKTIKALGSD-TSNLII 955
Query: 821 EVFRGSLNQYV--KKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGS 878
++F+GS + V K + +LHG GK+ K E RIL H ++ D +++E + YG
Sbjct: 956 DIFKGSKGKKVLEKCAQSGITNLHGIGKNWQKHEIERIL-HQLLRDNILKETISQNPYGG 1014
Query: 879 VSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTP 938
S L V S A NL+ ++NV L F S K + S ++ P
Sbjct: 1015 TYSHLSVG-SYADNLLRNQKNVTLSFRST--PAKKTVSAAKKKKSSKNNEDDEEEEDEVP 1071
Query: 939 SQ---PQNEV---DLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPR 992
+ QN+ D NL A+L LR L+ E + +IF T+ + + P+
Sbjct: 1072 TNFVIIQNKTTKTDANLVARL-EKLRQDLALI-----ENIQETYIFSRDTIDDILRVKPK 1125
Query: 993 TEEELLEINGIGKAKVSKYGVRLLETIESTIKE----FYKTXXXXXXXXXXXXXXXXXXX 1048
T +EL + G+ K+ +YG +++ I + + F K+
Sbjct: 1126 TIKELKGLTGLPSQKIDRYGKSIIQAINDFLSDTPYSFDKSSFQKIPFNSTQTSSYFSKS 1185
Query: 1049 ENEAPNANK-GDDDDFXXXXXXXXXXXXXXQNKTVEVINHNEPDSYECVDDLDF 1101
+ P+ + DD +F N TV+ NE +E +DD D+
Sbjct: 1186 SSNPPHVHTISDDSEFDTDTTNFVI-----DNDTVD---ENENFDFE-IDDNDY 1230
Score = 47 (21.6 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 9/57 (15%), Positives = 28/57 (49%)
Query: 44 HSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNN 100
+++N+ ++N + + +++ + ++ NN + + +N N + + SNN
Sbjct: 309 NNNNNNNNNNNNNNNNNNNNSSNNYNNISNNYSNSNNVVYNSNSTNNINNNSNNSNN 365
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 1024 (365.5 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
Identities = 222/572 (38%), Positives = 335/572 (58%)
Query: 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI--- 431
+PW+K++ K F FR NQ E IN T+SG DVF+LMPTGGGKSL YQLPA+I
Sbjct: 501 YPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGG 560
Query: 432 -CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
G+TLVISPL+SL+QDQ+ HL + NIP+ LSG E+++++ L + KLLY
Sbjct: 561 ASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLY 620
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
VTPE +A + + R L+SL R+LLARIVIDEAHCVS WGHDFRPDY+ LG+L+ ++
Sbjct: 621 VTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGI 680
Query: 551 PVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAE---RLQVGLSYGH 607
P VK+D++ L + NC+ + SFNRPNL+ + + + L +S GH
Sbjct: 681 PFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGH 740
Query: 608 FFLLKEFYVVS-LEC-----------GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655
Y +S C G KA YH ++ +R +Q +W II AT
Sbjct: 741 LHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVAT 800
Query: 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
+AFGMG++K DVRFVIHHS PKS+EGY+QE GRAGRDG+ + C+++YSY D + + +I
Sbjct: 801 IAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIM 860
Query: 716 QGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDS 775
G + E + L +++ +CEN DCRR L +FGE FD
Sbjct: 861 SGDGD----------------AETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDK 904
Query: 776 AHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHR 835
HC+K CD C + ++I++D+T+ + + ++L+K + + ++++FRGS + + ++
Sbjct: 905 VHCRKGCDICCEEATYIKQDMTEFSLQAIKLLKSISGKATLLQLMDIFRGSKSAKIVENG 964
Query: 836 HETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSS-VLKVNQSKAHNLI 894
+ L G GK L + ++ R+ HLV E +E+V+ ++ G VS+ V+ Q+ ++++
Sbjct: 965 WDRLEGAGVGKLLNRGDSERLFHHLVSEGVFVEKVE-ANRRGFVSAYVVPGRQTIINSVL 1023
Query: 895 IGRQNVVLRFPSA-----INSTKLSKSDVTPA 921
G++ ++L + +S LS+S PA
Sbjct: 1024 AGKRRIILDVKESSSKPDTSSRSLSRSKTLPA 1055
Score = 101 (40.6 bits), Expect = 6.2e-112, Sum P(2) = 6.2e-112
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 943 NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEING 1002
+E ++++ + L++LR+ L+ V +Y F ++ L ++K++PR +EL EI+G
Sbjct: 1111 SEYEIDVMTRCLKDLKLLRSNLMAIDDSRVSSY--FTDSVLLSMAKKLPRNVKELKEIHG 1168
Query: 1003 IGKAKVSKYGVRLLETIESTIKE 1025
+ K G + L+ I+ I E
Sbjct: 1169 VSNEKAVNLGPKFLQVIQKFIDE 1191
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 1033 (368.7 bits), Expect = 3.3e-107, Sum P(2) = 3.3e-107
Identities = 262/660 (39%), Positives = 357/660 (54%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG SFRPNQ ++INAT+ G+D FVLMPTGGGKSL YQLPA++ G+T+VISPL SLI D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
QI L +I A LSG + + I R+L S KLLYVTPEK++ S L++
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
LN+ ++R VIDEAHCVSQWGHDFRPDY+ LG+LK++FPN P V+ D++
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDIL 912
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC--EKVAERLQVGLSY-----GHF----FLL--KEFY 615
L L NC F SFNR NL +K L Y HF + L KE
Sbjct: 913 AQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSGIIYCLSRKECD 972
Query: 616 VVSLE-C--GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
S + C G +A YH + R QK W ++ +ICATVAFGMGI+KPDVRFV+H
Sbjct: 973 ETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLH 1032
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+SLPKSIEGY+QE GRAGRDG + C+LYY+YSD +R+K M+ A Q +N
Sbjct: 1033 YSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQ---------YN 1083
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHC---KKT-CDNCSKI 788
V + + +NL R+V YCEN DCRR QL +FGE F S C ++T CDNC
Sbjct: 1084 VK------KIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCINK 1137
Query: 789 KSFIEKDVTDTAKKLVELVK--LTGQ-QFSSSHILEVFRGSLNQYVKKHRHETLSLHGAG 845
+++ D + A+K VK +G+ +F+ HI +V +GS + + H HG
Sbjct: 1138 RAYKAVDALEHARKAARAVKDLCSGRSRFTLLHIADVLKGSKIKKIIDFNHHKTPHHGVL 1197
Query: 846 KHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFP 905
K K++ R+LR +VI+ FL E++ ++ + L N SK L+ G N F
Sbjct: 1198 KDWDKNDVHRLLRKMVIDGFLREDLIFTNDFPQAYLYLGNNISK---LMEGTPN----FE 1250
Query: 906 SAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLV 965
A+ TK +K A S D S + + + Y+ L L +
Sbjct: 1251 FAV--TKNAKE--AKAAVGSVSDGATSSTADGQSGMRE-----IHERCYTDLLDLCRTIA 1301
Query: 966 KEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKE 1025
+ V I L+ +++ +P TE+++ I + KA KYG +LLE + E
Sbjct: 1302 SQ--RNVTMASIMNIQALKSMAETLPITEKDMCSIPHVTKANFDKYGAKLLEITSNYASE 1359
Score = 55 (24.4 bits), Expect = 3.3e-107, Sum P(2) = 3.3e-107
Identities = 23/87 (26%), Positives = 43/87 (49%)
Query: 220 GLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAE 279
G P T ++ M+ A +L+ N+ + +Q K QE L+ ++I++ QAE
Sbjct: 405 GFQPNTFLKLKVMRQKFKA-RTQLVQNSLDKKESQL-KAEQEALE-KEEIEM-----QAE 456
Query: 280 ERQKSHFSASTTRTYQYETPQPAVLKI 306
+ Q++ S+S+ + P P V +I
Sbjct: 457 QAQQTVLSSSSPEKSRPIMPLPKVQEI 483
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 532 (192.3 bits), Expect = 1.0e-95, Sum P(3) = 1.0e-95
Identities = 105/227 (46%), Positives = 140/227 (61%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TM+G +VF++MPTGGGKSL
Sbjct: 63 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
+ KL+YVTPEK+AKS + + +LE RI +DE HC SQWGHDFRPDY+ LGILK
Sbjct: 183 ELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 242
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
++FPN + V D + L + C F SFNRPNL+ +
Sbjct: 243 RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYE 289
Score = 308 (113.5 bits), Expect = 1.0e-95, Sum P(3) = 1.0e-95
Identities = 62/143 (43%), Positives = 88/143 (61%)
Query: 600 QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658
Q G+ Y E VSL+ G A YH +++P + V ++WS +EI ++ ATVAF
Sbjct: 315 QSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 374
Query: 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQG 717
GMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD ++ C+LYY + D R+ M+ +
Sbjct: 375 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN 434
Query: 718 VAEQSPFTPGHNRFNVANSGRVL 740
V +Q + N++ RVL
Sbjct: 435 VGQQKLYEMVSYCQNISKCRRVL 457
Score = 174 (66.3 bits), Expect = 1.0e-95, Sum P(3) = 1.0e-95
Identities = 46/157 (29%), Positives = 80/157 (50%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR+L HF E ++S C K CDNC K +F K++T
Sbjct: 431 VMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNIT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ + L++++K + L++ + + K R + L + + +I+
Sbjct: 491 EYCRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGV----VAPTLPREDLEKII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLI 894
H +I+ +L E+ + Y ++S LK+ KA NL+
Sbjct: 547 AHFLIQQYLKEDYSFT-AYATIS-YLKIGP-KA-NLL 579
Score = 52 (23.4 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDML--IAISNELLDNATNLSPAQTEKLRQERLQL 265
+L ++C+ G L +CP S ++D +L + IS +L NA++ S + + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL-MEDQLMVLKQLGISATML-NASS-SKEHVKWVHAEMVNK 180
Query: 266 SKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ +++L+ Y E+ KS F + + Y+
Sbjct: 181 NSELKLI--YVTPEKIAKSKMFMSRLEKAYE 209
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 536 (193.7 bits), Expect = 7.4e-95, Sum P(3) = 7.4e-95
Identities = 137/328 (41%), Positives = 183/328 (55%)
Query: 341 GVSSYPVEREPFIP---KIIKV-N----YIEGSNDQKWSSWDFPWTKKLEANNKKVFGNH 392
G SS ER+ F P K IK N Y ++D ++ ++FP + ++ K FG H
Sbjct: 600 GGSSKSFERKTFTPPAPKSIKTPNPEPLYRNPAHD-RFRGFNFPHSPEMMKIFHKKFGLH 658
Query: 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMH 452
FR NQ E INA++ G D FVLMPTGGGKSL YQLPA + G+T+VISPL SLI DQ+
Sbjct: 659 QFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIVDQVQK 718
Query: 453 LLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAR 512
L +I AT LSG+ + +E I +L+ KLLY TPEKV S ++ L++L R
Sbjct: 719 LTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASGRMISALQNLYER 778
Query: 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALG 572
LLAR+VIDEAHCVSQWGHDFRPDY+ L L++ FPN P+ V++D++ L
Sbjct: 779 GLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALTATATPRVQKDILNQLA 838
Query: 573 LVNCIIFRQSFNRPNLWMDC-----EKVAER-LQVGLSY-----GHFFLLK----EFYVV 617
+ +F SFNR NL +KV E +Q Y G + L +
Sbjct: 839 MTRPQVFTMSFNRNNLKYSVLPKKPKKVDEECIQWIKKYYPRDSGIVYCLSRNDCDTLAD 898
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQW 644
SL+ G A YH + + R +VQ +W
Sbjct: 899 SLQRAGIAALAYHAGLSDSDREYVQNKW 926
Score = 452 (164.2 bits), Expect = 7.4e-95, Sum P(3) = 7.4e-95
Identities = 114/322 (35%), Positives = 178/322 (55%)
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSL 675
SL+ G A YH + + R +VQ +W ++D ++CAT+AFGMGI+KPDVR+VIH SL
Sbjct: 899 SLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGIDKPDVRYVIHASL 958
Query: 676 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVAN 735
PKS+EGY+QE GRAGRDG+ S CVL+YSYSD IR+K +I+ G+ +
Sbjct: 959 PKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMD-------KDGNQQSKA-- 1009
Query: 736 SGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKS 790
T+ NL MV +CEN +CRR+ L +FGE F+++ CK+ CDNC++
Sbjct: 1010 ------THINNLHSMVHFCENVAECRRIQLLAYFGEHTFNTSFCKEHPEVICDNCARPNK 1063
Query: 791 FIEKDVTDTAKKLVELVK----LTGQQFSSSH---------ILEVFRGSLNQYVKKHRHE 837
+ ++VTD KK+ V+ G ++ S ++E+F GS K R +
Sbjct: 1064 YKSRNVTDDVKKIARFVQDNCEKVGNRYGKSAQQNRLTLNMLVEIFLGS-----KSARIQ 1118
Query: 838 TLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQS-KAHNLIIG 896
T + G G +K A R+ + LV+++ LME++ + S +V ++ KA +++ G
Sbjct: 1119 T-GMFGVGAAYSKHNAERLFKKLVLDNVLMEDLY---ITNSGQAVAYISAGPKAMSVLNG 1174
Query: 897 RQNVVLRFPSAINSTKLSKSDV 918
V + +S + ++ V
Sbjct: 1175 CMQVEFHETESASSIRKHRASV 1196
Score = 98 (39.6 bits), Expect = 7.4e-95, Sum P(3) = 7.4e-95
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 964 LVKEAGE--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
L K+ G+ G+ Y+IF ATL+ +++ + E LL+I+G+ + K+ KYG +E ++
Sbjct: 1217 LCKKLGKVFGIHYYNIFSTATLKKIAETLSADPEVLLQIDGVTEDKLEKYGAEFIELLQ 1275
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 530 (191.6 bits), Expect = 6.3e-94, Sum P(3) = 6.3e-94
Identities = 109/229 (47%), Positives = 144/229 (62%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ W+ DFPW +K++ + F FR Q E +NATM+G D+F++MPTGGGKSL YQL
Sbjct: 66 EAWNRTDFPWYEKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQL 125
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGN-----MEWTEQQEILRELNSD 482
PA+ G TLVI PL+SL++DQ+M L Q I AT L+ + ++W Q + R NS
Sbjct: 126 PAVCSDGFTLVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDR--NS- 182
Query: 483 YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGI 542
+ KLLYVTPEK+AKS + + +LE LARI +DE HC SQWGHDFRPDY+ LGI
Sbjct: 183 --QLKLLYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGI 240
Query: 543 LKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
LK++FP P+ V +D L + CI F SFNRPNL+ +
Sbjct: 241 LKRQFPCAPLIGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYE 289
Score = 297 (109.6 bits), Expect = 6.3e-94, Sum P(3) = 6.3e-94
Identities = 54/103 (52%), Positives = 73/103 (70%)
Query: 613 EFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
E VSL+ G KA YH ++D + V K W+ ++I ++ ATVAFGMGI+KPDVRFVI
Sbjct: 328 EQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVATVAFGMGIDKPDVRFVI 387
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714
HHS+ KS+E Y+QE GRAGRD Q++ C+LYY + D R+ M+
Sbjct: 388 HHSMSKSMENYYQESGRAGRDDQKADCILYYGFGDIFRISSMV 430
Score = 170 (64.9 bits), Expect = 6.3e-94, Sum P(3) = 6.3e-94
Identities = 43/148 (29%), Positives = 77/148 (52%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E E L MVSYC+N CRR+L HF E ++SA+C + CDNC + S +KD+T
Sbjct: 431 VMENVGQEKLYDMVSYCQNMNKCRRVLIARHFDEVWESANCNRMCDNCCRENSLEKKDIT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ L+++++ L++ + + K R ++ L + E RI+
Sbjct: 491 GYYRDLIKILEQADNMSEKLTPLKLIDAWSGKGLSKLRVAEVT----PPKLPREELERII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKV 885
HL+++ +L E+ + + ++S LK+
Sbjct: 547 AHLLLQQYLREDFSFT-AFATIS-YLKI 572
Score = 64 (27.6 bits), Expect = 3.5e-37, Sum P(3) = 3.5e-37
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDML--IAISNELLDNATNLSPAQTEKLRQERLQL 265
+L ++C+ G L +CP S ++D +L + IS LL NA++ S + + + L
Sbjct: 124 QLPAVCSDGFTLVICPLISL-MEDQLMVLDQLGISATLL-NASS-SKEHVKWVHAQMLDR 180
Query: 266 SKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ Q++LL Y E+ KS F + + YQ
Sbjct: 181 NSQLKLL--YVTPEKIAKSKMFMSKLEKAYQ 209
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 572 (206.4 bits), Expect = 2.6e-92, Sum P(3) = 2.6e-92
Identities = 115/221 (52%), Positives = 150/221 (67%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+++ S +FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 642 ERFQSLNFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 701
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 702 PACVSPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIK 761
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEKV S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFRPDY+ + IL+QKF
Sbjct: 762 LLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKF 821
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 822 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNL 862
Score = 445 (161.7 bits), Expect = 2.6e-92, Sum P(3) = 2.6e-92
Identities = 117/308 (37%), Positives = 169/308 (54%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ +W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 912 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 971
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+Y+Y D R+K +I + E+ G NR
Sbjct: 972 GYYQESGRAGRDGEISHCILFYTYHDVTRLKRLI---LMEKD----G-NR-------HTR 1016
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGE-KFDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGE +F+ CKK +CDNC K K F KD
Sbjct: 1017 ETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNCYKTKDFKTKD 1076
Query: 796 VTDTAKKLVELVKL-TGQQFSSS--HILEVFRGSLNQYV-----KKHRHETLSLHGAGKH 847
VT+ K +V V+ + Q + + HI R ++N V K + G G
Sbjct: 1077 VTEDVKNIVRFVQEHSSSQGTRNIKHIGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGST 1136
Query: 848 LAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSA 907
++ A R+ + L+++ L E++ + +++ V+ SKA ++ G V F
Sbjct: 1137 YSRHNAERLFKKLILDRILDEDLYINANDQAIAYVML--GSKAQTVLNGHLKV--DFMET 1192
Query: 908 INSTKLSK 915
NS+ + K
Sbjct: 1193 ENSSSVKK 1200
Score = 155 (59.6 bits), Expect = 6.7e-62, Sum P(3) = 6.7e-62
Identities = 69/292 (23%), Positives = 127/292 (43%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGE-KFDSAHCKKTCD-NCSKIKSFIEKDVTD 798
ET+ NL MV YCEN +CRR+ L +FGE +F+ CKK D +C + D
Sbjct: 1017 ETHFNNLYSMVHYCENITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNCYKTKDFKTKD 1076
Query: 799 TAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILR 858
+ + +V+ Q+ SSS +G+ N KH+ S R
Sbjct: 1077 VTEDVKNIVRFV-QEHSSS------QGTRNI----------------KHIGPS--GRFTM 1111
Query: 859 HLVIEDFLMEEVKK--SDVYGSVSSVLKVNQSKAHN-LIIGR---QNVVLRFPSAINSTK 912
+++++ FL + K S ++G S+ + N + LI+ R +++ + +
Sbjct: 1112 NMLVDIFLGSKSAKIQSGIFGKGSTYSRHNAERLFKKLILDRILDEDLYINANDQAIAYV 1171
Query: 913 LSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTL--LVKEAGE 970
+ S + N + + Q + +S + + L L + K G+
Sbjct: 1172 MLGSKAQTVLNGHLKVDFMETENSSSVKKQKALVAKVSQREEVVKKCLGELTEVCKSLGK 1231
Query: 971 --GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
GV ++IF TL+ L++ + E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1232 VFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVIPILQ 1283
Score = 42 (19.8 bits), Expect = 2.6e-92, Sum P(3) = 2.6e-92
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 163 DVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKL 219
D+D +H S+ + + + PN +T L +L + + CKL
Sbjct: 325 DLDTSDKKHSLSTSEDLSKLKEMATQQPNQETSTSCEARQTSLQQQLIRVMDRICKL 381
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 557 (201.1 bits), Expect = 3.4e-92, Sum P(3) = 3.4e-92
Identities = 113/221 (51%), Positives = 148/221 (66%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ + S +FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 650 EHFQSLNFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 709
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 710 PACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIK 769
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEKV S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 770 LLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 829
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 830 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNL 870
Score = 464 (168.4 bits), Expect = 3.4e-92, Sum P(3) = 3.4e-92
Identities = 114/305 (37%), Positives = 166/305 (54%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ +W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 920 GLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSME 979
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S CVL+Y+Y D R+K +I + + + H +
Sbjct: 980 GYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIM--MEKDGNY---HTK---------- 1024
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGEK F+ CKK +CDNC K K + KD
Sbjct: 1025 ETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVSCDNCCKTKDYKTKD 1084
Query: 796 VTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYV-----KKHRHETLSLHGAGKHLAK 850
VTD K ++ V+ + +I R +LN V K + G G ++
Sbjct: 1085 VTDDVKNIIRFVQEHSSSPGTRNIGPAGRFTLNMLVDIFLGSKSAKVKSGIFGKGTTYSR 1144
Query: 851 SEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINS 910
A R+ + L+++ L E++ + ++ V+ +KAH+++ G V F NS
Sbjct: 1145 HNAERLFKKLILDKILDEDLYINANDQPIAYVML--GTKAHSVLSGHLKV--DFMETENS 1200
Query: 911 TKLSK 915
+ + K
Sbjct: 1201 SSIKK 1205
Score = 123 (48.4 bits), Expect = 1.9e-56, Sum P(3) = 1.9e-56
Identities = 69/293 (23%), Positives = 130/293 (44%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT-DT 799
ET+ NL MV YCEN +CRR+ L +FGEK + D C K DV+ D
Sbjct: 1025 ETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNP------DFCKKYP-----DVSCDN 1073
Query: 800 AKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRH 859
K + + + + + + + ++V++H S G +++ A R +
Sbjct: 1074 CCKT--------KDYKTKDVTDDVKNII-RFVQEHS----SSPGT-RNIGP--AGRFTLN 1117
Query: 860 LVIEDFL-MEEVK-KSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSD 917
++++ FL + K KS ++G ++ + N + +I + +L IN+ +
Sbjct: 1118 MLVDIFLGSKSAKVKSGIFGKGTTYSRHNAERLFKKLI--LDKILDEDLYINANDQPIAY 1175
Query: 918 V---TPAXXXXXXXXXXP---SRNDTPSQPQNEVDLNLSAKLYSSLRMLRTL--LVKEAG 969
V T A + N + + Q + +S + + L L + K G
Sbjct: 1176 VMLGTKAHSVLSGHLKVDFMETENSSSIKKQKALVAKVSQREEVVKKCLGELTEVCKLLG 1235
Query: 970 E--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ GV ++IF ATL+ L++ + E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1236 KVFGVHYFNIFNTATLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVIPVLQ 1288
Score = 38 (18.4 bits), Expect = 3.4e-92, Sum P(3) = 3.4e-92
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 255 TEKLRQERLQLSKQIQLLEGYRQAEERQKSH 285
+E+L ++ Q S+ ++ G + + +KSH
Sbjct: 249 SEELTEKDTQESQSLKAHLGAERGDSEKKSH 279
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 562 (202.9 bits), Expect = 7.7e-92, Sum P(2) = 7.7e-92
Identities = 114/221 (51%), Positives = 148/221 (66%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+++ S FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 631 ERFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 690
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 691 PACVSPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIK 750
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEKV S+ LL LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 751 LLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 810
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 811 PSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNL 851
Score = 444 (161.4 bits), Expect = 7.7e-92, Sum P(2) = 7.7e-92
Identities = 115/314 (36%), Positives = 171/314 (54%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ +W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 901 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 960
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+Y+Y D R+K +I + E+ G NR
Sbjct: 961 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI---LMEKD----G-NR-------HTR 1005
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK +CDNC K K + +D
Sbjct: 1006 ETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNCCKTKDYKTRD 1065
Query: 796 VTDTAKKLVELV---------KLTGQ-----QFSSSHILEVFRGSLNQYVKKHRHETLSL 841
VTD K +V V ++ Q +F+ + ++++F GS + ++ +
Sbjct: 1066 VTDDVKNIVRFVQEHSSSQGTRIKNQLGPSGRFTMNMLVDIFLGSKSAKIQS------GI 1119
Query: 842 HGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVV 901
G G ++ A R+ + L+++ L E++ + ++ V+ N KA ++ G V
Sbjct: 1120 FGQGSTYSRHNAERLFKKLILDKILDEDLYINANDQPIAYVMPGN--KAQTVLNGHLKV- 1176
Query: 902 LRFPSAINSTKLSK 915
F NST + K
Sbjct: 1177 -DFIETENSTSIKK 1189
Score = 135 (52.6 bits), Expect = 2.9e-59, Sum P(2) = 2.9e-59
Identities = 72/298 (24%), Positives = 124/298 (41%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKKTCD-NCSKIKSFIEKDVTD 798
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK D +C + D
Sbjct: 1006 ETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNCCKTKDYKTRD 1065
Query: 799 TAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILR 858
+ +V+ Q+ SSS + NQ L +G R
Sbjct: 1066 VTDDVKNIVRFV-QEHSSSQGTRI----KNQ-----------LGPSG---------RFTM 1100
Query: 859 HLVIEDFLMEEVKK--SDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKS 916
+++++ FL + K S ++G S+ + N + +I + +L IN+ +
Sbjct: 1101 NMLVDIFLGSKSAKIQSGIFGQGSTYSRHNAERLFKKLI--LDKILDEDLYINANDQPIA 1158
Query: 917 DVTPAXXXXXXXXXX------PSRNDTPSQPQNEVDLNLSAKLYSSLRMLR------TLL 964
V P + N T + Q L AK+ +++ T +
Sbjct: 1159 YVMPGNKAQTVLNGHLKVDFIETENSTSIKKQKAA---LVAKMSQREEVVKKCLGELTEV 1215
Query: 965 VKEAGE--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
K G+ GV ++IF TL+ L++ + E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1216 CKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVIPILQ 1273
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 562 (202.9 bits), Expect = 8.0e-92, Sum P(2) = 8.0e-92
Identities = 114/221 (51%), Positives = 148/221 (66%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+++ S FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 644 ERFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 703
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 704 PACVSPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIK 763
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEKV S+ LL LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 764 LLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 823
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 824 PSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNL 864
Score = 444 (161.4 bits), Expect = 8.0e-92, Sum P(2) = 8.0e-92
Identities = 115/314 (36%), Positives = 171/314 (54%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ +W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 914 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 973
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+Y+Y D R+K +I + E+ G NR
Sbjct: 974 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI---LMEKD----G-NR-------HTR 1018
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK +CDNC K K + +D
Sbjct: 1019 ETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNCCKTKDYKTRD 1078
Query: 796 VTDTAKKLVELV---------KLTGQ-----QFSSSHILEVFRGSLNQYVKKHRHETLSL 841
VTD K +V V ++ Q +F+ + ++++F GS + ++ +
Sbjct: 1079 VTDDVKNIVRFVQEHSSSQGTRIKNQLGPSGRFTMNMLVDIFLGSKSAKIQS------GI 1132
Query: 842 HGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVV 901
G G ++ A R+ + L+++ L E++ + ++ V+ N KA ++ G V
Sbjct: 1133 FGQGSTYSRHNAERLFKKLILDKILDEDLYINANDQPIAYVMPGN--KAQTVLNGHLKV- 1189
Query: 902 LRFPSAINSTKLSK 915
F NST + K
Sbjct: 1190 -DFIETENSTSIKK 1202
Score = 135 (52.6 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
Identities = 72/298 (24%), Positives = 124/298 (41%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKKTCD-NCSKIKSFIEKDVTD 798
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK D +C + D
Sbjct: 1019 ETHFNNLYSMVHYCENITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNCCKTKDYKTRD 1078
Query: 799 TAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILR 858
+ +V+ Q+ SSS + NQ L +G R
Sbjct: 1079 VTDDVKNIVRFV-QEHSSSQGTRI----KNQ-----------LGPSG---------RFTM 1113
Query: 859 HLVIEDFLMEEVKK--SDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKS 916
+++++ FL + K S ++G S+ + N + +I + +L IN+ +
Sbjct: 1114 NMLVDIFLGSKSAKIQSGIFGQGSTYSRHNAERLFKKLI--LDKILDEDLYINANDQPIA 1171
Query: 917 DVTPAXXXXXXXXXX------PSRNDTPSQPQNEVDLNLSAKLYSSLRMLR------TLL 964
V P + N T + Q L AK+ +++ T +
Sbjct: 1172 YVMPGNKAQTVLNGHLKVDFIETENSTSIKKQKAA---LVAKMSQREEVVKKCLGELTEV 1228
Query: 965 VKEAGE--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
K G+ GV ++IF TL+ L++ + E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1229 CKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVIPILQ 1286
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 558 (201.5 bits), Expect = 4.8e-91, Sum P(3) = 4.8e-91
Identities = 112/221 (50%), Positives = 148/221 (66%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+++ S FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 642 ERFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 701
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 702 PACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIK 761
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEK+ S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 762 LLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 821
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 822 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNL 862
Score = 448 (162.8 bits), Expect = 4.8e-91, Sum P(3) = 4.8e-91
Identities = 114/308 (37%), Positives = 169/308 (54%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ++W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 912 GLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 971
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+Y+Y D R+K +I + E+ H R
Sbjct: 972 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI---MMEKDG--NHHTR---------- 1016
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK +CDNC K K + +D
Sbjct: 1017 ETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRD 1076
Query: 796 VTDTAKKLVELVK--LTGQQFSS-SHILEVFRGSLNQYV-----KKHRHETLSLHGAGKH 847
VTD K +V V+ + Q + H+ R ++N V K + G G
Sbjct: 1077 VTDDVKSIVRFVQEHSSSQGMRNIKHVGPSGRFTMNMLVDIFLGSKSAKIQSGIFGKGSA 1136
Query: 848 LAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSA 907
++ A R+ + L+++ L E++ + +++ V+ N KA ++ G N+ + F
Sbjct: 1137 YSRHNAERLFKKLILDKILDEDLYINANDQAIAYVMLGN--KAQTVLNG--NLKVDFMET 1192
Query: 908 INSTKLSK 915
NS+ + K
Sbjct: 1193 ENSSSVKK 1200
Score = 149 (57.5 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 71/293 (24%), Positives = 125/293 (42%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKKTCD-NCSKIKSFIEKDVTD 798
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK D +C + D
Sbjct: 1017 ETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRD 1076
Query: 799 TAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILR 858
+ +V+ Q+ SSS +G N KH+ S R
Sbjct: 1077 VTDDVKSIVRFV-QEHSSS------QGMRNI----------------KHVGPS--GRFTM 1111
Query: 859 HLVIEDFLMEEVKK--SDVYGSVSSVLKVNQSKAHN-LIIGR---QNVVLRF-PSAINST 911
+++++ FL + K S ++G S+ + N + LI+ + +++ + AI
Sbjct: 1112 NMLVDIFLGSKSAKIQSGIFGKGSAYSRHNAERLFKKLILDKILDEDLYINANDQAIAYV 1171
Query: 912 KLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTL--LVKEAG 969
L T + N + + Q + +S + + L L + K G
Sbjct: 1172 MLGNKAQT-VLNGNLKVDFMETENSSSVKKQKALVAKVSQREEMVKKCLGELTEVCKSLG 1230
Query: 970 E--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ GV ++IF TL+ L++ + E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1231 KVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQ 1283
Score = 42 (19.8 bits), Expect = 4.8e-91, Sum P(3) = 4.8e-91
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 28 ISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSE--PMNNRQKGSQINFN 84
+ +RN IR L T V+ + +DAS S S DG + P N K ++NF+
Sbjct: 401 LQQRN-IRRKLLTEVDFNKSDASLLGSLWRYRPDSLDGPMEGDSCPTGNSMK--ELNFS 456
Score = 39 (18.8 bits), Expect = 1.0e-90, Sum P(3) = 1.0e-90
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 246 NATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQK 283
+ TN+S A+T LR + + +++ E +Q+
Sbjct: 48 SVTNVSVAKTPVLRNKDVNVTEDFSFSEPLPNTTNQQR 85
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
Identities = 240/678 (35%), Positives = 359/678 (52%)
Query: 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLV 438
K+L K FG + FR Q++ I +T+ GHD FVLMPTG GKSL YQLPA+I PG+T+V
Sbjct: 233 KELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVV 292
Query: 439 ISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
+SPL SLI+DQ M + + I L+ ++ Q++I EL S KLLYVTPEK++
Sbjct: 293 VSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISA 352
Query: 499 SDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXX 558
S L L+ R LLAR VIDEAHCVSQWGHDFRPDY L L++K+ N PV
Sbjct: 353 SGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALT 412
Query: 559 XXXSVK--EDVVQALGLVNCIIFRQSFNRPNLWMDC-EKVA----------ERLQVGLSY 605
+ K D L + N +F SF R NL D K A ++L G S
Sbjct: 413 ATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYPGKS- 471
Query: 606 GHFFLL--KEFYVVSL---ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660
G + L KE V + + G A YH ++ R VQ+ W ++ ++ICAT+AFGM
Sbjct: 472 GIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGM 531
Query: 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAE 720
GI+KPDVRFVIH+SLPKSIEGY+QE GRAGRDG S C++ YSY D IR++ MI +G
Sbjct: 532 GIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEG--- 588
Query: 721 QSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCK- 779
N R + N N+L++V+YCEN CRR + + HFGE +D C+
Sbjct: 589 -----------NTTTGVRSMHLN--NVLQVVAYCENVSVCRRKMLVEHFGEVYDEQSCRN 635
Query: 780 -KT-CDNCSKIKSFIEK----DVTDTAKKLVELVKLTGQQFSSSHILEVFRGSL----NQ 829
KT CD C + + E DV+ A +++ + Q+ + +I E++RG+L +
Sbjct: 636 SKTPCDICERQRKNAEAIRLFDVSTDALSILKCLPRM-QKATLKYISELYRGALIKKSQE 694
Query: 830 YVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKK-SDVYGSVSSVLKVNQS 888
+ H L + G+ +++ +A R +R LVIE ++ E + + +V + ++ ++
Sbjct: 695 QAMRLGHTKLPFYSKGQGMSEQDALRFVRKLVIEGYIHERLYSVPNQAAAVFAYAELTEA 754
Query: 889 KAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLN 948
+L G++ + + + + K+ A S + +
Sbjct: 755 -GRDLANGKKTAKV-YLHIVTCERKRKN----AGLIELSNMNIVSEAQALKERHMVKHGD 808
Query: 949 LSAKLYSSLRMLRTLLVKEAG-EGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAK 1007
+ + L L T + + +G G Y I ++ ++ +PRT +LL I+ + + K
Sbjct: 809 VFTRCLQDLTHLITAVAESSGLSG--PYSIVSREGIEQIAALLPRTNSDLLRIDSMTQIK 866
Query: 1008 VSKYGVRLLETIESTIKE 1025
V+KYG ++E + + K+
Sbjct: 867 VTKYGRLIMELLATYWKQ 884
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 558 (201.5 bits), Expect = 8.1e-90, Sum P(4) = 8.1e-90
Identities = 112/221 (50%), Positives = 148/221 (66%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+++ S FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 642 ERFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 701
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 702 PACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIK 761
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEK+ S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 762 LLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 821
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 822 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNL 862
Score = 421 (153.3 bits), Expect = 8.1e-90, Sum P(4) = 8.1e-90
Identities = 95/202 (47%), Positives = 124/202 (61%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ++W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 912 GLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 971
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+Y+Y D R+K +I + E+ H R
Sbjct: 972 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLI---MMEKDG--NHHTR---------- 1016
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGE F+ CKK +CDNC K K + +D
Sbjct: 1017 ETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKTKDYKTRD 1076
Query: 796 VTDTAKKLVELVKLTGQQFSSS 817
VTD K +V V Q+ SSS
Sbjct: 1077 VTDDVKSIVRFV----QEHSSS 1094
Score = 57 (25.1 bits), Expect = 8.1e-90, Sum P(4) = 8.1e-90
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 954 YSSLRMLRTLLVKEAG-EGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYG 1012
+SS + +R +K G G ++ + L+ LS P E LL+I+G+ + K+ KYG
Sbjct: 1091 HSSSQGMRN--IKHVGPSGRFTMNMLVDIFLESLSSD-P---EVLLQIDGVTEDKLEKYG 1144
Query: 1013 VRLLETIE 1020
++ ++
Sbjct: 1145 AEVISVLQ 1152
Score = 42 (19.8 bits), Expect = 8.1e-90, Sum P(4) = 8.1e-90
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 28 ISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSE--PMNNRQKGSQINFN 84
+ +RN IR L T V+ + +DAS S S DG + P N K ++NF+
Sbjct: 401 LQQRN-IRRKLLTEVDFNKSDASLLGSLWRYRPDSLDGPMEGDSCPTGNSMK--ELNFS 456
Score = 39 (18.8 bits), Expect = 1.7e-89, Sum P(4) = 1.7e-89
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 246 NATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQK 283
+ TN+S A+T LR + + +++ E +Q+
Sbjct: 48 SVTNVSVAKTPVLRNKDVNVTEDFSFSEPLPNTTNQQR 85
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 515 (186.3 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 122/276 (44%), Positives = 158/276 (57%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG HSFR NQ E INA + G D F+LMPTGGGKSL YQLPA + G+T+VISPL SLI D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L +I AT+L+G++ + + +L+ KLLYVTPEKV S+ LL LE+
Sbjct: 453 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 512
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
L R+LLAR VIDEAHCVSQWGHDFR DY+ L +L++KF + P+ V++D+
Sbjct: 513 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 572
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC-----EKVAERLQVGLSYGHFFLLKEFYVVSL-ECG 622
L ++ +F SFNR NL D +KVA + H Y +S EC
Sbjct: 573 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECD 632
Query: 623 HKAAF----------YHGSIDPAQRAFVQKQWSKDE 648
AA YH + + R VQK+W E
Sbjct: 633 TTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQE 668
Score = 437 (158.9 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 116/312 (37%), Positives = 165/312 (52%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDE-INIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQK+W E +ICAT+AFGMGI+KPDVR+VIH SLPKSIE
Sbjct: 642 GLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIE 701
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+YSYSD R++ +I + E+ + H R
Sbjct: 702 GYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLI---LMEKDGNS--HTR---------- 746
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
+T+ NL MV YCEN VDCRR+ L +FGE F+ CK CDNCS+ K + ++
Sbjct: 747 QTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNCSRKKDYKSRN 806
Query: 796 VTDTAKKLVELVKL-TGQQ--FSSSHILEVFRGSLNQYVK-----KHRHETLSLHGAGKH 847
VTD K ++ V+ GQ + + R +LN V K + G G
Sbjct: 807 VTDEVKSIIRFVQQHCGQMGGINGNRNTGSGRYTLNMMVDIFLGAKSAKIQSGIFGKGAA 866
Query: 848 LAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSA 907
++ R+ R LV++ L E++ + +V+ V V KA ++ G V
Sbjct: 867 YSRHNVERLFRKLVLDKILDEDLYITANDQAVAYV--VLGEKAQAVLNGLLQVEFHETEN 924
Query: 908 INSTKLSKSDVT 919
++ K ++ VT
Sbjct: 925 ASAIKKQRASVT 936
Score = 80 (33.2 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 975 YHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
++IF +TL+ +++ + E LL+I+G+ + K+ KYG +++ ++
Sbjct: 968 FNIFSTSTLKKIAETLSSDAEVLLQIDGVTEDKLEKYGAEIIKVMD 1013
Score = 43 (20.2 bits), Expect = 8.9e-86, Sum P(3) = 8.9e-86
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 966 KEAGEGVMAYHIFG-NATLQHLSKRVPRTEE 995
+EA + V+ FG NA + KR+P + E
Sbjct: 1043 EEAEDDVVTSSYFGGNANQRRKRKRLPNSRE 1073
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 637 (229.3 bits), Expect = 2.4e-89, Sum P(3) = 2.4e-89
Identities = 141/346 (40%), Positives = 205/346 (59%)
Query: 386 KKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSL 445
+ VFG SFRP Q EI++ G D FVLMPTGGGKSL YQ+P+L+ PG+ +VISPL+SL
Sbjct: 10 RTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISPLISL 69
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
++DQ+ L + + A + + E + +L L+ + LLYV PE++ +D L +
Sbjct: 70 MKDQVDALRENGVAAACYNSTLGERESRRVLARLHGG--ELDLLYVAPERLM-TDAFLER 126
Query: 506 LESLNAREL-LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
L RE+ +A IDEAHCVSQWGHDFRP+Y LG L+ FP P+ +
Sbjct: 127 L-----REIPIALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTR 181
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLW---MDCEKVAERLQVGLSY-----GHFFLLKEFYV 616
D+V LGL + +F F+RPN+ ++ +K +L+ L+ G + L V
Sbjct: 182 GDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQKPFRQLEEFLATRPREAGIVYCLSRKRV 241
Query: 617 VSLE-----CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
+ G +A YH + A+R+ VQ+ + +D+I ++ ATVAFGMGI+KP+VRFV+
Sbjct: 242 EEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVRFVV 301
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQG 717
H+ LPK+IE Y+QE GRAGRDG + +L + Y D + +I G
Sbjct: 302 HYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIPVSRSLIESG 347
Score = 168 (64.2 bits), Expect = 2.4e-89, Sum P(3) = 2.4e-89
Identities = 51/157 (32%), Positives = 82/157 (52%)
Query: 750 MVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC-SKIKSFIEKDVTDTAKKLVELVK 808
MV + E V CRR L +FGE+ + C CD C + ++F D T+ A+K + V
Sbjct: 363 MVGFAEALV-CRRRALLGYFGERLEEP-CGN-CDLCLAPPETF---DATEEARKALSCVY 416
Query: 809 LTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLME 868
GQ+F H+++V RGS ++ + H+ LS +G G LA I+R L+ +L +
Sbjct: 417 RVGQRFGVGHVIDVLRGSRSERILALGHDRLSTYGIGASLAAEAWGSIIRQLIHRGYLEQ 476
Query: 869 EVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFP 905
++ Y SVLK+ + A L+ G +++VL P
Sbjct: 477 DLAN---Y----SVLKLTPA-ARPLLRGEESLVLAKP 505
Score = 142 (55.0 bits), Expect = 2.4e-89, Sum P(3) = 2.4e-89
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 932 PSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVP 991
P + P +P +L+ LR LR L + + V Y IF +ATL ++ P
Sbjct: 512 PKKEKAPRRPGAATPAERDEELFQELRALRKRLADD--QQVPPYIIFSDATLAEMASLRP 569
Query: 992 RTEEELLEINGIGKAKVSKYGVRLLETIES 1021
T EELL +NG+G+ K+ +YG LE I S
Sbjct: 570 TTPEELLRVNGVGERKLGRYGAPFLEAIRS 599
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 515 (186.3 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 122/276 (44%), Positives = 158/276 (57%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG HSFR NQ E INA + G D F+LMPTGGGKSL YQLPA + G+T+VISPL SLI D
Sbjct: 631 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 690
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L +I AT+L+G++ + + +L+ KLLYVTPEKV S+ LL LE+
Sbjct: 691 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 750
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
L R+LLAR VIDEAHCVSQWGHDFR DY+ L +L++KF + P+ V++D+
Sbjct: 751 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 810
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC-----EKVAERLQVGLSYGHFFLLKEFYVVSL-ECG 622
L ++ +F SFNR NL D +KVA + H Y +S EC
Sbjct: 811 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECD 870
Query: 623 HKAAF----------YHGSIDPAQRAFVQKQWSKDE 648
AA YH + + R VQK+W E
Sbjct: 871 TTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQE 906
Score = 437 (158.9 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 116/312 (37%), Positives = 165/312 (52%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDE-INIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQK+W E +ICAT+AFGMGI+KPDVR+VIH SLPKSIE
Sbjct: 880 GLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIE 939
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+YSYSD R++ +I + E+ + H R
Sbjct: 940 GYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLI---LMEKDGNS--HTR---------- 984
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
+T+ NL MV YCEN VDCRR+ L +FGE F+ CK CDNCS+ K + ++
Sbjct: 985 QTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNCSRKKDYKSRN 1044
Query: 796 VTDTAKKLVELVKL-TGQQ--FSSSHILEVFRGSLNQYVK-----KHRHETLSLHGAGKH 847
VTD K ++ V+ GQ + + R +LN V K + G G
Sbjct: 1045 VTDEVKSIIRFVQQHCGQMGGINGNRNTGSGRYTLNMMVDIFLGAKSAKIQSGIFGKGAA 1104
Query: 848 LAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSA 907
++ R+ R LV++ L E++ + +V+ V V KA ++ G V
Sbjct: 1105 YSRHNVERLFRKLVLDKILDEDLYITANDQAVAYV--VLGEKAQAVLNGLLQVEFHETEN 1162
Query: 908 INSTKLSKSDVT 919
++ K ++ VT
Sbjct: 1163 ASAIKKQRASVT 1174
Score = 80 (33.2 bits), Expect = 4.2e-89, Sum P(3) = 4.2e-89
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 975 YHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
++IF +TL+ +++ + E LL+I+G+ + K+ KYG +++ ++
Sbjct: 1206 FNIFSTSTLKKIAETLSSDAEVLLQIDGVTEDKLEKYGAEIIKVMD 1251
Score = 43 (20.2 bits), Expect = 3.2e-85, Sum P(3) = 3.2e-85
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 966 KEAGEGVMAYHIFG-NATLQHLSKRVPRTEE 995
+EA + V+ FG NA + KR+P + E
Sbjct: 1281 EEAEDDVVTSSYFGGNANQRRKRKRLPNSRE 1311
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 558 (201.5 bits), Expect = 9.8e-89, Sum P(3) = 9.8e-89
Identities = 114/227 (50%), Positives = 146/227 (64%)
Query: 362 IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGK 421
IE +++ ++FP +K++ K FG H FR NQ E INA + G D F+LMPTGGGK
Sbjct: 588 IENPAHERFRGFNFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGK 647
Query: 422 SLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNS 481
SL YQLP I PG+T+VISPL SLI DQ+ L +IPAT+L+G+ E I +L+
Sbjct: 648 SLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSK 707
Query: 482 DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541
KLLYVTPEKV S L+ +E+L R+LLAR VIDEAHCVSQWGHDFRPDY+ L
Sbjct: 708 KDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLN 767
Query: 542 ILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
+L+QKF + P+ VK+D++ L + IF SFNR NL
Sbjct: 768 VLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNL 814
Score = 424 (154.3 bits), Expect = 9.8e-89, Sum P(3) = 9.8e-89
Identities = 104/268 (38%), Positives = 152/268 (56%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R +VQ +W ++D+ +ICAT+AFGMGI+KPDVR+VIH SLPKS+E
Sbjct: 864 GLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVE 923
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+YSY D R++ +I E+ NS
Sbjct: 924 GYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQM---EKD-----------GNS-HTK 968
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
+T+ NL MV YCEN V+CRR+ L +FGE F+ CK+ CDNC K++ +D
Sbjct: 969 QTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVACDNCLGKKNYKSRD 1028
Query: 796 VTDTAKKLVELVK-----LTGQQFSSSH--------ILEVFRGSLNQYVKKHRHETLSLH 842
VTD +V V+ + G+ S+ ++++F GS K + +T L
Sbjct: 1029 VTDDVGNIVRFVQDNCSLVQGRGKGRSNNTRLTLNMMVDIFLGS-----KSAKIQT-GLF 1082
Query: 843 GAGKHLAKSEASRILRHLVIEDFLMEEV 870
G G ++ A R+ R LV++ + EE+
Sbjct: 1083 GKGAAYSRHNAERLFRKLVLDRIIDEEL 1110
Score = 142 (55.0 bits), Expect = 3.6e-59, Sum P(3) = 3.6e-59
Identities = 69/295 (23%), Positives = 133/295 (45%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK-TCDNCSKIKSFIEKDVTD 798
+T+ NL MV YCEN V+CRR+ L +FGE F+ CK+ T C
Sbjct: 969 QTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVACDNC---------- 1018
Query: 799 TAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSL-HGAGKHLAKSEASRIL 857
KK + S + + G++ ++V+ + SL G GK +S +R+
Sbjct: 1019 LGKK----------NYKSRDVTDDV-GNIVRFVQ----DNCSLVQGRGK--GRSNNTRLT 1061
Query: 858 RHLVIEDFLMEEVKK--SDVYGSVSSVLKVNQSKA-HNLIIGR---QNVVLRF-PSAINS 910
+++++ FL + K + ++G ++ + N + L++ R + + + F A+
Sbjct: 1062 LNMMVDIFLGSKSAKIQTGLFGKGAAYSRHNAERLFRKLVLDRIIDEELYITFNDQAVAY 1121
Query: 911 TKLS-KSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAK--LYSSLRMLRTLLVKE 967
K+ ++ S + Q + V N S + + + T L K
Sbjct: 1122 VKMGERAQAVLNGFLKVDFQDTESASSIRKQKASVVT-NTSQREEMVKKCQAELTELCKR 1180
Query: 968 AGE--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
G+ GV ++IF AT++ +++ + E LL+I+G+ + K+ KYG L++ ++
Sbjct: 1181 LGKIFGVHYFNIFNTATIRRIAESLSPEPEVLLQIDGVTEDKLDKYGAELIDVLQ 1235
Score = 45 (20.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 467 MEWTEQQEILRELNSDYCKYKLLYVTPEKVA 497
++ T+ Q N D KY++L P++VA
Sbjct: 797 LKMTKPQIFTMSFNRDNLKYEVLPKKPKRVA 827
Score = 43 (20.2 bits), Expect = 9.8e-89, Sum P(3) = 9.8e-89
Identities = 15/86 (17%), Positives = 33/86 (38%)
Query: 49 ASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGK 108
A H++ + S S++ F E + N+ + +F + SF+ ++V
Sbjct: 430 AVHDIGTKESENSANSAPNFMEKIGNK---TSFSFRAGGDSIMENSFNFHSSVLSNSRFN 486
Query: 109 GLRGQNEIKASVVANAHFKFSDGFGN 134
+ + I +S + + D N
Sbjct: 487 TPQNEKPISSSTCTRPYSQPIDDMDN 512
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 541 (195.5 bits), Expect = 1.9e-88, Sum P(5) = 1.9e-88
Identities = 110/236 (46%), Positives = 152/236 (64%)
Query: 373 W-DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
W PWTK ++ K+ F FRPNQ E I++T+SG D FVLMPTGGGKSL YQLP++I
Sbjct: 679 WGQHPWTKDVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVI 738
Query: 432 CPG----ITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCK-- 485
G +TLVISPL+SL+QDQ+ HL Q I A ++G+ E+Q I+ L+S +
Sbjct: 739 SSGSTRGVTLVISPLLSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMSTLSSHNPETH 798
Query: 486 YKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQ 545
+LLY+TPE ++KS L ++E L + + LAR+VIDEAHCVSQWGHDFRPDY+ +G +
Sbjct: 799 IELLYITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRA 858
Query: 546 KFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQV 601
+ P P+ +VK DV+ L + C +F QSFNRPNL + + + ++
Sbjct: 859 RIPGVPLMALTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAEL 914
Score = 445 (161.7 bits), Expect = 1.9e-88, Sum P(5) = 1.9e-88
Identities = 98/249 (39%), Positives = 140/249 (56%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 683
KA YH +D RA Q++W ++++I AT+AFGMGI+KPDVRFVIHHS+PKS+EGY+
Sbjct: 955 KAEHYHAGLDAETRARTQQRWQAGDVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYY 1014
Query: 684 QECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETN 743
QE GRAGRDG+RS C LY+S+ D ++ MI + E S + GR
Sbjct: 1015 QETGRAGRDGRRSGCYLYFSHRDVSTMQSMIEKN--EDS---------DDVQKGR----Q 1059
Query: 744 TENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKL 803
T L +V YCEN DCRR+ L +F E F C +CDNC +F +D ++ A
Sbjct: 1060 TRMLNDVVKYCENANDCRRVQILAYFSESFKRQDCNASCDNCKSGDTFEVQDFSEHASAA 1119
Query: 804 VELVKL---TGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHL 860
+++V+ ++ + S+ + +FRG+ + E S G G +A +A R+ R L
Sbjct: 1120 IKIVRYFQERNERATLSYCVNIFRGTTKSFRSPEHREAPSF-GDGSGIAVGDAERLFRKL 1178
Query: 861 VIEDFLMEE 869
E L EE
Sbjct: 1179 HSERALTEE 1187
Score = 53 (23.7 bits), Expect = 1.9e-88, Sum P(5) = 1.9e-88
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 978 FGNATLQHLSKRVPRTEE--ELLEINGIGKAKVSKYGVRLLETIEST 1022
F + L+ + P+ + E+L+I I KV +YG ++L+ + T
Sbjct: 1342 FSDTILREMVMVFPKGKNKGEMLQIPNIDPDKVHRYGDKILKLLRDT 1388
Score = 39 (18.8 bits), Expect = 1.9e-88, Sum P(5) = 1.9e-88
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 592 CEKVAERLQVGLS 604
CEKVAE L+ S
Sbjct: 941 CEKVAEALRTNYS 953
Score = 38 (18.4 bits), Expect = 1.9e-88, Sum P(5) = 1.9e-88
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 51 HNVSRRASLQSSSDGSKFSEPMNNR 75
HN +R+AS +SSS + S+ N+
Sbjct: 107 HNSARKAS-KSSSVRQEVSQTPRNK 130
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 515 (186.3 bits), Expect = 2.7e-88, Sum P(3) = 2.7e-88
Identities = 122/276 (44%), Positives = 158/276 (57%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG HSFR NQ E INA + G D F+LMPTGGGKSL YQLPA + G+T+VISPL SLI D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L +I AT+L+G++ + + +L+ KLLYVTPEKV S+ LL LE+
Sbjct: 453 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 512
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
L R+LLAR VIDEAHCVSQWGHDFR DY+ L +L++KF + P+ V++D+
Sbjct: 513 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 572
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC-----EKVAERLQVGLSYGHFFLLKEFYVVSL-ECG 622
L ++ +F SFNR NL D +KVA + H Y +S EC
Sbjct: 573 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECD 632
Query: 623 HKAAF----------YHGSIDPAQRAFVQKQWSKDE 648
AA YH + + R VQK+W E
Sbjct: 633 TTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQE 668
Score = 424 (154.3 bits), Expect = 2.7e-88, Sum P(3) = 2.7e-88
Identities = 104/263 (39%), Positives = 145/263 (55%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDE-INIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQK+W E +ICAT+AFGMGI+KPDVR+VIH SLPKS+E
Sbjct: 642 GLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVE 701
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+ E GRAGRDG+ S C+L+YSYSD R++ +I + E+ + H R
Sbjct: 702 GYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLI---LMEKDGNS--HTR---------- 746
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCSKIKSFIEKD 795
+T+ NL MV YCEN VDCRR+ L +FGE F+ CK CDNCS K + ++
Sbjct: 747 QTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNCSTKKDYKSRN 806
Query: 796 VTDTAKKLVELVKL-TGQQ--FSSSHILEVFRGSLNQYVKKHRH-ETLSLH----GAGKH 847
VTD K ++ V+ GQ + + R +LN V E+ +H G G
Sbjct: 807 VTDEVKSIIRFVQQHCGQMGGINGNRNTGSGRYTLNMMVDIFLGAESAKIHSGIFGKGAA 866
Query: 848 LAKSEASRILRHLVIEDFLMEEV 870
++ R+ R L ++ L E++
Sbjct: 867 YSRHNVERLFRKLFLDKILDEDL 889
Score = 80 (33.2 bits), Expect = 2.7e-88, Sum P(3) = 2.7e-88
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 975 YHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
++IF +TL+ +++ + E LL+I+G+ + K+ KYG +++ ++
Sbjct: 968 FNIFSTSTLKKIAETLSSDAEVLLQIDGVTEDKLEKYGAEIIKVMD 1013
Score = 41 (19.5 bits), Expect = 3.4e-84, Sum P(3) = 3.4e-84
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 966 KEAGEGVMAYHIFG-NATLQHLSKRVPRTEE 995
+EA + V+ FG NA + KR+P + E
Sbjct: 1043 EEAEDDVVTSSYFGGNANQRRKRKRLPNSGE 1073
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
Identities = 197/520 (37%), Positives = 293/520 (56%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
Q + DF W+K+++ N +F FRP QR IN +MSG D+F++MPTG GKSL YQL
Sbjct: 72 QHYEDSDFSWSKEVQVNLCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSLCYQL 131
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PAL G TLVI+PLVSL++DQ+M+L N+PA L+ + + + IL + +K
Sbjct: 132 PALCSKGFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILAGMTDKNSPFK 191
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEK+AKS +L+ +LE LLARI +DE HC SQWGHDFRPDY+ LGILK++F
Sbjct: 192 LLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQF 251
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWM--------DC-EKVAER 598
PN P+ +V +D + L + + FNRPNL+ DC +++A
Sbjct: 252 PNVPLIGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKDNEDCTDQIASL 311
Query: 599 L------QVGLSYGHFFLLKEFYVVSLECGHK---AAFYHGSIDPAQRAFVQKQWSKDEI 649
+ Q G+ Y F K+ VV+ E + A YH +++P+ ++ V ++WS +I
Sbjct: 312 IRGRYKNQSGIVY--VFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWSSKKI 369
Query: 650 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709
++ ATVAFGMGI+K DVRFVIHH++ KSIE Y+QE GRAGRD + C++++ + D R
Sbjct: 370 QVVVATVAFGMGIDKADVRFVIHHTISKSIENYYQESGRAGRDDSPADCIVFFGFMDIFR 429
Query: 710 VKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHF 769
+ M+ V E N+G+ + L MV+YC+N CRR + +HF
Sbjct: 430 ISTMV---VME--------------NTGQ------QKLHNMVAYCQNVDRCRRAMMAIHF 466
Query: 770 GEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQ 829
E ++ C + CD C +I D+T A+ ++ +V+L L+V L +
Sbjct: 467 DEVWNDEECNEMCDVCRHGNDYITMDITQHARDVLHIVELASSMDEKLTPLKVCDAWLGK 526
Query: 830 YVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEE 869
K R + + L L++ E ++ HL++ + E
Sbjct: 527 GPAKQR-KMIKLTS----LSRLEVESVIIHLLLHGYFRSE 561
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 678 (243.7 bits), Expect = 5.1e-87, Sum P(3) = 5.1e-87
Identities = 155/370 (41%), Positives = 225/370 (60%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
Q ++ D P +++L +VFG FR QRE+I G D V+MPTGGGKSL YQL
Sbjct: 4 QLLNTHDDPLSERLA----QVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQL 59
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PAL+ GIT+V+SPL+SL++DQ+ LLQ + A +L+ + E+LR+L+ + K
Sbjct: 60 PALMMHGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLG--ELK 117
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYV+PE++ +D + R ++SL L+ IDEAHC+SQWGHDFRP+Y LG LKQ F
Sbjct: 118 LLYVSPERLLTADFIER-MQSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLF 172
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL-WMDCEKV--AERLQVGL- 603
P+ P+ + ++++ + LG +N SF+RPN+ + EK+ A +L+ L
Sbjct: 173 PHVPMMALTATADQATRQNICERLG-INPFKLLSSFDRPNIRYTVAEKLNAANQLRQFLL 231
Query: 604 ----SYGHFFLLKEFYV------VSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIIC 653
S G + V ++L+ G A YH + P +R VQ + KD+I+I+
Sbjct: 232 QQNGSSGIIYCSSRRRVDEVAERLTLQ-GFHAKAYHAGMTPEERGEVQDSFLKDQIDIVV 290
Query: 654 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713
ATVAFGMGINK +VRFV+H+ +PKSIE Y+QE GRAGRDG + + + +D RV+H+
Sbjct: 291 ATVAFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHL 350
Query: 714 ISQGVAEQSP 723
I Q +E P
Sbjct: 351 IEQ--SEPGP 358
Score = 131 (51.2 bits), Expect = 5.1e-87, Sum P(3) = 5.1e-87
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 942 QNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEIN 1001
Q+ V LN KL++ L+ LR + +E + V Y +F +ATL ++ +P + E+L +N
Sbjct: 525 QSRVPLNYDRKLFARLKTLRREIAEE--QDVPPYLVFNDATLAEMAAMMPTSPGEMLAVN 582
Query: 1002 GIGKAKVSKYGVRLLETI 1019
G+G+ K+S++G L+ I
Sbjct: 583 GVGERKLSRFGGEFLDEI 600
Score = 112 (44.5 bits), Expect = 5.1e-87, Sum P(3) = 5.1e-87
Identities = 31/113 (27%), Positives = 57/113 (50%)
Query: 750 MVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEK-DVTDTAKKLVELVK 808
M ++ E CRR + L+H+ FD + + C NC ++ + ++ A+K++ +
Sbjct: 370 MAAFAEAQT-CRRQV-LLHY---FDES-ALEPCGNCDICLDPPKRYNGSEDAQKVLSCIY 423
Query: 809 LTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLV 861
GQ+F +H++EV RGS + H+ LS G GK + ++R L+
Sbjct: 424 RLGQRFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLI 476
Score = 40 (19.1 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 156 DEILETIDVDQIVMEHYHSSCTPK 179
DE+ E + + + YH+ TP+
Sbjct: 249 DEVAERLTLQGFHAKAYHAGMTPE 272
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 503 (182.1 bits), Expect = 1.6e-85, Sum P(4) = 1.6e-85
Identities = 105/235 (44%), Positives = 139/235 (59%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ WS F W + + VFG +R NQ+EIINA M+G DV V+M GGGKSL YQL
Sbjct: 65 ENWSE-TFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQL 123
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA++ G TLV+SPL+SLIQDQ+M L I A L+ ++ + + L K
Sbjct: 124 PAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLK 183
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
+LYVTPEKV+KS + +LE + L+ I IDEAHC SQWGHDFRPDY+ L ILK +F
Sbjct: 184 ILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQF 243
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVG 602
P P+ V+ D+++ L + C+ F S NRPNL+ V E+ VG
Sbjct: 244 PKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYS---VREKSAVG 295
Score = 275 (101.9 bits), Expect = 1.6e-85, Sum P(4) = 1.6e-85
Identities = 52/95 (54%), Positives = 66/95 (69%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E G A +YH +D R V +WSK+++ +I TVAFGMGINKPDVRFVIHHSL KS+
Sbjct: 335 ERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSM 394
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714
E Y+QE GRAGRDG S C+L++ +D R M+
Sbjct: 395 ETYYQESGRAGRDGLPSECILFFRSADVPRQSSMV 429
Score = 139 (54.0 bits), Expect = 1.6e-85, Sum P(4) = 1.6e-85
Identities = 47/175 (26%), Positives = 81/175 (46%)
Query: 745 ENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLV 804
+NL +V YC++ CRR HFGE S C CDNC+ E DV+D +K +V
Sbjct: 437 QNLYDIVRYCQSKTKCRRSAFFRHFGEP--SQDCNGMCDNCALSSEVKEVDVSDLSKLVV 494
Query: 805 ELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIED 864
+V+ T Q + + G +++H+ L L + E ++ L+++
Sbjct: 495 SMVQET--QAKDQRVTMLQLGDK----LRNKHKDLIAE-----LKRDEVEHLVIKLIVDS 543
Query: 865 FLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVT 919
L EE + + Y S ++ + + A+ L+ GR+ + + S TK K +T
Sbjct: 544 VLKEEFQHTP-Y-STNAYVTMGPL-ANQLLQGRKTIKMETSS--RQTKKLKRSIT 593
Score = 72 (30.4 bits), Expect = 1.6e-85, Sum P(4) = 1.6e-85
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 954 YSSLRMLRTLLVKE--AGEG-VMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSK 1010
+S L + L KE A +G ++ + + + +S + P + +EL I IGK K K
Sbjct: 594 FSGLELKLDELRKEISAADGSILPHTVLSTQQIGSISSQKPVSLQELESI--IGKLKTEK 651
Query: 1011 YGVRLLETI 1019
YG R+LE +
Sbjct: 652 YGDRILEEV 660
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 840 (300.8 bits), Expect = 3.3e-85, Sum P(2) = 3.3e-85
Identities = 192/502 (38%), Positives = 283/502 (56%)
Query: 434 GITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493
G T+VISPL+SL+QDQ+ HLL NI A+ S ++++ + L+Y++P
Sbjct: 723 GTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLD--LVYISP 780
Query: 494 EKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVX 553
E ++ S+ R + L A LARIV+DEAHCVS WGHDFRPDY+ L K+++P+ P+
Sbjct: 781 EMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMI 840
Query: 554 XXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD------------CEKVAERL-- 599
V+ D++ L L + +QSFNR NL+ + C+ V R
Sbjct: 841 ALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKN 900
Query: 600 QVGLSYGHFFLLKEFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658
Q G+ Y H E ++ G K A+YH ++P +R VQK W DEI +ICATVAF
Sbjct: 901 QTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAF 960
Query: 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGV 718
GMGI+KPDVRFV H ++P+++EGY+QE GRAGRDG S C+ Y+S+ D ++ MI +
Sbjct: 961 GMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDK 1020
Query: 719 AEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHC 778
N+ + E + L ++++YC+N DCRR L L +F E FDS C
Sbjct: 1021 -------------NLDRENK--EKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSKLC 1065
Query: 779 KKTCDNCSKIKSFI--EKDVTDTAKKLVELVK-LTGQQFSSSHILEVFRGSLNQYVKKHR 835
K CDNC + I E+DVT+ AKK+V+LV+ + ++ + + +VF+GS + + +
Sbjct: 1066 HKNCDNCRNSANVINEERDVTEPAKKIVKLVESIQNERVTIIYCQDVFKGSRSSKIVQAN 1125
Query: 836 HETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLII 895
H+TL HG GK + KSE RI HL+ L +E + G SS +KV + A L+
Sbjct: 1126 HDTLEEHGIGKSMQKSEIERIFFHLITIRVL-QEYSIMNNSGFASSYVKVGPN-AKKLLT 1183
Query: 896 GRQNVVLRFP-SAINSTKLSKS 916
G+ + ++F SA NS + S
Sbjct: 1184 GKMEIKMQFTISAPNSRPSTSS 1205
Score = 481 (174.4 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 102/252 (40%), Positives = 146/252 (57%)
Query: 348 EREPFIPKIIKVNYIEGSN-DQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATM 406
E + F + + SN K + +PW+ ++ +VF FRPNQ E +NAT+
Sbjct: 632 EEDDFDDDFSLSDIVSKSNLSSKTNGPTYPWSDEVLYRLHEVFKLPGFRPNQLEAVNATL 691
Query: 407 SGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQANIPATF 462
G DVFVLMPTGGGKSL YQLPA++ G T+VISPL+SL+QDQ+ HLL NI A+
Sbjct: 692 QGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASM 751
Query: 463 LSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDE 522
S ++++ + L+Y++PE ++ S+ R + L A LARIV+DE
Sbjct: 752 FSSRGTAEQRRQTFNLFINGLLD--LVYISPEMISASEQCKRAISRLYADGKLARIVVDE 809
Query: 523 AHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQS 582
AHCVS WGHDFRPDY+ L K+++P+ P+ V+ D++ L L + +QS
Sbjct: 810 AHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLELKEPVFLKQS 869
Query: 583 FNRPNLWMDCEK 594
FNR NL+ + K
Sbjct: 870 FNRTNLYYEVNK 881
Score = 50 (22.7 bits), Expect = 3.3e-85, Sum P(2) = 3.3e-85
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 32 NYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNN 74
N RP +++ + +ND+S N+ R + +S D S + + N
Sbjct: 132 NTFRPHMASSLV--ENDSSRNLGSRNNNKSVIDNSSIGKQLEN 172
Score = 38 (18.4 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 987 SKRVPRTEEELLEINGIGKA 1006
S ++ + + LE +GIGK+
Sbjct: 1118 SSKIVQANHDTLEEHGIGKS 1137
Score = 37 (18.1 bits), Expect = 6.1e-39, Sum P(3) = 6.1e-39
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 43 EHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQI 81
E+ D + +N + S SD +F E NR + + I
Sbjct: 553 ENEDFEEDNN-NNGIEYLSDSDLERFDEERENRTQVADI 590
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 659 (237.0 bits), Expect = 6.3e-85, Sum P(3) = 6.3e-85
Identities = 147/353 (41%), Positives = 206/353 (58%)
Query: 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLV 438
K LE ++ FG +FRP Q +IIN+ ++G D FVLMPTGGGKSL YQ+PAL+ G+ +V
Sbjct: 4 KALEVL-RQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGIV 62
Query: 439 ISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
+SPL+SL+QDQ+ L A + + E ++ L L+++ + LLY+ PE++
Sbjct: 63 VSPLISLMQDQVQALNANGAAAALYNSTLTEAEARKNLARLHNN--ELDLLYIAPERLMT 120
Query: 499 SDVLLRQLESLNAREL-LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXX 557
L R RE+ LA + IDEAHCVSQWGHDFRP+Y LG L++ FP P
Sbjct: 121 ESFLSR------LREVKLALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPKVPFIALTA 174
Query: 558 XXXXSVKEDVVQALGLVNCIIFRQSFNRPNL---WMDCEKVAERLQVGLS-----YGHFF 609
++D++Q L L + SFNRPN+ ++ +K +L L +G +
Sbjct: 175 TADKQTRQDILQRLRLTKANVHIASFNRPNIRYTLLEKQKSYNQLVNFLKDRKADFGIVY 234
Query: 610 LLK----EFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664
L E L+ G+ A YH + AQR Q+ + +D++NII AT+AFGMGI+K
Sbjct: 235 CLSRNRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMGIDK 294
Query: 665 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQG 717
P+VRFV+H+ LPK IEGY+QE GRAGRDG S +L Y D +K I G
Sbjct: 295 PNVRFVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVIKSFIENG 347
Score = 132 (51.5 bits), Expect = 6.3e-85, Sum P(3) = 6.3e-85
Identities = 38/146 (26%), Positives = 77/146 (52%)
Query: 760 CRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHI 819
CRR + L +F E + C CD C + S + T A+K + V +++ +++
Sbjct: 372 CRRRVLLNYFNESL-TEDCGN-CDIC--LNSPETYNGTIEAQKALSCVYRVRERYGVNYV 427
Query: 820 LEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSV 879
++V RG + +K+ H+ LS +G GK L+++E + R L+ +L +++ Y
Sbjct: 428 IDVLRGKDDPRIKRAGHDRLSTYGIGKELSQNEWYSVFRQLIHLGYLEQDLAN---Y--- 481
Query: 880 SSVLKVNQSKAHNLIIGRQNVVLRFP 905
S+L++ AH+++ G++ ++L P
Sbjct: 482 -SILRLTPL-AHSILRGKETLILAKP 505
Score = 112 (44.5 bits), Expect = 6.3e-85, Sum P(3) = 6.3e-85
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSK 1010
A L+ LR LR + +E+ V + IF +A+L ++ R+P ++ E L ING+G+ K+
Sbjct: 530 AALFEKLRELRKAIARESR--VAPFIIFSDASLVEMASRLPVSDSEFLAINGVGQKKLEN 587
Query: 1011 YGVRLLETI 1019
YG L I
Sbjct: 588 YGKLFLHLI 596
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 534 (193.0 bits), Expect = 3.6e-84, Sum P(3) = 3.6e-84
Identities = 106/227 (46%), Positives = 140/227 (61%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + +F FR Q E IN TMSG DVF++MPTGGGKSL
Sbjct: 63 SSPAAWNKEDFPWSSKVKDVLQNIFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMINKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
K KL+YVTPEK+AKS + + +LE RI +DE HC S WGHDFRPDY+ LGILK
Sbjct: 183 KLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILK 242
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
++FPNT + V +D + L + C F SFNRPNL+ +
Sbjct: 243 RQFPNTALMGLTATATSHVLKDAQKILCVGKCFTFTASFNRPNLYYE 289
Score = 327 (120.2 bits), Expect = 3.6e-84, Sum P(3) = 3.6e-84
Identities = 71/172 (41%), Positives = 99/172 (57%)
Query: 600 QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658
Q G+ Y E VSL+ G +A YH +++P + V ++WS +EI ++ ATVAF
Sbjct: 315 QSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAF 374
Query: 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQG 717
GMGI+KPDVRF+IHHS+ KSIE Y+QE GRAGRD ++ C+LYY + D R+ M+ +
Sbjct: 375 GMGIDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN 434
Query: 718 VAEQSPFTPGHNRFNVANSGRVL------ET-NTENLLRMVSYCENDVDCRR 762
V +Q + N++ RVL E N E RM C D+ C R
Sbjct: 435 VGQQKLYEMVSYCQNISKCRRVLIAQHFDEVWNAEACNRMCDNCCKDISCER 486
Score = 162 (62.1 bits), Expect = 7.2e-67, Sum P(3) = 7.2e-67
Identities = 48/164 (29%), Positives = 82/164 (50%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR+L HF E +++ C + CDNC K S K+VT
Sbjct: 431 VMENVGQQKLYEMVSYCQNISKCRRVLIAQHFDEVWNAEACNRMCDNCCKDISCERKNVT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ LV+++K L++ + + K R + A L + + +I+
Sbjct: 491 AHCRDLVKILKQAEDLNEKLTPLKLIDSWMGKGAAKLRVAGV----APPKLPREDLEKII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVV 901
HL+++ +L E+ + Y ++S LK+ KA NL+ +V+
Sbjct: 547 AHLLLQQYLKEDYSFT-AYATIS-YLKIGP-KA-NLLNNEAHVI 586
Score = 52 (23.4 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDML--IAISNELLDNATNLSPAQTEKLRQERLQL 265
+L ++C+ G L +CP S ++D +L + IS +L NA++ S + + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL-MEDQLMVLKQLGISATML-NASS-SKEHVKWVHAEMINK 180
Query: 266 SKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ +++L+ Y E+ KS F + + Y+
Sbjct: 181 NSKLKLI--YVTPEKIAKSKMFMSRLEKAYE 209
Score = 43 (20.2 bits), Expect = 3.6e-84, Sum P(3) = 3.6e-84
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 237 IAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQY 296
I+ E LD+ TN A ++ QE L+ +Q +L++ R K H AS
Sbjct: 4 ISALTEELDSITNELHAVDIQI-QELLE--RQQELIQKKNILTNRIKQHLEASDVGESSE 60
Query: 297 ETPQPAVLKIDPIRFDTQV 315
PA + + ++V
Sbjct: 61 SDSSPAAWNKEDFPWSSKV 79
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 649 (233.5 bits), Expect = 1.4e-83, Sum P(3) = 1.4e-83
Identities = 156/391 (39%), Positives = 227/391 (58%)
Query: 381 LEANNKKV----FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGIT 436
LE+ K+V FG FRP Q EII+ +SG D V+MPTGGGKSL YQ+PAL+ G+T
Sbjct: 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLT 68
Query: 437 LVISPLVSLIQDQIMHLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEK 495
+V+SPL+SL++DQ+ L QAN + A L+ +Q E++ + + +LLY+ PE+
Sbjct: 69 VVVSPLISLMKDQVDQL-QANGVAAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPER 125
Query: 496 VAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXX 555
+ D L L N LLA +DEAHC+SQWGHDFRP+Y LG L+Q+FP P
Sbjct: 126 LML-DNFLEHLAHWNP-VLLA---VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180
Query: 556 XXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL-WMDCEK----------VAE-RLQVGL 603
+ ++D+V+ LGL + +I SF+RPN+ +M EK V E R + G+
Sbjct: 181 TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI 240
Query: 604 SYGHFFLLKEFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662
Y + E L+ G AA YH ++ RA VQ+++ +D++ I+ ATVAFGMGI
Sbjct: 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300
Query: 663 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQS 722
NKP+VRFV+H +P++IE Y+QE GRAGRDG + +L+Y +D ++ + + Q
Sbjct: 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL 360
Query: 723 PFTPGHNRFNVANSGRVLETNTENLLRMVSY 753
H + N G E T L +++Y
Sbjct: 361 QDIERH-KLNAM--GAFAEAQTCRRLVLLNY 388
Score = 121 (47.7 bits), Expect = 1.4e-83, Sum P(3) = 1.4e-83
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 938 PSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEEL 997
P Q N KL++ LR LR + E+ V Y +F +ATL +++++P T E+
Sbjct: 520 PKAMQKSFGGNYDRKLFAKLRKLRKSIADESN--VPPYVVFNDATLIEMAEQMPITASEM 577
Query: 998 LEINGIGKAKVSKYGVRLLETIESTI 1023
L +NG+G K+ ++G + I + +
Sbjct: 578 LSVNGVGMRKLERFGKPFMALIRAHV 603
Score = 121 (47.7 bits), Expect = 1.4e-83, Sum P(3) = 1.4e-83
Identities = 32/125 (25%), Positives = 60/125 (48%)
Query: 737 GRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDV 796
G++ + L M ++ E CRRL+ L +FGE C CD C + D
Sbjct: 358 GQLQDIERHKLNAMGAFAEAQT-CRRLVLLNYFGEGRQEP-CGN-CDICLDPPK--QYDG 412
Query: 797 TDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRI 856
+ A+ + + Q+F +++EV RG+ NQ ++ + H+ L ++G G+ + +
Sbjct: 413 STDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSV 472
Query: 857 LRHLV 861
+R L+
Sbjct: 473 IRQLI 477
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 189/427 (44%), Positives = 247/427 (57%)
Query: 381 LEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVIS 440
LE N +FGN FRP Q + A+M D FVLMPTGGGKSL YQLPA + G+T+VIS
Sbjct: 194 LEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVIS 253
Query: 441 PLVSLIQDQIMHL-LQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499
PL+SLIQDQI+ L L+ IPATFL+ ++ +L+EL D KLLYVTPEK+A S
Sbjct: 254 PLLSLIQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGS 313
Query: 500 DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXX 559
L L L+ + LLA V+DEAHCVSQWGHDFRPDY+ LG LKQ FP PV
Sbjct: 314 SSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATA 373
Query: 560 XXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC-EKVAE---RLQVGL------SYGHFF 609
SV +DV+++L + + + SF+R NL + K E +LQ L G +
Sbjct: 374 TESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVY 433
Query: 610 LLKEFYVVSL------ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN 663
L + V + +C K +YH + QR VQ++W E+ I+CAT+AFGMGI+
Sbjct: 434 CLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGID 493
Query: 664 KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K DVRFVIH++L K++E Y+QE GRAGRDG ++ C+ Y DF RV M+ G
Sbjct: 494 KADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNM- 552
Query: 724 FTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKT-- 781
+RF A + +M YCE +CRR + L +FGE FD CK +
Sbjct: 553 -----DRFKSAMA---------QAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLN 598
Query: 782 -CDNCSK 787
CDNC +
Sbjct: 599 PCDNCER 605
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 548 (198.0 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 108/227 (47%), Positives = 142/227 (62%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + +F FRP Q E IN TMSG +VF++MPTGGGKSL
Sbjct: 63 SSPASWNKEDFPWSGKVKEVLQNIFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
K KL+YVTPEK+AKS + + +LE RI IDE HC SQWGHDFRPDY+ LGILK
Sbjct: 183 KLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILK 242
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
++FPNT + V +D + L + C F SFNRPNL+ +
Sbjct: 243 RQFPNTSLIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYE 289
Score = 309 (113.8 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 75/208 (36%), Positives = 112/208 (53%)
Query: 600 QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658
Q G+ Y E VSL+ G A YH +++P + V ++WS +EI ++ ATVAF
Sbjct: 315 QSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAF 374
Query: 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQG 717
GMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD ++ C+LYY + D R+ M+ +
Sbjct: 375 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYGFGDIFRISSMVVMEN 434
Query: 718 VAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAH 777
V +Q + N++ RVL + + C N + C + F K +A+
Sbjct: 435 VGQQKLYEMVSYCQNISKCRRVLIAQHFDEVWSPEEC-NKM-CDNCCKDTSFERKNITAY 492
Query: 778 CKKTCDNCSKIKSFIEKDVTDTAKKLVE 805
C+ D +K E + T KL++
Sbjct: 493 CR---DLVKILKQAEELNEKLTPLKLID 517
Score = 175 (66.7 bits), Expect = 1.5e-67, Sum P(2) = 1.5e-67
Identities = 50/164 (30%), Positives = 81/164 (49%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR+L HF E + C K CDNC K SF K++T
Sbjct: 431 VMENVGQQKLYEMVSYCQNISKCRRVLIAQHFDEVWSPEECNKMCDNCCKDTSFERKNIT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ LV+++K + L++ L + K R + A L + + +I+
Sbjct: 491 AYCRDLVKILKQAEELNEKLTPLKLIDSWLGKGAAKLRVAGI----APPTLPREDLEKII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVV 901
H +I+ +L E+ + Y ++S LK+ KA NL+ +V+
Sbjct: 547 AHFLIQQYLKEDYSFT-AYATIS-YLKIGP-KA-NLLNNEAHVI 586
Score = 52 (23.4 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 27/109 (24%), Positives = 52/109 (47%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDML--IAISNELLDNATNLSPAQTEKLRQERLQL 265
+L ++C+ G L +CP S ++D +L + IS +L NA++ S + + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL-MEDQLMVLKQLGISATML-NASS-SKEHVKWVHAEMVNK 180
Query: 266 SKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDTQ 314
+ +++L+ Y E+ KS S YE + + ID + +Q
Sbjct: 181 NSKLKLI--YVTPEKIAKSKMFMSRLEK-AYEARRFTRIAIDEVHCCSQ 226
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 807 (289.1 bits), Expect = 1.4e-81, Sum P(2) = 1.4e-81
Identities = 188/503 (37%), Positives = 285/503 (56%)
Query: 434 GITLVISPLVSLIQDQIMHLLQANIPATFLS---GNMEWTEQQEILRELNSDYCKYKLLY 490
G T+VISPL+SL+QDQ+ HLL NI A S GN + + RE D ++Y
Sbjct: 510 GTTVVISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLD-----IVY 564
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
++PE+ KS+ + + L LAR+VIDEAHC+S WGHDFRPDYQGLG K KFP
Sbjct: 565 LSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKV 624
Query: 551 PVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD-------C-----EKVAER 598
P+ V+ D++ L + + ++ +QSFNR NL+ + C + + R
Sbjct: 625 PIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSR 684
Query: 599 L--QVGLSYGHFFLLKEFYVVSL-ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655
+ G+ Y H E + L E G K +FYH + +R +QK+W +++I +ICAT
Sbjct: 685 FSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICAT 744
Query: 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
+AFGMGI+KPDVRFVIH LP+++EGY+QE GRAGRDG S CV+YY Y D ++++I
Sbjct: 745 IAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQ 804
Query: 716 QGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDS 775
+ E+ ++ SGR E++ L +++ YCEN DCRR L +F E FD
Sbjct: 805 RD--EE-----------LSESGR--ESHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDP 849
Query: 776 AHCKKTCDNCSKIK--SFIEKDVTDTAKKLVELVK-LTGQQFSSSHILEVFRGSLNQYVK 832
A+C K CDNC + +EKD T+ AK +++LVK + +Q + + +VFRG ++ +
Sbjct: 850 ANCHKQCDNCRDYNHVTSVEKDCTEYAKDIIKLVKSIQDEQVTVLYCQDVFRGLSHKKIT 909
Query: 833 KHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLME-EVKKSDVYGSVSSVLKVNQSKAH 891
+ H HG G+ L K++ RI +L+ + ++E V G + +KV ++ A
Sbjct: 910 EAGHHENEYHGKGQSLDKNDVERIFFYLLSQQCIVEYHVMHG---GFATDYVKVGKN-AD 965
Query: 892 NLIIGRQNVVLRFPSAINSTKLS 914
++ G++ +++ F S S S
Sbjct: 966 VVLNGQKKIIISFSSRPGSASNS 988
Score = 472 (171.2 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 101/223 (45%), Positives = 136/223 (60%)
Query: 376 PWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---- 431
P+ ++ + VF SFR NQ E ++AT+S DVFVLMPTGGGKSL YQLPAL+
Sbjct: 448 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 507
Query: 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLS---GNMEWTEQQEILRELNSDYCKYKL 488
G T+VISPL+SL+QDQ+ HLL NI A S GN + + RE D +
Sbjct: 508 TKGTTVVISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLD-----I 562
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
+Y++PE+ KS+ + + L LAR+VIDEAHC+S WGHDFRPDYQGLG K KFP
Sbjct: 563 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 622
Query: 549 NTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
P+ V+ D++ L + + ++ +QSFNR NL+ +
Sbjct: 623 KVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYE 665
Score = 39 (18.8 bits), Expect = 1.4e-81, Sum P(2) = 1.4e-81
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 339 RLGVSSYPVEREPFIPKI 356
R VSS P+ R P IP+I
Sbjct: 314 RTEVSS-PISRVPAIPEI 330
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 807 (289.1 bits), Expect = 1.4e-81, Sum P(2) = 1.4e-81
Identities = 188/503 (37%), Positives = 285/503 (56%)
Query: 434 GITLVISPLVSLIQDQIMHLLQANIPATFLS---GNMEWTEQQEILRELNSDYCKYKLLY 490
G T+VISPL+SL+QDQ+ HLL NI A S GN + + RE D ++Y
Sbjct: 510 GTTVVISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLD-----IVY 564
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
++PE+ KS+ + + L LAR+VIDEAHC+S WGHDFRPDYQGLG K KFP
Sbjct: 565 LSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKV 624
Query: 551 PVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD-------C-----EKVAER 598
P+ V+ D++ L + + ++ +QSFNR NL+ + C + + R
Sbjct: 625 PIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSR 684
Query: 599 L--QVGLSYGHFFLLKEFYVVSL-ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655
+ G+ Y H E + L E G K +FYH + +R +QK+W +++I +ICAT
Sbjct: 685 FSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICAT 744
Query: 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
+AFGMGI+KPDVRFVIH LP+++EGY+QE GRAGRDG S CV+YY Y D ++++I
Sbjct: 745 IAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQ 804
Query: 716 QGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDS 775
+ E+ ++ SGR E++ L +++ YCEN DCRR L +F E FD
Sbjct: 805 RD--EE-----------LSESGR--ESHLAKLRQVIQYCENTTDCRRKQVLQYFNETFDP 849
Query: 776 AHCKKTCDNCSKIK--SFIEKDVTDTAKKLVELVK-LTGQQFSSSHILEVFRGSLNQYVK 832
A+C K CDNC + +EKD T+ AK +++LVK + +Q + + +VFRG ++ +
Sbjct: 850 ANCHKQCDNCRDYNHVTSVEKDCTEYAKDIIKLVKSIQDEQVTVLYCQDVFRGLSHKKIT 909
Query: 833 KHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLME-EVKKSDVYGSVSSVLKVNQSKAH 891
+ H HG G+ L K++ RI +L+ + ++E V G + +KV ++ A
Sbjct: 910 EAGHHENEYHGKGQSLDKNDVERIFFYLLSQQCIVEYHVMHG---GFATDYVKVGKN-AD 965
Query: 892 NLIIGRQNVVLRFPSAINSTKLS 914
++ G++ +++ F S S S
Sbjct: 966 VVLNGQKKIIISFSSRPGSASNS 988
Score = 472 (171.2 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 101/223 (45%), Positives = 136/223 (60%)
Query: 376 PWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---- 431
P+ ++ + VF SFR NQ E ++AT+S DVFVLMPTGGGKSL YQLPAL+
Sbjct: 448 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 507
Query: 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLS---GNMEWTEQQEILRELNSDYCKYKL 488
G T+VISPL+SL+QDQ+ HLL NI A S GN + + RE D +
Sbjct: 508 TKGTTVVISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLD-----I 562
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
+Y++PE+ KS+ + + L LAR+VIDEAHC+S WGHDFRPDYQGLG K KFP
Sbjct: 563 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 622
Query: 549 NTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
P+ V+ D++ L + + ++ +QSFNR NL+ +
Sbjct: 623 KVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYE 665
Score = 39 (18.8 bits), Expect = 1.4e-81, Sum P(2) = 1.4e-81
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 339 RLGVSSYPVEREPFIPKI 356
R VSS P+ R P IP+I
Sbjct: 314 RTEVSS-PISRVPAIPEI 330
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 541 (195.5 bits), Expect = 1.8e-80, Sum P(2) = 1.8e-80
Identities = 107/227 (47%), Positives = 141/227 (62%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TMSG +VF++MPTGGGKSL
Sbjct: 63 SSPASWNKEDFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
K KL+YVTPEK+AKS + + +LE RI +DE HC SQWGHDFRPDY+ LGILK
Sbjct: 183 KLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 242
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
++FPN + V +D + L + C F SFNRPNL+ +
Sbjct: 243 RQFPNASLIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYE 289
Score = 305 (112.4 bits), Expect = 1.8e-80, Sum P(2) = 1.8e-80
Identities = 67/182 (36%), Positives = 102/182 (56%)
Query: 600 QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658
Q G+ Y E +SL+ G A YH +++P + V ++W+ +EI ++ ATVAF
Sbjct: 315 QSGIIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAF 374
Query: 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQG 717
GMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD ++ C+LYY + D R+ M+ +
Sbjct: 375 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN 434
Query: 718 VAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAH 777
V +Q + N+ RVL + + C N + C + + F K +A+
Sbjct: 435 VGQQKLYEMVSYCQNINKCRRVLIAQHFDEVWSPEAC-NKM-CDNCCKEISFERKNVTAY 492
Query: 778 CK 779
C+
Sbjct: 493 CR 494
Score = 170 (64.9 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 51/164 (31%), Positives = 80/164 (48%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR+L HF E + C K CDNC K SF K+VT
Sbjct: 431 VMENVGQQKLYEMVSYCQNINKCRRVLIAQHFDEVWSPEACNKMCDNCCKEISFERKNVT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ L++++K L++ + + K R L A L + + +I+
Sbjct: 491 AYCRDLIKILKQAEDLNEKLTPLKLIDSWMGKGASKLRVAGL----APPTLPREDLEKII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVV 901
H +I+ +L E+ + Y ++S LKV KA NL+ +V+
Sbjct: 547 AHFLIQQYLKEDYSFT-AYATIS-YLKVGP-KA-NLLNNEAHVI 586
Score = 52 (23.4 bits), Expect = 8.4e-24, Sum P(2) = 8.4e-24
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNL---SPAQTEK-LRQERL 263
+L ++C+ G L +CP S M+D L+ + +L +AT L SP + K + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL----MEDQLMVLK-QLGISATMLNASSPKEHVKWVHAEMV 178
Query: 264 QLSKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ +++L+ Y E+ KS F + + Y+
Sbjct: 179 NKNSKLKLI--YVTPEKIAKSKMFMSRLEKAYE 209
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 665 (239.2 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 145/344 (42%), Positives = 210/344 (61%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLI 446
+VFG FR Q+E+I A ++G D V+MPTGGGKSL YQ+PAL+ G+TLVISPL+SL+
Sbjct: 31 EVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLM 90
Query: 447 QDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQL 506
+DQ+ L + A ++ + E I +++ + KLLYV+PE+V ++ + R L
Sbjct: 91 KDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAG--QLKLLYVSPERVLTAEFIER-L 147
Query: 507 ESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKED 566
L LA I +DEAHC+SQWGHDFRP+Y LG LKQ+FPN PV + + D
Sbjct: 148 SHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHD 203
Query: 567 VVQALGLVNCIIFRQSFNRPNL-WMDCEK-----------VAERLQVGLSYGHFFLLKEF 614
++Q L L + SF+RPN+ +M EK +R Q G+ Y E
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEM 263
Query: 615 YVVSLECGH--KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
L CG+ +AA YH +D +RA+VQ+ + +D++ I+ ATVAFGMGINKP+VRFV+H
Sbjct: 264 LTEKL-CGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 322
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716
+P++IE Y+QE GRAGRDG + ++ Y +D ++ M+ +
Sbjct: 323 FDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDE 366
Score = 163 (62.4 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 49/182 (26%), Positives = 85/182 (46%)
Query: 737 GRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC-SKIKSFIEKD 795
G + + L M ++ E CRR + L +FGE D C CD C K F D
Sbjct: 370 GAQKQVESHKLTAMGAFAEAQT-CRRQVLLNYFGEYRDKP-CGN-CDICLDPPKRF---D 423
Query: 796 VTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASR 855
T+ A+K + V Q F +++EV RG N +++H H+ ++ +G G+ +
Sbjct: 424 ATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVS 483
Query: 856 ILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSK 915
I R L+ + L + + ++ S L++ + +A L+ G N+ L P + + +K
Sbjct: 484 IFRQLIHKGMLYQNITRN-------STLQLTE-EARPLLRGEMNIELAVPRLDTAARAAK 535
Query: 916 SD 917
SD
Sbjct: 536 SD 537
Score = 120 (47.3 bits), Expect = 1.2e-74, Sum P(2) = 1.2e-74
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 909 NSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDL---NLSAKLYSSLRMLRTLLV 965
NST + P R DT ++ L N KL++ LR LR +
Sbjct: 501 NSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIA 560
Query: 966 KEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ EG+ Y +F +ATL +++ +P + E+L +NG+G+ K+ KY L+ I+
Sbjct: 561 DD--EGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQ 613
Score = 40 (19.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 338 DRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNH 392
DR + VE+ + ++I+ Y+E Q + KK+E +K+ GNH
Sbjct: 221 DRPNIRYMLVEKHKPVSQVIR--YLETQRGQCGIIYCGS-RKKVEMLTEKLCGNH 272
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 665 (239.2 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 145/344 (42%), Positives = 210/344 (61%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLI 446
+VFG FR Q+E+I A ++G D V+MPTGGGKSL YQ+PAL+ G+TLVISPL+SL+
Sbjct: 31 EVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISLM 90
Query: 447 QDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQL 506
+DQ+ L + A ++ + E I +++ + KLLYV+PE+V ++ + R L
Sbjct: 91 KDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAG--QLKLLYVSPERVLTAEFIER-L 147
Query: 507 ESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKED 566
L LA I +DEAHC+SQWGHDFRP+Y LG LKQ+FPN PV + + D
Sbjct: 148 SHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHD 203
Query: 567 VVQALGLVNCIIFRQSFNRPNL-WMDCEK-----------VAERLQVGLSYGHFFLLKEF 614
++Q L L + SF+RPN+ +M EK +R Q G+ Y E
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGIIYCGSRKKVEM 263
Query: 615 YVVSLECGH--KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
L CG+ +AA YH +D +RA+VQ+ + +D++ I+ ATVAFGMGINKP+VRFV+H
Sbjct: 264 LTEKL-CGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 322
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716
+P++IE Y+QE GRAGRDG + ++ Y +D ++ M+ +
Sbjct: 323 FDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDE 366
Score = 163 (62.4 bits), Expect = 3.6e-79, Sum P(2) = 3.6e-79
Identities = 49/182 (26%), Positives = 85/182 (46%)
Query: 737 GRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC-SKIKSFIEKD 795
G + + L M ++ E CRR + L +FGE D C CD C K F D
Sbjct: 370 GAQKQVESHKLTAMGAFAEAQT-CRRQVLLNYFGEYRDKP-CGN-CDICLDPPKRF---D 423
Query: 796 VTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASR 855
T+ A+K + V Q F +++EV RG N +++H H+ ++ +G G+ +
Sbjct: 424 ATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVS 483
Query: 856 ILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSK 915
I R L+ + L + + ++ S L++ + +A L+ G N+ L P + + +K
Sbjct: 484 IFRQLIHKGMLYQNITRN-------STLQLTE-EARPLLRGEMNIELAVPRLDTAARAAK 535
Query: 916 SD 917
SD
Sbjct: 536 SD 537
Score = 120 (47.3 bits), Expect = 1.2e-74, Sum P(2) = 1.2e-74
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 909 NSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDL---NLSAKLYSSLRMLRTLLV 965
NST + P R DT ++ L N KL++ LR LR +
Sbjct: 501 NSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIA 560
Query: 966 KEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ EG+ Y +F +ATL +++ +P + E+L +NG+G+ K+ KY L+ I+
Sbjct: 561 DD--EGLPPYVVFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQ 613
Score = 40 (19.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 338 DRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNH 392
DR + VE+ + ++I+ Y+E Q + KK+E +K+ GNH
Sbjct: 221 DRPNIRYMLVEKHKPVSQVIR--YLETQRGQCGIIYCGS-RKKVEMLTEKLCGNH 272
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 517 (187.1 bits), Expect = 3.9e-79, Sum P(2) = 3.9e-79
Identities = 103/222 (46%), Positives = 138/222 (62%)
Query: 370 WSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA 429
W+ DFPW K++ + VF FRP Q E IN TM+ D+F++MPTGGGKSL YQLPA
Sbjct: 68 WNKEDFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPA 127
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
L G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ + + KL+
Sbjct: 128 LCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLI 187
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPEK+AKS + + +LE L +DE HC SQWGHDFRPDY+ LGILK++FPN
Sbjct: 188 YVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPN 247
Query: 550 TPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
+ V +DV + L + C+ F SFNRPNL+ +
Sbjct: 248 ASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYE 289
Score = 317 (116.6 bits), Expect = 3.9e-79, Sum P(2) = 3.9e-79
Identities = 71/182 (39%), Positives = 102/182 (56%)
Query: 600 QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658
Q G+ Y E +SL+ G A YH +++P + V QWS +E+ ++ ATVAF
Sbjct: 315 QSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAF 374
Query: 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQG 717
GMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD R+ C+LYY + D R+ M+ +
Sbjct: 375 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSMVVMEN 434
Query: 718 VAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAH 777
V +Q + NV+ RVL + + C N + C + V F +K + H
Sbjct: 435 VGQQKLYEMVSYCQNVSKCRRVLIAQHFDEVWNADAC-NKM-CDNCCKDVSFEKKNVTQH 492
Query: 778 CK 779
C+
Sbjct: 493 CR 494
Score = 163 (62.4 bits), Expect = 6.6e-63, Sum P(2) = 6.6e-63
Identities = 46/149 (30%), Positives = 79/149 (53%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR+L HF E +++ C K CDNC K SF +K+VT
Sbjct: 431 VMENVGQQKLYEMVSYCQNVSKCRRVLIAQHFDEVWNADACNKMCDNCCKDVSFEKKNVT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGA-GKHLAKSEASRI 856
+ L++++K Q + L + ++ ++ K + L + G L + + RI
Sbjct: 491 QHCRDLIKILK---QAEGLNEKLTPLK-LIDAWMGKGAAK-LRVAGVVAPALPREDLERI 545
Query: 857 LRHLVIEDFLMEEVKKSDVYGSVSSVLKV 885
+ H +++ +L E+ + Y ++S LKV
Sbjct: 546 VAHALLQQYLKEDYSFT-AYATIS-YLKV 572
Score = 55 (24.4 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDML--IAISNELLDNATNLSPAQTEKLRQERLQL 265
+L ++C+ G L +CP S ++D +L + IS +L NA++ S + + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL-MEDQLMVLKQLGISATML-NASS-SKEHVKWVHAEMVNK 180
Query: 266 SKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ Q++L+ Y E+ KS F + + Y+
Sbjct: 181 NSQLKLI--YVTPEKIAKSKMFMSRLEKAYE 209
Score = 38 (18.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 20/91 (21%), Positives = 35/91 (38%)
Query: 562 SVKED---VVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSY--GHFFLLKEFYV 616
S+ ED V++ LG+ ++ S W+ E V + Q+ L Y + ++
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFM 201
Query: 617 VSLECGHKAAFYHGSIDPAQRAFVQKQWSKD 647
LE ++A G+ QW D
Sbjct: 202 SRLEKAYEAGRLTGAA--VDEVHCCSQWGHD 230
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 525 (189.9 bits), Expect = 5.9e-79, Sum P(2) = 5.9e-79
Identities = 103/222 (46%), Positives = 139/222 (62%)
Query: 370 WSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA 429
WS DFPW+ K++ + VF FRP Q E +NATM+ D+F++MPTGGGKSL YQLPA
Sbjct: 68 WSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPA 127
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
L G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ + KL+
Sbjct: 128 LCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLI 187
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPEK+AKS + + +LE L + +DE HC SQWGHDFRPDY+ LGILK++FPN
Sbjct: 188 YVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPN 247
Query: 550 TPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
+ V +D + L + C+ F SFNRPNL+ +
Sbjct: 248 ISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYE 289
Score = 307 (113.1 bits), Expect = 5.9e-79, Sum P(2) = 5.9e-79
Identities = 66/169 (39%), Positives = 97/169 (57%)
Query: 613 EFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
E +SL+ G +A YH +++P R V QWS +E+ ++ ATVAFGMGI+KPDVRFVI
Sbjct: 328 EQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVI 387
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQGVAEQSPFTPGHNR 730
HHS+ KS+E Y+QE GRAGRD R+ C+LYY + D R+ M+ + V +Q +
Sbjct: 388 HHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC 447
Query: 731 FNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCK 779
N++ R L + + C N + C + F +K + HC+
Sbjct: 448 QNISKCRRALIAQHFDEVWNADAC-NKM-CDNCCKDDSFEKKNITEHCQ 494
Score = 162 (62.1 bits), Expect = 1.1e-63, Sum P(2) = 1.1e-63
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR L HF E +++ C K CDNC K SF +K++T
Sbjct: 431 VMENVGQQKLYEMVSYCQNISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNIT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ + L++++K L++ + + K R +++ L + + +I+
Sbjct: 491 EHCQALIKILKQAEGLNEKLTPLKLIDAWMGKGAAKFRVAGVAVPA----LPREDLEKII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKV 885
H +++ +L E+ + Y ++S LKV
Sbjct: 547 VHALLQQYLKEDYSFT-AYATIS-YLKV 572
Score = 50 (22.7 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 22/93 (23%), Positives = 47/93 (50%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEK----LRQERL 263
+L ++C+ G L +CP S M+D L+ + +L +AT L+ + +++ + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL----MEDQLMVLQ-QLGISATMLNSSSSKEHVKCVHTEMM 178
Query: 264 QLSKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ ++L+ Y E+ KS F + + Y+
Sbjct: 179 NKNSHLKLI--YVTPEKIAKSKMFMSRLEKAYE 209
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 525 (189.9 bits), Expect = 5.9e-79, Sum P(2) = 5.9e-79
Identities = 103/222 (46%), Positives = 139/222 (62%)
Query: 370 WSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA 429
WS DFPW+ K++ + VF FRP Q E +NATM+ D+F++MPTGGGKSL YQLPA
Sbjct: 68 WSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPA 127
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
L G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ + KL+
Sbjct: 128 LCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLI 187
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPEK+AKS + + +LE L + +DE HC SQWGHDFRPDY+ LGILK++FPN
Sbjct: 188 YVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPN 247
Query: 550 TPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
+ V +D + L + C+ F SFNRPNL+ +
Sbjct: 248 ISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYE 289
Score = 307 (113.1 bits), Expect = 5.9e-79, Sum P(2) = 5.9e-79
Identities = 66/169 (39%), Positives = 97/169 (57%)
Query: 613 EFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
E +SL+ G +A YH +++P R V QWS +E+ ++ ATVAFGMGI+KPDVRFVI
Sbjct: 328 EQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVI 387
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQGVAEQSPFTPGHNR 730
HHS+ KS+E Y+QE GRAGRD R+ C+LYY + D R+ M+ + V +Q +
Sbjct: 388 HHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC 447
Query: 731 FNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCK 779
N++ R L + + C N + C + F +K + HC+
Sbjct: 448 QNISKCRRALIAQHFDEVWNADAC-NKM-CDNCCKDDSFEKKNITEHCQ 494
Score = 162 (62.1 bits), Expect = 1.1e-63, Sum P(2) = 1.1e-63
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR L HF E +++ C K CDNC K SF +K++T
Sbjct: 431 VMENVGQQKLYEMVSYCQNISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNIT 490
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ + L++++K L++ + + K R +++ L + + +I+
Sbjct: 491 EHCQALIKILKQAEGLNEKLTPLKLIDAWMGKGAAKFRVAGVAVPA----LPREDLEKII 546
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKV 885
H +++ +L E+ + Y ++S LKV
Sbjct: 547 VHALLQQYLKEDYSFT-AYATIS-YLKV 572
Score = 50 (22.7 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 22/93 (23%), Positives = 47/93 (50%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEK----LRQERL 263
+L ++C+ G L +CP S M+D L+ + +L +AT L+ + +++ + E +
Sbjct: 124 QLPALCSDGFTLVICPLISL----MEDQLMVLQ-QLGISATMLNSSSSKEHVKCVHTEMM 178
Query: 264 QLSKQIQLLEGYRQAEERQKSH-FSASTTRTYQ 295
+ ++L+ Y E+ KS F + + Y+
Sbjct: 179 NKNSHLKLI--YVTPEKIAKSKMFMSRLEKAYE 209
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 560 (202.2 bits), Expect = 5.0e-76, Sum P(3) = 5.0e-76
Identities = 126/346 (36%), Positives = 190/346 (54%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG SFR Q E I + G D +MPTGGGKS+ YQ+PAL+ G TLVISPL+SL++D
Sbjct: 13 FGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLISLMKD 72
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L+Q I AT+++ ++ TE + ++ + YKL YV PE++ + + QL
Sbjct: 73 QVDTLVQNGISATYINSSISITEANQRIQLAKQGH--YKLFYVAPERLDSME-FVDQLID 129
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTP-VXXXXXXXXXSVKEDV 567
+ + I IDEAHC+SQWGHDFRP Y + + P P V V++D+
Sbjct: 130 MK----IPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATATPQVRDDI 185
Query: 568 VQALGLVNCIIFRQSFNRPNLWMDCEKVAER------------LQVGLSYGHFF-LLKEF 614
LG+ +F R NL K +R + G+ Y ++ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSVIKGQDRNAYLADYIRQNQKESGIIYAATRKVVDQL 245
Query: 615 YVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHS 674
Y ++ G + YH + R Q+ + +DE++++ AT AFGMGI+K ++R+VIH+
Sbjct: 246 YEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYVIHYQ 305
Query: 675 LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAE 720
LPK++E Y+QE GRAGRDG S+C+L Y+ D + +I Q + E
Sbjct: 306 LPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSIGE 351
Score = 140 (54.3 bits), Expect = 5.0e-76, Sum P(3) = 5.0e-76
Identities = 42/157 (26%), Positives = 76/157 (48%)
Query: 745 ENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLV 804
E L M YC + C + L +FGE+ C + C NC+ + I DVT ++ ++
Sbjct: 359 EKLQNMTDYCHTE-QCLQSFILQYFGEE-PKEDCGR-CGNCTDNRESI--DVTRESQMVL 413
Query: 805 ELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIED 864
+ T Q+F I +V GS N+ V + TL +G + + E S + L+ ++
Sbjct: 414 SCMIRTNQRFGKQMIAQVLTGSKNKKVIEFNFHTLPTYGLLSNRSVKEVSEFIEFLISDE 473
Query: 865 FLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVV 901
+ E +G+ + LKV + K +++G++NV+
Sbjct: 474 LIAVE------HGTYPT-LKVTE-KGKEVLLGKENVL 502
Score = 125 (49.1 bits), Expect = 5.0e-76, Sum P(3) = 5.0e-76
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 953 LYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYG 1012
L+ LR +R + + GEGV + IF + TL+ + ++P+++ ELL + GIG+ K+ KYG
Sbjct: 518 LFEVLREVRKEIAQ--GEGVPPFVIFSDQTLKDMCAKMPQSDSELLTVKGIGEHKLVKYG 575
Query: 1013 VRLLETIESTIKE 1025
L+ ++ I+E
Sbjct: 576 SHFLQAVQHFIEE 588
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 557 (201.1 bits), Expect = 7.6e-76, Sum P(3) = 7.6e-76
Identities = 112/221 (50%), Positives = 149/221 (67%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ + S +FP TK++ +K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 633 EHFQSLNFPHTKEMMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 692
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 693 PACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIK 752
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEKV S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+Q+F
Sbjct: 753 LLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRF 812
Query: 548 PNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
P+ PV V++D++ L ++ +F SFNR NL
Sbjct: 813 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNL 853
Score = 294 (108.6 bits), Expect = 7.6e-76, Sum P(3) = 7.6e-76
Identities = 54/94 (57%), Positives = 70/94 (74%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ +W ++D +ICAT+AFGMGI+KPDVRFV+H SLPKS+E
Sbjct: 903 GLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVE 962
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714
GY+QE GRAGRDG+ S CVL+Y+Y D R+K +I
Sbjct: 963 GYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 996
Score = 40 (19.1 bits), Expect = 7.6e-76, Sum P(3) = 7.6e-76
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 189 TPNA--GNDKFARQDETCLPPELCSICNHGCKL 219
TP + G ++ +T L +L + H CKL
Sbjct: 339 TPKSDLGTNEDCDAQQTSLQQQLIRVMEHICKL 371
Score = 37 (18.1 bits), Expect = 1.6e-75, Sum P(3) = 1.6e-75
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 133 GNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHY 172
G+ T DES V + + + E+ + D+D ++ +
Sbjct: 511 GSVLTSTTVKDESKHVASGRDIEREVQASYDIDNFNIDDF 550
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 480 (174.0 bits), Expect = 1.2e-75, Sum P(3) = 1.2e-75
Identities = 100/242 (41%), Positives = 138/242 (57%)
Query: 348 EREPFIPKI-IKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATM 406
+R+ KI +K N +W FPW+ + K+ F FRP QR INA M
Sbjct: 63 KRQAIERKIELKTNEDSDVVTDRWDRDGFPWSDEATKILKEQFHLEKFRPLQRAAINAVM 122
Query: 407 SGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGN 466
S D V++ TGGGKSL YQLPAL+ G+ LV+SPL+SL++DQI+ L I ++ L+ N
Sbjct: 123 SKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNAN 182
Query: 467 MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526
E + + + + K++LLYVTPEK+AKS ++ +LE + L I IDE HC
Sbjct: 183 TSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCC 242
Query: 527 SQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRP 586
SQWGHDFR DY L +LK++F P+ +V +DV LG+ + FR FNR
Sbjct: 243 SQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRS 302
Query: 587 NL 588
NL
Sbjct: 303 NL 304
Score = 299 (110.3 bits), Expect = 1.2e-75, Sum P(3) = 1.2e-75
Identities = 81/237 (34%), Positives = 124/237 (52%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KA YH ++P R+ + W +I +I ATVAFGMGI+KP+VRFVIHHSLPKSIE
Sbjct: 356 GIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLPKSIEN 415
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDGQ ++C+LYY +D + M+ Q E++ N +N+ +
Sbjct: 416 YYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQ---ERTGI---QNLYNMVRYAA--D 467
Query: 742 TNTENLLRMVSYCENDVD---CRRLLQLVHFGEKFDSAHCKKTCDNCSKIKS---FIEKD 795
++T +++ + E + C++ G F K++ D K+ IE+
Sbjct: 468 SSTCRRVKLAEHFEEAWEPSWCQKQCDTCENGNGFVGTSSKESTDVSEAAKTTVRIIEEH 527
Query: 796 VTD--------TAKKLVELV--KLTG---QQFSSSHILEVFRGSLNQYVKKHRHETL 839
+ T KLVEL+ KL G ++F I+ + L Y+++ H T+
Sbjct: 528 LNSAKDGSGRITGNKLVELLTKKLKGSRNREFCEKLIVNLL---LEGYLQEDFHYTV 581
Score = 46 (21.3 bits), Expect = 1.2e-75, Sum P(3) = 1.2e-75
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 562 SVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQV-GLSYGHFFLLKE 613
++K D G++ C+ S N DCEKVA+ L+ G+ H+ E
Sbjct: 325 TIKRDFAGQTGIIYCL----SRN------DCEKVAKALKSHGIKAKHYHAYME 367
Score = 39 (18.8 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 219 LGL-CPETSSHIQDMKDML 236
LGL TS+ + D+KDML
Sbjct: 269 LGLTATATSNVLDDVKDML 287
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 516 (186.7 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 128/349 (36%), Positives = 188/349 (53%)
Query: 389 FGNHSFRPNQREIIN-ATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447
FG FR Q E I T + + +MPTGGGKS+ YQ+PAL+ G T+VISPL+SL++
Sbjct: 13 FGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMK 72
Query: 448 DQIMHLLQANIPATFLSGNMEWTEQQEILRELNS-DYCKYKLLYVTPEKVAKSDVLLRQL 506
DQ+ L +A I A +++ QEI LN YKL Y+TPE++ + +R L
Sbjct: 73 DQVDALEEAGINAAYINSTQS---NQEIYERLNGLKEGAYKLFYITPERLTSIE-FIRIL 128
Query: 507 ESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXX-SVKE 565
+ ++ L+A IDEAHC+SQWGHDFRP Y+ + IL ++ + PV V +
Sbjct: 129 QGIDV-PLVA---IDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHD 184
Query: 566 DVVQALGLVNCIIFRQSFNRPNLWMDCEK-------VAERLQ-----VGLSYGHFFLLKE 613
D+ + L + F+R NL K + E +Q G+ Y +
Sbjct: 185 DICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATRKEAD 244
Query: 614 FYVVSLECGH-KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
L+ +A YHG + R Q+++ DE+ ++ AT AFGMGI+K ++RFV+H
Sbjct: 245 RIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLH 304
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
+PK +E Y+QE GRAGRDG S CVL +S D + + +I Q E+
Sbjct: 305 AQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEE 353
Score = 160 (61.4 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 47/173 (27%), Positives = 89/173 (51%)
Query: 745 ENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLV 804
+ L +MV YC + DC + L++FGEK A C + C NC+ ++ DVT A+ ++
Sbjct: 360 KKLRQMVDYCHTE-DCLQRFILMYFGEKEPDA-CGQ-CGNCTDTRA--AHDVTREAQMVL 414
Query: 805 ELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIED 864
+ ++F + + +V GS N+ V ++ LS +G KH + E S + L+ +D
Sbjct: 415 SCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDD 474
Query: 865 FLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSD 917
F ++ SD G+ ++ SK N++ G +V + A+ + ++++D
Sbjct: 475 F----IRMSD--GTFPTLFV--SSKGRNVLKGELSVARK--EALKAAAITEND 517
Score = 118 (46.6 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 952 KLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKY 1011
+L+ LRM+R + E +GV + +F + TL+ +S + P ++ELL I G+G+ K +KY
Sbjct: 518 ELFERLRMVRKEIAAE--QGVPPFVVFSDQTLKEMSGKQPVNDDELLSIKGVGEQKRAKY 575
Query: 1012 GVRLLETIES 1021
G L+ I++
Sbjct: 576 GRLFLQEIQA 585
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 579 (208.9 bits), Expect = 2.3e-72, Sum P(3) = 2.3e-72
Identities = 151/407 (37%), Positives = 221/407 (54%)
Query: 386 KKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSL 445
+ VFG +FRP Q EI A G +V +MPTGGGKSL +QLPAL+ G+T+VISPL++L
Sbjct: 9 RDVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLIAL 68
Query: 446 IQDQIMHLLQANIPATFL-SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
++DQ+ L +A + A L SGN E + + + L + + KLLY+ PE++A S +
Sbjct: 69 MRDQVRSLQEAGVEAGALTSGNTP-EETEAVWQALEAG--RLKLLYMAPERLA-SGAAMG 124
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
L + ++ I +DEAHCVSQWGHDFRPDY +G L++ P+ +
Sbjct: 125 MLRRIG----VSLIAVDEAHCVSQWGHDFRPDYLRIGELRRAL-GVPLAAFTATADAETQ 179
Query: 565 EDVVQAL--GLVNCIIFRQSFNRPNLWM-----DCEKV-------AERLQVGLSYGHFFL 610
++V L G F + F+RPN+ + D + A R Q G+ Y
Sbjct: 180 AEIVAKLFDG-EEPRSFLRGFDRPNIHLAFAAKDSPRRQILDFAGARRGQSGIVYCGTRA 238
Query: 611 LKEFYVVSL-ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 669
E +L E GH A YHG ++ R V+ ++++++ I+ ATVAFGMGI+KPD+R+
Sbjct: 239 KTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPDIRW 298
Query: 670 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKH-MISQGVAEQSPFTPGH 728
V H LPKSIE Y+QE GRAGRDG + + + D IR++ I +G+A H
Sbjct: 299 VAHADLPKSIEAYYQEIGRAGRDGGPAETLTLFGPDD-IRLRRSQIDEGLAPPERRAADH 357
Query: 729 NRFNVANSGRVLETNTENLLRMVSYC-ENDVDCRRLLQLVHFGEKFD 774
R N A G + E T ++ Y E ++ C + E+FD
Sbjct: 358 ARLN-ALLG-LAEAMTCRRQTLLGYFGETEITCGKCDLCDSPAERFD 402
Score = 112 (44.5 bits), Expect = 2.3e-72, Sum P(3) = 2.3e-72
Identities = 30/132 (22%), Positives = 60/132 (45%)
Query: 760 CRRLLQLVHFGEKFDSAHCKKTCDNC-SKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSH 818
CRR L +FGE C K CD C S + F D T + + + T + F ++H
Sbjct: 372 CRRQTLLGYFGET--EITCGK-CDLCDSPAERF---DGTTAVRMALSAMLRTEEWFGATH 425
Query: 819 ILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGS 878
++++ G+ ++ RH+ L +G G +++ I R ++ D + + ++
Sbjct: 426 LIDILLGNQTDKIRDRRHDQLPTYGVGTEWNRAQWQAIFRQMMGRDLVRPDPERHGALRM 485
Query: 879 VSSVLKVNQSKA 890
+ L + + +A
Sbjct: 486 TEAALPILRGEA 497
Score = 98 (39.6 bits), Expect = 2.3e-72, Sum P(3) = 2.3e-72
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSK 1010
A L S+L+ R L + A V AY IF + TL ++++ P + +++ I GIG K+ +
Sbjct: 524 APLLSALKAKRRALAEAAR--VPAYVIFPDRTLIEMAEKRPASLDQMARIGGIGAKKLER 581
Query: 1011 YGVRLLETI 1019
YG LE +
Sbjct: 582 YGAMFLEVV 590
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 459 (166.6 bits), Expect = 3.6e-72, Sum P(4) = 3.6e-72
Identities = 88/214 (41%), Positives = 136/214 (63%)
Query: 377 WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICP-GI 435
W + +E N+ +FGN FR Q E IN+ + D FV +PTGGGKSL +Q+P+++ G+
Sbjct: 462 WHELVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRGV 521
Query: 436 TLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILREL-NSDYCKYKLLYVTPE 494
T VISPL++L+QDQ+ L IPA ++ + E +++L +L N + CK KL+Y+TPE
Sbjct: 522 TFVISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYITPE 581
Query: 495 KVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXX 554
++A+S+ L L+ L + L R+V+DEAHC+S+WGH FRP Y+ + + +FP+ P+
Sbjct: 582 RLAQSE-FLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPISA 640
Query: 555 XXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
+V+ D+ +L +VN I SF RPNL
Sbjct: 641 FTASATPNVEIDIKNSLKMVNPITINSSFLRPNL 674
Score = 306 (112.8 bits), Expect = 3.6e-72, Sum P(4) = 3.6e-72
Identities = 57/120 (47%), Positives = 79/120 (65%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E G + FYH + QR+ +QK W+ E I+C T+AFGMGI+K D RFVIHHS+P+S+
Sbjct: 724 ERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFGMGIDKGDTRFVIHHSMPQSM 783
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRV 739
E Y+Q+ GRAGRDG+ S C+L+Y+ SD +R KH+IS + PF N +N G +
Sbjct: 784 ESYYQQTGRAGRDGKHSDCLLFYNKSDLMRFKHIISLN-QPKDPFNAFSN-YNGVGIGDI 841
Score = 78 (32.5 bits), Expect = 3.6e-72, Sum P(4) = 3.6e-72
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
+ N + T E L + S+C CRR+ L +FGE +S C CD C
Sbjct: 869 IKNKIQQTSTKLEMLDSVASFCSTQSKCRRVTLLNYFGE--NSKSCGNMCDIC 919
Score = 65 (27.9 bits), Expect = 3.6e-72, Sum P(4) = 3.6e-72
Identities = 29/158 (18%), Positives = 68/158 (43%)
Query: 8 FPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSK 67
+ R ++E+ K + + Q + Y ++ ++ +N ++NV + S+++ +
Sbjct: 34 YKRDFTSEINKTNNNFDNCQNNEEGY--NVINNNKKNKNNSNNNNVEYNENDNSNNNNNN 91
Query: 68 FSEPMNNRQKGSQINFNVNEPAR---CTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANA 124
+NN + + + + TG L +D + ++K++ ++N
Sbjct: 92 NKNEINNNEIDFDWSMKAKKKIKKSVLTGEDRLDKKTKDLKYLNSIGLLVKLKSTTISNN 151
Query: 125 HFKFSDGFGNHTTEAGQIDESAEVLANKIDDDEILETI 162
+ SD N+ + + DE E +A ID+D + TI
Sbjct: 152 --EISDNSNNNNLKDKENDE-IETIA-LIDEDNEISTI 185
Score = 45 (20.9 bits), Expect = 4.4e-70, Sum P(4) = 4.4e-70
Identities = 27/129 (20%), Positives = 54/129 (41%)
Query: 39 STPVEHSDND--ASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFH 96
+T +++ D++ +S + R S+++ + S E + + + +Q N N ++ S
Sbjct: 212 TTIIQNEDHNTFSSTTTTTRGSIKNKRNKSLKKEEIQKQHEENQDN-NHDKI-----SIE 265
Query: 97 LSNNVRDAGAGKGLRGQNEIKAS-VVANAHFKFSDGFGNHTTEAG-QIDESAEVLANKID 154
N G N ++ S N + T ++ ID + + N ID
Sbjct: 266 YDENELKKTYNLDENGDNIVEMSPAFKNNNLLIKKSKNKKTKQSNIDIDNDNDNVDNYID 325
Query: 155 DDEILETID 163
+D+ ETID
Sbjct: 326 NDDDDETID 334
Score = 41 (19.5 bits), Expect = 1.9e-27, Sum P(4) = 1.9e-27
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 479 LNSDYCKYKLLYVTPEKVAKSDVLLRQL 506
+NS + + LLY +K + + LL+ +
Sbjct: 665 INSSFLRPNLLYQVRQKQSDEESLLKDI 692
Score = 40 (19.1 bits), Expect = 9.8e-41, Sum P(3) = 9.8e-41
Identities = 22/98 (22%), Positives = 37/98 (37%)
Query: 751 VSYCENDVDCRRLLQ-LVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKL 809
+ YC +C + L G + H K + N + K ++KD T+ K+V
Sbjct: 706 IIYCATVRECEIVADYLSERGLSSNFYHAKLS--NTQRSK--LQKDWTNGEFKIVCTTIA 761
Query: 810 TGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKH 847
G V S+ Q ++ + +T GKH
Sbjct: 762 FGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKH 799
Score = 39 (18.8 bits), Expect = 3.0e-27, Sum P(4) = 3.0e-27
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 468 EWTEQQEILRELNSDYC-KYKLLYVTPEKVA-KSD 500
EW E +++ N D C + + P+ KSD
Sbjct: 401 EWLESPIVIKLSNDDSCFTNSKIKINPKSFTIKSD 435
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 466 (169.1 bits), Expect = 1.7e-69, Sum P(2) = 1.7e-69
Identities = 111/247 (44%), Positives = 147/247 (59%)
Query: 387 KVFGNHSFRPNQREIIN-ATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
KVFG SF+ + +E A + G DVFV MPTG GKSL YQLPA++ GIT+VISPL++
Sbjct: 27 KVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIA 86
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
LIQDQ+ HLL I A L+ + E++ IL +L S+ + KLLY+TPE A S
Sbjct: 87 LIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS-FQP 145
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
L SL +R LL+ ++IDEAHCVSQWGHDFRPDY LG L+ + PNTP V+
Sbjct: 146 TLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQ 205
Query: 565 EDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGH 623
+D+V AL L + F+ R NL+ D + E L Y + LK+F + +LE +
Sbjct: 206 DDIVTALKLKQPLATFKTPCFRSNLFYDVQ-FKELLTD--PYAN---LKDFCLKALEVKN 259
Query: 624 KAAFYHG 630
Y G
Sbjct: 260 TTGVYSG 266
Score = 278 (102.9 bits), Expect = 1.7e-69, Sum P(2) = 1.7e-69
Identities = 61/164 (37%), Positives = 96/164 (58%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KA YH + A R VQ +W +++I +I AT++FGMG++K +VRFV H ++ KS+ G
Sbjct: 289 GVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAG 348
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG+ S C LYYS +D +V +I + +++ + + S + +
Sbjct: 349 YYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQ-----EKKGTLKESDKSVM 403
Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
T + + VS+CE ++ CR +FG+ + C K CD C
Sbjct: 404 TAFDAI---VSFCE-ELGCRHAAIAKYFGDV--TPPCNKCCDYC 441
Score = 40 (19.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 229 IQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLL 272
IQD D L+A+ + + LS + + + + QI+LL
Sbjct: 88 IQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLL 131
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 459 (166.6 bits), Expect = 2.8e-69, Sum P(2) = 2.8e-69
Identities = 107/250 (42%), Positives = 151/250 (60%)
Query: 375 FPWT--KKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPAL 430
FP+ +++ + KKVFG SF+ P Q A + G+ DVFV MPTG GKSL YQLPAL
Sbjct: 8 FPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL 67
Query: 431 ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
+ GIT+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L + + K+LY
Sbjct: 68 LAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILY 127
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
+TPE A S L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ + +
Sbjct: 128 ITPEMAASSS-FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHA 186
Query: 551 PVXXXXXXXXXSVKEDVVQALGLVNCI-IFRQSFNRPNLWMDCEKVAERLQVGLSYGHFF 609
P V+EDV AL L + IF+ R NL+ D + + L + YG+
Sbjct: 187 PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQ--FKEL-ISDPYGN-- 241
Query: 610 LLKEFYVVSL 619
LK+F + +L
Sbjct: 242 -LKDFCLKAL 250
Score = 283 (104.7 bits), Expect = 2.8e-69, Sum P(2) = 2.8e-69
Identities = 63/174 (36%), Positives = 98/174 (56%)
Query: 613 EFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
E + L C G A YH + ++R VQ W ++++ +I AT++FGMG++K +VRFV
Sbjct: 273 EQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVA 332
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRF 731
H ++ KS+ GY+QE GRAGRDG+ S C LYYS +D +V +I + VA+ R
Sbjct: 333 HWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ-----EKRG 387
Query: 732 NVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
N A+ + +V++CE ++ CR +FG+ + C K CD+C
Sbjct: 388 NKASDKATIMAFDA----LVTFCE-ELGCRHAAIAKYFGDALPA--CAKGCDHC 434
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 696 (250.1 bits), Expect = 5.1e-68, P = 5.1e-68
Identities = 169/447 (37%), Positives = 241/447 (53%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG+ FR Q E I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+M L + I A +LS + +I +L+S +LLYVTPE +A +L+ L
Sbjct: 92 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK-LRK 150
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
L++R LL I IDEAHC+S WGHDFRP Y+ L L+ + PV V++DV+
Sbjct: 151 LHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVI 210
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC--EKVAERLQVGL-----SYGHF----FLLK----- 612
+L L N ++ + SFNRPN++ + + + + L S G+ + L+
Sbjct: 211 DSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCD 270
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
+ V G +A YH ++ R+ V W + II ATVAFGMGI+K DVR V H
Sbjct: 271 DLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCH 330
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
++PKS+E ++QE GRAGRD S VLYY D ++++++ N N
Sbjct: 331 FNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL-------------RNSEN 377
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+S + T + ++V+YCE CRR L FGE+F CKKTCD C
Sbjct: 378 KKSSSS--KKPTSDFEQIVTYCEGS-GCRRKKILESFGEEFPVQQCKKTCDAC------- 427
Query: 793 EKDVTDTAKKLVELVKLTGQQFSSSHI 819
K A L EL+ ++ +SS I
Sbjct: 428 -KHPNQVAHCLEELMTTASRRHNSSRI 453
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 465 (168.7 bits), Expect = 6.4e-66, Sum P(2) = 6.4e-66
Identities = 113/258 (43%), Positives = 152/258 (58%)
Query: 371 SSWDFPWTKKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLP 428
S+ F +++ + KKVFG SF+ P Q I A + G DVFV MPTG GKSL YQLP
Sbjct: 2 STHPFDPERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLP 61
Query: 429 ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488
AL+ GIT+VISPL++LIQDQ+ HLL I L+ + E++E+L +L + + KL
Sbjct: 62 ALLAKGITIVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKL 121
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
LY+TPE A + L+SL AR LL+ +V+DEAHCVSQWGHDFRPDY LG L+ +
Sbjct: 122 LYITPEMAASAS-FQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA 180
Query: 549 NTPVXXXXXXXXXSVKEDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQVGLSYGH 607
+ P V+EDV AL L + F+ R NL+ D + E L YG+
Sbjct: 181 HAPCVALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQ-FKELLSD--PYGN 237
Query: 608 FFLLKEFYVVSLECGHKA 625
L++F + +L G KA
Sbjct: 238 ---LRDFCLKAL--GQKA 250
Score = 245 (91.3 bits), Expect = 6.4e-66, Sum P(2) = 6.4e-66
Identities = 46/99 (46%), Positives = 68/99 (68%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A YH + A+R VQ +W + ++ +I AT++FGMG++K +VRFV H ++ KS+ G
Sbjct: 279 GVNAKAYHAGLKAAERTLVQNEWMEGKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAG 338
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAE 720
Y+QE GRAGRDG+ S C LYYS +D +V +I + VA+
Sbjct: 339 YYQESGRAGRDGRPSWCRLYYSRNDRDQVSFLIRKEVAK 377
Score = 40 (19.1 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 229 IQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLL 272
IQD D L+A+ + + LS + ++L + Q + +LL
Sbjct: 79 IQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLL 122
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 459 (166.6 bits), Expect = 3.6e-64, Sum P(2) = 3.6e-64
Identities = 107/250 (42%), Positives = 151/250 (60%)
Query: 375 FPWT--KKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPAL 430
FP+ +++ + KKVFG SF+ P Q A + G+ DVFV MPTG GKSL YQLPAL
Sbjct: 8 FPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPAL 67
Query: 431 ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
+ GIT+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L + + K+LY
Sbjct: 68 LAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILY 127
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
+TPE A S L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ + +
Sbjct: 128 ITPEMAASSS-FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHA 186
Query: 551 PVXXXXXXXXXSVKEDVVQALGLVNCI-IFRQSFNRPNLWMDCEKVAERLQVGLSYGHFF 609
P V+EDV AL L + IF+ R NL+ D + + L + YG+
Sbjct: 187 PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQ--FKEL-ISDPYGN-- 241
Query: 610 LLKEFYVVSL 619
LK+F + +L
Sbjct: 242 -LKDFCLKAL 250
Score = 283 (104.7 bits), Expect = 3.6e-64, Sum P(2) = 3.6e-64
Identities = 63/174 (36%), Positives = 98/174 (56%)
Query: 613 EFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
E + L C G A YH + ++R VQ W ++++ +I AT++FGMG++K +VRFV
Sbjct: 273 EQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVA 332
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRF 731
H ++ KS+ GY+QE GRAGRDG+ S C LYYS +D +V +I + VA+ R
Sbjct: 333 HWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ-----EKRG 387
Query: 732 NVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
N A+ + +V++CE ++ CR +FG+ + C K CD+C
Sbjct: 388 NKASDKATIMAFDA----LVTFCE-ELGCRHAAIAKYFGDALPA--CAKGCDHC 434
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 466 (169.1 bits), Expect = 1.7e-63, Sum P(3) = 1.7e-63
Identities = 111/247 (44%), Positives = 147/247 (59%)
Query: 387 KVFGNHSFRPNQREIIN-ATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
KVFG SF+ + +E A + G DVFV MPTG GKSL YQLPA++ GIT+VISPL++
Sbjct: 27 KVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIA 86
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
LIQDQ+ HLL I A L+ + E++ IL +L S+ + KLLY+TPE A S
Sbjct: 87 LIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASS-FQP 145
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
L SL +R LL+ ++IDEAHCVSQWGHDFRPDY LG L+ + PNTP V+
Sbjct: 146 TLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQ 205
Query: 565 EDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGH 623
+D+V AL L + F+ R NL+ D + E L Y + LK+F + +LE +
Sbjct: 206 DDIVTALKLKQPLATFKTPCFRSNLFYDVQ-FKELLTD--PYAN---LKDFCLKALEVKN 259
Query: 624 KAAFYHG 630
Y G
Sbjct: 260 TTGVYSG 266
Score = 278 (102.9 bits), Expect = 1.7e-63, Sum P(3) = 1.7e-63
Identities = 61/164 (37%), Positives = 96/164 (58%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KA YH + A R VQ +W +++I +I AT++FGMG++K +VRFV H ++ KS+ G
Sbjct: 289 GVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVAHWNIAKSMAG 348
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG+ S C LYYS +D +V +I + +++ + + S + +
Sbjct: 349 YYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQ-----EKKGTLKESDKSVM 403
Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
T + + VS+CE ++ CR +FG+ + C K CD C
Sbjct: 404 TAFDAI---VSFCE-ELGCRHAAIAKYFGDV--TPPCNKCCDYC 441
Score = 40 (19.1 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 229 IQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLL 272
IQD D L+A+ + + LS + + + + QI+LL
Sbjct: 88 IQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLL 131
Score = 39 (18.8 bits), Expect = 1.7e-63, Sum P(3) = 1.7e-63
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 871 KKSDVYGSVSSVLKVNQSKAHNLI 894
KKS ++ + S +LKV + L+
Sbjct: 674 KKSGLFQTASELLKVQEDNDTKLV 697
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 727 GHNRFNVANSGRVLETNTENLLR 749
G +R++ +SG E N EN R
Sbjct: 490 GFSRYDEESSGNGDEANEENRKR 512
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 459 (166.6 bits), Expect = 6.4e-63, Sum P(2) = 6.4e-63
Identities = 109/250 (43%), Positives = 151/250 (60%)
Query: 379 KKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGIT 436
+++ + KKVFG SF+ P Q + I A + G DVFV MPTG GKSL YQLPAL+ GIT
Sbjct: 13 RRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGIT 72
Query: 437 LVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496
+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L + + KLLY+TPE +
Sbjct: 73 IVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQTKLLYITPE-M 131
Query: 497 AKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXX 556
A S L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ + + P
Sbjct: 132 AASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLADAPCVALT 191
Query: 557 XXXXXSVKEDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFY 615
V+EDV AL L + F+ R NL+ D + E L YG+ L++F
Sbjct: 192 ATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQ-FKELLPD--PYGN---LRDFC 245
Query: 616 VVSLECGHKA 625
+ +L G KA
Sbjct: 246 LKAL--GQKA 253
Score = 271 (100.5 bits), Expect = 6.4e-63, Sum P(2) = 6.4e-63
Identities = 74/235 (31%), Positives = 118/235 (50%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A YH + +R VQ +W ++++ +I AT++FGMG++K +VRFV H ++ KS+ G
Sbjct: 282 GVNAKAYHAGLKAPERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAG 341
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANS-GRVL 740
Y+QE GRAGRDG+ S C LYYS SD +V +I + VA+ R N A+ VL
Sbjct: 342 YYQESGRAGRDGKPSWCRLYYSRSDRDQVSFLIRKEVAKLQ-----EKRGNKASDKAAVL 396
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTA 800
+ +V++CE CR +FG+ + C K CD C + + K +
Sbjct: 397 AFDA-----LVAFCEES-GCRHAAIAKYFGDSPPA--CTKGCDCCQN-PTGVRKQLDALE 447
Query: 801 KKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASR 855
++ G + + E++ G Y R++ S G+G + EA +
Sbjct: 448 QRSSWNKTCIGPSQGNGYDPELYEGGRRGYGGFSRYDEGS-GGSGDE-GRDEAQK 500
Score = 42 (19.8 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 229 IQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLL 272
IQD D L+A+ + + LS + ++L + Q Q +LL
Sbjct: 82 IQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQTKLL 125
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 455 (165.2 bits), Expect = 8.7e-63, Sum P(2) = 8.7e-63
Identities = 110/258 (42%), Positives = 152/258 (58%)
Query: 371 SSWDFPWTKKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLP 428
S+ F +++ + KKVFG SF+ P Q A + G DVFV MPTG GKSL YQLP
Sbjct: 2 SAHPFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLP 61
Query: 429 ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488
AL+ GIT+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L + + KL
Sbjct: 62 ALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKL 121
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
LY+TPE +A S L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ +
Sbjct: 122 LYITPE-MAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLA 180
Query: 549 NTPVXXXXXXXXXSVKEDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQVGLSYGH 607
+ P V+EDV AL L + F+ R NL+ D + E L YG+
Sbjct: 181 HAPCIALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQ-FKELLSD--PYGN 237
Query: 608 FFLLKEFYVVSLECGHKA 625
L++F + +L G KA
Sbjct: 238 ---LRDFCLKAL--GQKA 250
Score = 274 (101.5 bits), Expect = 8.7e-63, Sum P(2) = 8.7e-63
Identities = 61/165 (36%), Positives = 97/165 (58%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A YH + ++R VQ +W ++++ +I AT++FGMG++K +VRFV H ++ KS+ G
Sbjct: 280 GVNAKAYHAGLKASERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAG 339
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANS-GRVL 740
Y+QE GRAGRDG+ S C LYYS +D +V +I + VA+ R N A+ +L
Sbjct: 340 YYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ-----EKRGNKASDKAAIL 394
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
+ +V++CE ++ CR +FG+ + C K CD+C
Sbjct: 395 AFDA-----LVTFCE-ELGCRHAAIAKYFGDAPPA--CTKGCDHC 431
Score = 39 (18.8 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 229 IQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLL 272
IQD D L+A+ + + LS + ++L + + Q +LL
Sbjct: 79 IQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLL 122
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 459 (166.6 bits), Expect = 5.2e-62, Sum P(2) = 5.2e-62
Identities = 100/225 (44%), Positives = 136/225 (60%)
Query: 372 SWDFPWTKKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPA 429
S F +++ + KKVFG SF+ P Q I A + G DVFV MPTG GKSL YQLPA
Sbjct: 7 STPFDRERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPA 66
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
++ GIT+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L D + KLL
Sbjct: 67 VLAKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLL 126
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
Y+TPE A + L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ + +
Sbjct: 127 YITPEMAASAS-FQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAH 185
Query: 550 TPVXXXXXXXXXSVKEDVVQALGLVNCII-FRQSFNRPNLWMDCE 593
P V+EDV AL L + F+ R NL+ D +
Sbjct: 186 APCVALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQ 230
Score = 262 (97.3 bits), Expect = 5.2e-62, Sum P(2) = 5.2e-62
Identities = 60/164 (36%), Positives = 93/164 (56%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A YH + ++R VQ +W ++++ +I AT++FGMG++K +VRFV H ++ KS+ G
Sbjct: 284 GVNAKAYHAGLKASERTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAG 343
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG+ S C LYYS +D +V +I + +A+ R N + L
Sbjct: 344 YYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKELAKLQ-----EKRGNKPSDKATLL 398
Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
+V++CE +V CR +FG+ + C K CD C
Sbjct: 399 AFDA----LVTFCE-EVGCRHAAIAKYFGDAPPA--CAKGCDCC 435
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 409 (149.0 bits), Expect = 4.5e-61, Sum P(4) = 4.5e-61
Identities = 89/246 (36%), Positives = 143/246 (58%)
Query: 351 PFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKV-FGNHSFRPNQREIINATMSGH 409
PF ++ IE +D W ++ P + N K+ FG+ SF+P Q ++I++ +
Sbjct: 482 PFEDDEDEIEAIEEEDDNCWQNYSLPRPNARQINFLKIYFGHSSFKPVQWKVIHSVLEER 541
Query: 410 -DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNME 468
D V+M TG GKSL +Q P + I LVISPL+SL++DQ++ L +NIPA FL
Sbjct: 542 RDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLISLMEDQVLQLKMSNIPACFLGS--- 598
Query: 469 WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528
+ + +L ++ KY+++Y+TPE + + LL+QL++ L+A +DEAHC+S+
Sbjct: 599 -AQSKNVLEDIKLG--KYRIVYITPEFCSGNLFLLQQLQADIGITLIA---VDEAHCISE 652
Query: 529 WGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
WGHDFR ++ LG LK P+ P+ S++ED+V+ L L N I F+RPNL
Sbjct: 653 WGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNL 712
Query: 589 WMDCEK 594
+++ +
Sbjct: 713 YLEVRR 718
Score = 292 (107.8 bits), Expect = 4.5e-61, Sum P(4) = 4.5e-61
Identities = 81/259 (31%), Positives = 132/259 (50%)
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
E + L CG YH +D R + ++ +DEI + AT+AFGMGINK D+R VIH
Sbjct: 762 ELRKLKLACGA----YHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIH 817
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+ PK +E Y+QE GRAGRDG +SSC + ++ +D +H +S+ +E+ +
Sbjct: 818 YGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRL---YKLKM 874
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+A + L + ++S+ E D R+ + G + +C+ D CS I
Sbjct: 875 MAKMEKYLHSTRCRRQLILSHFE-DKQLRKASVGI-MGTEQCCDNCRSRLDQCSSIDDSD 932
Query: 793 E--KDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVK-KHRHETLSLHGAGKHLA 849
+ +D +L+ VK+ G++F + +GS +Q ++ K+R SL G GK
Sbjct: 933 DASQDFGPQTFQLLSAVKILGEKFGIGLPILFLQGSNSQRLEDKYRRH--SLFGTGKDQK 990
Query: 850 KSEASRILRHLVIEDFLME 868
+S + R L+ E FL+E
Sbjct: 991 ESWWKALSRQLMAEGFLVE 1009
Score = 66 (28.3 bits), Expect = 4.5e-61, Sum P(4) = 4.5e-61
Identities = 45/180 (25%), Positives = 72/180 (40%)
Query: 847 HLAKSEASRILRHLVIEDFLMEEV---KKSDVYGSVSSVLKVNQSKAHNLIIGRQ-NVVL 902
H A E + L+ E+ +E++ K SD S S++ + SK + I R + L
Sbjct: 1031 HEANREFPKKLKLEANEESNLEKMYSYKASDKISSGSNIPEKRVSKHSYIYIPRPFKIYL 1090
Query: 903 RFPSAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQ-NEVDLNLSAKLYSSLRMLR 961
R A S + + P P ++ S+P + + LY L R
Sbjct: 1091 REKDAYTSITIILKFIPPPLHS-------PGKSYKSSEPVISAEEQETQTVLYGILVEAR 1143
Query: 962 TLLVKEAGEGVMAYHIFG-NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
K AG+ + I N L ++K P T E + ING+ + K + LLE I+
Sbjct: 1144 Q---KHAGKMDVPPAILATNKILLEMAKMRPTTFENMKRINGVSEGKATML-TPLLEVIK 1199
Score = 50 (22.7 bits), Expect = 4.5e-61, Sum P(4) = 4.5e-61
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 231 DMKDMLIAISNELLDNATNLSPAQTEKLRQ-ERLQL 265
D+K L +IS E++D A +L P +KL +R+ L
Sbjct: 255 DVKKQLTSISEEMMDLAKHL-PDALKKLEDPQRVSL 289
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 406 (148.0 bits), Expect = 6.5e-60, Sum P(4) = 6.5e-60
Identities = 101/313 (32%), Positives = 163/313 (52%)
Query: 363 EGSNDQKWS-SWDFPWTKKLEANNKKVFGNHSFRPNQREIINATM-SGHDVFVLMPTGGG 420
E +D W S P + + K FG+ SF+P Q +++++ + D V+M TG G
Sbjct: 459 EEDDDDDWDPSMPEPSAQHISCL-KTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYG 517
Query: 421 KSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELN 480
KSL YQ + GI +VI PL+SL++DQ++ L +NI + FL + + +L+++
Sbjct: 518 KSLCYQFAPVYTSGIGIVICPLISLMEDQVLQLEMSNISSCFLGS----AQSKNVLQDVK 573
Query: 481 SDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540
K +++Y+TPE ++ LL+ L++ R + I IDEAHC+S+WGHDFR Y+ L
Sbjct: 574 DG--KMRVIYMTPEFCSRGISLLQDLDN---RYGITLIAIDEAHCISEWGHDFRSAYRSL 628
Query: 541 GILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQ 600
G LK+ PN P+ S++ED+ ++L L N + SF+RPNL++D + +
Sbjct: 629 GSLKRMLPNVPIVALTATASPSIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNIS 688
Query: 601 VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660
+ L FL+K+ E Y P ++ Q ++ I C T GM
Sbjct: 689 IDLRQ---FLIKKQQGSGWEFEGATIVYC----PTRKTSEQVTAELIKLGIACGTYHAGM 741
Query: 661 GINKPDVRFVIHH 673
GI + R +HH
Sbjct: 742 GIKQ---RREVHH 751
Score = 289 (106.8 bits), Expect = 6.5e-60, Sum P(4) = 6.5e-60
Identities = 92/338 (27%), Positives = 156/338 (46%)
Query: 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 678
++ G YH + QR V ++ +DEI+ + ATVAFGMGINKPD+R VIH+ PK
Sbjct: 728 IKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHYGAPKE 787
Query: 679 IEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGR 738
+E Y+QE GRAGRDG S C ++ +D +HM+ G F + + +
Sbjct: 788 MESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHML--GEIPNKGFREYKLKM-LTKMEK 844
Query: 739 VLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKF-DSAHCKKTCD-NCSKIKSFIEKDV 796
L ++T ++S+ E D R+ + EK D+ + C+ + + + ++ D
Sbjct: 845 YLNSSTCRRKIILSHFE-DKQLRKASSGIMGTEKCCDNCKTRLICNISINDTEDNLQ-DF 902
Query: 797 TDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRI 856
A K + V + GQ+F + + RGS +Q V R SL +GK ++ +
Sbjct: 903 GPQAYKFISAVDVLGQKFGTGVPVLFLRGSTSQRVPD-RFRNHSLFSSGKDQTEAFWKVL 961
Query: 857 LRHLVIEDFLME---EVKKSDVYGSVSS----VLKVNQSKAHNLIIGRQNVVLRFPSAIN 909
R L+ E +L E + K S + G S ++K N + +L++ N + +
Sbjct: 962 ARQLITEGYLQESSGQTKFSTICGLTSKGSNWLIKANNEQCPSLLLPSNNEL-----CLQ 1016
Query: 910 STKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDL 947
T++S A +R+ P +++L
Sbjct: 1017 RTRVSNFSSAQAHSSMVPHASSNTRSSMPKAGPEKMEL 1054
Score = 69 (29.3 bits), Expect = 6.5e-60, Sum P(4) = 6.5e-60
Identities = 22/90 (24%), Positives = 42/90 (46%)
Query: 932 PSRNDTPSQPQ-NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRV 990
P + P +P+ + + L LY L + R + E ++ + N L ++K
Sbjct: 1082 PCKLSRPPEPEVSPRERELQTTLYGRLVVARQKIASE--RDILPAVLATNKVLVDMAKLR 1139
Query: 991 PRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
P T E + +++G+ +AK S LLE ++
Sbjct: 1140 PTTSENMKKLDGVSEAK-SAMLAPLLEVVK 1168
Score = 44 (20.5 bits), Expect = 6.5e-60, Sum P(4) = 6.5e-60
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 1099 LDFDEYEYVYEMNGSTTKPDQNNGGRVLPRW 1129
LD D E E STT+P R LP W
Sbjct: 1383 LDADTEELFSESQSSTTRPR-----RRLPEW 1408
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 391 (142.7 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
Identities = 105/313 (33%), Positives = 163/313 (52%)
Query: 363 EGS-NDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGG 420
EG +D K W P +++ K FG+ SF+P Q ++I++ + D +M TG G
Sbjct: 518 EGEEDDDKDFLWPAPNEEQVTCL-KMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYG 576
Query: 421 KSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELN 480
KSL +Q P + I LVISPL+SL++DQ++ L +NIPA FL + + +L ++
Sbjct: 577 KSLCFQYPPVYVGKIGLVISPLISLMEDQVLQLKMSNIPACFLGS----AQSENVLTDIK 632
Query: 481 SDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540
KY+++YVTPE + + LL+QLE+ L+A +DEAHC+S+WGHDFR ++ L
Sbjct: 633 LG--KYRIVYVTPEYCSGNMGLLQQLEADIGITLIA---VDEAHCISEWGHDFRDSFRKL 687
Query: 541 GILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQ 600
G LK P P+ S++ED+V+ L L N I F+RPNL+++ + +
Sbjct: 688 GSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNIL 747
Query: 601 VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660
L FL+K E G + P+++ Q ++N+ C T GM
Sbjct: 748 QDLQP---FLVKTSSHWEFE-GPTIIYC-----PSRKMTQQVTGELRKLNLSCGTYHAGM 798
Query: 661 GINKPDVRFVIHH 673
+ R IHH
Sbjct: 799 SFS---TRKDIHH 808
Score = 297 (109.6 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
Identities = 93/345 (26%), Positives = 164/345 (47%)
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
E ++L CG YH + + R + ++ +DEI + AT+AFGMGINK D+R VIH
Sbjct: 783 ELRKLNLSCGT----YHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIH 838
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+ PK +E Y+QE GRAGRDG +SSC + ++ +D +H++++ E+ +
Sbjct: 839 YGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRL---YKLKM 895
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+A + L ++ ++S+ E+ + L ++ G + +C+ D+C +
Sbjct: 896 MAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIM--GTEKCCDNCRSRLDHCYSMDDSE 953
Query: 793 EK--DVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAK 850
+ D A KL+ V + G++F + RGS +Q + ++ SL G GK +
Sbjct: 954 DTSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLAD-QYRRHSLFGTGKDQTE 1012
Query: 851 SEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINS 910
S R L+ E FL+E V + + + + ++ K ++ H Q+++L+ +
Sbjct: 1013 SWWKAFSRQLITEGFLVE-VSRYNKFMKICALTKKGRNWLHKANTESQSLILQANEELCP 1071
Query: 911 TKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAKLYS 955
KL + P+ N P + E NL KLYS
Sbjct: 1072 KKL----LLPSSKTVSSGTKEHCYNQVPVELSTEKKSNLE-KLYS 1111
Score = 49 (22.3 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 229 IQDMKDMLIAISNELLDNATNLSPAQTEKLRQER 262
+ DM L +IS E++D A +L P KL R
Sbjct: 247 LSDMNKQLTSISEEVMDLAKHL-PHAFSKLENPR 279
Score = 48 (22.0 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 980 NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
N L ++K P T E + I+G+ + K + LLE I+
Sbjct: 1181 NKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIK 1220
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 389 (142.0 bits), Expect = 2.3e-57, Sum P(4) = 2.3e-57
Identities = 88/246 (35%), Positives = 141/246 (57%)
Query: 351 PFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKV-FGNHSFRPNQREIINATMSGH 409
PF ++ IE +D + P + N K+ FG+ SF+P Q ++I++ +
Sbjct: 596 PFEDDEDEIEAIEEEDDNV-EDYSLPRPNARQINFLKIYFGHSSFKPVQWKVIHSVLEER 654
Query: 410 -DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNME 468
D V+M TG GKSL +Q P + I LVISPL+SL++DQ++ L +NIPA FL
Sbjct: 655 RDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLISLMEDQVLQLKMSNIPACFLGS--- 711
Query: 469 WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528
+ + +L ++ KY+++Y+TPE + + LL+QL++ L+A +DEAHC+S+
Sbjct: 712 -AQSKNVLEDIKLG--KYRIVYITPEFCSGNLFLLQQLQADIGITLIA---VDEAHCISE 765
Query: 529 WGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
WGHDFR ++ LG LK P+ P+ S++ED+V+ L L N I F+RPNL
Sbjct: 766 WGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNL 825
Query: 589 WMDCEK 594
+++ +
Sbjct: 826 YLEVRR 831
Score = 292 (107.8 bits), Expect = 2.3e-57, Sum P(4) = 2.3e-57
Identities = 81/259 (31%), Positives = 132/259 (50%)
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
E + L CG YH +D R + ++ +DEI + AT+AFGMGINK D+R VIH
Sbjct: 874 ELRKLKLACGA----YHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIH 929
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+ PK +E Y+QE GRAGRDG +SSC + ++ +D +H +S+ +E+ +
Sbjct: 930 YGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRL---YKLKM 986
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+A + L + ++S+ E D R+ + G + +C+ D CS I
Sbjct: 987 MAKMEKYLHSTRCRRQLILSHFE-DKQLRKASVGI-MGTEQCCDNCRSRLDQCSSIDDSD 1044
Query: 793 E--KDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVK-KHRHETLSLHGAGKHLA 849
+ +D +L+ VK+ G++F + +GS +Q ++ K+R SL G GK
Sbjct: 1045 DASQDFGPQTFQLLSAVKILGEKFGIGLPILFLQGSNSQRLEDKYRRH--SLFGTGKDQK 1102
Query: 850 KSEASRILRHLVIEDFLME 868
+S + R L+ E FL+E
Sbjct: 1103 ESWWKALSRQLMAEGFLVE 1121
Score = 56 (24.8 bits), Expect = 2.3e-57, Sum P(4) = 2.3e-57
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 937 TPSQPQNEVDLNLSAKLYSSLRMLRTLLV----KEAGEGVMAYHIFG-NATLQHLSKRVP 991
+P + + +SA+ + +L +LV K AG+ + I N L ++K P
Sbjct: 1225 SPGKSYKSSEPVISAEEQETQTVLYGILVEARQKHAGKMDVPPAILATNKILLEMAKMRP 1284
Query: 992 RTEEELLEINGIGKAKVSKYGVRLLETIE 1020
T E + ING+ + K + LLE I+
Sbjct: 1285 TTFENMKRINGVSEGKATML-TPLLEVIK 1312
Score = 50 (22.7 bits), Expect = 2.3e-57, Sum P(4) = 2.3e-57
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 231 DMKDMLIAISNELLDNATNLSPAQTEKLRQ-ERLQL 265
D+K L +IS E++D A +L P +KL +R+ L
Sbjct: 369 DVKKQLTSISEEMMDLAKHL-PDALKKLEDPQRVSL 403
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 389 (142.0 bits), Expect = 8.9e-57, Sum P(5) = 8.9e-57
Identities = 88/246 (35%), Positives = 141/246 (57%)
Query: 351 PFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKV-FGNHSFRPNQREIINATMSGH 409
PF ++ IE +D + P + N K+ FG+ SF+P Q ++I++ +
Sbjct: 564 PFEDDEDEIEAIEEEDDNV-EDYSLPRPNARQINFLKIYFGHSSFKPVQWKVIHSVLEER 622
Query: 410 -DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNME 468
D V+M TG GKSL +Q P + I LVISPL+SL++DQ++ L +NIPA FL
Sbjct: 623 RDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLISLMEDQVLQLKMSNIPACFLGS--- 679
Query: 469 WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528
+ + +L ++ KY+++Y+TPE + + LL+QL++ L+A +DEAHC+S+
Sbjct: 680 -AQSKNVLEDIKLG--KYRIVYITPEFCSGNLFLLQQLQADIGITLIA---VDEAHCISE 733
Query: 529 WGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNL 588
WGHDFR ++ LG LK P+ P+ S++ED+V+ L L N I F+RPNL
Sbjct: 734 WGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLKNPQITCTGFDRPNL 793
Query: 589 WMDCEK 594
+++ +
Sbjct: 794 YLEVRR 799
Score = 292 (107.8 bits), Expect = 8.9e-57, Sum P(5) = 8.9e-57
Identities = 81/259 (31%), Positives = 132/259 (50%)
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
E + L CG YH +D R + ++ +DEI + AT+AFGMGINK D+R VIH
Sbjct: 842 ELRKLKLACGA----YHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIH 897
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+ PK +E Y+QE GRAGRDG +SSC + ++ +D +H +S+ +E+ +
Sbjct: 898 YGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRL---YKLKM 954
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+A + L + ++S+ E D R+ + G + +C+ D CS I
Sbjct: 955 MAKMEKYLHSTRCRRQLILSHFE-DKQLRKASVGI-MGTEQCCDNCRSRLDQCSSIDDSD 1012
Query: 793 E--KDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVK-KHRHETLSLHGAGKHLA 849
+ +D +L+ VK+ G++F + +GS +Q ++ K+R SL G GK
Sbjct: 1013 DASQDFGPQTFQLLSAVKILGEKFGIGLPILFLQGSNSQRLEDKYRRH--SLFGTGKDQK 1070
Query: 850 KSEASRILRHLVIEDFLME 868
+S + R L+ E FL+E
Sbjct: 1071 ESWWKALSRQLMAEGFLVE 1089
Score = 56 (24.8 bits), Expect = 8.9e-57, Sum P(5) = 8.9e-57
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 937 TPSQPQNEVDLNLSAKLYSSLRMLRTLLV----KEAGEGVMAYHIFG-NATLQHLSKRVP 991
+P + + +SA+ + +L +LV K AG+ + I N L ++K P
Sbjct: 1193 SPGKSYKSSEPVISAEEQETQTVLYGILVEARQKHAGKMDVPPAILATNKILLEMAKMRP 1252
Query: 992 RTEEELLEINGIGKAKVSKYGVRLLETIE 1020
T E + ING+ + K + LLE I+
Sbjct: 1253 TTFENMKRINGVSEGKATML-TPLLEVIK 1280
Score = 50 (22.7 bits), Expect = 8.9e-57, Sum P(5) = 8.9e-57
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 231 DMKDMLIAISNELLDNATNLSPAQTEKLRQ-ERLQL 265
D+K L +IS E++D A +L P +KL +R+ L
Sbjct: 250 DVKKQLTSISEEMMDLAKHL-PDALKKLEDPQRVSL 284
Score = 38 (18.4 bits), Expect = 8.9e-57, Sum P(5) = 8.9e-57
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 1112 GSTTKPDQNNGGRVLPRW 1129
G+ TK R LP+W
Sbjct: 1456 GTNTKTSSITSKRKLPKW 1473
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 398 (145.2 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 84/206 (40%), Positives = 120/206 (58%)
Query: 386 KKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSL 445
KK FG HSFRPNQ E+I T+SG D F+ M TG GKSL +Q+P L +V+SPLVSL
Sbjct: 294 KKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNKTAIVVSPLVSL 353
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
I DQ + L I T LS +++ + ++ L + Y Y L+Y+TPE++ +
Sbjct: 354 ITDQTLKLKSLGIKVTKLSSDIKSSSKEYEL--IFKGY--YNLVYITPERIINE---YQS 406
Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKE 565
+ L E + IDEAHC+SQWGH FR Y+ L L+ +FP P+ S++
Sbjct: 407 IGELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPTVPIMAVTATATKSIES 466
Query: 566 DVVQALGLVN--CIIFRQSFNRPNLW 589
D++ LG+ N C +F+ S NRPN++
Sbjct: 467 DIINNLGIGNGNCKMFKSSKNRPNIY 492
Score = 268 (99.4 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 82/318 (25%), Positives = 155/318 (48%)
Query: 621 CGHK--AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 678
C +K + YH + QR K + ++ +I AT+AFGMGI+K DVR +I++ KS
Sbjct: 545 CDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGMGIDKHDVRLIINYGASKS 604
Query: 679 IEGYHQECGRAGRDGQRSSCVLYYSYSDFIRV-----------KHMISQGVAEQSPFTPG 727
+E ++QE GRAGRDG +S ++ YS DF++ K+ S ++ S +P
Sbjct: 605 VEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNYNKYSSSSSSSQSSQSSPL 664
Query: 728 HNRFNVANSGRVLETNTEN--LLRMVSYCENDVDCRRLLQLVHFGEKF--DSAHCKKTCD 783
+ + + + +EN LL+ N V CRR + L FGE+F D+ + +CD
Sbjct: 665 SSSSSPSQFDSLEPKKSENEKLLKFKEILINKVKCRRQMLLEAFGEEFIIDANNGCASCD 724
Query: 784 NCSKIKSFIEKDVTDTAKKLVELVK--LTGQQFSSSHI-LEVFRGSLNQYVKKHRHETLS 840
NC +++ D + + ++++++K ++ + + I + + RGS ++ + + H S
Sbjct: 725 NCVELRD--SSDYINLSFEVLQVLKCIFENKERNGTKITILILRGSHSKEINQI-HIKNS 781
Query: 841 LHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNV 900
L+G G ++ ++ + E ++E + ++LK+ Q L Q
Sbjct: 782 LYGKGSLFSEKWWKELIHQMKAESIIVEHCSSN-----FKTILKITQKGKDILNSNFQQQ 836
Query: 901 VLRFPSAINSTKLSKSDV 918
+ P I + + K ++
Sbjct: 837 KQQQPILIMNNDILKPEI 854
Score = 146 (56.5 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 69/307 (22%), Positives = 138/307 (44%)
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGEKF--DSAHCKKTCDNCSKIKSFIEKDVTD 798
++ E LL+ N V CRR + L FGE+F D+ + +CDNC +++ D +
Sbjct: 680 KSENEKLLKFKEILINKVKCRRQMLLEAFGEEFIIDANNGCASCDNCVELRD--SSDYIN 737
Query: 799 TAKKLVELVK--LTGQQFSSSHI-LEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASR 855
+ ++++++K ++ + + I + + RGS ++ + + H SL+G G ++
Sbjct: 738 LSFEVLQVLKCIFENKERNGTKITILILRGSHSKEINQI-HIKNSLYGKGSLFSEKWWKE 796
Query: 856 ILRHLVIEDFLMEEVKKS-----DVYGSVSSVLKVN--QSKAHNLIIGRQNVVLRFPSAI 908
++ + E ++E + + +L N Q K I+ N +L+ P I
Sbjct: 797 LIHQMKAESIIVEHCSSNFKTILKITQKGKDILNSNFQQQKQQQPILIMNNDILK-PE-I 854
Query: 909 NSTKLSKSDVTPAXXXXXXXXXX-PSRNDTPSQ--------PQNEVDLNLSAKLYSSLRM 959
+T+ ++++T + N+ S+ NE+D + KL+ L
Sbjct: 855 KNTQFHRNNITQQQSQQQSQKLNNDNSNNNESKLLKIEAFTKPNEID-PIVMKLFKILIE 913
Query: 960 LRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETI 1019
R L + IF TL+ +++ P T +EL +I G+ KV +G +L+ +
Sbjct: 914 FRKEL--SMFSETPTFLIFPENTLRKIAQFRPLTIDELSQIEGMDHKKVLDHGQSILKKV 971
Query: 1020 -ESTIKE 1025
E +I+E
Sbjct: 972 QEFSIQE 978
Score = 56 (24.8 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 862 IEDFLMEEVKKS-DVYGSVSSVL-KVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVT 919
+EDF E + D S+S ++ + + ++ N ++ S+ +S++ S+S +
Sbjct: 605 VEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNYNKYSSSSSSSQSSQS--S 662
Query: 920 PAXXXXXXXXXXPSRNDT--PSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGE 970
P PS+ D+ P + +NE L L + ++ R +L++ GE
Sbjct: 663 PLSSSSS-----PSQFDSLEPKKSENEKLLKFKEILINKVKCRRQMLLEAFGE 710
Score = 54 (24.1 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 13/58 (22%), Positives = 32/58 (55%)
Query: 46 DNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRD 103
+N+ ++N + + ++++ + + NN + ++ NFN N P+ + S + +NN D
Sbjct: 228 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNENNNKTNFNSN-PSITSFSNNNNNNYND 284
Score = 44 (20.5 bits), Expect = 4.5e-55, Sum P(3) = 4.5e-55
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 44 HSDNDASHN-VSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNN 100
H D+D +N + + + ++++ + NN +K + N N N + + +NN
Sbjct: 116 HIDDDYINNYIDQMNDINNNNNNKNNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNN 173
Score = 44 (20.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 50 SHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPAR 90
++N ++ +S SSS S+ S P+++ SQ F+ EP +
Sbjct: 643 NNNYNKYSSSSSSSQSSQ-SSPLSSSSSPSQ--FDSLEPKK 680
Score = 43 (20.2 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 44 HSDND---ASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVN 86
++DND S+N ++ A+ S+ S F NN + N N N
Sbjct: 199 NNDNDNIEISYNSNKIAASNISNITSVFKNNNNNNNNNNNNNNNNN 244
Score = 41 (19.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 43 EHSDNDASHNVSRRASLQSSSDGSKFS--EPMNNRQK 77
++S + +S S+ + L SSS S+F EP + +
Sbjct: 648 KYSSSSSSSQSSQSSPLSSSSSPSQFDSLEPKKSENE 684
Score = 39 (18.8 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 44 HSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVN 86
+S+ A+ N+S S+ +++ + + NN + N N N
Sbjct: 210 NSNKIAASNISNITSVFKNNNNNNNNNNNNNNNNNNNNNNNNN 252
Score = 39 (18.8 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 119 SVVANAHFKFSDGF-GNHTTEAGQIDESAEVLANKIDDDEILETID 163
S + N ++ +D F ++ T D+ N IDDD I ID
Sbjct: 83 SAINNYNYNNNDDFYDDYDTTNDYFDDFINN-DNHIDDDYINNYID 127
Score = 39 (18.8 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 32 NYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVN 86
NYI + +++N+ ++N + + +++++ + + NN + N N N
Sbjct: 124 NYIDQ--MNDINNNNNNKNNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNNNSN 176
Score = 39 (18.8 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 15/94 (15%), Positives = 41/94 (43%)
Query: 45 SDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDA 104
++N+ ++N + + ++++ + + NN + N +V++ + +NN +
Sbjct: 140 NNNNNNNNNKKNNNNNNNNNNNNNNNNNNNNNNNNSNNVSVDQQITKIINNKNNNNNNNN 199
Query: 105 GAGKGLR---GQNEIKASVVANAHFKFSDGFGNH 135
+ N+I AS ++N F + N+
Sbjct: 200 NDNDNIEISYNSNKIAASNISNITSVFKNNNNNN 233
Score = 37 (18.1 bits), Expect = 2.4e-54, Sum P(3) = 2.4e-54
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 44 HSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNE 87
+++N+ ++N + S S D + ++ +NN+ + N N N+
Sbjct: 161 NNNNNNNNNNNNNNSNNVSVD-QQITKIINNKNNNNNNNNNDND 203
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 372 (136.0 bits), Expect = 9.5e-56, Sum P(3) = 9.5e-56
Identities = 83/207 (40%), Positives = 119/207 (57%)
Query: 387 KVFGNHSFRPN-QREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
++F + +R Q + IN + DV+V +PTG GKSL YQLPA++ GIT+VISPL++
Sbjct: 171 ELFCHKKYRSRLQMQAINCILKRKCDVYVSLPTGAGKSLCYQLPAVVHGGITVVISPLIA 230
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQI L + IP L+ + E+ I+ EL + ++LY+T E VA +D +
Sbjct: 231 LMKDQISSLKRKGIPCETLNSTLTTVERSRIMGELAKEKPTIRMLYLTAEGVA-TDGTKK 289
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
L L R++L IV+DEAHCV+QWGHDFRPDY LG L+ P P +
Sbjct: 290 LLNGLANRDVLRYIVVDEAHCVTQWGHDFRPDYLTLGSLRDVCPGVPWVALTATANAKAQ 349
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMD 591
+D+ L L N F+ R NL+ D
Sbjct: 350 DDIAFQLKLRNPESFKSGTYRDNLFYD 376
Score = 290 (107.1 bits), Expect = 9.5e-56, Sum P(3) = 9.5e-56
Identities = 63/164 (38%), Positives = 91/164 (55%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A YH + R VQ++W +EI ++ ATVAFGMGI+KPDVR VIH S +++ G
Sbjct: 438 GIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGMGIDKPDVRAVIHWSPSQNLAG 497
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG+RS C +YYS D + ++S +A+ +N ++
Sbjct: 498 YYQEAGRAGRDGKRSYCRIYYSKQDKNALNFLVSGELAKLREKAKKNNAEGEKAEMQIKS 557
Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
T L +M+ YCE+ CR + + F + + CK CD C
Sbjct: 558 IQT-GLAKMLEYCES-ARCRHV-SIASFFDDTECRPCKTNCDYC 598
Score = 47 (21.6 bits), Expect = 9.5e-56, Sum P(3) = 9.5e-56
Identities = 21/83 (25%), Positives = 34/83 (40%)
Query: 948 NLSAKLYSSLRMLRTLLVKEAGEGVMAYH-IFGNATLQHLSKRVPRTEEELLEINGIGKA 1006
N+ A + S R++ K A G + ++G KR TE+ELL K
Sbjct: 607 NVEAFINSEASTGRSMFRKSASSGESGFDSVYGGG------KRGGETEDELLSAASTSKD 660
Query: 1007 KVSKYGVRLLETIESTI-KEFYK 1028
+ + + + S I +EF K
Sbjct: 661 AMDRMEQEEAKRVRSVISQEFAK 683
Score = 43 (20.2 bits), Expect = 8.9e-30, Sum P(2) = 8.9e-30
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 603 LSYGHFFLLKEFYVVSLECGHKAA 626
L YG + + K +CGHK A
Sbjct: 755 LEYGLYSISKNETTYKNKCGHKLA 778
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 387 (141.3 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 119/424 (28%), Positives = 211/424 (49%)
Query: 255 TEKLRQERLQLSK-QIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDPIRFDT 313
TE++ L +++ ++QLLE ++A+E+ S+ ++S+ + + + + D
Sbjct: 385 TERVCLMSLDITEYELQLLE--QEAKEKNLSNITSSSPEHLSSKDNEEDISYVIESDEDL 442
Query: 314 QVHLYNESEGYGNWNXXXXXXXXXDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSW 373
++ + E + + G P+E + + + +E ++ +
Sbjct: 443 EMEMLKSLENLNSGTVNPNHTKCREMEGNLGLPLEEDEDENEAV----VEEEEEEDYLLP 498
Query: 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALIC 432
+ P K++ K FG+ SF+P Q ++I++ + D V+M TG GKSL +Q P +
Sbjct: 499 E-PTAKQINCL-KTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSV 556
Query: 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492
GI LVISPL+SL++DQ++ L +NIPA FL + + +L ++ KY+++Y+T
Sbjct: 557 GGIGLVISPLISLMEDQVLQLEMSNIPACFLGS----AQSKNVLEDIKLG--KYRIVYLT 610
Query: 493 PEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPV 552
PE + + LL+ LE+ N + I +DEAHC+S+WGHDFR ++ LG LK P P+
Sbjct: 611 PEFCSGNLDLLQHLEA-NIG--ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPI 667
Query: 553 XXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL-L 611
S++ED+V+ L L + I F+RPNL+ L+VG G L
Sbjct: 668 VALTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLY---------LEVGRKTGDILQDL 718
Query: 612 KEFYVVSLECGHKAAFYHGSID--PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 669
K+F V + F +I P+++ Q ++ + C T G+ I+ +R
Sbjct: 719 KQFLVQKTSSAWE--FEGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIH---LRK 773
Query: 670 VIHH 673
+HH
Sbjct: 774 QVHH 777
Score = 279 (103.3 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 90/331 (27%), Positives = 153/331 (46%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YH + R V ++ +DEI + AT+AFGMGINK D+R VIH+ PK IE Y+QE G
Sbjct: 763 YHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIG 822
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
RAGRDG +SSC + ++ +D +H++S+ E + +A + L ++
Sbjct: 823 RAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRL---YKLKMMAKMEKYLHSSRCRR 879
Query: 748 LRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSF--IEKDVTDTAKKLVE 805
++S+ E D R+ L G + +C+ D+C + + +D A +L+
Sbjct: 880 QIILSHFE-DKQLRKA-SLGIMGTEKCCDNCRSRLDHCFSTEDSEDMSQDFGPQAFQLLS 937
Query: 806 LVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDF 865
V + G++F + RGS +Q ++ ++ + S G GK +S R LV E F
Sbjct: 938 AVTILGEKFGIGLPILFLRGSSSQRLED-KYRSHSFFGTGKDHTESWWKAFSRQLVTEGF 996
Query: 866 LMEEVKKSDVYGSVSSVLKVNQS-KAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAXXX 924
L++ V + + ++ K ++ A Q ++L+ + K S P+
Sbjct: 997 LVD-VPGQSKFVKICTLTKKGRNWLAKAKTESPQRLILQANEELCPRKFS----LPSSNA 1051
Query: 925 XXXXXXXPSRNDTPSQPQNEVDLNLSAKLYS 955
S N P + +E + K YS
Sbjct: 1052 VSSGTEQYSSNQVPVESTSEKKQSNLKKTYS 1082
Score = 46 (21.3 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 980 NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
N L ++K P T E + I+G+ + K LLE I+
Sbjct: 1152 NKILVDMAKMRPTTVENVKRIDGVSEGKAMMLAP-LLEVIK 1191
Score = 44 (20.5 bits), Expect = 2.0e-54, Sum P(4) = 2.0e-54
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 231 DMKDMLIAISNELLDNATNLSPAQTEKLRQ-ERLQL 265
D+K L +IS E++D A +L P KL +R+ +
Sbjct: 249 DVKKQLTSISEEMMDLAKHL-PDTFGKLESPQRVSM 283
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 398 (145.2 bits), Expect = 8.4e-54, Sum P(5) = 8.4e-54
Identities = 82/210 (39%), Positives = 130/210 (61%)
Query: 386 KKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+HSF+P Q ++I + ++ D V+M TG GKSL +Q P + C I++VISPL++
Sbjct: 436 KMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVISPLIA 495
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQ++ L +NIPA FL +++ R D+ +++Y+TPE + + LL
Sbjct: 496 LMEDQVLQLTMSNIPACFLGSAQTKNLNEQVKR---GDF---RVVYMTPEFCSGNIPLLV 549
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
QL+ L+A +DEAHC+SQWGHDFR Y+ LG LK+ P P S++
Sbjct: 550 QLDRTVGLSLIA---VDEAHCISQWGHDFRSAYRELGKLKKNLPTVPFLALTATASPSIR 606
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMDCEK 594
+D++++L L+N +I SF+RPNL++D +
Sbjct: 607 DDIIKSLHLINPMITCTSFDRPNLYLDVNR 636
Score = 236 (88.1 bits), Expect = 8.4e-54, Sum P(5) = 8.4e-54
Identities = 73/222 (32%), Positives = 117/222 (52%)
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVK 711
+ ATVAFGMGINK D+R VIH+ PK +E Y+QE GRAGRDG S+C + + D K
Sbjct: 770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNK 829
Query: 712 HMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGE 771
+++Q +E+ F + +A + L N+ R + C + D R L+ V G
Sbjct: 830 FILNQSKSER--FR-SYKIDMMAKMEKYL--NSTKCRRKLILCHFE-DKR--LRKVTSGI 881
Query: 772 KFDSAHCKKTCDNC-SKIKS----FIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGS 826
S+ C CDNC S + +++D A +L++ + + ++F + + RGS
Sbjct: 882 -LGSSQC---CDNCRSGVNEEDLEVLQQDFGLCAYQLMKAISVMEERFGITAPILFLRGS 937
Query: 827 LNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLME 868
+Q V + R SL G G+ ++++ + R L+ E +LME
Sbjct: 938 CSQRVPE-RFRKHSLFGIGRDVSETWWKALGRELIAEKYLME 978
Score = 59 (25.8 bits), Expect = 8.4e-54, Sum P(5) = 8.4e-54
Identities = 23/99 (23%), Positives = 40/99 (40%)
Query: 913 LSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLL--VKEAGE 970
+ K D+ R TP E+ L ++LY L R L +++
Sbjct: 1059 VKKGDLPSRSAARQTQIQTDVRAQTPGASAKEIQLQ--SELYGKLVSERQKLASIRDIPP 1116
Query: 971 GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVS 1009
++A N L +SK P T L +++G+ +AK +
Sbjct: 1117 ALLAT----NKILLDMSKLRPCTMSSLKQVDGVSEAKAA 1151
Score = 56 (24.8 bits), Expect = 8.4e-54, Sum P(5) = 8.4e-54
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 615 YVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM---GINKP 665
+ + + CG YH + QR Q Q+ +DEI + VA + G+N P
Sbjct: 681 FKLDIPCG----VYHAGLSIKQRRETQHQFMRDEIQVHAYDVAAVVSVPGVNPP 730
Score = 45 (20.9 bits), Expect = 8.4e-54, Sum P(5) = 8.4e-54
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 208 ELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNEL--LDNATNLSPAQTEKLRQERLQL 265
E+ S C+ L L D+KD+ I NEL D A L ++ L R L
Sbjct: 217 EMISGCSGSSALSLKERVFKIACDLKDLADHIPNELDCTDGAGRLVDDLSQTLTSLRCVL 276
Query: 266 S 266
S
Sbjct: 277 S 277
Score = 40 (19.1 bits), Expect = 6.4e-15, Sum P(4) = 6.4e-15
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662
K F H S P Q +Q ++ N++ +G +
Sbjct: 436 KMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSL 474
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 377 (137.8 bits), Expect = 9.0e-54, Sum P(4) = 9.0e-54
Identities = 102/302 (33%), Positives = 161/302 (53%)
Query: 376 PWTKKLEANNKKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPG 434
P K++ K FG+ SF+P Q ++I++ + D V+M TG GKSL +Q P + G
Sbjct: 599 PTAKQINCL-KTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGG 657
Query: 435 ITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494
I LVISPL+SL++DQ++ L +NIPA FL + + +L ++ KY+++Y+TPE
Sbjct: 658 IGLVISPLISLMEDQVLQLEMSNIPACFLGS----AQSKNVLEDIKLG--KYRIVYLTPE 711
Query: 495 KVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXX 554
+ + LL+ LE+ N + I +DEAHC+S+WGHDFR ++ LG LK P P+
Sbjct: 712 FCSGNLDLLQHLEA-NIG--ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVA 768
Query: 555 XXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL-LKE 613
S++ED+V+ L L + I F+RPNL+ L+VG G LK+
Sbjct: 769 LTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLY---------LEVGRKTGDILQDLKQ 819
Query: 614 FYVVSLECGHKAAFYHGSID--PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
F V + F +I P+++ Q ++ + C T G+ I+ +R +
Sbjct: 820 FLVQKTSSAWE--FEGPTIIYCPSRKMTEQVTAELKKLKLACETYHAGLSIH---LRKQV 874
Query: 672 HH 673
HH
Sbjct: 875 HH 876
Score = 285 (105.4 bits), Expect = 9.0e-54, Sum P(4) = 9.0e-54
Identities = 92/331 (27%), Positives = 154/331 (46%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YH + R V ++ +DEI + AT+AFGMGINK D+R VIH+ PK IE Y+QE G
Sbjct: 862 YHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYGAPKEIESYYQEIG 921
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
RAGRDG +SSC + ++ +D +H++S+ E + +A + L ++
Sbjct: 922 RAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRL---YKLKMMAKMEKYLHSSRCRR 978
Query: 748 LRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSF--IEKDVTDTAKKLVE 805
++S+ E D R+ L G + +C+ D+C + + +D A +L+
Sbjct: 979 QIILSHFE-DKQLRKA-SLGIMGTEKCCDNCRSRLDHCFSTEDSEDMSQDFGPQAFQLLS 1036
Query: 806 LVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDF 865
V + G++F + RGS +Q ++ ++ + S G GK +S R LV E F
Sbjct: 1037 AVTILGEKFGIGLPILFLRGSSSQRLED-KYRSHSFFGTGKDHTESWWKAFSRQLVTEGF 1095
Query: 866 LMEEVKKSDVYGSVSSVLKVNQS-KAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAXXX 924
L++ V + + ++ K ++ A Q ++L+ + K S P+
Sbjct: 1096 LVD-VPGQSKFVKICTLTKKGRNWLAKAKTESPQRLILQANEELCPRKFS----LPSSNA 1150
Query: 925 XXXXXXXPSRNDTPSQPQNEVDLNLSAKLYS 955
S N P + +E NL K YS
Sbjct: 1151 VSSGTEQYSSNQVPVESTSEKKSNLK-KTYS 1180
Score = 46 (21.3 bits), Expect = 9.0e-54, Sum P(4) = 9.0e-54
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 980 NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
N L ++K P T E + I+G+ + K LLE I+
Sbjct: 1250 NKILVDMAKMRPTTVENVKRIDGVSEGKAMMLAP-LLEVIK 1289
Score = 44 (20.5 bits), Expect = 9.0e-54, Sum P(4) = 9.0e-54
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 231 DMKDMLIAISNELLDNATNLSPAQTEKLRQ-ERLQL 265
D+K L +IS E++D A +L P KL +R+ +
Sbjct: 249 DVKKQLTSISEEMMDLAKHL-PDTFGKLESPQRVSM 283
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 583 (210.3 bits), Expect = 2.8e-53, P = 2.8e-53
Identities = 170/560 (30%), Positives = 267/560 (47%)
Query: 359 VNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTG 418
V I+ + KW+S P + L A N+ FG+ FR Q +++ + G D FVLM TG
Sbjct: 194 VPQIDEATKMKWASMTSPPQEALNALNE-FFGHKGFREKQWDVVRNVLGGKDQFVLMSTG 252
Query: 419 GGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRE 478
GKS+ YQLP+L+ +T+V+SPL+SL+ DQ+ L+ I A L G+ E ++
Sbjct: 253 YGKSVCYQLPSLLLNSMTVVVSPLISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANN 312
Query: 479 LNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA-RELLARIVIDEAHCVSQWGHDFRPDY 537
++ + + +Y++PE V + LE L + R+ ++ + IDEAHCVSQWGHDFR Y
Sbjct: 313 MH----RIRFIYMSPEMVTSQ----KGLELLTSCRKHISLLAIDEAHCVSQWGHDFRNSY 364
Query: 538 QGLGILKQKFP--NTPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEK- 594
+ L ++ + N P+ V++DV+ L L +I SF+R NL++
Sbjct: 365 RHLAEIRNRSDLCNIPMIALTATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVHSS 424
Query: 595 --VAERLQVGLSYG-----HF------FLLKEFYVVSLEC-----GHKAAFYHGSIDPAQ 636
+AE L + + HF + + V + C G ++A YH + Q
Sbjct: 425 KDMAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQ 484
Query: 637 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 696
R + +D+I I ATVAFGMGI+KPDVR VIH+ P +IE Y+QE GRAGRDG S
Sbjct: 485 REKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPS 544
Query: 697 SCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCEN 756
C ++++ D +K + N V+E N +LR +
Sbjct: 545 ICRVFWAPKDLNTIKFKLR----------------NSQQKEEVVE-NLTMMLRQLELVLT 587
Query: 757 DVDCRRLLQLVHFGEKFDSAHCKKT--CDNCSKI------KSFIEKDVTDTAKKLVELV- 807
V CRR L HF + + CD C+++ S DVT +K L +++
Sbjct: 588 TVGCRRYQLLKHFDPSYAKPPTMQADCCDRCTEMLNGNQDSSSSIVDVTTESKWLFQVIN 647
Query: 808 KLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLM 867
++ + +E RGS + + L G GKH+ + L I +L
Sbjct: 648 EMYNGKTGIGKPIEFLRGSSKEDWRIKTTSQQKLFGIGKHIPDKWWKALAASLRIAGYLG 707
Query: 868 EEVKKSDVYGSVSSVLKVNQ 887
E +GS ++ ++ +
Sbjct: 708 EVRLMQMKFGSCITLSELGE 727
Score = 246 (91.7 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 108/429 (25%), Positives = 175/429 (40%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G ++A YH + QR + +D+I I ATVAFGMGI+KPDVR VIH+ P +IE
Sbjct: 470 GVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIES 529
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG S C ++++ D +K + ++ V N +L
Sbjct: 530 YYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQQKEEV---------VENLTMMLR 580
Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKI------KSFIEKD 795
E +L V C + + A C CD C+++ S D
Sbjct: 581 -QLELVLTTVG-CRR-YQLLKHFDPSYAKPPTMQADC---CDRCTEMLNGNQDSSSSIVD 634
Query: 796 VTDTAKKLVELV-KLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEAS 854
VT +K L +++ ++ + +E RGS + + L G GKH+
Sbjct: 635 VTTESKWLFQVINEMYNGKTGIGKPIEFLRGSSKEDWRIKTTSQQKLFGIGKHIPDKWWK 694
Query: 855 RILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQS---KAHNLIIGRQNVVLR------FP 905
+ L I +L E +GS ++ ++ + + I ++L+ P
Sbjct: 695 ALAASLRIAGYLGEVRLMQMKFGSCITLSELGERWLLTGKEMKIDATPILLQGKKEKAAP 754
Query: 906 SAINSTKLSKSDVTPAXXXXXXXXXXPSRNDTPSQPQNEVDLNLSAK----LYSSLRMLR 961
S + S+S + R P+ +NE +NL + L + LR
Sbjct: 755 STVPGASRSQSTKSSTEIPTKILGANKIREYEPAN-ENEQLMNLKKQEVTGLPEKIDQLR 813
Query: 962 TLL----VKEAG-EGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLL 1016
+ L V A V + I N L + P + L I+G+ + S+YG R +
Sbjct: 814 SRLDDIRVGIANMHEVAPFQIVSNTVLDCFANLRPTSASNLEMIDGMSAQQKSRYGKRFV 873
Query: 1017 ETIESTIKE 1025
+ + KE
Sbjct: 874 DCVVQFSKE 882
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 371 (135.7 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 100/292 (34%), Positives = 156/292 (53%)
Query: 386 KKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+ SF+P Q ++I++ + D V+M TG GKSL +Q P + I +VISPL+S
Sbjct: 505 KTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLIS 564
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQ++ L +N+PA L + + IL ++ KY+++Y+TPE + + LL+
Sbjct: 565 LMEDQVLQLELSNVPACLLGS----AQSKNILGDVKLG--KYRVIYITPEFCSGNLDLLQ 618
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
QL+S L+A +DEAHC+S+WGHDFR ++ LG LK P PV S++
Sbjct: 619 QLDSSIGITLIA---VDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIR 675
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL-LKEFYVVSLECGH 623
ED++ L L + I F+RPNL+ L+VG G+ LK F V
Sbjct: 676 EDIISCLNLKDPQITCTGFDRPNLY---------LEVGRKTGNILQDLKPFLVRKASSAW 726
Query: 624 KAAFYHGSID--PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
+ F +I P+++ Q ++N+ C T GM I++ R +HH
Sbjct: 727 E--FEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISE---RKDVHH 773
Score = 276 (102.2 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 81/260 (31%), Positives = 136/260 (52%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YH + ++R V ++ +DEI + ATVAFGMGINK D+R VIH+ PK +E Y+QE G
Sbjct: 759 YHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIG 818
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
RAGRDG +SSC L ++ +DF ++++ + + ++ F + V + L ++
Sbjct: 819 RAGRDGLQSSCHLLWAPADFNTSRNLLIE-IHDEK-FRLYKLKMMVKME-KYLHSSQCRR 875
Query: 748 LRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIE--KDVTDTAKKLVE 805
++S+ E+ C + L G + +C+ ++C + + +D A +L+
Sbjct: 876 RIILSHFEDK--CLQKASLDIMGTEKCCDNCRPRLNHCLTANNSEDASQDFGPQAFQLLS 933
Query: 806 LVKLTGQQFSSSHILEVFRGSLNQYVK-KHRHETLSLHGAGKHLAKSEASRILRHLVIED 864
V + ++F + RGS +Q + K+R L GAGK A+S + HL+ E
Sbjct: 934 AVDILQEKFGIGIPILFLRGSNSQRLPDKYRGHRL--FGAGKEQAESWWKTLSHHLIAEG 991
Query: 865 FLMEEVKKSDVYGSVSSVLK 884
FL+E V K + Y S+ K
Sbjct: 992 FLVE-VPKENKYIKTCSLTK 1010
Score = 58 (25.5 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 932 PSRNDTPSQPQ-NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFG-NATLQHLSKR 989
P + +P +P + +L+ LY+ L R K A + + I N L ++K
Sbjct: 1099 PGTSSSPLEPAISAQELDARTGLYARLVEARQ---KHANKMDVPPAILATNKVLLDMAKM 1155
Query: 990 VPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
P T E + +I+G+ + K + LLE I+
Sbjct: 1156 RPTTVENMKQIDGVSEGKAALLAP-LLEVIK 1185
Score = 40 (19.1 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 43 EHSDNDASHNVSRRASLQSSSDGSKF----SEPMNNRQKGSQINFN--VNEPARCT 92
E ND SH +S S + S + E + S N N V EP T
Sbjct: 404 EEKYNDVSHQLSEHLSPNDDENDSSYIIESDEDLEMEMLKSLENLNSDVVEPTHST 459
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 375 (137.1 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
Identities = 77/197 (39%), Positives = 115/197 (58%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQ 455
P QR++I A + GHDVF+ T GKSL YQLPA+ G+T+V+ PL+SL+ DQ+ L
Sbjct: 8 PLQRDVIAAAVEGHDVFLQASTSFGKSLCYQLPAMTTHGVTVVVCPLLSLMTDQVNALQA 67
Query: 456 ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515
+P ++ + E++ IL +L S + + +LLYVTPE + +++ R L++++ + L
Sbjct: 68 LGVPVATINSTVSLAERRVILEDLLSGHPRIRLLYVTPE-LCQNNTFRRNLQTMHKQREL 126
Query: 516 ARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPV--XXXXXXXXXSVKEDVVQALGL 573
RI IDEAHC+S+WGHDFRP Y+ L + N PV V+ D++ LGL
Sbjct: 127 VRIAIDEAHCISEWGHDFRPAYKALSWFRHSLTNPPVPISALTATATSQVRTDIINILGL 186
Query: 574 V--NCIIFRQSFNRPNL 588
IF RPN+
Sbjct: 187 NPRRLKIFSTPSARPNI 203
Score = 224 (83.9 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
Identities = 57/165 (34%), Positives = 83/165 (50%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDE--------------INIICATVAFGMGINKPDVRF 669
+A YH + A R VQ +W + II AT AFGMGI+ P+VRF
Sbjct: 281 RAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPGAKPVTFYIIVATTAFGMGIDNPEVRF 340
Query: 670 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHN 729
V+H S P++ EG+ QE GRAGRDG+ ++ ++YYS + RV + + + + + T G N
Sbjct: 341 VVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYSLQERERVLNHLRRDIENVNNSTGGRN 400
Query: 730 R-FNVANSG--RVLETNTENLLRMVSYCENDVDCRRLLQLVHFGE 771
N R L ++ ++V YCE CR L FG+
Sbjct: 401 AGLNQDKVSLLRNLYARKQSFEKVVRYCETTTRCRHELIKEFFGD 445
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 370 (135.3 bits), Expect = 7.0e-51, Sum P(2) = 7.0e-51
Identities = 84/210 (40%), Positives = 118/210 (56%)
Query: 386 KKVFGNHSFRPNQRE--IINATMSGHDVFVLMPTGGGKSLTYQLPALICPG-ITLVISPL 442
KK FG+ F+ + +E + A DV+V MPTG GKSL +QLP L+ IT+V SPL
Sbjct: 12 KKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSPL 71
Query: 443 VSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVL 502
++LI+DQI HL + +PA L+ M E+ ++ +L + K LY+TPE+ A +
Sbjct: 72 LALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAA-TKFF 130
Query: 503 LRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXS 562
L++L+ LA +DEAHCVSQWGHDFRPDY LG L+ K+ +
Sbjct: 131 QDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASRE 190
Query: 563 VKEDVVQALGLVNCII-FRQSFNRPNLWMD 591
VKED+ + L L + F R NL+ D
Sbjct: 191 VKEDIYKQLRLHQPVAQFSTPSFRKNLFYD 220
Score = 251 (93.4 bits), Expect = 7.0e-51, Sum P(2) = 7.0e-51
Identities = 56/168 (33%), Positives = 83/168 (49%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A YH + +R VQ+ W + + IICAT +FGMG++KP VRFVIH +P+++
Sbjct: 280 GIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAA 339
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG +S C LYY D ++ ++ H + + E
Sbjct: 340 YYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDA---------HRARGRGDKELLTE 390
Query: 742 TNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIK 789
+ ++ +CE CR L FG+ + C CD C + K
Sbjct: 391 RAIKQFEKITEFCERTT-CRHKLFSDFFGDP--TPDCSGQCDVCKRPK 435
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 525 (189.9 bits), Expect = 7.9e-51, Sum P(2) = 7.9e-51
Identities = 106/205 (51%), Positives = 139/205 (67%)
Query: 370 WSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA 429
+ S +FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQLPA
Sbjct: 333 FQSLNFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPA 392
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
+ G+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ KLL
Sbjct: 393 CVSSGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLL 452
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPEKV S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFRPDY+ + +L+QKFP+
Sbjct: 453 YVTPEKVCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPS 512
Query: 550 TPVXXXXXXXXXSVKEDVVQALGLV 574
PV V++D++ L ++
Sbjct: 513 VPVMALTATANPRVQKDILTQLKIL 537
Score = 40 (19.1 bits), Expect = 7.9e-51, Sum P(2) = 7.9e-51
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 17 EKAWHTLSSLQISRRNY--IRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNN 74
E H L++ + S Y I+ G PV+ S + + S++ FSE ++N
Sbjct: 257 ENMMHNLAASKSSTAVYQPIKEG--RPVKSVSERISSAKTDSLPVASTAQNKNFSESIHN 314
Query: 75 RQKGSQIN 82
S+ N
Sbjct: 315 YTDKSEQN 322
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 361 (132.1 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 88/289 (30%), Positives = 150/289 (51%)
Query: 386 KKVFGNHSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+ SF+P Q ++I++ + D V+M TG GKSL YQ P + G +VI PL+S
Sbjct: 452 KTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGIVICPLIS 511
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQ++ L + I + L + +++ + + Y+++Y+TPE + + LL+
Sbjct: 512 LMEDQVLQLTMSGISSCLLGS----AQSKDVKDNIKAGL--YRVIYMTPEFCSGNLELLQ 565
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
++ +A I +DEAHC+S+WGHDFR ++ L LK+ P+ P+ S++
Sbjct: 566 DIDRTTG---IALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTATASPSIR 622
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHK 624
ED+V L L N + SF+RPNL+++ + + L FL ++ + E
Sbjct: 623 EDIVNCLNLKNPQVTCTSFDRPNLYLEVGRQSGNTLRDLKQ---FLTRKGSSSTYEFEGP 679
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
Y P+++A Q + +++ + C GMGI K R HH
Sbjct: 680 TIIYC----PSRKATEQVMFELNKLGVTCGAYHAGMGIQK---RRDTHH 721
Score = 261 (96.9 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 70/242 (28%), Positives = 124/242 (51%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YH + +R Q+ +DEI + ATVAFGMGINK D+R VIH+ PK +E Y+QE G
Sbjct: 707 YHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINKADIRMVIHYGAPKEMESYYQEIG 766
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
RAGRDG +SC + ++ +D + + ++++ E+ + + + L +N+
Sbjct: 767 RAGRDGLPASCHVLWTAADLVLNRRLLNEIHNEKFRL---YKLKMLEKMEKYLSSNSCRS 823
Query: 748 LRMVSYCENDVDCRRLLQ-LVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVEL 806
++S+ E D R++ ++ E D+ C+ +C S +D A +L+
Sbjct: 824 RIILSHFE-DKQLRKVSSGIMGTEECCDNCRCRTSCLATSSDSDGGLQDFGKQAYQLLSA 882
Query: 807 VKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFL 866
V ++F + + RGS +Q + R+ L+G+GK ++ + + L++E FL
Sbjct: 883 VSALEEKFGTRVPILFLRGSNSQRLPD-RYRKHPLYGSGKDWTENWWKSLSQQLIMEGFL 941
Query: 867 ME 868
E
Sbjct: 942 RE 943
Score = 53 (23.7 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 23 LSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPM----NNRQKG 78
L + Q++ ++ RP L V + ++ + + + SS +F P +R+
Sbjct: 631 LKNPQVTCTSFDRPNLYLEVGRQSGNTLRDLKQFLTRKGSSSTYEFEGPTIIYCPSRKAT 690
Query: 79 SQINFNVNEPARCTGSFHLSNNVR 102
Q+ F +N+ G++H ++
Sbjct: 691 EQVMFELNKLGVTCGAYHAGMGIQ 714
Score = 51 (23.0 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 932 PSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFG-NATLQHLSK-R 989
P R P E +L + LY L R K A E V+ + N L +++ R
Sbjct: 1052 PLRPRVPVVSSRENELETA--LYGKLLTARQ---KVANEKVIPPAVLATNKILVEMARMR 1106
Query: 990 V-PRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEF 1026
P T E + I+G+ +AK + + L E IKEF
Sbjct: 1107 TRPTTVENVKRIDGVSEAKATMLVLLLAE-----IKEF 1139
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 330 (121.2 bits), Expect = 6.2e-50, Sum P(3) = 6.2e-50
Identities = 76/190 (40%), Positives = 112/190 (58%)
Query: 431 ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
+ GIT+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L + + K+LY
Sbjct: 41 VVKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILY 100
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
+TPE A S L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ + +
Sbjct: 101 ITPEMAASSS-FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHA 159
Query: 551 PVXXXXXXXXXSVKEDVVQALGLVNCI-IFRQSFNRPNLWMDCEKVAERLQVGLSYGHFF 609
P V+EDV AL L + IF+ R NL+ D + + L + YG+
Sbjct: 160 PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQ--FKEL-ISDPYGN-- 214
Query: 610 LLKEFYVVSL 619
LK+F + +L
Sbjct: 215 -LKDFCLKAL 223
Score = 283 (104.7 bits), Expect = 6.2e-50, Sum P(3) = 6.2e-50
Identities = 63/174 (36%), Positives = 98/174 (56%)
Query: 613 EFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 671
E + L C G A YH + ++R VQ W ++++ +I AT++FGMG++K +VRFV
Sbjct: 246 EQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVA 305
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRF 731
H ++ KS+ GY+QE GRAGRDG+ S C LYYS +D +V +I + VA+ R
Sbjct: 306 HWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ-----EKRG 360
Query: 732 NVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNC 785
N A+ + +V++CE ++ CR +FG+ + C K CD+C
Sbjct: 361 NKASDKATIMAFDA----LVTFCE-ELGCRHAAIAKYFGDALPA--CAKGCDHC 407
Score = 48 (22.0 bits), Expect = 6.2e-50, Sum P(3) = 6.2e-50
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 375 FPWT--KKLEANNKKVFGNHSFR-PNQREIINATMSGHDVFV 413
FP+ +++ + KKVFG SF+ P Q A + G + V
Sbjct: 8 FPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGITIVV 49
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 334 (122.6 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 91/291 (31%), Positives = 145/291 (49%)
Query: 386 KKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+ SF+P Q ++I++ + D V+M TG GKSL +Q P + I +VISPL+S
Sbjct: 550 KTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLIS 609
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYV--TPEKVAKSDVL 502
L++DQ++ L +NIPA L + + IL ++ KYK++ V T +
Sbjct: 610 LMEDQVLQLEMSNIPACLLGS----AQPKNILGDIKLQ-SKYKVVEVWFTYQYCMNQ--- 661
Query: 503 LRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXS 562
R ++ + I +DEAHC+S+WGHDFR ++ LG LK P PV S
Sbjct: 662 FRMIQEARCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSS 721
Query: 563 VKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECG 622
++ED+++ L L + I F+RPNL+++ E+ + L F + K E G
Sbjct: 722 IREDIIRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLK--PFLVRKTSSAWEFE-G 778
Query: 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
+ P+++ Q ++N+ C GM I++ R IHH
Sbjct: 779 PTIIYC-----PSRKVTEQVTVELGKLNVACQAYHAGMKISE---RKDIHH 821
Score = 285 (105.4 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 88/322 (27%), Positives = 151/322 (46%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YH + ++R + ++ +DEI + AT+AFGMGINK D+R VIH+ PK +E Y+QE G
Sbjct: 807 YHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKADIRKVIHYGAPKEMESYYQEIG 866
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
RAGRDG +SSC L ++ +DF ++ + + E+ H + + L ++
Sbjct: 867 RAGRDGLQSSCHLLWAPADFNTTRNRLIEIHNEKFRL---HKLKMMVKMEKYLHSSRCRR 923
Query: 748 LRMVSYCENDVDCRRLLQ--LVHFGEKFDSAHCKKTCDNCSKIKSFIE--KDVTDTAKKL 803
++S+ E+ +RL + L G + +C+ ++CS + + +D A +L
Sbjct: 924 QIILSHFED----KRLQKASLAVMGTEKCCDNCRPRLNHCSSANNSEDTAQDFGPQAFQL 979
Query: 804 VELVKLTGQQFSSSHILEVFRGSLNQYV--KKHRHETLSLHGAGKHLAKSEASRILRHLV 861
+ V + ++F + RGS +Q + K H H L GAGK A+S + HL+
Sbjct: 980 LSAVDILQEKFGIKIPILFLRGSNSQRLPEKYHNHR---LFGAGKEQAESWWKALSHHLI 1036
Query: 862 IEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPA 921
E FL+E K++ + S K + ++ ++VL+ S K S P
Sbjct: 1037 AEGFLVEVPKQNKFIKTCSLTKKGRKWLGEAILQSPPSLVLQADEEAFSRKALLSSSNPV 1096
Query: 922 XXXXXXXXXXPSRNDTPSQPQN 943
+ +Q N
Sbjct: 1097 SSETKPHSSNQKPTGSSTQQSN 1118
Score = 51 (23.0 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 980 NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEF 1026
N L ++K P T E + +I+G+ + K + LL + IK F
Sbjct: 1194 NKVLLDMAKMRPTTVENVKQIDGVSEGKAA-----LLAPLTEVIKHF 1235
Score = 38 (18.4 bits), Expect = 4.9e-49, Sum P(4) = 4.9e-49
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 171 HYHSSCTPKPSISRLPSITPNAGNDKFARQDETC-LPPELCSICNHGCKLGLCPETSSHI 229
H+ +C ++ R+P I N + C L +C+ + G KL P SH+
Sbjct: 268 HFPVTCRNLETLQRVPMILENIS-------ENLCSLRKVICASTDTGTKLE--PGGGSHL 318
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 511 (184.9 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 120/345 (34%), Positives = 191/345 (55%)
Query: 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVI 439
KLE K FG FRP Q+ +I + G DV ++PTG GKS+ YQ P L+ G LV+
Sbjct: 2 KLEEYLYKWFGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLVV 61
Query: 440 SPLVSLIQDQIMHLLQANIPATFLSGNMEWT--EQQEILRELNSDYCKYKLLYVTPEKVA 497
SPL+SL++DQ+ L + ++ N T E++E +++L+S YK ++V+PE +
Sbjct: 62 SPLLSLMEDQVTQLKYV-VKDRVIAFNSFRTLNEKREAMKKLSS----YKFIFVSPEML- 115
Query: 498 KSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXX 557
+S++L+R+L+ ++ ++ V+DEAHC+SQWG+DFRPDY+ L ++ + + V
Sbjct: 116 QSELLIRELKKIH----ISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTVLALTA 171
Query: 558 XXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC---EKVAERLQVGLS---Y----GH 607
V +D+ +L L S +RPN+ MD E + E+ + L Y G
Sbjct: 172 TATKGVLQDIADSLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLEQVMYLQGPGI 231
Query: 608 FFLLKEFYVVSLE--CGHKA----AFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661
+ + L K AFYHG ++ +R +Q+Q+ +++ ++ T AFGMG
Sbjct: 232 VYCSSRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMG 291
Query: 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
+NK + R++IH P +I Y QE GRAGRDG+ S +L S D
Sbjct: 292 VNKANTRYIIHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLD 336
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 491 (177.9 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 124/326 (38%), Positives = 175/326 (53%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG FRP Q E+I ++G + PTG GKSL YQ AL P +TLV+SPL++LI+D
Sbjct: 22 FGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLALIKD 81
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L Q I A + + + Q+++RE S + KLL V+ E+ K++ + ++S
Sbjct: 82 QLNFLQQKGIKAASIDSTLTPEQTQQVMREARSG--QLKLLMVSVERF-KNERFRQFIQS 138
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
+ L+ +V+DEAHC+S+WGH+FRPDY L ++ V VK+D+
Sbjct: 139 IP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCRELSIPLVLLLTATATRKVKQDMA 194
Query: 569 QALGLVNCIIFRQSFNRPNLWMDCEKVA---------ERLQ----VGLSYGHFFLLKEFY 615
+ I + F R NL + VA ++LQ G+ Y E
Sbjct: 195 IRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDGAGIVYVTLQHTAE-E 253
Query: 616 VVSLEC--GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
V S C G A YH D +R +Q + + I+ AT+AFGMGI+K ++RFVIH+
Sbjct: 254 VASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHY 313
Query: 674 SLPKSIEGYHQECGRAGRDGQRSSCV 699
LPKSIE Y QE GRAGRDGQ S CV
Sbjct: 314 DLPKSIENYCQEIGRAGRDGQLSHCV 339
Score = 38 (18.4 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 773 FDSAHCKKTCDNCSKIKSFIEK 794
FD K+C +CS + + K
Sbjct: 552 FDDNAAPKSCGHCSVCRGQVAK 573
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 491 (177.9 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 124/326 (38%), Positives = 175/326 (53%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG FRP Q E+I ++G + PTG GKSL YQ AL P +TLV+SPL++LI+D
Sbjct: 22 FGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLALIKD 81
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L Q I A + + + Q+++RE S + KLL V+ E+ K++ + ++S
Sbjct: 82 QLNFLQQKGIKAASIDSTLTPEQTQQVMREARSG--QLKLLMVSVERF-KNERFRQFIQS 138
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVV 568
+ L+ +V+DEAHC+S+WGH+FRPDY L ++ V VK+D+
Sbjct: 139 IP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCRELSIPLVLLLTATATRKVKQDMA 194
Query: 569 QALGLVNCIIFRQSFNRPNLWMDCEKVA---------ERLQ----VGLSYGHFFLLKEFY 615
+ I + F R NL + VA ++LQ G+ Y E
Sbjct: 195 IRFDIKPQHIVQTGFYRSNLDLTVLPVASENKLRILKQQLQSFDGAGIVYVTLQHTAE-E 253
Query: 616 VVSLEC--GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
V S C G A YH D +R +Q + + I+ AT+AFGMGI+K ++RFVIH+
Sbjct: 254 VASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRFVIHY 313
Query: 674 SLPKSIEGYHQECGRAGRDGQRSSCV 699
LPKSIE Y QE GRAGRDGQ S CV
Sbjct: 314 DLPKSIENYCQEIGRAGRDGQLSHCV 339
Score = 38 (18.4 bits), Expect = 6.1e-47, Sum P(2) = 6.1e-47
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 773 FDSAHCKKTCDNCSKIKSFIEK 794
FD K+C +CS + + K
Sbjct: 552 FDDNAAPKSCGHCSVCRGQVAK 573
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 441 (160.3 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 102/260 (39%), Positives = 147/260 (56%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
G A YH + + R VQ +W ++D +ICAT+AFGMGI+KPDVRFVIH SLPKS+E
Sbjct: 9 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 68
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL 740
GY+QE GRAGRDG+ S C+L+Y+Y D R+K +I + E+ G++
Sbjct: 69 GYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLI---LMEKD----GNHHTK-------- 113
Query: 741 ETNTENLLRMVSYCENDVDCRRLLQLVHFGE-KFDSAHCKK----TCDNCSKIKSFIEKD 795
ET+ NL MV YCEN +CRR+ L +FGE +F+ CKK +CDNC K K + +D
Sbjct: 114 ETHFNNLYSMVHYCENIAECRRIQLLAYFGENEFNPNFCKKYPDVSCDNCCKTKDYKTRD 173
Query: 796 VTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYV-----KKHRHETLSLHGAGKHLAK 850
VTD K +V V+ + +I R ++N V K + G G ++
Sbjct: 174 VTDDVKNIVRFVQEHSSSRGARNIGSSGRFTMNMLVDIFLGSKSAKLQSGIFGKGSAYSR 233
Query: 851 SEASRILRHLVIEDFLMEEV 870
A R+ + L+++ L E++
Sbjct: 234 HNAERLFKKLILDKILDEDL 253
Score = 86 (35.3 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 962 TLLVKEAGE--GVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETI 1019
T + K G+ GV ++IF TL+ L++ + E LL+I+G+ + K+ KYG ++ +
Sbjct: 317 TEVCKSLGKVFGVHYFNIFNTTTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVIPIL 376
Query: 1020 E 1020
+
Sbjct: 377 Q 377
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 338 (124.0 bits), Expect = 7.3e-45, Sum P(3) = 7.3e-45
Identities = 91/281 (32%), Positives = 146/281 (51%)
Query: 342 VSSYPVE-REPFIPKIIKVN-YIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQR 399
VS + E R+ P ++ + + EG S W K++ + + FG S R QR
Sbjct: 115 VSEHSEEVRKSLAPVFMESSCFPEGQLLNGCSEASSSWEKRVNSILRNRFGISSLRSFQR 174
Query: 400 EIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIP 459
E ++ ++ D VL TG GKSL +Q+PAL+ + +VISPL+SL+ DQ + L + +
Sbjct: 175 EALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKVS 234
Query: 460 ATFL-SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518
A FL SG ++ +++ ++ + Y+++YV PE V + L++ L+ L +A
Sbjct: 235 ACFLGSGQLDNCIEEKAMQGM------YQIIYVCPETVVR---LIKPLQKLAKTHGIALF 285
Query: 519 VIDEAHCVSQWGHDFRPDYQGLGILKQKFP---------NTPVXXXXXXXXXSVKEDVVQ 569
IDEAHCVS+WGHDFRP Y+ L +L++ F + P+ +V+ED+++
Sbjct: 286 AIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILE 345
Query: 570 ALGLVN-CIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFF 609
+L L I SF RPNL + R + SY F
Sbjct: 346 SLHLSKETKIVLTSFFRPNLQFSVKH--SRTKFASSYAKDF 384
Score = 194 (73.4 bits), Expect = 7.3e-45, Sum P(3) = 7.3e-45
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KAA Y+ S+ V + + +++ ++ AT+AFGMGI+K +VR +IH+ +S+E
Sbjct: 521 GLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEA 580
Query: 682 YHQECGRAGRDGQRSSCVLYYSYS 705
Y+QE GRAGRDG+ + CVLY S
Sbjct: 581 YYQEAGRAGRDGELAECVLYADLS 604
Score = 77 (32.2 bits), Expect = 7.3e-45, Sum P(3) = 7.3e-45
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 744 TENLLRMVSYC----ENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDT 799
TE +M+S C N CR + + +FGE+F S C +CD C++ + DV +
Sbjct: 619 TEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKCN-SCDVCTEGPPELV-DVREE 676
Query: 800 AKKLVELV 807
A L +++
Sbjct: 677 ANLLFQVI 684
Score = 51 (23.0 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 26/131 (19%), Positives = 54/131 (41%)
Query: 15 EVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNN 74
++ ++ H +I ++ RP L V+HS + + ++ Q+ D +SE N+
Sbjct: 342 DILESLHLSKETKIVLTSFFRPNLQFSVKHSRTKFASSYAK--DFQNLVD--LYSEKKNS 397
Query: 75 RQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFKFSDGFGN 134
K + +E GS H S N+ + + Q A ++ + S+ +
Sbjct: 398 TGKKLAVISRESEEQTDFGS-HDSENIHETDYDEDEEDQENSLAKKNSSNGKELSEAYLE 456
Query: 135 HTTEAGQ-IDE 144
T+ Q +D+
Sbjct: 457 DETDIFQSVDD 467
Score = 38 (18.4 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 29 SRRNYIRPGLSTPVEHSD 46
S R++ R LST V H D
Sbjct: 168 SLRSFQREALSTWVAHKD 185
Score = 37 (18.1 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 664 KPDVRFVIHHSLPKSIEGYHQE 685
+P+++F + HS K Y ++
Sbjct: 362 RPNLQFSVKHSRTKFASSYAKD 383
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 338 (124.0 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 83/216 (38%), Positives = 123/216 (56%)
Query: 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--IC-PGIT 436
K+E KK FG + + Q E ++AT D F++M TG GKSL YQ+P+L +C T
Sbjct: 38 KMEITQKKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFT 97
Query: 437 LVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496
+VISPL+SL++DQ+ +L + I + FL G+ + +IL E+ YK++Y +PE
Sbjct: 98 IVISPLISLMKDQVDNLNRKRISSVFL-GSGQKMNNNKILNEIKHGI--YKIVYCSPEYA 154
Query: 497 AKS-DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXX 555
+ DV + L R LL I IDE HC+S+WGHDFRP Y+ L L+ P+
Sbjct: 155 LNNKDVFIL----LKNRILL--IAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCL 208
Query: 556 XXXXXXSVKEDVVQALG--LVNCIIFRQSFNRPNLW 589
+V+ D+++ L L NC+I R S N+ NL+
Sbjct: 209 TATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLF 244
Score = 224 (83.9 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 66/245 (26%), Positives = 115/245 (46%)
Query: 564 KEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGH 623
K D+ L + I ++S R ++D K+ + + Y E G
Sbjct: 250 KTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNSTLIYVNSKKECESVYSFLKEKGL 309
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 683
YH + Q+ +++ KDEI II ATVAFGMGI+KPD+R +IH+ +S+E Y
Sbjct: 310 LVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGMGIDKPDIRRIIHYGFARSLEAYV 369
Query: 684 QECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQGVAE---QSPFTPGHNRFNVANSGRV 739
Q+ GRAGRD + +L++ +D ++K++I + A ++ F + ++
Sbjct: 370 QQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTANNLIETNFQRVEHIVHIFTQASD 429
Query: 740 LETNTE-NLLRMVSYCEN------DVDC---RRLLQLVHFGEKFDSAHCKKTCDNCSKIK 789
+T ++ Y + D+D +R + ++ +K+D C K CDNC
Sbjct: 430 YAYSTACRRKKIYEYFDEAPLTSYDIDIFNDKRNEGICYYIKKYDIYLCGK-CDNCVYCL 488
Query: 790 SFIEK 794
+ I+K
Sbjct: 489 NLIKK 493
Score = 63 (27.2 bits), Expect = 3.7e-26, Sum P(3) = 3.7e-26
Identities = 40/196 (20%), Positives = 80/196 (40%)
Query: 728 HNRFNV-ANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCS 786
+N N+ +NS N+ N R Y +ND+ L+ + + + + N S
Sbjct: 507 NNNINIYSNSNNNNNINSNNNSREY-YLDNDIKKETSLKSL-------TCYYISSSSN-S 557
Query: 787 KIKSFIEKDVTDTAKKLVELVK----LTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLH 842
S+I +V D +L L+ L G+ S+ + + + +KK+ H + +
Sbjct: 558 SFSSYIFDNVVDLTNELKTLLNCISSLKGKTGLSTVCKILVKSKESSIIKKNYHN-IKEY 616
Query: 843 GAGKHLAKSEASRILRHLVIEDFLMEEVK--KSDVYGSVSSVLKVNQSKAHNLIIGRQNV 900
G G H + + S ++ + + F+ E + K Y SV K I ++
Sbjct: 617 GKGAHKSTNWWSSFMKVVRNDKFIKETLNCGKEMCYISVGVT-----DKGEEFIQSKEKY 671
Query: 901 VLRFPSAINSTKLSKS 916
++ P +N++ S +
Sbjct: 672 IIALPFFLNTSPKSSN 687
Score = 44 (20.5 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 572 GLVNCIIFRQSFNRPN 587
G NCII +++ NR N
Sbjct: 810 GNTNCIINKENINRDN 825
Score = 39 (18.8 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 1086 NHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNN 1121
N N +++E + ++YEY+ NN
Sbjct: 820 NINRDNNFEKTHKNNIEKYEYIESYQKQKNNNKNNN 855
Score = 39 (18.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 48 DASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSN 99
D N++R+ + S GS + MNN + ++I + + C+ + L+N
Sbjct: 109 DQVDNLNRKR-ISSVFLGS--GQKMNNNKILNEIKHGIYKIVYCSPEYALNN 157
Score = 38 (18.4 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 272 LEGYRQAEE-RQKSHFSASTTRTYQYETPQPAVLKID 307
LE R E QK HF + +Q E K D
Sbjct: 32 LEELRMKMEITQKKHFGYKNLKDFQVEAVHATFHKKD 68
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 338 (124.0 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 83/216 (38%), Positives = 123/216 (56%)
Query: 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--IC-PGIT 436
K+E KK FG + + Q E ++AT D F++M TG GKSL YQ+P+L +C T
Sbjct: 38 KMEITQKKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFT 97
Query: 437 LVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496
+VISPL+SL++DQ+ +L + I + FL G+ + +IL E+ YK++Y +PE
Sbjct: 98 IVISPLISLMKDQVDNLNRKRISSVFL-GSGQKMNNNKILNEIKHGI--YKIVYCSPEYA 154
Query: 497 AKS-DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXX 555
+ DV + L R LL I IDE HC+S+WGHDFRP Y+ L L+ P+
Sbjct: 155 LNNKDVFIL----LKNRILL--IAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCL 208
Query: 556 XXXXXXSVKEDVVQALG--LVNCIIFRQSFNRPNLW 589
+V+ D+++ L L NC+I R S N+ NL+
Sbjct: 209 TATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLF 244
Score = 224 (83.9 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 66/245 (26%), Positives = 115/245 (46%)
Query: 564 KEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGH 623
K D+ L + I ++S R ++D K+ + + Y E G
Sbjct: 250 KTDIYHDLKDILDIPLKESIERTKKFIDNSKICSYNSTLIYVNSKKECESVYSFLKEKGL 309
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 683
YH + Q+ +++ KDEI II ATVAFGMGI+KPD+R +IH+ +S+E Y
Sbjct: 310 LVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFGMGIDKPDIRRIIHYGFARSLEAYV 369
Query: 684 QECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQGVAE---QSPFTPGHNRFNVANSGRV 739
Q+ GRAGRD + +L++ +D ++K++I + A ++ F + ++
Sbjct: 370 QQVGRAGRDNSDAEAILFFHINDESKIKNIILRENTANNLIETNFQRVEHIVHIFTQASD 429
Query: 740 LETNTE-NLLRMVSYCEN------DVDC---RRLLQLVHFGEKFDSAHCKKTCDNCSKIK 789
+T ++ Y + D+D +R + ++ +K+D C K CDNC
Sbjct: 430 YAYSTACRRKKIYEYFDEAPLTSYDIDIFNDKRNEGICYYIKKYDIYLCGK-CDNCVYCL 488
Query: 790 SFIEK 794
+ I+K
Sbjct: 489 NLIKK 493
Score = 63 (27.2 bits), Expect = 3.7e-26, Sum P(3) = 3.7e-26
Identities = 40/196 (20%), Positives = 80/196 (40%)
Query: 728 HNRFNV-ANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCS 786
+N N+ +NS N+ N R Y +ND+ L+ + + + + N S
Sbjct: 507 NNNINIYSNSNNNNNINSNNNSREY-YLDNDIKKETSLKSL-------TCYYISSSSN-S 557
Query: 787 KIKSFIEKDVTDTAKKLVELVK----LTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLH 842
S+I +V D +L L+ L G+ S+ + + + +KK+ H + +
Sbjct: 558 SFSSYIFDNVVDLTNELKTLLNCISSLKGKTGLSTVCKILVKSKESSIIKKNYHN-IKEY 616
Query: 843 GAGKHLAKSEASRILRHLVIEDFLMEEVK--KSDVYGSVSSVLKVNQSKAHNLIIGRQNV 900
G G H + + S ++ + + F+ E + K Y SV K I ++
Sbjct: 617 GKGAHKSTNWWSSFMKVVRNDKFIKETLNCGKEMCYISVGVT-----DKGEEFIQSKEKY 671
Query: 901 VLRFPSAINSTKLSKS 916
++ P +N++ S +
Sbjct: 672 IIALPFFLNTSPKSSN 687
Score = 44 (20.5 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 572 GLVNCIIFRQSFNRPN 587
G NCII +++ NR N
Sbjct: 810 GNTNCIINKENINRDN 825
Score = 39 (18.8 bits), Expect = 7.1e-43, Sum P(3) = 7.1e-43
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 1086 NHNEPDSYECVDDLDFDEYEYVYEMNGSTTKPDQNN 1121
N N +++E + ++YEY+ NN
Sbjct: 820 NINRDNNFEKTHKNNIEKYEYIESYQKQKNNNKNNN 855
Score = 39 (18.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 48 DASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSN 99
D N++R+ + S GS + MNN + ++I + + C+ + L+N
Sbjct: 109 DQVDNLNRKR-ISSVFLGS--GQKMNNNKILNEIKHGIYKIVYCSPEYALNN 157
Score = 38 (18.4 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 272 LEGYRQAEE-RQKSHFSASTTRTYQYETPQPAVLKID 307
LE R E QK HF + +Q E K D
Sbjct: 32 LEELRMKMEITQKKHFGYKNLKDFQVEAVHATFHKKD 68
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 475 (172.3 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 118/339 (34%), Positives = 177/339 (52%)
Query: 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICP 433
D+ + L+A+ + FG FRP Q + I + G + PTG GKSL YQL AL P
Sbjct: 6 DYSHKECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLP 65
Query: 434 GITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493
+TLV+SPL++L++DQ+ L I A + ++ E Q ++ + K+L V+
Sbjct: 66 HLTLVVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDG--DIKVLMVSV 123
Query: 494 EKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVX 553
E+ K++ + +ES+ ++ +V+DEAHC+S+WGH+FRPDY L Q + V
Sbjct: 124 ERF-KNERFRQFIESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVL 178
Query: 554 XXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC--------EKVAERL---QVG 602
VK+D+ + + I + F R NL + K E++ Q G
Sbjct: 179 LLTATATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQQG 238
Query: 603 LSYGHFFLLKEFYVVSL---ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFG 659
+ L V+ + G A YH D R+ +Q+ + +I +I AT+AFG
Sbjct: 239 AGIVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFG 298
Query: 660 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 698
MGI+K ++RFVIH+ LPKSIE Y QE GRAGRDG S C
Sbjct: 299 MGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQC 337
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 475 (172.3 bits), Expect = 2.0e-42, P = 2.0e-42
Identities = 118/339 (34%), Positives = 177/339 (52%)
Query: 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICP 433
D+ + L+A+ + FG FRP Q + I + G + PTG GKSL YQL AL P
Sbjct: 6 DYSHKECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLP 65
Query: 434 GITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493
+TLV+SPL++L++DQ+ L I A + ++ E Q ++ + K+L V+
Sbjct: 66 HLTLVVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDG--DIKVLMVSV 123
Query: 494 EKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVX 553
E+ K++ + +ES+ ++ +V+DEAHC+S+WGH+FRPDY L Q + V
Sbjct: 124 ERF-KNERFRQFIESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVL 178
Query: 554 XXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDC--------EKVAERL---QVG 602
VK+D+ + + I + F R NL + K E++ Q G
Sbjct: 179 LLTATATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQQG 238
Query: 603 LSYGHFFLLKEFYVVSL---ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFG 659
+ L V+ + G A YH D R+ +Q+ + +I +I AT+AFG
Sbjct: 239 AGIVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFG 298
Query: 660 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 698
MGI+K ++RFVIH+ LPKSIE Y QE GRAGRDG S C
Sbjct: 299 MGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQC 337
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 468 (169.8 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 121/353 (34%), Positives = 185/353 (52%)
Query: 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447
V+G SFR Q + I + G +++PTG GKSL YQ+PA+I PGITLV+SPLVSL+
Sbjct: 264 VYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMI 323
Query: 448 DQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
DQ+ HL + I LS + E E LR+L K +L+V+PE++ + L
Sbjct: 324 DQLKHL-PSIIKGGLLSSSQRPEEATETLRKLKEGIIK--VLFVSPERLLNVEFLSMFRM 380
Query: 508 SLNARELLARIVIDEAHCVSQWGHDFRPDYQGL--GILKQKFPNTPVXXXXXXXXXSVKE 565
SL+ ++ +V+DEAHCVS+W H+FRP Y L +L + + +
Sbjct: 381 SLS----VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQ 436
Query: 566 DVVQALGLVNCIIFRQSFNRPNLWMDCE-KVAERLQVGLSYGHFFLLKEFYVVSLECGHK 624
V+ +L + + + ++S R N + A R++ L KE + + C +
Sbjct: 437 AVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ 496
Query: 625 ----------------AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR 668
A YH + R +Q+ + ++I ++ ATVAFGMG++K DV
Sbjct: 497 YETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVG 556
Query: 669 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQGVAE 720
VIH S+P S+E Y QE GRAGRDG+ S C L+Y +++++ + S GV E
Sbjct: 557 AVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDE 609
Score = 38 (18.4 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 954 YSSLRML-RTLLVKEAGEGVMAYHIFGNATLQH 985
Y LR L + V E G H+F T QH
Sbjct: 595 YLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQH 627
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 263 (97.6 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 66/196 (33%), Positives = 103/196 (52%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G+ +F P Q ++ +SG +++PTGGGKSL YQLPAL+ P +TLVISPL+SL
Sbjct: 484 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 543
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
+ DQ+ L + A + M ++ L++ S + ++L ++PE +A +
Sbjct: 544 MDDQVSGL-PPGLKAACIHSGMSKKQRNSALQKARS--AQVQVLMLSPEALAGAGAA--G 598
Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXXSVK 564
L L +A IDEAHC+SQW H+FRP Y + +L+++ + S
Sbjct: 599 LAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTA 658
Query: 565 EDVVQALGLVNCIIFR 580
DV Q LG+ + R
Sbjct: 659 LDVAQHLGVAEESVLR 674
Score = 186 (70.5 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + +R VQ+ + + + ++ ATVAFGMG+++PDVR V+H LP S E Y Q
Sbjct: 750 AEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 809
Query: 685 ECGRAGRDGQRSSCVLY 701
GRAGRDGQ + C L+
Sbjct: 810 AVGRAGRDGQPAHCHLF 826
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 263 (97.6 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 66/196 (33%), Positives = 103/196 (52%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G+ +F P Q ++ +SG +++PTGGGKSL YQLPAL+ P +TLVISPL+SL
Sbjct: 489 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 548
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
+ DQ+ L + A + M ++ L++ S + ++L ++PE +A +
Sbjct: 549 MDDQVSGL-PPGLKAACIHSGMSKKQRNSALQKARS--AQVQVLMLSPEALAGAGAA--G 603
Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXXSVK 564
L L +A IDEAHC+SQW H+FRP Y + +L+++ + S
Sbjct: 604 LAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTA 663
Query: 565 EDVVQALGLVNCIIFR 580
DV Q LG+ + R
Sbjct: 664 LDVAQHLGVAEESVLR 679
Score = 186 (70.5 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + +R VQ+ + + + ++ ATVAFGMG+++PDVR V+H LP S E Y Q
Sbjct: 755 AEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 814
Query: 685 ECGRAGRDGQRSSCVLY 701
GRAGRDGQ + C L+
Sbjct: 815 AVGRAGRDGQPAHCHLF 831
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 263 (97.6 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 66/196 (33%), Positives = 103/196 (52%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G+ +F P Q ++ +SG +++PTGGGKSL YQLPAL+ P +TLVISPL+SL
Sbjct: 507 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 566
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
+ DQ+ L + A + M ++ L++ S + ++L ++PE +A +
Sbjct: 567 MDDQVSGL-PPGLKAACIHSGMSKKQRNSALQKARS--AQVQVLMLSPEALAGAGAA--G 621
Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXXSVK 564
L L +A IDEAHC+SQW H+FRP Y + +L+++ + S
Sbjct: 622 LAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTA 681
Query: 565 EDVVQALGLVNCIIFR 580
DV Q LG+ + R
Sbjct: 682 LDVAQHLGVAEESVLR 697
Score = 186 (70.5 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + +R VQ+ + + + ++ ATVAFGMG+++PDVR V+H LP S E Y Q
Sbjct: 773 AEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 832
Query: 685 ECGRAGRDGQRSSCVLY 701
GRAGRDGQ + C L+
Sbjct: 833 AVGRAGRDGQPAHCHLF 849
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 255 (94.8 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 75/231 (32%), Positives = 115/231 (49%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G +FRP Q I +SG +++PTG GKSL YQLPAL+ P +TLV+SPL+SL
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
+ DQ+ L + A L M +++ +L+++ + + +L V+PE + R
Sbjct: 554 MDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRA--AQVHVLIVSPEALVGCGA--RG 608
Query: 506 LESL-NAREL--LARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXX 561
SL A +L +A IDE HC+SQW H+FRP Y + +L++
Sbjct: 609 PGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATR 668
Query: 562 SVKEDVVQALGLVNCIIFRQSFNRP---NLWMDCEKVAERLQVGLSYGHFF 609
S DV Q LG+ S N P +L + ++ +++ V L G F
Sbjct: 669 STARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRF 719
Score = 188 (71.2 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 621 CGHKAAF--YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 678
CG +A YH + +R VQ+ + + + ++ ATVAFGMG+++PDVR V+H LP S
Sbjct: 757 CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPS 816
Query: 679 IEGYHQECGRAGRDGQRSSCVLY 701
E Y Q GRAGRDG+ + C L+
Sbjct: 817 FESYVQAIGRAGRDGKPAHCHLF 839
Score = 51 (23.0 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 200 QDETCLPPELCSICNHGCKLGLCPETS--SHIQDMKDMLIAISNELLDNATNLSPAQTEK 257
Q+ +C P L + P+ S S +QD L A N L N T P Q+ K
Sbjct: 74 QEPSCWGPHLSRAATQNTQS--MPKQSLLSSVQDYGKRLKA--N--LKNTTQTGPTQSRK 127
Query: 258 LRQERLQLS 266
L+ ++ LS
Sbjct: 128 LQLQKRSLS 136
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 400 (145.9 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 104/294 (35%), Positives = 161/294 (54%)
Query: 386 KKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+ SF+P Q ++I++ + D V+M TG GKSL +Q P + GI LVISPL+S
Sbjct: 507 KTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVISPLIS 566
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQ++ L ++IPA FL + + ++ ++ KY+++Y+TPE + + LLR
Sbjct: 567 LMEDQVLQLEISSIPACFLGS----AQSKNVVEDIKLG--KYRIVYLTPEFCSGNLELLR 620
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVK 564
QLE+ L+A +DEAHC+S+WGHDFR ++ LG LK +FP P+ SV+
Sbjct: 621 QLEANIGITLIA---VDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTATAGSSVR 677
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL-LKEFYVVSLECGH 623
ED+V L L + I F+RPNL+ L+VG G LK+F V C
Sbjct: 678 EDIVCCLNLKDPQITCTGFDRPNLY---------LEVGRKTGDILQDLKQFLV----CKS 724
Query: 624 KAAF-YHGSID---PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
+A+ + G P+++ Q ++ + C T G+ IN +R +HH
Sbjct: 725 SSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACGTYHAGLSIN---LRKQVHH 775
Score = 259 (96.2 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
Identities = 77/257 (29%), Positives = 128/257 (49%)
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
E + L CG YH + R V ++ +DEI + ATVAFGMGINK D+R VIH
Sbjct: 750 ELKKLKLACGT----YHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKADIRQVIH 805
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+ PK +E Y+QE GRAGRDG +SSC + ++ +D + ++S+ E+ +
Sbjct: 806 YGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEIRNEKFRL---YKLKM 862
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+ + L ++ ++S+ E D R+ + G + +CK D+C ++
Sbjct: 863 MGKMEKYLYSSKCRRQIILSHFE-DKQLRKASVGI-MGTENCCDNCKSRLDHCFSLEDSE 920
Query: 793 E-KDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKS 851
+ +D A + + V + G +F + RGS +Q ++ R+ + S+ G GK +
Sbjct: 921 DTQDFGPQAFQFLSAVTILGGRFGIGIPILFLRGSNSQRLED-RYRSHSVFGTGKDRTEK 979
Query: 852 EASRILRHLVIEDFLME 868
+ R L+IE FL E
Sbjct: 980 WWKALSRQLIIEGFLAE 996
Score = 45 (20.9 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 231 DMKDMLIAISNELLDNATNLSPAQTEKLRQ-ERLQL 265
D+K L +IS E++D A L P KL +R+ L
Sbjct: 246 DVKKQLTSISKEMMDLAERL-PDTFGKLENPQRVSL 280
Score = 44 (20.5 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 980 NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETI 1019
N L ++K P T E + I+G+ + K LLE I
Sbjct: 1147 NKILLDMAKMRPTTVENVKRIDGVSEGKAVMLAP-LLEVI 1185
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 257 (95.5 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 66/193 (34%), Positives = 100/193 (51%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G+H+FRP Q + +SG +++PTG GKSL YQLPAL+ P +TLV+SPL+SL
Sbjct: 494 GHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSL 553
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV----AKSDV 501
+ DQ+ L + A L M +++ +L+++ + + +L V+PE + AK
Sbjct: 554 MDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRA--AQVHVLIVSPEALVGCGAKGPA 610
Query: 502 LLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXX 560
L L +A IDE HC+SQW H+FRP Y + +L++
Sbjct: 611 NLPPAAQLPP---VAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATAT 667
Query: 561 XSVKEDVVQALGL 573
S DV Q LG+
Sbjct: 668 RSTARDVAQHLGI 680
Score = 181 (68.8 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + +R VQ+ + + + ++ ATVAFGMG+++PDVR V+H LP S E Y Q
Sbjct: 763 AEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 822
Query: 685 ECGRAGRDGQRSSCVLY 701
GRAGRDG+ + C L+
Sbjct: 823 AIGRAGRDGKPAHCHLF 839
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 234 (87.4 bits), Expect = 9.1e-31, Sum P(4) = 9.1e-31
Identities = 68/194 (35%), Positives = 94/194 (48%)
Query: 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICP----GITLVISPLV 443
+FG+ +FR Q I T+SG V + TG GKSL YQLPA + ITLVISPLV
Sbjct: 865 MFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLV 924
Query: 444 SLIQDQIM---HLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSD 500
SL++DQ+ H L+A+ T + QQ I N + +L V+PE V +
Sbjct: 925 SLMEDQVTGVPHFLRAHCLHTNQTAPQRMKIQQMIA---NGEI---DILLVSPEAVVAGE 978
Query: 501 VLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXX 559
L +A IDEAHCVSQW H+FRP Y + +L++ V
Sbjct: 979 RATGFGAILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTVLGLTATA 1038
Query: 560 XXSVKEDVVQALGL 573
+ ++ LG+
Sbjct: 1039 TLPTRVSIINHLGI 1052
Score = 217 (81.4 bits), Expect = 9.1e-31, Sum P(4) = 9.1e-31
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YH + ++R VQK + +E+ I+ AT+AFGMGINKPD+R VIH+++P++ E Y QE G
Sbjct: 1143 YHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIG 1202
Query: 688 RAGRDGQRSSCVLY 701
RAGRDG S C L+
Sbjct: 1203 RAGRDGLPSHCHLF 1216
Score = 53 (23.7 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 745 ENLLRMVSYCENDVDCRRLLQLVHFGEKFDSA-----HCKKTCDNCSKIKSFIEKDVTD 798
+NL+ VS EN D LLQL++ E+F+ +C + D C +I FI V D
Sbjct: 1067 DNLVLSVSKDENR-DAA-LLQLLN-SERFEPCQSIIIYCTRR-DECERIAGFIRTCVQD 1121
Score = 48 (22.0 bits), Expect = 9.1e-31, Sum P(4) = 9.1e-31
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 726 PGHN-RFNVANSGRVLETNTENLLRMVSYCEND 757
PGH F+V + +L+ EN+ ++ Y E D
Sbjct: 1279 PGHEIGFSVEKTVEMLDIPAENISTLLCYMELD 1311
Score = 39 (18.8 bits), Expect = 9.1e-31, Sum P(4) = 9.1e-31
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 223 PETSSHIQDMKDMLIAISNELLDNATNLSPAQTEK 257
P+ + IQ+++ + + N+ D+ + PA ++K
Sbjct: 348 PDQMAIIQELQTDMNSSMNQKPDHLNHTPPASSQK 382
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 242 (90.2 bits), Expect = 7.0e-30, Sum P(2) = 7.0e-30
Identities = 60/154 (38%), Positives = 88/154 (57%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G+H+F P Q ++ +SG +++PTG GKSL YQLPAL+ P +TLVISPL SL
Sbjct: 491 GHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFRRSPCLTLVISPLTSL 550
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV--AKSDVLL 503
+ DQ+ L A SG M ++ L++ + + ++L ++PE + A + LL
Sbjct: 551 MDDQLSGLPPGLKGACIHSG-MTKKQRDSALQKARA--ARVQVLMLSPEALVGAGASTLL 607
Query: 504 RQLESLNARELLARIVIDEAHCVSQWGHDFRPDY 537
QL + A +DEAHC+SQW H+FRP Y
Sbjct: 608 SQLPPV------AFACLDEAHCLSQWSHNFRPCY 635
Score = 185 (70.2 bits), Expect = 7.0e-30, Sum P(2) = 7.0e-30
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + +R VQ+ + + + ++ ATVAFGMG+++PDVR V+H LP S E Y Q
Sbjct: 755 AEAYHAGLCSRERRRVQRAFMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQ 814
Query: 685 ECGRAGRDGQRSSCVLY 701
GRAGRDGQ + C L+
Sbjct: 815 AVGRAGRDGQPAHCHLF 831
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 632 IDPAQRAFVQKQWSKD 647
+ P +RA +Q QW +
Sbjct: 1011 LGPVRRALLQLQWDPE 1026
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 237 (88.5 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSL 445
G+ +FRP Q + +SG +++PTG GKSL YQLPAL+ P +TLV+SPL+SL
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVL--L 503
+ DQ+ L + A + M +++ +L+++ + + +L +TPE + + L
Sbjct: 537 MDDQVSGLPPC-LKAACIHSGMTRKQRESVLQKIRA--AQVHVLMLTPEALVGAGGLPPA 593
Query: 504 RQLESLNARELLARIVIDEAHCVSQWGHDFRPDY 537
QL + A IDEAHC+SQW H+FRP Y
Sbjct: 594 AQLPPV------AFACIDEAHCLSQWSHNFRPCY 621
Score = 190 (71.9 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + +R VQ+ + + ++ ++ ATVAFGMG+++PDVR V+H LP S E Y Q
Sbjct: 741 AEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 800
Query: 685 ECGRAGRDGQRSSCVLY 701
GRAGRDGQ + C L+
Sbjct: 801 AVGRAGRDGQPAHCHLF 817
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 232 (86.7 bits), Expect = 8.0e-30, Sum P(2) = 8.0e-30
Identities = 64/196 (32%), Positives = 97/196 (49%)
Query: 384 NNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPG----ITLVI 439
+N G SFR Q + + +SG V++ TG GKSL YQLPA + I+LVI
Sbjct: 720 DNLSELGYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQLPAYMYAKRSRCISLVI 779
Query: 440 SPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499
SPLVSL+ DQ+ L + A + NM T+++ + ++ K +L ++PE +
Sbjct: 780 SPLVSLMDDQVSGL-PPKLKAVCIHSNMTRTQREAAIEKVKQG--KVHVLLLSPEALVGG 836
Query: 500 DVLLRQ-LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXX 557
L + +A IDEAHCVS+W H+FRP Y L +L+++ +
Sbjct: 837 GFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTA 896
Query: 558 XXXXSVKEDVVQALGL 573
+ EDV LG+
Sbjct: 897 TATRATAEDVAHHLGV 912
Score = 197 (74.4 bits), Expect = 8.0e-30, Sum P(2) = 8.0e-30
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + A+R VQ + ++ ++ ATVAFGMG++K DVR +IH+++PK+ E Y Q
Sbjct: 1020 AESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQ 1079
Query: 685 ECGRAGRDGQRSSCVLY 701
E GRAGRDG+ + C L+
Sbjct: 1080 EIGRAGRDGKDAQCHLF 1096
Score = 43 (20.2 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 452 HLLQANIPATFLSGNMEWTEQQEI 475
H LQA + S N EW ++ E+
Sbjct: 214 HQLQAMVGQRMASLNQEWLQRCEL 237
Score = 38 (18.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 205 LPPELCSICNH 215
LPP+L ++C H
Sbjct: 793 LPPKLKAVCIH 803
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 228 (85.3 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 63/196 (32%), Positives = 96/196 (48%)
Query: 384 NNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPG----ITLVI 439
+N G SFR Q + + +SG ++ TG GKSL YQLPA + I+LVI
Sbjct: 717 DNLSELGYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQLPAYMYAKRSRCISLVI 776
Query: 440 SPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499
SPLVSL+ DQ+ L + A + NM T+++ + ++ K +L ++PE +
Sbjct: 777 SPLVSLMDDQVSGL-SPKLKAVCIHSNMTRTQREAAIEKVKQG--KVHVLLLSPEALVGG 833
Query: 500 DVLLRQ-LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXX 557
L + +A IDEAHCVS+W H+FRP Y L +L+++ +
Sbjct: 834 GFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTA 893
Query: 558 XXXXSVKEDVVQALGL 573
+ EDV LG+
Sbjct: 894 TATRATAEDVAHHLGV 909
Score = 197 (74.4 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A YH + A+R VQ + ++ ++ ATVAFGMG++K DVR +IH+++PK+ E Y Q
Sbjct: 1017 AESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQ 1076
Query: 685 ECGRAGRDGQRSSCVLY 701
E GRAGRDG+ + C L+
Sbjct: 1077 EIGRAGRDGKDAQCHLF 1093
Score = 43 (20.2 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 452 HLLQANIPATFLSGNMEWTEQQEI 475
H LQA + S N EW ++ E+
Sbjct: 214 HQLQAMVGQRMASLNQEWLQRCEL 237
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 330 (121.2 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 68/143 (47%), Positives = 94/143 (65%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TM+G +VF++MPTGGGKSL
Sbjct: 63 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLE 507
+ KL+YVTPEK+AKS + + +LE
Sbjct: 183 ELKLIYVTPEKIAKSKMFMSRLE 205
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 319 (117.4 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 66/135 (48%), Positives = 89/135 (65%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TM+G +VF++MPTGGGKSL
Sbjct: 63 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKS 499
+ KL+YVTPEK+AKS
Sbjct: 183 ELKLIYVTPEKIAKS 197
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 196 (74.1 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 38/97 (39%), Positives = 65/97 (67%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 682
++ A ++G D R + +QW KD+++II AT AFG+G++K +V+ VIH +P +I+ Y
Sbjct: 406 NRIALFNGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRY 465
Query: 683 HQECGRAGRDGQRSSC-VLYYSYSDFIRVKHMISQGV 718
+QE GRAGRDG+ ++ V+YY+ + K + S+ +
Sbjct: 466 YQEIGRAGRDGEAATSEVIYYN-KQLAKAKKINSERI 501
Score = 153 (58.9 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 46/142 (32%), Positives = 72/142 (50%)
Query: 411 VFVLMPTGGGKSLTYQLPALICPG--ITLVISPLVSLIQDQ---IMHLLQA----NIPAT 461
+F+ +PTG GK+L L +T+VI P V L +Q LL+ ++
Sbjct: 167 LFINLPTGCGKTLVAHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELLEKADSDSVQNY 226
Query: 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVID 521
G + E+ EI +++D K K+++ +PE V S LL L L + +A I+ID
Sbjct: 227 AWHGQLSDGEKSEIRDNIDND--KQKVIFTSPESVTGS--LLPLLFRLAKQNSIANIIID 282
Query: 522 EAHCVSQWGHDFRPDYQGLGIL 543
EAH + WG +FR ++Q G L
Sbjct: 283 EAHLIDTWGSNFRSEFQRFGAL 304
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 196 (74.1 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 38/97 (39%), Positives = 65/97 (67%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 682
++ A ++G D R + +QW KD+++II AT AFG+G++K +V+ VIH +P +I+ Y
Sbjct: 406 NRIALFNGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRY 465
Query: 683 HQECGRAGRDGQRSSC-VLYYSYSDFIRVKHMISQGV 718
+QE GRAGRDG+ ++ V+YY+ + K + S+ +
Sbjct: 466 YQEIGRAGRDGEAATSEVIYYN-KQLAKAKKINSERI 501
Score = 153 (58.9 bits), Expect = 5.0e-22, Sum P(2) = 5.0e-22
Identities = 46/142 (32%), Positives = 72/142 (50%)
Query: 411 VFVLMPTGGGKSLTYQLPALICPG--ITLVISPLVSLIQDQ---IMHLLQA----NIPAT 461
+F+ +PTG GK+L L +T+VI P V L +Q LL+ ++
Sbjct: 167 LFINLPTGCGKTLVAHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELLEKADSDSVQNY 226
Query: 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVID 521
G + E+ EI +++D K K+++ +PE V S LL L L + +A I+ID
Sbjct: 227 AWHGQLSDGEKSEIRDNIDND--KQKVIFTSPESVTGS--LLPLLFRLAKQNSIANIIID 282
Query: 522 EAHCVSQWGHDFRPDYQGLGIL 543
EAH + WG +FR ++Q G L
Sbjct: 283 EAHLIDTWGSNFRSEFQRFGAL 304
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 200 (75.5 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 36/77 (46%), Positives = 54/77 (70%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
AA YH + A+R VQ + + + ++ ATVAFGMG++K DVR V+H+++P++ E Y Q
Sbjct: 172 AAAYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQ 231
Query: 685 ECGRAGRDGQRSSCVLY 701
E GRAGRDG+ + C L+
Sbjct: 232 EIGRAGRDGEPAWCHLF 248
Score = 90 (36.7 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 520 IDEAHCVSQWGHDFRPDY 537
IDEAHC+S+W H+FRP Y
Sbjct: 4 IDEAHCISEWSHNFRPSY 21
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 248 (92.4 bits), Expect = 8.6e-20, P = 8.6e-20
Identities = 61/158 (38%), Positives = 89/158 (56%)
Query: 463 LSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDE 522
L+ + E++E+L +L + + K+LY+TPE A S L SL +R LL+ +V+DE
Sbjct: 4 LNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS-FQPTLNSLVSRHLLSYLVVDE 62
Query: 523 AHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSVKEDVVQALGLVNCI-IFRQ 581
AHCVSQWGHDFRPDY LG L+ + + P V+EDV AL L + IF+
Sbjct: 63 AHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKT 122
Query: 582 SFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSL 619
R NL+ D + + L + YG+ LK+F + +L
Sbjct: 123 PCFRANLFYDVQ--FKEL-ISDPYGN---LKDFCLKAL 154
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 264 (98.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 77/264 (29%), Positives = 130/264 (49%)
Query: 338 DRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPN 397
+RL + PV + P P + Y G + Q + P + +A + G+ +FRP
Sbjct: 444 ERLVTTERPVLQAPCPPPTVPPLYPPGPSGQVAET---P-AEVFQALEQ--LGHRAFRPR 497
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHL 453
Q +++ +SG +++PTG GKSL YQLPAL+ P +TLVISPL+SL+ DQ+ L
Sbjct: 498 QEQVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSLMDDQVSSL 557
Query: 454 LQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDV-LLRQLESLNAR 512
+ + M +++ L+++++ + +LL ++PE + + + L L
Sbjct: 558 PPC-LKGVCIHSGMSQKQRESALQKVHA--AQVQLLVLSPETLVGAGAGMPGHLPQLPP- 613
Query: 513 ELLARIVIDEAHCVSQWGHDFRPDYQGL-GILKQKFPNTPVXXXXXXXXXSVKEDVVQAL 571
+A IDEAHC+SQW H+FRP Y + +L++ S DV + L
Sbjct: 614 --VAFACIDEAHCISQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVARHL 671
Query: 572 GLVNCIIFRQSFNRP-NLWMDCEK 594
G+ ++ R P NL + +
Sbjct: 672 GVAEELVLRGPATVPSNLHLSVSR 695
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 157 (60.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 617 VSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 676
+S E G +A YH ++ + V +++ + II AT A GMGI+ PD+R VIH P
Sbjct: 1152 ISCELGCEA--YHSAV--LDQTGVMQRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRP 1207
Query: 677 KSIEGYHQECGRAGRDGQRSSCVLYY 702
+++ Y QE GRAGRDG S V+ +
Sbjct: 1208 RTLLDYSQESGRAGRDGLASKAVIVH 1233
Score = 128 (50.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 46/148 (31%), Positives = 63/148 (42%)
Query: 398 QREIINATMSGHD-VFVLMPTGGGKSLTYQLPALICPG-ITLVISPLVSLIQDQIMHLLQ 455
Q + A G V +MPTG GKS+ + LPA PG T+++ PL+SL D +M
Sbjct: 920 QAPALKAIQDGASPVVAIMPTGSGKSMLFMLPAYAAPGGCTIMVVPLLSLRADLMMRCQA 979
Query: 456 ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515
I + W ++ D + ++ VTPE D L L
Sbjct: 980 LGISC------VSWESRRP------PD--EAAIVLVTPESTENPD-FHTFLNRQRQMRRL 1024
Query: 516 ARIVIDEAHCVSQWGHDFRPDYQGLGIL 543
RIVIDE H + DF+P LG L
Sbjct: 1025 DRIVIDECHVILNDQKDFQPAMARLGRL 1052
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 147 (56.8 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
Identities = 44/125 (35%), Positives = 70/125 (56%)
Query: 410 DVFVLMPTGGGKSLTYQLPALI-----CPG-----ITLVISPLVSLIQDQIMHLLQANIP 459
++ ++PTGGGKSL++ +PALI PG +TLV+ P++SL QD ++ + + +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVNEKGL- 1266
Query: 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519
SGN WT +++ L + L++ + A ++ LR ESL LAR+V
Sbjct: 1267 -LVCSGN--WTAFKDVRLTLETQLPD---LFILTYESALTNSGLRFFESLATLGRLARVV 1320
Query: 520 IDEAH 524
IDEAH
Sbjct: 1321 IDEAH 1325
Score = 143 (55.4 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 628 YHGSIDPAQRA--FVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 685
Y G + +R F + + + I+ AT AFG+GIN VR V+H+ LP S Y QE
Sbjct: 1449 YTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQE 1508
Query: 686 CGRAGRDGQRSSCVLYYSYSD 706
GRAGRDG+ + L+Y D
Sbjct: 1509 TGRAGRDGKYAIAALFYEKYD 1529
Score = 42 (19.8 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 31 RNYIRPGLSTPVEHSD--NDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFN 84
R ++ VE + +++S N+S A+ S+ D + ++ N+R + N N
Sbjct: 492 RRHLEAMCGATVERKEGGSNSSSNISNVANFDSAEDDND-NDNDNDRDSNNNNNNN 546
Score = 40 (19.1 bits), Expect = 3.6e-13, Sum P(4) = 3.6e-13
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 746 NLLRMVSYCENDVDCRRLLQLVHF-GEKFDSAHCKKTCDNCSKIKSFI 792
NL+ +V Y N+V RR + G+ D A C + + +F+
Sbjct: 1858 NLISLVYYAWNNVQYRRTIADKFLQGDVRDQAFYGFVCCSTTTNSAFV 1905
>UNIPROTKB|F5H2L2 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026 EMBL:AC006559
HGNC:HGNC:9948 ChiTaRS:RECQL IPI:IPI01012611
ProteinModelPortal:F5H2L2 SMR:F5H2L2 Ensembl:ENST00000542432
ArrayExpress:F5H2L2 Bgee:F5H2L2 Uniprot:F5H2L2
Length = 131
Score = 185 (70.2 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 36/66 (54%), Positives = 46/66 (69%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TM+G +VF++MPTGGGKSL
Sbjct: 63 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPAL 430
YQLPAL
Sbjct: 123 YQLPAL 128
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 147 (56.8 bits), Expect = 5.2e-13, Sum P(4) = 5.2e-13
Identities = 44/125 (35%), Positives = 70/125 (56%)
Query: 410 DVFVLMPTGGGKSLTYQLPALI-----CPG-----ITLVISPLVSLIQDQIMHLLQANIP 459
++ ++PTGGGKSL++ +PALI PG +TLV+ P++SL QD ++ + + +
Sbjct: 1389 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVNEKGL- 1447
Query: 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519
SGN WT +++ L + L++ + A ++ LR ESL LAR+V
Sbjct: 1448 -LVCSGN--WTAFKDVRLTLETQLPD---LFILTYESALTNSGLRFFESLATLGRLARVV 1501
Query: 520 IDEAH 524
IDEAH
Sbjct: 1502 IDEAH 1506
Score = 143 (55.4 bits), Expect = 5.2e-13, Sum P(4) = 5.2e-13
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 628 YHGSIDPAQRA--FVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 685
Y G + +R F + + + I+ AT AFG+GIN VR V+H+ LP S Y QE
Sbjct: 1630 YTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQE 1689
Query: 686 CGRAGRDGQRSSCVLYYSYSD 706
GRAGRDG+ + L+Y D
Sbjct: 1690 TGRAGRDGKYAIAALFYEKYD 1710
Score = 42 (19.8 bits), Expect = 5.2e-13, Sum P(4) = 5.2e-13
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 31 RNYIRPGLSTPVEHSD--NDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFN 84
R ++ VE + +++S N+S A+ S+ D + ++ N+R + N N
Sbjct: 673 RRHLEAMCGATVERKEGGSNSSSNISNVANFDSAEDDND-NDNDNDRDSNNNNNNN 727
Score = 40 (19.1 bits), Expect = 5.2e-13, Sum P(4) = 5.2e-13
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 746 NLLRMVSYCENDVDCRRLLQLVHF-GEKFDSAHCKKTCDNCSKIKSFI 792
NL+ +V Y N+V RR + G+ D A C + + +F+
Sbjct: 2039 NLISLVYYAWNNVQYRRTIADKFLQGDVRDQAFYGFVCCSTTTNSAFV 2086
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 173 (66.0 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 658 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQG 717
FGMG++K +VRFV H ++ KS+ GY+QE GRAGRDG+ S C LYYS +D +V +I +
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 61
Query: 718 VAE 720
VA+
Sbjct: 62 VAK 64
>UNIPROTKB|D4A4N2 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] InterPro:IPR018982
Pfam:PF09382 RGD:1311071 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0043140 IPI:IPI00394214
Ensembl:ENSRNOT00000031754 ArrayExpress:D4A4N2 Uniprot:D4A4N2
Length = 214
Score = 162 (62.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 42/148 (28%), Positives = 76/148 (51%)
Query: 739 VLET-NTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVT 797
V+E + L MVSYC+N CRR L HF E +++ C K CDNC K SF +K++T
Sbjct: 3 VMENVGQQKLYEMVSYCQNISKCRRALIAQHFDEVWNADACNKMCDNCCKDDSFEKKNIT 62
Query: 798 DTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRIL 857
+ + L++++K L++ + + K R +++ L + + +I+
Sbjct: 63 EHCQALIKILKQAEGLNEKLTPLKLIDAWMGKGAAKFRVAGVAVPA----LPREDLEKII 118
Query: 858 RHLVIEDFLMEEVKKSDVYGSVSSVLKV 885
H +++ +L E+ + Y ++S LKV
Sbjct: 119 VHALLQQYLKEDYSFT-AYATIS-YLKV 144
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 112 (44.5 bits), Expect = 5.6e-08, Sum P(5) = 5.6e-08
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN-KPDVRFVIHHSLPKSIEG 681
+K HG + +R V + +I+I+ AT G GI+ ++RFVI++ P S+E
Sbjct: 607 YKCGAIHGDMKQFERDSVIDNFKSGKISILVATDILGRGIHIGGNLRFVINYDFPSSLEQ 666
Query: 682 YHQECGRAGRDGQRSSCVLYYS 703
Y GR GR G + + ++
Sbjct: 667 YVHRVGRTGRQGNKGHALTLFT 688
Score = 69 (29.3 bits), Expect = 5.6e-08, Sum P(5) = 5.6e-08
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q + +SG D+ + TG GK+L Y LPA+
Sbjct: 314 PVQSQCWPGILSGQDILSIAQTGSGKTLGYLLPAI 348
Score = 60 (26.2 bits), Expect = 5.6e-08, Sum P(5) = 5.6e-08
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 246 NATNLSPAQTEKLRQE-RLQLSKQIQLLE 273
N T LS + E+++QE RLQ +K+IQ E
Sbjct: 210 NQTKLSKKEKERIKQEKRLQEAKEIQFKE 238
Score = 59 (25.8 bits), Expect = 5.6e-08, Sum P(5) = 5.6e-08
Identities = 25/103 (24%), Positives = 48/103 (46%)
Query: 457 NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516
NI + + G ++ EQ++IL + +++ ++ TP ++ D++ R E + +
Sbjct: 414 NIHSIAIYGGVDANEQKDILGQEHNE-----IIIATPGRLV--DLIQRSKEVVGLLGGVG 466
Query: 517 RIVIDEAHCVSQWG---------HDFRPDYQGLGILKQKFPNT 550
+++DEA + Q G RPD Q L + FP T
Sbjct: 467 MLILDEADRMLQLGFGDQLQKISEQIRPDRQTL-MFSATFPQT 508
Score = 43 (20.2 bits), Expect = 5.6e-08, Sum P(5) = 5.6e-08
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 23 LSSLQIS--RRNYIRPGLSTPVEHSD-NDASHNVSRRASLQSSSDGSKFSEPMNNRQKGS 79
LS QIS +R + +S D ND ++N +++ + ++ D + NN + +
Sbjct: 153 LSDDQISQFKRQLKKDNISKEYHLKDQNDNNNNKNKKKNKNNNDDEDDDEDDENNNKNQT 212
Query: 80 QIN 82
+++
Sbjct: 213 KLS 215
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 121 (47.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 678
L+ G AF G ++ +R +++K E+N++ AT GI+ D+ VI+ +P+S
Sbjct: 266 LQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRS 325
Query: 679 IEGYHQECGRAGRDGQRSSCV 699
+ Y GR GR G + + +
Sbjct: 326 ADTYIHRIGRTGRAGAKGTAI 346
Score = 69 (29.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 39/151 (25%), Positives = 66/151 (43%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CP------GIT 436
K G+ S Q+E + + D+ PTG GK+ ++ LPAL P
Sbjct: 17 KAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARV 76
Query: 437 LVISP---LVSLIQDQIMHLL-QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492
L+++P L S I HL + ++G + + Q+E L+ N D +L T
Sbjct: 77 LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG-NID-----ILVAT 130
Query: 493 PEKVAKSDVLLRQLESLNARELLARIVIDEA 523
P ++ + L + S + ++L +IDEA
Sbjct: 131 PGRLM--EYLDKGKFSAESVDIL---IIDEA 156
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 121 (47.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 678
L+ G AF G ++ +R +++K E+N++ AT GI+ D+ VI+ +P+S
Sbjct: 266 LQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRS 325
Query: 679 IEGYHQECGRAGRDGQRSSCV 699
+ Y GR GR G + + +
Sbjct: 326 ADTYIHRIGRTGRAGAKGTAI 346
Score = 69 (29.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 39/151 (25%), Positives = 66/151 (43%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CP------GIT 436
K G+ S Q+E + + D+ PTG GK+ ++ LPAL P
Sbjct: 17 KAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARV 76
Query: 437 LVISP---LVSLIQDQIMHLL-QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492
L+++P L S I HL + ++G + + Q+E L+ N D +L T
Sbjct: 77 LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG-NID-----ILVAT 130
Query: 493 PEKVAKSDVLLRQLESLNARELLARIVIDEA 523
P ++ + L + S + ++L +IDEA
Sbjct: 131 PGRLM--EYLDKGKFSAESVDIL---IIDEA 156
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 133 (51.9 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 34/102 (33%), Positives = 49/102 (48%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 683
K HG I +QR + NI+ AT G++ P+V +IH+ LP + E +
Sbjct: 374 KCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFV 433
Query: 684 QECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFT 725
GR GR G++ S +L YS D R +I + V S FT
Sbjct: 434 HRTGRTGRAGKKGSAILIYS-QDQSRAVKIIEREVG--SRFT 472
Score = 60 (26.2 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q+ ++ M G D+ TG GK+L + +P +
Sbjct: 129 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 116 (45.9 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KAA HG++ AQR + + K E++ + AT G++ V+ VI+++ P+ I+
Sbjct: 436 GLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDS 495
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR R G+ V + + SD
Sbjct: 496 YVHRVGRTARAGREGYAVTFVTDSD 520
Score = 76 (31.8 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 37/148 (25%), Positives = 64/148 (43%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL---------ICPGITLVISPLVSL- 445
P Q I ++G D+ TG GK+ + LP L + L+++P L
Sbjct: 192 PIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELA 251
Query: 446 --IQDQIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVL 502
I I +L Q +I + G + EQ+ +LR + ++ TP ++
Sbjct: 252 VQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPD------IVVATPGRMIDH--- 302
Query: 503 LRQLESLNARELLARIVIDEAHCVSQWG 530
LR S++ +L A +++DEA + Q G
Sbjct: 303 LRNSMSVDLDDL-AVLILDEADRLLQTG 329
Score = 48 (22.0 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 143 DESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSISRLPSITPNA 192
+E E A+ + D+ E + D E+ TPKP S + ++ +A
Sbjct: 117 EEEEEEDASDAETDKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGVSFHA 166
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 138 EAGQIDESAEVLANKIDDDE 157
EAG+ DE E + DDDE
Sbjct: 38 EAGE-DEDGEEEYEEEDDDE 56
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 125 (49.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG +D AQR + K++ ++ AT GI+ V VI++ LP + E Y GR
Sbjct: 293 HGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGR 352
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
GR G++ + + + D +R+ I Q + Q
Sbjct: 353 GGRFGRKGVAINFVTADD-VRMMREIEQFYSTQ 384
Score = 61 (26.5 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 362 IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPN--QREIINATMSGHDVFVLMPTGG 419
IE + D+ S+D K E + ++ RP+ Q+ I + GHDV +G
Sbjct: 14 IESNYDETVDSFD-EMNLKSELL-RGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGT 71
Query: 420 GKSLTYQLPAL--ICPGI----TLVISPLVSLIQDQIMHLLQA 456
GK+ T+ + L I + L+++P L Q QI ++ A
Sbjct: 72 GKTATFSISVLQKIDTNVKQCQALILAPTRELAQ-QIQKVVVA 113
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 127 (49.8 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ A HG +R V K + + NI+ AT G++ D+++VI++ P S E
Sbjct: 515 GYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSEN 574
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANS 736
Y GR GR Q + +++ + + + +IS V E++ TP ++A S
Sbjct: 575 YVHRIGRTGRCQQLGTAYTFFTPDNAKQARELIS--VLEEAGQTPSQALLDLARS 627
Score = 69 (29.3 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
+SG D+ + TG GK+L Y LPA++
Sbjct: 272 LSGRDLVGIAQTGSGKTLAYMLPAIV 297
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 115 (45.5 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 612 KEFYVVSLECGH-KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 670
KE Y L+C + +A H + P +R Q+ E ++ AT G++ + V
Sbjct: 394 KELYD-ELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCV 452
Query: 671 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD--FIR--VKHMISQG 717
I++ P S Y GR+GR G+ + +Y+ D F+R M+S G
Sbjct: 453 INYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSG 503
Score = 75 (31.5 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P QR+ I +SG + F PTG GK+ + P LI
Sbjct: 166 PIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLI 201
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 111 (44.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ A HG I A+R V K + + +I + AT G++ V V ++ +P+ +E
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G + + + D
Sbjct: 328 YIHRIGRTGRAGGSGLAITFVAAKD 352
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 381 LEANNKKVFGNHSFRPN--------QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL-- 430
LE + F NH+ R N Q + I +SG D+ TG GK+L + LP L
Sbjct: 8 LELGISETF-NHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK 66
Query: 431 ICPGIT----LVISPLVSL---IQDQIMHLL--QANIPATFLSGNMEWTEQQEILRELNS 481
I P + L+++P L I +I +L + +I + G + +Q LR+L
Sbjct: 67 IDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ---LRKLKG 123
Query: 482 DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530
+ ++ TP ++ D + R+ L+ L+ IV+DEA + +G
Sbjct: 124 NT---HIVVATPGRLL--DHIRRETIDLSN---LSTIVLDEADQMLYFG 164
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 111 (44.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ A HG I A+R V K + + +I + AT G++ V V ++ +P+ +E
Sbjct: 268 GYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVES 327
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G + + + D
Sbjct: 328 YIHRIGRTGRAGGSGLAITFVAAKD 352
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 46/169 (27%), Positives = 77/169 (45%)
Query: 381 LEANNKKVFGNHSFRPN--------QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL-- 430
LE + F NH+ R N Q + I +SG D+ TG GK+L + LP L
Sbjct: 8 LELGISETF-NHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK 66
Query: 431 ICPGIT----LVISPLVSL---IQDQIMHLL--QANIPATFLSGNMEWTEQQEILRELNS 481
I P + L+++P L I +I +L + +I + G + +Q LR+L
Sbjct: 67 IDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ---LRKLKG 123
Query: 482 DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530
+ ++ TP ++ D + R+ L+ L+ IV+DEA + +G
Sbjct: 124 NT---HIVVATPGRLL--DHIRRETIDLSN---LSTIVLDEADQMLYFG 164
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 99 (39.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 683
KAA H +R + + ++ I+ AT GI+ D+ VIH LP +++ Y
Sbjct: 260 KAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYI 319
Query: 684 QECGRAGRDGQRSSCV 699
GR GR G+ + V
Sbjct: 320 HRSGRTGRMGKEGTVV 335
Score = 86 (35.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/131 (28%), Positives = 62/131 (47%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--ICPGI----TLVISPLVSLIQDQIM 451
Q++ I + G DV PTG GK+L Y LP L I P + +V++P L+ QI
Sbjct: 25 QKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVM-QIH 83
Query: 452 HLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA 511
+Q T +SG +I R++ +++ +P ++ + L+R ++ L
Sbjct: 84 EEVQKFTAGTEISG-ASLIGGADIKRQVEKLKKHPRVIVGSPGRILE---LIR-MKKLKM 138
Query: 512 RELLARIVIDE 522
E+ IV DE
Sbjct: 139 HEVKT-IVFDE 148
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 129 (50.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 682
+K HG I AQR + +I+ AT G++ P+V VIH+ LP + E +
Sbjct: 385 YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETF 444
Query: 683 HQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
GR GR G++ S +L + D R MI + V +
Sbjct: 445 VHRTGRTGRAGKKGSAILIHG-QDQTRAVKMIEKEVGSR 482
Score = 60 (26.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q+ ++ M G D+ TG GK+L + +P +
Sbjct: 141 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 108 (43.1 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 614 FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
F +V G AA + P QR V KQ+ + +I ++ +T A GI+ V+ VI++
Sbjct: 486 FLLVQAFGGVAAAEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQLVINY 545
Query: 674 SLPKSIEGYHQECGR---AGRDGQRSSCVLYYSYSDFIRV 710
P+ + Y GR AGR GQ + +L F+++
Sbjct: 546 DAPQYLRTYVHRVGRTARAGRTGQAFTLLLKVQERRFLQM 585
Score = 79 (32.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 32/127 (25%), Positives = 57/127 (44%)
Query: 410 DVFVLMPTGGGKSLTYQLP---ALICPGI----TLVISPLVSLIQD--QIMHLLQANIP- 459
D+ V PTG GK+L + +P AL+C + LV+ P L Q ++ ++ P
Sbjct: 215 DLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKELAQQVSKVFNIYTDATPL 274
Query: 460 -ATFLSGNMEWTEQQEILRELNSD--YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516
++G ++QE L + D C ++ TP ++ + Q + + L
Sbjct: 275 RVALITGQKSLVKEQESLVQKTVDGFRCLADVVVATPGRLVDH---IDQTPGFSLQHLRF 331
Query: 517 RIVIDEA 523
++IDEA
Sbjct: 332 -LIIDEA 337
Score = 47 (21.6 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 964 LVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEI 1000
++ EAG MA H + LQ L VPR EE L ++
Sbjct: 585 MLAEAGVPKMARHDIHSELLQPL---VPRYEEALSQL 618
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 111 (44.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ A HG + +R K + + ++ AT G++ PDV VI+ +P++ E
Sbjct: 263 GYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPES 322
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G+ + +Y +
Sbjct: 323 YIHRIGRTGRAGREGKAITLINYRE 347
Score = 73 (30.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q+E I + GH++ PTG GK+ Y LP L
Sbjct: 27 PIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 111 (44.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ A HG + +R K + + ++ AT G++ PDV VI+ +P++ E
Sbjct: 263 GYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPES 322
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G+ + +Y +
Sbjct: 323 YIHRIGRTGRAGREGKAITLINYRE 347
Score = 73 (30.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q+E I + GH++ PTG GK+ Y LP L
Sbjct: 27 PIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 135 (52.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/123 (24%), Positives = 59/123 (47%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + D ++ AT G++ P+V V+ PK +E Y GR
Sbjct: 348 HGDIPQKQREITLKGFRNDNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 407
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + + ++ ++Q EQ R V ++ +++ ++++ +
Sbjct: 408 TGRAGRTGVCICFYQHKE----EYQLAQ--VEQKAGIK-FKRIGVPSATEIIKASSKDAI 460
Query: 749 RMV 751
R++
Sbjct: 461 RLL 463
Score = 53 (23.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 367 DQKWSSW-DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY 425
+QK ++ +FP +++ K G + P Q + + SG D+ TG GK+ ++
Sbjct: 62 EQKEGAFSNFPISEET-VKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSF 120
Query: 426 QLPAL 430
+P +
Sbjct: 121 AIPLI 125
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 120 (47.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG ++ AQR + K++ ++ AT GI+ V VI++ LP + E Y GR
Sbjct: 295 HGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGR 354
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
GR G++ + + + D +R+ I Q + Q
Sbjct: 355 GGRFGRKGVAINFVTADD-VRMMREIEQFYSTQ 386
Score = 62 (26.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 28/103 (27%), Positives = 47/103 (45%)
Query: 362 IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPN--QREIINATMSGHDVFVLMPTGG 419
IE + D+ S+D K +G RP+ Q+ I + G+DV +G
Sbjct: 16 IESNYDEITDSFDSMELKPELLRGVYAYGFE--RPSAIQQRAILPIVKGNDVIAQAQSGT 73
Query: 420 GKSLTYQLPAL--ICPGI----TLVISPLVSLIQDQIMHLLQA 456
GK+ T+ + AL + P + L+++P L Q QI ++ A
Sbjct: 74 GKTATFSISALQKLDPNVKACQALIVAPTRELAQ-QIQKVVIA 115
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 112 (44.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 20/86 (23%), Positives = 47/86 (54%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG + +R +V +++ + I+ AT G++ D++FVI++ P + E Y GR
Sbjct: 407 HGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGR 466
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMI 714
GR ++ + ++++++ + K ++
Sbjct: 467 TGRSDKKGTAYTFFTHTNASKAKDLL 492
Score = 74 (31.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
MSG D+ + TG GK+L + LPAL+
Sbjct: 164 MSGRDIISIAKTGSGKTLAFMLPALV 189
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 112 (44.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 30/110 (27%), Positives = 51/110 (46%)
Query: 626 AFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 685
A+ G + +R ++ + ++NI+ AT GI+ PD+ VI+ LP+S + Y
Sbjct: 274 AWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHR 333
Query: 686 CGRAGRDGQRSSCVLYYSYSD---FIRVKHMISQGVAEQ--SPFTPGHNR 730
GR GR G++ + D RV+ I + V E+ P H +
Sbjct: 334 IGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKK 383
Score = 70 (29.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 395 RPNQ--REIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
RP Q E I + G DV PTG GK+ + +PAL
Sbjct: 25 RPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 112 (44.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 30/110 (27%), Positives = 51/110 (46%)
Query: 626 AFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQE 685
A+ G + +R ++ + ++NI+ AT GI+ PD+ VI+ LP+S + Y
Sbjct: 274 AWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHR 333
Query: 686 CGRAGRDGQRSSCVLYYSYSD---FIRVKHMISQGVAEQ--SPFTPGHNR 730
GR GR G++ + D RV+ I + V E+ P H +
Sbjct: 334 IGRTGRAGKKGIAISLVEAHDQPMMARVERYIKEEVKERFIDGLRPKHKK 383
Score = 70 (29.7 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 395 RPNQ--REIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
RP Q E I + G DV PTG GK+ + +PAL
Sbjct: 25 RPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 97 (39.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 630 GSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRA 689
G ++ QR + + +SK + I+ T G++ +V VI+ +PK E + GR
Sbjct: 278 GELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRT 337
Query: 690 GRDGQRSSCVLYYSYSDFIRVKHM 713
GR G + + +D++ +K++
Sbjct: 338 GRAGTKGDAISLVGPNDWLSLKNV 361
Score = 86 (35.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 38/140 (27%), Positives = 66/140 (47%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--ICPGITL--------VISPLVSLIQ 447
Q++ I A M+GHD+ TG GK+L + +PAL + L +++P L +
Sbjct: 28 QQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKRDPRVVILTPTRELAK 87
Query: 448 DQI--MHLLQANIP--ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLL 503
+ L AN A + G + +Q ++L++ + + + TP ++A D L
Sbjct: 88 QVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK------EPEFIVATPGRLA--DHLT 139
Query: 504 RQLESLNARELLARIVIDEA 523
+ LN ELL ++DEA
Sbjct: 140 QGHFHLNGLELL---ILDEA 156
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 97 (39.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 630 GSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRA 689
G ++ QR + + +SK + I+ T G++ +V VI+ +PK E + GR
Sbjct: 278 GELNQGQRNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRT 337
Query: 690 GRDGQRSSCVLYYSYSDFIRVKHM 713
GR G + + +D++ +K++
Sbjct: 338 GRAGTKGDAISLVGPNDWLSLKNV 361
Score = 86 (35.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 38/140 (27%), Positives = 66/140 (47%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--ICPGITL--------VISPLVSLIQ 447
Q++ I A M+GHD+ TG GK+L + +PAL + L +++P L +
Sbjct: 28 QQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRLSKNRALSKRDPRVVILTPTRELAK 87
Query: 448 DQI--MHLLQANIP--ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLL 503
+ L AN A + G + +Q ++L++ + + + TP ++A D L
Sbjct: 88 QVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK------EPEFIVATPGRLA--DHLT 139
Query: 504 RQLESLNARELLARIVIDEA 523
+ LN ELL ++DEA
Sbjct: 140 QGHFHLNGLELL---ILDEA 156
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 136 (52.9 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 31/123 (25%), Positives = 60/123 (48%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + + ++ AT G++ P+V VI S PK +E Y GR
Sbjct: 470 HGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 529
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + + ++ ++Q EQ R V ++ +++ ++++ +
Sbjct: 530 TGRAGRTGICICFYQHKE----EYQLAQ--VEQKAGIK-FKRIGVPSATEIIKASSKDAI 582
Query: 749 RMV 751
R++
Sbjct: 583 RLL 585
Score = 51 (23.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P Q + SG D+ TG GK+ ++ +P ++
Sbjct: 213 PIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIV 248
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 136 (52.9 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 31/123 (25%), Positives = 60/123 (48%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + + ++ AT G++ P+V VI S PK +E Y GR
Sbjct: 470 HGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 529
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + + ++ ++Q EQ R V ++ +++ ++++ +
Sbjct: 530 TGRAGRTGICICFYQHKE----EYQLAQ--VEQKAGIK-FKRIGVPSATEIIKASSKDAI 582
Query: 749 RMV 751
R++
Sbjct: 583 RLL 585
Score = 51 (23.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P Q + SG D+ TG GK+ ++ +P ++
Sbjct: 213 PIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIV 248
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 112 (44.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 29/95 (30%), Positives = 42/95 (44%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G K HG + P +R V KQ + E I AT GI+ V VI++ LP ++
Sbjct: 269 GMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDF 328
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD---FIRVKHM 713
Y GR R G + Y +D +R++ M
Sbjct: 329 YVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKM 363
Score = 69 (29.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 42/152 (27%), Positives = 69/152 (45%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--ICPG---ITLVIS-P---LVSLIQD 448
Q+ +I A + V TG GK+ Y LP L I P + +VI+ P L + I
Sbjct: 31 QKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQ 90
Query: 449 QIMHLLQANIPATFLSGN-MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
+ + + Q + S + T++Q+ + +L + L+ TP ++A D++ Q
Sbjct: 91 EALKITQGEEGSQIRSKCFIGGTDKQKSIDKLK---IQPHLVVGTPGRIA--DLIKEQAL 145
Query: 508 SLNARELLARIVIDEAHCVSQWGHDFRPDYQG 539
S++ E L VIDEA + G DY G
Sbjct: 146 SVHKAESL---VIDEADLMLDMGFLADVDYIG 174
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 112 (44.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR + + + ++ AT G++ P+V VIH+ LP E + GR
Sbjct: 381 HGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGR 440
Query: 689 AGRDGQRSSCVLYYSYS 705
GR G+ S +L ++ S
Sbjct: 441 TGRAGKEGSAILMHTSS 457
Score = 75 (31.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 360 NYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGG 419
N +E + ++ + ++LE + +K H F P QR ++ + G D+ TG
Sbjct: 92 NNVEADDGEELAISKLSLPQRLEESLEKRGITHLF-PIQRAVLVPALQGRDIIARAKTGT 150
Query: 420 GKSLTYQLPAL 430
GK+L + +P +
Sbjct: 151 GKTLAFGIPII 161
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 114 (45.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A HG A+R +V ++ + I+ AT G++ DV++VI++ P S+E
Sbjct: 368 GWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLED 427
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G + + +++ ++
Sbjct: 428 YVHRIGRTGRAGAKGTAYTFFTVAN 452
Score = 68 (29.0 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
M G D+ + TG GK+L+Y LPA++
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIV 159
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 105 (42.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 614 FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
F +V G A + P QR + KQ+ + +I ++ +T A GI+ V+ V+++
Sbjct: 401 FLLVQAFGGVTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNY 460
Query: 674 SLPKSIEGYHQECGR---AGRDGQRSSCVLYYSYSDFIRVKHMISQG 717
P+ + Y GR AG+ GQ + +L F+R M+ +G
Sbjct: 461 DAPQYLRTYVHRVGRTARAGKSGQAFTLLLKVQERRFLR---MLEEG 504
Score = 78 (32.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 32/128 (25%), Positives = 56/128 (43%)
Query: 410 DVFVLMPTGGGKSLTYQLPAL-------ICPGITLVISPLVSLIQDQIMHLLQANIPAT- 461
D+ V PTG GK+L + +P + +C LV+ P L Q Q+ + AT
Sbjct: 128 DLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKELAQ-QVSKVFNVYTDATP 186
Query: 462 ----FLSGNMEWTEQQEILRELNSD--YCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515
++G ++QE L + +D C ++ TP ++ + Q + + L
Sbjct: 187 LRVALITGQKSLAKEQESLVQKTADGFRCLADIMVATPGRLVDH---IDQTPGFSLQHLR 243
Query: 516 ARIVIDEA 523
++IDEA
Sbjct: 244 F-LIIDEA 250
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 111 (44.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 299 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 358
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 359 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 399
Score = 68 (29.0 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
Q+ I + G DV +G GK+ T+ + L C I L+++P L IQ
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 125 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 174
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 175 SLRTRAI-KMLVLDEA 189
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 111 (44.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 299 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 358
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 359 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 399
Score = 68 (29.0 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
Q+ I + G DV +G GK+ T+ + L C I L+++P L IQ
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 125 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 174
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 175 SLRTRAI-KMLVLDEA 189
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 111 (44.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 299 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 358
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 359 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 399
Score = 68 (29.0 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
Q+ I + G DV +G GK+ T+ + L C I L+++P L IQ
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 125 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 174
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 175 SLRTRAI-KMLVLDEA 189
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 111 (44.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 299 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 358
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 359 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 399
Score = 68 (29.0 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
Q+ I + G DV +G GK+ T+ + L C I L+++P L IQ
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 125 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 174
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 175 SLRTRAI-KMLVLDEA 189
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 111 (44.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 299 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 358
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 359 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 399
Score = 68 (29.0 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
Q+ I + G DV +G GK+ T+ + L C I L+++P L IQ
Sbjct: 65 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 125 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 174
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 175 SLRTRAI-KMLVLDEA 189
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 111 (44.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 300 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 359
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 360 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 400
Score = 68 (29.0 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/136 (27%), Positives = 63/136 (46%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
Q+ I + G DV +G GK+ T+ + L C I L+++P L IQ
Sbjct: 66 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 125
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 126 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 175
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 176 SLRTRAI-KMLVLDEA 190
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 116 (45.9 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KAA HG R +Q+S+ ++ ++ AT G++ PD+ FV++ LP E
Sbjct: 285 GIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPED 344
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G+ + + S D
Sbjct: 345 YVHRVGRTGRAGKSGTAISLVSPKD 369
Score = 63 (27.2 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
K G + P Q+E I G D+ TG GK+ + LP L
Sbjct: 17 KACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 117 (46.2 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G +A HG +R FV + +I+ AT G++ DV+FVI++ P + E
Sbjct: 428 GWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSED 487
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSG 737
Y GR GR + +++S+ + +I V ++ T N+A +G
Sbjct: 488 YVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQ--VLREANQTINPKLMNMAMNG 541
Score = 68 (29.0 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
MSG D+ + TG GK+L Y LPA++
Sbjct: 192 MSGRDLVGVAQTGSGKTLAYVLPAVV 217
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 111 (44.1 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 299 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 358
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 359 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 399
Score = 66 (28.3 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 38/136 (27%), Positives = 66/136 (48%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL---IQD 448
QR+I+ M ++ V+ +G GK+ T+ + L C I L+++P L IQ
Sbjct: 66 QRKIL-VVMKSNNAVVISQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 124
Query: 449 QIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
++ L N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 125 GLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR-- 174
Query: 508 SLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 175 SLRTRAI-KMLVLDEA 189
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 133 (51.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 30/123 (24%), Positives = 59/123 (47%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + + ++ AT G++ P+V V+ S PK +E Y GR
Sbjct: 469 HGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 528
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + + ++ ++Q EQ R V + +++ ++++ +
Sbjct: 529 TGRAGRTGVCICFYQHKE----EYQLAQ--VEQKAGIK-FKRIGVPSPTEIIKASSKDAI 581
Query: 749 RMV 751
R++
Sbjct: 582 RLL 584
Score = 50 (22.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLP 428
P Q + + SG D+ TG GK+ ++ +P
Sbjct: 212 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 244
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 133 (51.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
+ G++ HG QR + + N++ AT G GI+ PDV VI++ +PK I
Sbjct: 598 KAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHI 657
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSD---FIRVKHMISQGVAEQSPFTPGH--NRF 731
E Y GR GR G+ + + D F +K M+ Q + P H +RF
Sbjct: 658 EMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRF 714
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q I + DV + TG GK+ + LP L
Sbjct: 338 PIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 118 (46.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 34/107 (31%), Positives = 50/107 (46%)
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 676
SLE G+ A HG QR F +I+ AT G GI+ DV V+++ +
Sbjct: 670 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMA 729
Query: 677 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K+IE Y GR GR G+ + + + D V + + Q + E SP
Sbjct: 730 KNIEDYIHRIGRTGRAGKSGVAMTFLTKEDS-SVFYDLKQAILE-SP 774
Score = 65 (27.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ W + P LE K G P QR+ I + D+ + TG GK+ + +
Sbjct: 378 RNWKEYSLP-PHILEVIEK--CGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 434
Query: 428 PALICPGITLVISPLVSLIQD 448
P L+ IT + P + I+D
Sbjct: 435 PLLVW--ITTL--PKIDRIED 451
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 109 (43.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E G A HG D +R +V +++ I+ AT GI+ + +VI++ +P +I
Sbjct: 382 EDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNI 441
Query: 680 EGYHQECGRAGRDGQRSSCVLYYS 703
E Y GR GR G + + +++
Sbjct: 442 EDYVHRIGRTGRAGATGTAISFFT 465
Score = 70 (29.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 39/145 (26%), Positives = 70/145 (48%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPA--------LICPG---ITLVISPLVSL---IQDQIM 451
+SG D+ + TG GK+L+Y LP L+ PG I LV++P L IQ +
Sbjct: 148 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECS 207
Query: 452 HLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN 510
++ I T + G + ++Q +R+L+ +++ TP ++ D+L ++ N
Sbjct: 208 KFGHSSRIRNTCVYGGVPKSQQ---IRDLSRGS---EIVIATPGRLI--DML--EIGKTN 257
Query: 511 ARELLARIVIDEAHCVSQWGHDFRP 535
+ + +V+DEA + G F P
Sbjct: 258 LKRV-TYLVLDEADRMLDMG--FEP 279
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 131 (51.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + ++ AT G++ P+V VI S PK +E Y GR
Sbjct: 468 HGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGR 527
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + + ++ + Q EQ R V ++ +++ ++++ +
Sbjct: 528 TGRAGRTGVCICFYQHKE----EYQLVQ--VEQKAGIK-FKRIGVPSATEIIKASSKDAI 580
Query: 749 RMV 751
R++
Sbjct: 581 RLL 583
Score = 51 (23.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q + + SG D+ TG GK+ ++ +P +
Sbjct: 211 PIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLI 245
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 113 (44.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG+ D R + I+ AT G++ D+ VI++ P +IE Y GR
Sbjct: 560 HGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGR 619
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMIS-QGVAEQSPFTPGHN---RFNVANSGRVLE 741
GR G++ + + +++ D+ K +I AEQ HN RF R E
Sbjct: 620 TGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNMARRFKAMKDKRAAE 676
Score = 68 (29.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 381 LEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
LE K F S P Q + + GHD+ + TG GK+L + LP +I
Sbjct: 295 LEEITKMGFSKPS--PIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMI 343
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 118 (46.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G K HG QR + + + +I+ AT G GI+ DV V+++ + KSIE
Sbjct: 597 GFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIED 656
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD---FIRVKHMISQGVAEQSP 723
Y GR GR G+ + + + D + +K ++ + P
Sbjct: 657 YTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCP 701
Score = 63 (27.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ W FP + +A K G P QR+ I + DV + TG GK+ + L
Sbjct: 301 RNWEEAGFP-DEVYQA--VKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLL 357
Query: 428 PALI 431
P L+
Sbjct: 358 PLLV 361
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 113 (44.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG +D A+R + +++ ++ T GI+ V VI++ LP + E Y GR
Sbjct: 299 HGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGR 358
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMIS 715
+GR G++ + + + +D ++K + S
Sbjct: 359 SGRFGRKGVAINFVTENDARQLKEIES 385
Score = 61 (26.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 31/104 (29%), Positives = 50/104 (48%)
Query: 362 IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPN---QREIINATMSGHDVFVLMPTG 418
IEG+ DQ S+D K E + ++G +P+ +R I+ T +G DV +G
Sbjct: 20 IEGNYDQVVESFDDMELK--EELLRGIYGFGFEKPSAIQKRAIVPCT-TGKDVIAQAQSG 76
Query: 419 GGKSLTYQLPALIC-----PGI-TLVISPLVSLIQDQIMHLLQA 456
GK+ T+ + L P + LV++P L Q QI ++ A
Sbjct: 77 TGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQ-QIQKVMSA 119
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 128 (50.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/123 (23%), Positives = 58/123 (47%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + ++ AT G++ P+V V+ PK +E Y GR
Sbjct: 464 HGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 523
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + + ++ ++Q EQ R V ++ +++ ++++ +
Sbjct: 524 TGRAGRTGVCICFYQHKE----EYQLAQ--VEQKAGIK-FKRIGVPSATEIIKASSKDAI 576
Query: 749 RMV 751
R++
Sbjct: 577 RLL 579
Score = 53 (23.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 367 DQKWSSW-DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY 425
+QK ++ +FP +++ K G + P Q + + SG D+ TG GK+ ++
Sbjct: 178 EQKEGAFSNFPISEET-VKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSF 236
Query: 426 QLPAL 430
+P +
Sbjct: 237 AIPLI 241
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 102 (41.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 27/100 (27%), Positives = 47/100 (47%)
Query: 614 FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
F +V G A + P QR + KQ+ + +I ++ +T A GI+ V V+++
Sbjct: 521 FLLVQAFGGVDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 580
Query: 674 SLPKSIEGYHQECGR---AGRDGQRSSCVLYYSYSDFIRV 710
P+ + Y GR AG+ GQ + +L F+R+
Sbjct: 581 DAPQYLRTYVHRVGRTARAGKTGQAFTLLLKVQERRFLRM 620
Score = 78 (32.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 31/127 (24%), Positives = 59/127 (46%)
Query: 410 DVFVLMPTGGGKSLTYQLPAL-------ICPGITLVISPLVSLIQD--QIMHLLQANIP- 459
D+ V PTG GK+L + +P + +C LV+ P L Q ++ ++ P
Sbjct: 251 DLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPL 310
Query: 460 -ATFLSGNMEWTEQQEILRELNSD-Y-CKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516
+ ++G ++QE L + +D Y C ++ TP ++ + Q + ++L
Sbjct: 311 RVSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDH---IDQTPGFSLQQLRF 367
Query: 517 RIVIDEA 523
++IDEA
Sbjct: 368 -LIIDEA 373
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 122 (48.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 34/107 (31%), Positives = 50/107 (46%)
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 676
SLE G+ A HG QR F +I+ AT G GI+ DV V+++ +
Sbjct: 682 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 741
Query: 677 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K+IE Y GR GR G+ + + + D V + + Q + E SP
Sbjct: 742 KNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA-VFYELKQAILE-SP 786
Score = 59 (25.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P QR+ I + D+ + TG GK+ + +P L+
Sbjct: 415 PIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 122 (48.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 34/107 (31%), Positives = 50/107 (46%)
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 676
SLE G+ A HG QR F +I+ AT G GI+ DV V+++ +
Sbjct: 683 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 677 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K+IE Y GR GR G+ + + + D V + + Q + E SP
Sbjct: 743 KNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA-VFYELKQAILE-SP 787
Score = 59 (25.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P QR+ I + D+ + TG GK+ + +P L+
Sbjct: 416 PIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 122 (48.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 34/107 (31%), Positives = 50/107 (46%)
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 676
SLE G+ A HG QR F +I+ AT G GI+ DV V+++ +
Sbjct: 683 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 677 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K+IE Y GR GR G+ + + + D V + + Q + E SP
Sbjct: 743 KNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA-VFYELKQAILE-SP 787
Score = 59 (25.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P QR+ I + D+ + TG GK+ + +P L+
Sbjct: 416 PIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 122 (48.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 34/107 (31%), Positives = 50/107 (46%)
Query: 618 SLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 676
SLE G+ A HG QR F +I+ AT G GI+ DV V+++ +
Sbjct: 683 SLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMA 742
Query: 677 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K+IE Y GR GR G+ + + + D V + + Q + E SP
Sbjct: 743 KNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA-VFYELKQAILE-SP 787
Score = 59 (25.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P QR+ I + D+ + TG GK+ + +P L+
Sbjct: 416 PIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
A HG +R +V Q+ + ++ AT G++ D+R VI++ P +E Y
Sbjct: 706 AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765
Query: 685 ECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS--QGVAEQSP 723
GR GR G +++ D+ +I +G +Q P
Sbjct: 766 RIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVP 806
Score = 75 (31.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 40/154 (25%), Positives = 75/154 (48%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CP-----GIT-LVISP---L 442
P Q + + D+ + TG GK+L Y +PA I C G T L+++P L
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTREL 519
Query: 443 VSLIQDQIMHLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDV 501
+ IQD+ + +++ I T L G Q + L E +D ++ TP ++ +D+
Sbjct: 520 ATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL-ERGAD-----IVVATPGRL--NDI 571
Query: 502 LLRQLESLNARELLARIVIDEAHCVSQWGHDFRP 535
L +++ ++ +++ + +V+DEA + G F P
Sbjct: 572 L--EMKMIDFQQV-SLLVLDEADRMLDMG--FEP 600
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 99 (39.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G K A HG + +R + + ++ AT G++ P V+ V++ + P ++E
Sbjct: 347 GFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVED 406
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD 706
Y GR GR G + ++ +D
Sbjct: 407 YVHRIGRTGRAGADGHAITLFTETD 431
Score = 76 (31.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 407 SGHDVFVLMPTGGGKSLTYQLPAL-----------ICPGITLVISP---LVSLIQDQIMH 452
+G DV + TG GK+L + LP L C + +VISP L I DQ++
Sbjct: 109 AGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVK 168
Query: 453 LLQ-ANIPATFLSGNMEWTEQQEILR 477
+ +I + G ++ EQ+E L+
Sbjct: 169 FAEKVDIQVACIFGGVKKDEQREALK 194
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 125 (49.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + ++ AT G++ P+V V+ S PK +E Y GR
Sbjct: 395 HGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGR 454
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHM-ISQGV 718
GR G+ C+ +Y + +++++ + G+
Sbjct: 455 TGRAGRTGICICFYQRKEENQLRYVEVKAGI 485
Score = 58 (25.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q + N SG DV TG GK+ ++ +P +
Sbjct: 138 PVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLI 172
Score = 39 (18.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1009 SKYGVRLLETIESTIKEFYK 1028
SK +R L+++ T E++K
Sbjct: 503 SKDAIRCLDSVPQTAIEYFK 522
Score = 37 (18.1 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1083 EVINHNEPDSYECVDDLDFDEYEYVYE 1109
++I + D+ C+D + EY E
Sbjct: 497 DIIKASSKDAIRCLDSVPQTAIEYFKE 523
>TIGR_CMR|SPO_3098 [details] [associations]
symbol:SPO_3098 "ATP-dependent helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR013701
InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03724 RefSeq:YP_168301.1 ProteinModelPortal:Q5LNV5
GeneID:3195597 KEGG:sil:SPO3098 PATRIC:23379641
HOGENOM:HOG000036041 OMA:SYEDAPR ProtClustDB:CLSK2308438
InterPro:IPR026362 TIGRFAMs:TIGR04121 Uniprot:Q5LNV5
Length = 802
Score = 100 (40.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G +HGS+D AQR V+ + E+ I T + +GI+ DV VI PK+++
Sbjct: 273 GLPIGIHHGSLDRAQRERVEAAMVRGELRAIVCTGSLDLGIDWGDVDLVIQIGAPKNVKR 332
Query: 682 YHQECGRA 689
Q GRA
Sbjct: 333 LVQRIGRA 340
Score = 80 (33.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 39/145 (26%), Positives = 63/145 (43%)
Query: 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--ICPGI-----TLVISPLVSL 445
S P+Q+ + + ++ PTGGGK++ LP L + G TL +SPL +L
Sbjct: 18 SVHPHQQAMFDRA-DRPATLLIAPTGGGKTMAGFLPTLAELAEGQHQGLHTLYVSPLKAL 76
Query: 446 IQDQIMHLLQANIPATFLSGNME-WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
D I L+ + L+ +E T ++ +L TPE +A LL
Sbjct: 77 AAD-IKRNLRTPVDEIGLAVRIEDRTGDTSATQKKRQRADPPHILLTTPESLA----LLT 131
Query: 505 QLESLNAREL-LARIVIDEAHCVSQ 528
E L R+V+DE H +++
Sbjct: 132 SYEDAPRMFAGLRRVVVDEIHALAE 156
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 127 (49.8 bits), Expect = 0.00031, P = 0.00031
Identities = 76/351 (21%), Positives = 148/351 (42%)
Query: 385 NKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI-------CPGITL 437
N K G P Q ++I + G DV TG GK+ + LP ++ P L
Sbjct: 218 NLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQSKSPS-GL 276
Query: 438 VISPLVSL---IQDQIMHLLQANIPA---TFLSGNMEWTEQQEILRELNSDYCKYKLLYV 491
V++P L I+ Q L+ + +P L G + Q+ LR+ + +++
Sbjct: 277 VLTPTRELAIQIERQAKELM-SGLPCLRTALLVGGLPAPPQRHRLRQ------RIQVIIA 329
Query: 492 TPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTP 551
TP ++ D++ ++ L + ++ +V+DEA + + G F+ Q L +L+Q +
Sbjct: 330 TPGRLL--DIIKQRSVELGSIKI---VVVDEADTMLKMG--FQQ--QVLDVLEQLPHDCQ 380
Query: 552 VXXXXXXXXXSVKEDVVQAL-GLVNCIIFRQSFNRPN-----LWMDCEKVAERLQVGLSY 605
SV++ Q L V ++ P+ LW+ E+ A++ ++
Sbjct: 381 TVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWV--EEPAKKKKLFEIL 438
Query: 606 GHFFLLKEFYVVSLEC---------------GHKAAFYHGSIDPAQRAFVQKQWSKDEIN 650
L K +V ++C G K+ H +R + K + + +
Sbjct: 439 NDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYD 498
Query: 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701
++ +T G G++ V+ V++ +P S++ Y + GR GR GQ + + +
Sbjct: 499 VVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITF 549
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 91 (37.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 28/100 (28%), Positives = 46/100 (46%)
Query: 614 FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673
F +V G A + + P +R K++ + +I ++ +T A GI+ V VI++
Sbjct: 531 FLLVQAFGGITVAEFSSRLPPNERQRTMKEFEQGKIQLLISTDATARGIDIKGVNCVINY 590
Query: 674 SLPKSIEGYHQECGR---AGRDGQRSSCVLYYSYSDFIRV 710
P+ I Y GR AG+ G S VL F+R+
Sbjct: 591 DTPQFIRTYIHRVGRTARAGKAGLAFSMVLRIQERRFLRM 630
Score = 87 (35.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 37/146 (25%), Positives = 67/146 (45%)
Query: 379 KKLEANNKKVFGNHSFRPNQREIINATM----SGH----------DVFVLMPTGGGKSLT 424
KKL+ N G SF P Q E+I A + +G+ D+ V PTG GK+L+
Sbjct: 218 KKLQMN-----GIESFFPVQAEVIPAVLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLS 272
Query: 425 YQLPAL-------ICPGITLVISPLVSLIQD--QIMHLLQ--ANIPATFLSGNMEWTEQQ 473
+ +P + +C LV+ P L Q ++ ++ + ++G + ++Q
Sbjct: 273 FVIPIVQVLLDRVVCQVRALVVLPTKELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKEQ 332
Query: 474 EILRELN-SDYCKYK-LLYVTPEKVA 497
E+L + + YC ++ TP ++A
Sbjct: 333 EMLVQKKVTGYCSLADIIVATPGRLA 358
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 100 (40.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/103 (29%), Positives = 50/103 (48%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A + P QR + KQ+ + +I ++ +T A GI+ V VI++ P+ +
Sbjct: 498 GVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRT 557
Query: 682 YHQECGR---AGRDGQRSSCVLYYSYSDFIRVKHMISQ-GVAE 720
Y GR AG+ GQ + +L F++ M+S+ GV E
Sbjct: 558 YVHRVGRTARAGKTGQAFTLLLKVQERKFLQ---MVSEAGVPE 597
Score = 77 (32.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/127 (23%), Positives = 57/127 (44%)
Query: 410 DVFVLMPTGGGKSLTYQLPAL-------ICPGITLVISPLVSLIQD--QIMHLLQANIP- 459
D+ V PTG GK+L + +P + +C LV+ P L Q ++ ++ P
Sbjct: 219 DLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPL 278
Query: 460 -ATFLSGNMEWTEQQEILRELNSD--YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516
++G ++QE L + +D C ++ TP ++ + Q + ++L
Sbjct: 279 RVALVTGQKSLAKEQESLVQKTADGFCCLADIVVATPGRLVDH---IDQTPGFSLQQLRF 335
Query: 517 RIVIDEA 523
++IDEA
Sbjct: 336 -LIIDEA 341
>DICTYBASE|DDB_G0293740 [details] [associations]
symbol:ddx51 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293740 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000218
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 OMA:HIDQTPG RefSeq:XP_629093.1
ProteinModelPortal:Q54BD6 EnsemblProtists:DDB0234210 GeneID:8629386
KEGG:ddi:DDB_G0293740 Uniprot:Q54BD6
Length = 563
Score = 92 (37.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 28/73 (38%), Positives = 37/73 (50%)
Query: 359 VNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREI---INATMSGHDVFVLM 415
+NY E N+ + F + L NN K + P Q+EI IN T GHD+ V
Sbjct: 4 INYNENINNNNNTLESFGIEEWL-INNLKEQSIINLFPVQQEIVPFINRT-EGHDICVCA 61
Query: 416 PTGGGKSLTYQLP 428
PTG GK+L Y +P
Sbjct: 62 PTGSGKTLAYAIP 74
Score = 84 (34.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
Y S+ +RA + ++ ++I+I+ + G++ D+ VI+++ P +I Y G
Sbjct: 362 YSSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVG 421
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQ-GVAEQS 722
R R G + Y+ D +K+ IS AE+S
Sbjct: 422 RTARAGNFG---VSYTIVDKSEIKYYISMMKKAERS 454
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 125 (49.1 bits), Expect = 0.00032, P = 0.00032
Identities = 81/343 (23%), Positives = 134/343 (39%)
Query: 381 LEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGI- 435
L+A +K + S P Q + I A ++G DV TG GK+ + LP L P +
Sbjct: 13 LKAIEEKGYNTPS--PIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVR 70
Query: 436 -----TLVISP---LVSLIQDQIMHLLQANIP--ATFLSGNMEWTEQQEILRELNSDYCK 485
L+++P L + IQD +M L ++P + + G ++ Q + + CK
Sbjct: 71 ANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQMQRM-------CK 122
Query: 486 -YKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
+L TP ++ D+ + + E+L V+DEA + G R ++ L +L
Sbjct: 123 GADILVATPGRLM--DLYNQNAVKFDQLEIL---VLDEADRMLDMGF-IRDIHKILKLLP 176
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQ-------------ALGLVNCIIFRQSFNRPNLWMD 591
+K N + + +V A + CI +P++ +
Sbjct: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236
Query: 592 CEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651
K QV + E G AA HG+ R + E+ I
Sbjct: 237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 694
+ AT GI+ P + V++ LPK E Y GR GR G+
Sbjct: 297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGE 339
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 125 (49.1 bits), Expect = 0.00032, P = 0.00032
Identities = 81/343 (23%), Positives = 134/343 (39%)
Query: 381 LEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGI- 435
L+A +K + S P Q + I A ++G DV TG GK+ + LP L P +
Sbjct: 13 LKAIEEKGYNTPS--PIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVR 70
Query: 436 -----TLVISP---LVSLIQDQIMHLLQANIP--ATFLSGNMEWTEQQEILRELNSDYCK 485
L+++P L + IQD +M L ++P + + G ++ Q + + CK
Sbjct: 71 ANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQMQRM-------CK 122
Query: 486 -YKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
+L TP ++ D+ + + E+L V+DEA + G R ++ L +L
Sbjct: 123 GADILVATPGRLM--DLYNQNAVKFDQLEIL---VLDEADRMLDMGF-IRDIHKILKLLP 176
Query: 545 QKFPNTPVXXXXXXXXXSVKEDVVQ-------------ALGLVNCIIFRQSFNRPNLWMD 591
+K N + + +V A + CI +P++ +
Sbjct: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236
Query: 592 CEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651
K QV + E G AA HG+ R + E+ I
Sbjct: 237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 694
+ AT GI+ P + V++ LPK E Y GR GR G+
Sbjct: 297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGE 339
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 100 (40.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/103 (29%), Positives = 50/103 (48%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A + P QR + KQ+ + +I ++ +T A GI+ V VI++ P+ +
Sbjct: 502 GVSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQYLRT 561
Query: 682 YHQECGR---AGRDGQRSSCVLYYSYSDFIRVKHMISQ-GVAE 720
Y GR AG+ GQ + +L F++ M+S+ GV E
Sbjct: 562 YVHRVGRTARAGKTGQAFTLLLKVQERKFLQ---MVSEAGVPE 601
Score = 77 (32.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 30/127 (23%), Positives = 57/127 (44%)
Query: 410 DVFVLMPTGGGKSLTYQLPAL-------ICPGITLVISPLVSLIQD--QIMHLLQANIP- 459
D+ V PTG GK+L + +P + +C LV+ P L Q ++ ++ P
Sbjct: 223 DLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPL 282
Query: 460 -ATFLSGNMEWTEQQEILRELNSD--YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516
++G ++QE L + +D C ++ TP ++ + Q + ++L
Sbjct: 283 RVALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDH---IDQTPGFSLQQLRF 339
Query: 517 RIVIDEA 523
++IDEA
Sbjct: 340 -LIIDEA 345
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 113 (44.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 29/105 (27%), Positives = 45/105 (42%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ + HG QR + +I+ AT G GI+ DV VI++ + K+IE
Sbjct: 690 GYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIED 749
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSD---FIRVKHMISQGVAEQSP 723
Y GR GR G+ + + + D F +K +S P
Sbjct: 750 YTHRIGRTGRAGKTGCAISFVTKDDSALFYDLKQCVSASPVSTCP 794
Score = 66 (28.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ W+ FP K++ KV G P QR+ I + D+ + TG GK+L + +
Sbjct: 394 RSWNESGFP--KEIIDIIDKV-GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLI 450
Query: 428 PAL 430
P L
Sbjct: 451 PLL 453
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 124 (48.7 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + + ++ AT G++ P+V V+ PK +E Y GR
Sbjct: 540 HGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 599
Query: 689 AGRDGQRSSCVLYYSYSD 706
GR G+ C+ +Y + +
Sbjct: 600 TGRAGRTGICICFYQHKE 617
Score = 55 (24.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 356 IIKVNYIEGSNDQKWSSW-DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVL 414
+ V+ E S +QK ++ +FP +++ K G P Q + + SG D+
Sbjct: 243 VFSVDLEEISVEQKEGAFSNFPISEET-IKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQ 301
Query: 415 MPTGGGKSLTYQLPAL 430
TG GK+ ++ +P +
Sbjct: 302 ARTGTGKTFSFAIPLI 317
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 105 (42.0 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684
AA HG +R V Q+ ++ AT G++ D+R V+++ P +E Y
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 685 ECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS--QGVAEQSP 723
GR GR G ++ D +I +G ++ P
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVP 529
Score = 75 (31.5 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------PGIT-LVISP---L 442
P Q + M G D+ + TG GK+L Y +P + G T LV+SP L
Sbjct: 183 PIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTREL 242
Query: 443 VSLIQDQIMHLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDV 501
+ IQ++ + +++ I T L G Q LR+L ++ TP ++ +D+
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQ---LRDLERGA---DIVVATPGRL--NDI 294
Query: 502 LLRQLESLNARELLARIVIDEAHCVSQWGHDFRP 535
L ++ ++ R++ + +V+DEA + G F P
Sbjct: 295 L--EMRRISLRQI-SYLVLDEADRMLDMG--FEP 323
Score = 40 (19.1 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 983 LQHLSKRVPRTEEELLEINGIGKAKVSKYG 1012
L+ ++RVP E+ G G K S++G
Sbjct: 521 LEGANQRVPPQIREMATRGGGGMNKFSRWG 550
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 95 (38.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G + H +R + K + + ++ +T G G++ +V+ V++ +P S++
Sbjct: 469 GLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDE 528
Query: 682 YHQECGRAGRDGQRSSCVLY 701
Y + GR GR GQ + + +
Sbjct: 529 YVHQVGRVGRLGQNGTAITF 548
Score = 81 (33.6 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 43/168 (25%), Positives = 72/168 (42%)
Query: 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI--- 431
FP T L N KK G P Q ++I + G D+ TG GK+ + LP +I
Sbjct: 210 FPET--LNQNLKKS-GYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAF 266
Query: 432 ----CPGITLVISPLVSL---IQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSD 482
P L+++P L I+ Q L+ + L G + Q LR+
Sbjct: 267 SEDKTPS-ALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQ---- 321
Query: 483 YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530
K++ TP ++ D++ + SL+ ++ +V+DEA + + G
Sbjct: 322 --HVKVIIATPGRLL--DIIKQSSVSLSGIKI---VVVDEADTMLKMG 362
>RGD|1310934 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] InterPro:IPR001650
InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 RGD:1310934 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
GO:GO:0004386 eggNOG:COG0513 EMBL:BC091427 IPI:IPI00764536
UniGene:Rn.98470 SMR:Q5BJM0 Ensembl:ENSRNOT00000057582
UCSC:RGD:1310934 HOGENOM:HOG000137600 NextBio:677841
Genevestigator:Q5BJM0 Uniprot:Q5BJM0
Length = 380
Score = 123 (48.4 bits), Expect = 0.00040, P = 0.00040
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I +QR K + + ++ AT G++ P+V VI S P+ +E Y GR
Sbjct: 62 HGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGR 121
Query: 689 AGRDGQRSSCVLYY 702
GR G+ CV +Y
Sbjct: 122 TGRAGRTGICVCFY 135
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 92 (37.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 17/66 (25%), Positives = 38/66 (57%)
Query: 636 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 695
+R + K + + +++ +T G G++ +V+ VI+ +P +++ Y + GRAGR G R
Sbjct: 454 ERNKIVKGLLEGQFDVVISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHR 513
Query: 696 SSCVLY 701
+ + +
Sbjct: 514 GTAITF 519
Score = 89 (36.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 44/177 (24%), Positives = 80/177 (45%)
Query: 385 NKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI-----------CP 433
N K G + P Q +++ ++G DV TG GK++ + LP ++ CP
Sbjct: 184 NLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASPSCP 243
Query: 434 GITLVISPLVSL---IQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488
L+++P L I++Q L++ N+ L G M Q L+ K+
Sbjct: 244 AC-LILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKH------NIKI 296
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQ 545
+ TP ++ ++L ++ L+ + +V+DEA + + G F+ Q L IL+Q
Sbjct: 297 VIGTPGRLL--EILKQKAVQLDH---VRTVVVDEADTMLKMG--FQQ--QVLDILEQ 344
Score = 38 (18.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 26/111 (23%), Positives = 45/111 (40%)
Query: 212 ICNHGCKLGLCPETSSHIQDMKDMLIAISN--ELLDNATNLSPAQT---EKLRQERLQLS 266
IC+ CK ++ D D L N E +N + S Q +L +E+++
Sbjct: 96 ICSLECKAA---HLAAVCADFGDKLFNNKNTPESSENTKSYSYKQDAFISELTEEQIERV 152
Query: 267 K-QIQLL----EGYRQAEERQKSHFSASTTRTYQ---YETPQPAVLKIDPI 309
K ++ ++ E R E Q F R + YE P P +++ P+
Sbjct: 153 KAELGIVSVGTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPTPVQMQMVPV 203
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 111 (44.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 295 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 354
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 355 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 395
Score = 59 (25.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSL-IQDQI 450
Q+ I + G DV +G GK+ T+ + L C I L+++P L +Q Q
Sbjct: 66 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQK 125
Query: 451 MHLLQANIP 459
L +P
Sbjct: 126 SLLATGEVP 134
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 113 (44.8 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G+ A HG + QR ++ + N++ AT G++ P+V+ VI+ + P ++E
Sbjct: 383 GYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVED 442
Query: 682 YHQECGRAGRDGQ 694
Y GR GR GQ
Sbjct: 443 YVHRIGRTGRAGQ 455
Score = 60 (26.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 40/147 (27%), Positives = 70/147 (47%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALIC-------PGI-TLVISP---LVSLIQDQIMHLL 454
+SG DV + TG GK+ + +PA+ GI LVISP L S I D ++ L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLT 206
Query: 455 -QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARE 513
+ + + G + EQ+ L+ K +++ TP ++ D+L Q S++ +
Sbjct: 207 DKVGMQCCCVYGGVPKDEQRIQLK-------KSQVVVATPGRLL--DLL--QEGSVDLSQ 255
Query: 514 LLARIVIDEAHCVSQWGHDFRPDYQGL 540
+ +V+DEA + + G F D + +
Sbjct: 256 V-NYLVLDEADRMLEKG--FEEDIKNI 279
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 124 (48.7 bits), Expect = 0.00048, P = 0.00048
Identities = 82/364 (22%), Positives = 146/364 (40%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQ 449
P Q + I + GHD+ L TG GK+ + +P L P +++P L Q Q
Sbjct: 106 PIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQ-Q 164
Query: 450 IMHLLQA-----NIPATFLSGNMEWTEQ-QEILRELNSDYCKYKLLYVTPEKVAKSDVLL 503
I + + +T + G M +Q ++++R K ++ TP ++ L
Sbjct: 165 IKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMR-------KPHIIIATPGRLMDH---L 214
Query: 504 RQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSV 563
+ + R+L +V+DEA + +F P ILK P +
Sbjct: 215 ENTKGFSLRKLKF-LVMDEADRLLDM--EFGPVLDR--ILKI-IPTQERTTYLFSATMTS 268
Query: 564 KEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQV---GLSYGHF-FLLKEFY---- 615
K D +Q L N + S N + + + + L V GL + +LL EF
Sbjct: 269 KIDKLQRASLTNPVKCAVS----NKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM 324
Query: 616 VV------SLE-----CG---HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661
++ + E C A HG ++ QR + + +I+ AT G
Sbjct: 325 IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARG 384
Query: 662 INKPDVRFVIHHSLPKSIEGYHQECGR---AGRDGQRSSCVLYYSYSDFIRVKHMISQGV 718
++ P V V+++ +P + Y GR AGR G+ S V Y +R++ ++ + +
Sbjct: 385 LDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKL 444
Query: 719 AEQS 722
++S
Sbjct: 445 PKES 448
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 106 (42.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG + R E+ I+ AT GI+ PD+ V+++ P IE Y GR
Sbjct: 369 HGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGR 428
Query: 689 AGRDGQRSSCVLYYSYSD 706
GR G++ + + ++D
Sbjct: 429 TGRAGRKGEAMSFLWWND 446
Score = 66 (28.3 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P Q ++ +SG D + TG GK+L + LPAL+
Sbjct: 109 PIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALL 144
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 124 (48.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 29/123 (23%), Positives = 57/123 (46%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
HG I QR K + ++ AT G++ P+V V+ PK +E Y GR
Sbjct: 540 HGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGR 599
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748
GR G+ C+ +Y + ++ ++Q EQ R V ++ +++ ++++ +
Sbjct: 600 TGRAGRTGVCICFYQNKE----EYQLAQ--VEQKAGIK-FKRIGVPSATEIIKASSKDAI 652
Query: 749 RMV 751
R++
Sbjct: 653 RLL 655
Score = 53 (23.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 367 DQKWSSW-DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY 425
+QK ++ +FP +++ K G + P Q + + SG D+ TG GK+ ++
Sbjct: 254 EQKEGAFSNFPISEET-VKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSF 312
Query: 426 QLPAL 430
+P +
Sbjct: 313 AIPLI 317
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 104 (41.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688
H QR + +++ E+ + T GI+ V VI++ +P S + Y GR
Sbjct: 403 HAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGR 462
Query: 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQS 722
GR G+ + +Y+ D + +K +I+ V +QS
Sbjct: 463 TGRGGRSGKAITFYTKQDSVAIKPIIN--VMKQS 494
Score = 69 (29.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLP 428
F + K+L NN G P Q E I ++ DV PTG GK+L + +P
Sbjct: 127 FSFDKRL-LNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIP 179
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 111 (44.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ P V +I++ LP +
Sbjct: 302 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 361
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 362 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 402
Score = 58 (25.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 31/132 (23%), Positives = 57/132 (43%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQAN 457
Q+ I + G DV +G GK+ T+ + L C + + + +LI L
Sbjct: 67 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC--LDIQVRETQALILAPTRELA-VQ 123
Query: 458 IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK--SDVLLRQLESLNARELL 515
I S ++ + +E+ + + S K ++ +VA+ S + L+ L + R L
Sbjct: 124 IQKVGTSKSLP-VKMKELHKAMGS--FKQEVDLPAGHEVARCISGIQLQLLYMIRRRSLR 180
Query: 516 AR----IVIDEA 523
R +V+DEA
Sbjct: 181 TRAIKMLVLDEA 192
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 101 (40.6 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A HG +R +V ++ + I+ AT GI+ D+ VI++ P + E
Sbjct: 411 GWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSED 470
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
Y GR GR G + + + +++ + + + +++
Sbjct: 471 YVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVT 504
Score = 72 (30.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 42/145 (28%), Positives = 69/145 (47%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPA--------LICPG---ITLVISPLVSL---IQDQIM 451
+SG DV + TG GK+L+Y LPA L+ PG I L+++P L IQ +I
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEIS 234
Query: 452 HLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN 510
+++ I T + G + Q +R+L+ ++ TP ++ D+L + N
Sbjct: 235 KFGKSSRIRNTCVYGGVPKGPQ---IRDLSRGV---EVCIATPGRLI--DML--EAGRTN 284
Query: 511 ARELLARIVIDEAHCVSQWGHDFRP 535
R + +V+DEA + G F P
Sbjct: 285 LRRV-TYLVLDEADRMLDMG--FEP 306
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 103 (41.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 24/102 (23%), Positives = 47/102 (46%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + K++ ++ +T + G++ V +I++ LP +
Sbjct: 294 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINYDLPNNR 353
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D IR+ I Q + Q
Sbjct: 354 ELYIHRIGRSGRYGRKGVAINFVKNDD-IRILRDIEQYYSTQ 394
Score = 66 (28.3 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 39/137 (28%), Positives = 63/137 (45%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGI------TLVISPLVSLIQDQIM 451
Q+ I + G DV +G GK+ T+ + L C I L+++P L QI
Sbjct: 60 QQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELA-GQIQ 118
Query: 452 HLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQL 506
+L A N+ G T E +R+L DY ++ ++ TP +V D++ R+
Sbjct: 119 KVLLALGDYMNVQCHACIGG---TNVGEDIRKL--DYGQH-VVAGTPGRVF--DMIRRR- 169
Query: 507 ESLNARELLARIVIDEA 523
SL R + +V+DEA
Sbjct: 170 -SLRTRAI-KMLVLDEA 184
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 127 (49.8 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 682
+ A HG +R + + D NI+ AT G++ ++ VI++ +P +IE Y
Sbjct: 625 YNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDY 684
Query: 683 HQECGRAGRDGQRSSCVLYYSYSDFIRVK 711
GR GR G++ +L++SY ++ K
Sbjct: 685 IHRIGRTGRAGKKGKSILFFSYDYYMPQK 713
Score = 54 (24.1 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
+SG D+ + TG GK+L + LP +
Sbjct: 322 LSGKDLIGVAETGSGKTLAFVLPCFM 347
Score = 38 (18.4 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 32 NYIRPGLSTPVE-HSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQINFNVN 86
N++ + V+ H DN +++ + +S D + F R + + F N
Sbjct: 115 NHVDNHVDNHVDNHMDNHINNHTHKNVHDDTSYDNNSFDRYQRKRDEIGENGFVQN 170
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 112 (44.5 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG ++ R V K++ ++ +T + G++ P V VI++ LP +
Sbjct: 287 EANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNR 346
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D +R+ I Q + Q
Sbjct: 347 ELYIHRIGRSGRFGRKGVAINFVKQDD-VRILRDIEQYYSTQ 387
Score = 56 (24.8 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 34/133 (25%), Positives = 61/133 (45%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL------ICPGITLVISPLVSL-IQDQI 450
Q+ I A + DV +G GK+ T+ + L + L++SP L +Q Q
Sbjct: 53 QQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQK 112
Query: 451 MHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN 510
+ L + + T E +R+L DY ++ ++ TP +V D++ R+ +L
Sbjct: 113 VVLALGDYMNVQCHACIGGTNLGEDIRKL--DYGQH-VVSGTPGRVF--DMIRRR--NLR 165
Query: 511 ARELLARIVIDEA 523
R + +V+DEA
Sbjct: 166 TRAIKL-LVLDEA 177
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 103 (41.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 29/98 (29%), Positives = 45/98 (45%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY- 682
KA G+++ QR + Q+ + I+ T G++ P V VI+ +PK E Y
Sbjct: 276 KAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYV 335
Query: 683 HQ--ECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGV 718
H+ GRAG G S V + F RV+ + Q +
Sbjct: 336 HRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEI 373
Score = 67 (28.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 379 KKLEANNK--KVFGNHSFRPN---QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
K L +N+ K +++F+ Q++ I T++G D+ TG GK+L + LP L
Sbjct: 8 KDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 103 (41.3 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 29/98 (29%), Positives = 45/98 (45%)
Query: 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY- 682
KA G+++ QR + Q+ + I+ T G++ P V VI+ +PK E Y
Sbjct: 276 KAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYV 335
Query: 683 HQ--ECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGV 718
H+ GRAG G S V + F RV+ + Q +
Sbjct: 336 HRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFLQQEI 373
Score = 67 (28.6 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 379 KKLEANNK--KVFGNHSFRPN---QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
K L +N+ K +++F+ Q++ I T++G D+ TG GK+L + LP L
Sbjct: 8 KDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 103 (41.3 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A HG +R +V ++ + I+ AT G++ DV+FVI++ P S E
Sbjct: 361 GWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED 420
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714
Y GR R + + +++ + + + +I
Sbjct: 421 YVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 453
Score = 68 (29.0 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI 431
P Q + +SG D+ + TG GK+L Y LPA++
Sbjct: 115 PIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 150
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 135 (52.6 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 79/351 (22%), Positives = 145/351 (41%)
Query: 384 NNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL---ICPGIT---L 437
+N K G P Q ++I + G DV TG GK+ + LP + +C T L
Sbjct: 217 HNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRALCESKTPSAL 276
Query: 438 VISPLVSL---IQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492
+++P L I++Q L+ + L G + Q LR+ K++ T
Sbjct: 277 ILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQ------HVKVIIAT 330
Query: 493 PEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN-TP 551
P ++ D++ + L ++ +V+DEA + + G F+ Q L IL+ PN +
Sbjct: 331 PGRLL--DIIKQSSVELCGIKI---VVVDEADTMLKMG--FQQ--QVLDILEH-VPNDSQ 380
Query: 552 VXXXXXXXXXSVKEDVVQAL-GLVNCIIFRQ-----SFNRPNLWMDCEKVAERLQVGLSY 605
S+++ Q L V I + S + LW+ E+ A++ ++
Sbjct: 381 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWV--EEPAKKKKLFEIL 438
Query: 606 GHFFLLKEFYVVSLEC---------------GHKAAFYHGSIDPAQRAFVQKQWSKDEIN 650
L K +V ++C G K+ H +R + K + +
Sbjct: 439 NDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYE 498
Query: 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701
++ +T G G++ VR V++ +P S++ Y + GR GR GQ + + +
Sbjct: 499 VVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITF 549
Score = 37 (18.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 249 NLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTT---RTYQYETPQPAVLK 305
NL Q E L++ QL +Q + R + + F + +T YE P P ++
Sbjct: 177 NLQEDQIENLKR---QLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQ 233
Query: 306 IDPI 309
+ P+
Sbjct: 234 MIPV 237
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 92 (37.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
E+YV +L G +H ++ R V+ + ++ ++ AT +GIN P R V+
Sbjct: 1215 EWYVDALYRG--IGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMP-CRTVVF 1271
Query: 673 --HSLPKSIEGYHQECGRAGRDG 693
SL + +HQ GRAGR G
Sbjct: 1272 LGDSLQLNALNFHQAAGRAGRRG 1294
Score = 91 (37.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 35/144 (24%), Positives = 66/144 (45%)
Query: 393 SFRPN--QREIINATMSGHDVFVLMPTGGGKSLT--YQLPALICP---GITLVISPLVSL 445
+F P+ QRE ++ VFV+ PT GK+ Y + ++ G+ + ++P +L
Sbjct: 733 AFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKAL 792
Query: 446 IQDQIMHLLQANIPATFL-SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
+ +Q+ + A + +G W+ R N C+ + +T V +S +L
Sbjct: 793 V-NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQ---VLITVPHVLQSMLLQP 848
Query: 505 QLESLNARELLARIVIDEAHCVSQ 528
L + ++ RI+ DE HC+ Q
Sbjct: 849 ALANAWCPKI-RRIIFDEIHCIGQ 871
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 102 (41.0 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG + +R + + + + ++ +T + GI+ V VI++ LP +
Sbjct: 286 EANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNR 345
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRV 710
E Y GR+GR G++ + + + SD +R+
Sbjct: 346 ENYIHRIGRSGRFGRKGVAINFVT-SDDVRI 375
Score = 66 (28.3 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 42/145 (28%), Positives = 65/145 (44%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL-ICPGIT-----LVISP- 441
+G S Q I G D +G GK+ T+ + AL + + LV+SP
Sbjct: 43 YGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPT 102
Query: 442 --LVSLIQDQIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
L + IQ IM L N+ G T E +R+L DY ++ ++ TP +VA
Sbjct: 103 RELATQIQSVIMALGDYMNVQCHACIGG---TNIGEDIRKL--DYGQH-VVSGTPGRVA- 155
Query: 499 SDVLLRQLESLNARELLARIVIDEA 523
D++ R+ L R + +V+DEA
Sbjct: 156 -DMIRRR--HLRTRHI-KMLVLDEA 176
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 100 (40.3 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQW-SKDE-INIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
+ A HG D R + K++ S D INI+ AT G++ ++ VI+ P +E
Sbjct: 579 YPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHME 638
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTP 726
Y GR GR G + + + + S S V +++ S P
Sbjct: 639 DYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDP 684
Score = 77 (32.2 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLP 428
KWS P ++K F S Q + + +SG DV + TG GK+L+Y LP
Sbjct: 294 KWSHLALPTNLSSVIHDKLKFEKPS--AIQSQALPTILSGRDVIGIAKTGSGKTLSYVLP 351
Query: 429 AL 430
L
Sbjct: 352 ML 353
Score = 45 (20.9 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 240 SNELLDNATNLSP--AQTEKLRQ--ERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQ 295
S + + N TN + ++ EKLR+ E+L+L +Q + + Q E + K+ + +T
Sbjct: 14 SGQEVKNNTNQTSELSKEEKLRKRREQLELWRQKKQQQQQEQEEVQNKAKKTEDSTNNTS 73
Query: 296 YE 297
E
Sbjct: 74 TE 75
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 100 (40.3 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 623 HKAAFYHGSIDPAQRAFVQKQW-SKDE-INIICATVAFGMGINKPDVRFVIHHSLPKSIE 680
+ A HG D R + K++ S D INI+ AT G++ ++ VI+ P +E
Sbjct: 579 YPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHME 638
Query: 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTP 726
Y GR GR G + + + + S S V +++ S P
Sbjct: 639 DYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDP 684
Score = 77 (32.2 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLP 428
KWS P ++K F S Q + + +SG DV + TG GK+L+Y LP
Sbjct: 294 KWSHLALPTNLSSVIHDKLKFEKPS--AIQSQALPTILSGRDVIGIAKTGSGKTLSYVLP 351
Query: 429 AL 430
L
Sbjct: 352 ML 353
Score = 45 (20.9 bits), Expect = 0.00078, Sum P(3) = 0.00078
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 240 SNELLDNATNLSP--AQTEKLRQ--ERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQ 295
S + + N TN + ++ EKLR+ E+L+L +Q + + Q E + K+ + +T
Sbjct: 14 SGQEVKNNTNQTSELSKEEKLRKRREQLELWRQKKQQQQQEQEEVQNKAKKTEDSTNNTS 73
Query: 296 YE 297
E
Sbjct: 74 TE 75
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 112 (44.5 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
E + HG ++ R V K++ ++ +T + G++ P V VI++ LP +
Sbjct: 287 EANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNR 346
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
E Y GR+GR G++ + + D +R+ I Q + Q
Sbjct: 347 ELYIHRIGRSGRFGRKGVAINFVKQDD-VRILRDIEQYYSTQ 387
Score = 55 (24.4 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 33/133 (24%), Positives = 61/133 (45%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL------ICPGITLVISPLVSL-IQDQI 450
Q+ + A + DV +G GK+ T+ + L + L++SP L +Q Q
Sbjct: 53 QQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQK 112
Query: 451 MHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN 510
+ L + + T E +R+L DY ++ ++ TP +V D++ R+ +L
Sbjct: 113 VVLALGDYMNVQCHACIGGTNLGEDIRKL--DYGQH-VVSGTPGRVF--DMIRRR--NLR 165
Query: 511 ARELLARIVIDEA 523
R + +V+DEA
Sbjct: 166 TRAIKL-LVLDEA 177
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 108 (43.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A HG +R +V ++ + I+ AT G++ DV+FVI++ P S E
Sbjct: 365 GWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED 424
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
Y GR R + + +++ ++ +V +IS
Sbjct: 425 YIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458
Score = 64 (27.6 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
+SG D+ + TG GK+L+Y LPA++
Sbjct: 129 LSGLDMVGVAQTGSGKTLSYLLPAIV 154
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 102 (41.0 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 40/168 (23%), Positives = 63/168 (37%)
Query: 550 TPVXXXXXXXXXSVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFF 609
TP + + + AL CI Q ++ + C + V H
Sbjct: 361 TPTTSEADGQIQTTIQSLPPALKHYYCISKHQ--HKVDTLRRCVHALDAQSVIAFMNHSR 418
Query: 610 LLKEFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR 668
LK+ V LE G +A HG + R+ V K++ EI ++ G++ +
Sbjct: 419 QLKDV-VYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECD 477
Query: 669 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716
V++ LP Y GR GR G++ + V S VK M Q
Sbjct: 478 LVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQ 525
Score = 69 (29.3 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
Q + A + GHD + TG GK+L Y LP L
Sbjct: 137 QSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 116 (45.9 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 636 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 695
+R +++ + EI ++ T G G++ DV VI++ LP SI Y GR GR G+
Sbjct: 413 ERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKS 472
Query: 696 SSCVLYYSYSDFIRVKHMISQGVAEQSPF 724
V Y++ +D +K + + V QS F
Sbjct: 473 GHAVTYFTDADMKYIKSIAT--VIRQSGF 499
Score = 55 (24.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q + I +V PTG GK+L + LP +
Sbjct: 151 PIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVI 185
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 106 (42.4 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A HG + +R +V ++ K + +I+ AT GI+ + VI++ +P +IE
Sbjct: 398 GWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIED 457
Query: 682 YHQECGRAGRDGQRSSCVLYYS 703
Y GR GR G + + +++
Sbjct: 458 YVHRIGRTGRGGASGTAISFFT 479
Score = 65 (27.9 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 406 MSGHDVFVLMPTGGGKSLTYQLPALI 431
+SG D+ + TG GK+L+Y LP+++
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIV 187
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 118 (46.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 81/363 (22%), Positives = 146/363 (40%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSL---I 446
P Q E I + G D+ L TG GK+ + +P L P LV++P L I
Sbjct: 148 PIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELTFQI 207
Query: 447 QDQIMHLLQA-NIPATFLSGNMEWTEQ-QEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
+D L + + ++ + G M+ +Q ++++R K ++ TP ++ L
Sbjct: 208 KDTFDALGSSMGLRSSCIVGGMDMMDQARDLMR-------KPHVIVATPGRIMDH---LE 257
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVXXXXXXXXXSV- 563
+ + + L +V+DEA + DF P ILK P+ ++
Sbjct: 258 HTKGFSLKNL-KYLVMDEADRLLDM--DFGPALDK--ILKV----IPIKRTTYLFSATMT 308
Query: 564 -KEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGH---FFLLKEFYVVSL 619
K + +Q L N + R + + D V + V Y + LL EF S+
Sbjct: 309 NKIEKLQRASLHNPV--RVAVSSKYQTAD-NLVQSMMLVNDGYKNTILIHLLNEFMGKSI 365
Query: 620 EC------------------GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661
G A HG + +QR ++ ++ NI+ AT G
Sbjct: 366 IVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARG 425
Query: 662 INKPDVRFVIHHSLPKSIEGYHQECGR---AGRDGQRSSCVLYYSYSDFIRVKHMISQGV 718
++ P V VI++ +P + Y GR AGR G+ S + Y ++R++ ++ + +
Sbjct: 426 LDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKL 485
Query: 719 AEQ 721
++
Sbjct: 486 PKE 488
Score = 52 (23.4 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 256 EKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTTRTYQYETPQPAVLKIDP---IRFD 312
EK++Q+ LQ ++ Q +Q E+ +H ++ + T ++ IDP ++F
Sbjct: 69 EKIKQQALQKQQKQQ-----KQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKFK 123
Query: 313 T 313
T
Sbjct: 124 T 124
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 110 (43.8 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 36/153 (23%), Positives = 62/153 (40%)
Query: 615 YVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHS 674
Y L G + A HG D + R + + K+E +++ AT G++ + VI+
Sbjct: 458 YEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFD 517
Query: 675 LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVA 734
+P+ IE Y GR GR G++ + + + V + Q +AE P +
Sbjct: 518 MPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLKMLAG 577
Query: 735 NSGRVLETNTENLLRMVSYCEN----DVDCRRL 763
+ T N + +YC DC +L
Sbjct: 578 DEEGTAPAGT-NAEKGCAYCSGLGHRITDCPKL 609
Score = 62 (26.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 402 INATMSGHDVFVLMPTGGGKSLTYQLP-ALIC 432
I +SG D+ + TG GK++T+ LP + C
Sbjct: 221 IPVALSGRDMIGIASTGSGKTMTFVLPLVMFC 252
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 91 (37.1 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 22/94 (23%), Positives = 42/94 (44%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G A HG +R +V ++ + I+ AT GI+ + V ++ P + E
Sbjct: 393 GWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTED 452
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
Y GR GR G + + Y++ + + + ++S
Sbjct: 453 YVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVS 486
Score = 80 (33.2 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISP 441
K G + P Q++ MSG D+ + TG GK+L+Y LPA++ ++SP
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 116 (45.9 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 55/238 (23%), Positives = 104/238 (43%)
Query: 487 KLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPD----YQGLGI 542
+L+ TP +V D+L + L+ + V+DE C+ Q G FR +Q L
Sbjct: 238 ELIIGTPGRVV--DLLSKHTIELDN---IMTFVLDEVDCMLQRG--FRDQVMQIFQALSQ 290
Query: 543 LKQKFPNTPVXXXXXXXXXSV-KEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERL-Q 600
+ + + S+ KE ++ ++G N ++ N+ +W+D ++ ++L
Sbjct: 291 PQVLLFSATISREVEKVGGSLAKEIILVSIGNPNKP--NKAVNQLAIWVDAKQKKQKLFD 348
Query: 601 VGLSYGHFFLLKEFYV------------VSLECGHKAAFYHGSIDPAQRAFVQKQWSKDE 648
+ S HF YV +++ G KA HG +R V + E
Sbjct: 349 ILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGE 408
Query: 649 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
+ ++ +T G G++ VR VI +P +I+ Y GRA R G++ + +++ + D
Sbjct: 409 VPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
Score = 53 (23.7 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL 430
P Q + I A ++G + TG GK+ ++ +P +
Sbjct: 135 PIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1136 1075 0.00085 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 200
No. of states in DFA: 631 (67 KB)
Total size of DFA: 526 KB (2241 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 97.88u 0.10s 97.98t Elapsed: 00:00:11
Total cpu time: 97.94u 0.10s 98.04t Elapsed: 00:00:11
Start: Fri May 10 14:22:37 2013 End: Fri May 10 14:22:48 2013
WARNINGS ISSUED: 1