BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001155
(1136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1169 (60%), Positives = 834/1169 (71%), Gaps = 95/1169 (8%)
Query: 7 NFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRR-ASLQSSSDG 65
N L ++ KAW LSSL ++ Y+RPG++ P++ ND+ R A + SS+ G
Sbjct: 69 NVHTLAHPQISKAWRALSSLSVNN-TYLRPGVTPPIDVGTNDSYSARERSTAKVISSTGG 127
Query: 66 SKFSEPMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDA-GAGKGLRGQNEIKASVVANA 124
S +S N NV+ R SF S D A K RG NEI+ S +
Sbjct: 128 SVYSSTRPNLSA-----MNVSGTGRSFHSFPSSVPGDDKIVAEKFPRGNNEIRESEPSCT 182
Query: 125 HFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYHSSCTPKPSIS 183
H FGN A Q ES + + +DDD+ILE IDVDQIVMEHYHS+ TP+PS+S
Sbjct: 183 HLNGVEKSFGNSAFPAEQF-ESRKACLDDMDDDDILENIDVDQIVMEHYHSTSTPQPSVS 241
Query: 184 RLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAISNEL 243
TP ++E LPPELCS C+HG KLGLCPE S+H++ MKD+L+AISNEL
Sbjct: 242 NFSLRTPPVDRSASRLEEECNLPPELCSNCSHGIKLGLCPEASTHVEQMKDVLLAISNEL 301
Query: 244 LDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSAST-TRTYQYETPQPA 302
LD+AT+LSP + +LRQERL+L KQIQ LE + + +E QKS F +ST TR +QYETP+
Sbjct: 302 LDDATDLSPDRVGQLRQERLRLKKQIQQLENHIRDKESQKSQFLSSTATRIFQYETPKST 361
Query: 303 VLKIDPIRFDTQVHLYNESE-GYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNY 361
K+D + D + H+ ++ +WN+ S SVDR G+SS PVERE ++PKII V Y
Sbjct: 362 NYKMDQPQTDFRAHVSDQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQYVPKIIDVTY 421
Query: 362 IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGK 421
EGSND+KWSS +FPWT+KLE NNKKVFGNHSFRPNQREIINATMSG DVFVLMPTGGGK
Sbjct: 422 TEGSNDKKWSSREFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGK 481
Query: 422 SLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNS 481
SLTYQLPALIC GITLVISPLVSLIQDQIM+LLQANIPA LS MEW EQ +I +ELNS
Sbjct: 482 SLTYQLPALICGGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNS 541
Query: 482 DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541
++ KYKLLYVTPEKVAKSD LLR LE+LN+R LLAR VIDEAHCVSQWGHDFRPDYQ LG
Sbjct: 542 EHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLG 601
Query: 542 ILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------ 589
ILKQKFPN PVLALTATATASVKEDVVQALGLVNC++FRQSFNRPNLW
Sbjct: 602 ILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLE 661
Query: 590 ----------------------MDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAF 627
MDCEKV+ERLQ E GHKAAF
Sbjct: 662 DIDKFIKENHFDECGIIYCLSRMDCEKVSERLQ-------------------EFGHKAAF 702
Query: 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 687
YHGS++P QRAF+Q QWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG
Sbjct: 703 YHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 762
Query: 688 RAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENL 747
RAGRDGQRSSCVLYY Y D+IRVKHMISQG +QSP G+NR VA+SGR+LETNTENL
Sbjct: 763 RAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNR--VASSGRLLETNTENL 820
Query: 748 LRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELV 807
LRMV YCEN+V+CRR LQLVH GEKFDS +CKKTCDNC +S I+KDVT ++LVELV
Sbjct: 821 LRMVRYCENEVECRRFLQLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELV 880
Query: 808 KLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLM 867
K TG++FSS+HILEV+RGSLNQ VKKHRHETL HGAGKHL+K E SRIL +LV ED L+
Sbjct: 881 KQTGERFSSAHILEVYRGSLNQMVKKHRHETLQFHGAGKHLSKIEVSRILHYLVTEDILV 940
Query: 868 EEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLS 927
E+V+KSD+YGSVSS+L+VN +KA L G Q +V++FPS++ K SK T AKG L S
Sbjct: 941 EDVRKSDMYGSVSSLLQVNNAKATILFSGSQTIVMKFPSSVKVLKPSKQGATAAKGPLTS 1000
Query: 928 GKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLS 987
K S T P D+NLSA +Y++LR LRT LVKEA +GVMAYHIF N+TLQ +S
Sbjct: 1001 EKQSTLPLTTEDAPPK--DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQIS 1058
Query: 988 KRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGS-SSNDSNDSGKRR 1046
+R+PRT+EELLEING+GKAKVSKYG +LLETIE+T+ E+Y T+K S SNDS DSGKRR
Sbjct: 1059 RRIPRTKEELLEINGLGKAKVSKYGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRR 1118
Query: 1047 RDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEPDSYECVD------DLD 1100
RDEN +PN +DDDF S ++S K+ + NK+ EV++ EC+D +LD
Sbjct: 1119 RDENISPNV--AEDDDFEVSPSQSCKKTVR--NKSNEVLHG------ECIDGDRRGMELD 1168
Query: 1101 FDEYEYVYEMNGSTTKPDQNNGGRVLPRW 1129
FD + +GS +P+ GRVLP W
Sbjct: 1169 FD----FKDEDGSEIRPE----GRVLP-W 1188
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/1095 (57%), Positives = 759/1095 (69%), Gaps = 81/1095 (7%)
Query: 11 LHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSE 70
L ++EKAW TL +L I+ Y+RPG++ + DND++ S SS+ GS F
Sbjct: 97 LARPQIEKAWCTLINLSINN-TYLRPGITPAI---DNDST-------SRTSSTKGSTFK- 144
Query: 71 PMNNRQKGSQINFNVNEPARCTGSFHLSNNVRDAGAGKGLR-------GQNEIKASVVAN 123
+ + GS N E H +VR G K + G N+I V
Sbjct: 145 -VTSNADGSFCAHNHPE--------HSQRSVR--GTAKSIDSFSSSSVGDNKIIIDKVPR 193
Query: 124 AHFKFSDGFG----------NHTTEAGQIDESAEVLANKIDDDEILETIDVDQIVMEHYH 173
+++ D ++ + + E EV +ID D+I+E IDVDQI MEH
Sbjct: 194 VNYEVRDSVTVTNGMEMPPIKNSAQLARPVEPREVSLGEIDYDDIMEIIDVDQIAMEHCP 253
Query: 174 SSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMK 233
S+CT +PS+S+ I + R++E LPPE+CS C+HG KLGLCPE S+H++ MK
Sbjct: 254 STCTKQPSVSKFVDIFTSR------REEEQGLPPEICSNCSHGIKLGLCPEASTHVEQMK 307
Query: 234 DMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSAST-TR 292
D L+AISNE+LDN +L P E+L Q+RL L KQIQ LE +ER+KS S +
Sbjct: 308 DTLLAISNEILDNTYDLGPDHVEQLHQKRLLLKKQIQQLEILIHNKERKKSQCLVSIPSH 367
Query: 293 TYQYETPQPAVLKIDPIRFDTQVHLYNESEGY-GNWNSSSVSFSSVDRLGVSSYPVEREP 351
QYETPQ L++ + D+ H+ + NWN S +R +SS ERE
Sbjct: 368 NTQYETPQTTNLEVVYGQTDSPTHVKEQGRCVTDNWNMPRDYLVSKERYDISSGSEEREQ 427
Query: 352 FIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDV 411
+ ++I V E SND+KW+S DFPWTK LE NK VFGNHSFRPNQREIINATMSG DV
Sbjct: 428 SVSEVIDVTDTESSNDKKWTSSDFPWTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDV 487
Query: 412 FVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTE 471
FVLMPTGGGKSLTYQLPAL+C GITLVISPLVSLIQDQIM+LLQ NI A LS MEW E
Sbjct: 488 FVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAE 547
Query: 472 QQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGH 531
Q EIL+EL+S+ KYKLLYVTPEKVAKS+ LLR LE LN+R LLAR VIDEAHCVSQWGH
Sbjct: 548 QLEILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGH 607
Query: 532 DFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD 591
DFRPDYQGLG+LKQKFPN P+LALTATAT SVKEDVVQALGLVNC++FRQSFNRPNLW
Sbjct: 608 DFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYS 667
Query: 592 C----EKVAERLQVGLSYGHFFLLKEFYVVS-LEC----------GHKAAFYHGSIDPAQ 636
K E + + HF Y +S ++C GHKAAFYHGS+DP +
Sbjct: 668 VVPKTNKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGK 727
Query: 637 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 696
RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS
Sbjct: 728 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 787
Query: 697 SCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCEN 756
SCVLYYSY+D+IRVKHMISQG Q G+N A+SGR+LETNTENLLRMVSYCEN
Sbjct: 788 SCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYN--CKASSGRMLETNTENLLRMVSYCEN 845
Query: 757 DVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSS 816
+VDCRR LQLVH GEKFDS +CK TCDNCS K I+KDVT A++LV LVKLTG++FSS
Sbjct: 846 EVDCRRFLQLVHLGEKFDSTNCKNTCDNCSSSKILIDKDVTVIARQLVALVKLTGERFSS 905
Query: 817 SHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVY 876
+HI+E++RGSLNQ VK++R +TL LHGAGKHL KSEASRIL +LV ED L E VKKS++Y
Sbjct: 906 AHIVEIYRGSLNQSVKRNRQDTLHLHGAGKHLTKSEASRILHYLVTEDILAEGVKKSELY 965
Query: 877 GSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRND 936
GSVSS+LKVN+SKA +L+ G Q++ +RFPS I +K SKS PAK L L ++
Sbjct: 966 GSVSSLLKVNRSKAASLLSGGQSITMRFPSTIKVSKQSKSTANPAKVPLKQTTLPMAK-- 1023
Query: 937 TPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEE 996
+ PQ D NLS L ++L+ LRT +VKE+ + VMAYHIFGNATL+ +SKR+PRT+EE
Sbjct: 1024 --AAPQ---DSNLSGILLTALKNLRTDIVKESPDLVMAYHIFGNATLKEISKRLPRTKEE 1078
Query: 997 LLEINGIGKAKVSKYGVRLLETIESTIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNAN 1056
LL+ING+GKAKVSKYG RLLETI+STI + YKT SGKRRRDEN PN
Sbjct: 1079 LLDINGLGKAKVSKYGDRLLETIDSTINDHYKTRPG---------SGKRRRDENVNPNVA 1129
Query: 1057 KGDDDDFTKSTARSK 1071
+ DD D++ S + K
Sbjct: 1130 EDDDPDWSASQSHKK 1144
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 260/710 (36%), Positives = 400/710 (56%), Gaps = 78/710 (10%)
Query: 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI--- 431
+PW+K++ K F FR NQ E IN T+SG DVF+LMPTGGGKSL YQLPA+I
Sbjct: 501 YPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGG 560
Query: 432 -CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
G+TLVISPL+SL+QDQ+ HL + NIP+ LSG E+++++ L + KLLY
Sbjct: 561 ASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLY 620
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
VTPE +A + + R L+SL R+LLARIVIDEAHCVS WGHDFRPDY+ LG+L+ ++
Sbjct: 621 VTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGI 680
Query: 551 PVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDC---EKVAERLQVGLSYGH 607
P +ALTATA VK+D++ L + NC+ + SFNRPNL+ + + + L +S GH
Sbjct: 681 PFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGH 740
Query: 608 FFLLKEFYVVSL------------ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655
Y +S + G KA YH ++ +R +Q +W II AT
Sbjct: 741 LHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVAT 800
Query: 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
+AFGMG++K DVRFVIHHS PKS+EGY+QE GRAGRDG+ + C+++YSY D + + +I
Sbjct: 801 IAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIM 860
Query: 716 QGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDS 775
G + E + L +++ +CEN DCRR L +FGE FD
Sbjct: 861 SGDGD----------------AETKERQRQMLRQVIQFCENKTDCRRKQVLAYFGENFDK 904
Query: 776 AHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHR 835
HC+K CD C + ++I++D+T+ + + ++L+K + + ++++FRGS + + ++
Sbjct: 905 VHCRKGCDICCEEATYIKQDMTEFSLQAIKLLKSISGKATLLQLMDIFRGSKSAKIVENG 964
Query: 836 HETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSS-VLKVNQSKAHNLI 894
+ L G GK L + ++ R+ HLV E +E+V +++ G VS+ V+ Q+ ++++
Sbjct: 965 WDRLEGAGVGKLLNRGDSERLFHHLVSEGVFVEKV-EANRRGFVSAYVVPGRQTIINSVL 1023
Query: 895 IGRQNVVLRFPSA-----INSTKLSKSDVTPA------KGSLLSGKLSPSRNDT------ 937
G++ ++L + +S LS+S PA K + S S +
Sbjct: 1024 AGKRRIILDVKESSSKPDTSSRSLSRSKTLPALREYQLKSTTASVDCSIGTREVDEIYDS 1083
Query: 938 ---PSQP-----QNEVDL-NLSAKLYSS-------------LRMLRTLLVKEAGEGVMAY 975
P +P +N++DL LS + + S L++LR+ L+ V +Y
Sbjct: 1084 QMPPVKPSLIHSRNKIDLEELSGQKFMSEYEIDVMTRCLKDLKLLRSNLMAIDDSRVSSY 1143
Query: 976 HIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKE 1025
F ++ L ++K++PR +EL EI+G+ K G + L+ I+ I E
Sbjct: 1144 --FTDSVLLSMAKKLPRNVKELKEIHGVSNEKAVNLGPKFLQVIQKFIDE 1191
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/655 (40%), Positives = 367/655 (56%), Gaps = 62/655 (9%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG SFRPNQ ++INAT+ G+D FVLMPTGGGKSL YQLPA++ G+T+VISPL SLI D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
QI L +I A LSG + + I R+L S KLLYVTPEK++ S L++
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 568
LN+ ++R VIDEAHCVSQWGHDFRPDY+ LG+LK++FPN P +ALTATAT V+ D++
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDIL 912
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC--EKVAERLQVGLSY-----GHFFLLKEFYVVSL-E 620
L L NC F SFNR NL +K L Y HF + Y +S E
Sbjct: 913 AQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSGI--IYCLSRKE 970
Query: 621 C----------GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 670
C G +A YH + R QK W ++ +ICATVAFGMGI+KPDVRFV
Sbjct: 971 CDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFV 1030
Query: 671 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNR 730
+H+SLPKSIEGY+QE GRAGRDG + C+LYY+YSD +R+K M+ A Q
Sbjct: 1031 LHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQ--------- 1081
Query: 731 FNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHC----KKTCDNCS 786
+NV + + +NL R+V YCEN DCRR QL +FGE F S C + CDNC
Sbjct: 1082 YNVK------KIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNCI 1135
Query: 787 KIKSFIEKDVTDTAKKLVELVK--LTGQ-QFSSSHILEVFRGSLNQYVKKHRHETLSLHG 843
+++ D + A+K VK +G+ +F+ HI +V +GS + + H HG
Sbjct: 1136 NKRAYKAVDALEHARKAARAVKDLCSGRSRFTLLHIADVLKGSKIKKIIDFNHHKTPHHG 1195
Query: 844 AGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLR 903
K K++ R+LR +VI+ FL E++ ++ + L N SK L+ G N
Sbjct: 1196 VLKDWDKNDVHRLLRKMVIDGFLREDLIFTNDFPQAYLYLGNNISK---LMEGTPN---- 1248
Query: 904 FPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSS-LRMLRT 962
F A+ TK +K + A GS+ G S + + + + + Y+ L + RT
Sbjct: 1249 FEFAV--TKNAK-EAKAAVGSVSDGATSSTADGQSGMRE------IHERCYTDLLDLCRT 1299
Query: 963 LLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLE 1017
+ + V I L+ +++ +P TE+++ I + KA KYG +LLE
Sbjct: 1300 I---ASQRNVTMASIMNIQALKSMAETLPITEKDMCSIPHVTKANFDKYGAKLLE 1351
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 265/686 (38%), Positives = 381/686 (55%), Gaps = 80/686 (11%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ + S +FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 650 EHFQSLNFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 709
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 710 PACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIK 769
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEKV S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 770 LLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 829
Query: 548 PNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM-----DCEKVAERLQVG 602
P+ PV+ALTATA V++D++ L ++ +F SFNR NL +KVA
Sbjct: 830 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEW 889
Query: 603 LSYGHFFLLKEFYVVSL-EC----------GHKAAFYHGSIDPAQRAFVQKQW-SKDEIN 650
+ H + Y +S EC G A YH + + R VQ +W ++D
Sbjct: 890 IRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQ 949
Query: 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRV 710
+ICAT+AFGMGI+KPDVRFVIH SLPKS+EGY+QE GRAGRDG+ S CVL+Y+Y D R+
Sbjct: 950 VICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRL 1009
Query: 711 KHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFG 770
K +I + E+ + ET+ NL MV YCEN +CRR+ L +FG
Sbjct: 1010 KRLI---MMEKD------------GNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFG 1054
Query: 771 EK-FDSAHCKK----TCDNCSKIKSFIEKDVTDTAKKLVELVKL-----------TGQQF 814
EK F+ CKK +CDNC K K + KDVTD K ++ V+ +F
Sbjct: 1055 EKGFNPDFCKKYPDVSCDNCCKTKDYKTKDVTDDVKNIIRFVQEHSSSPGTRNIGPAGRF 1114
Query: 815 SSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSD 874
+ + ++++F GS + VK + G G ++ A R+ + L+++ L E++ +
Sbjct: 1115 TLNMLVDIFLGSKSAKVKS------GIFGKGTTYSRHNAERLFKKLILDKILDEDLYINA 1168
Query: 875 VYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSR 934
++ V+ +KAH+++ G V F NS+ + K AK S
Sbjct: 1169 NDQPIAYVML--GTKAHSVLSGHLKV--DFMETENSSSIKKQKALVAKVSQ--------- 1215
Query: 935 NDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTE 994
+ EV +L ++L + GV ++IF ATL+ L++ +
Sbjct: 1216 -------REEVVKKCLGELTEVCKLLGKVF------GVHYFNIFNTATLKKLAESLSSDP 1262
Query: 995 EELLEINGIGKAKVSKYGVRLLETIE 1020
E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1263 EVLLQIDGVTEDKLEKYGAEVIPVLQ 1288
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/691 (38%), Positives = 384/691 (55%), Gaps = 87/691 (12%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+++ S FP TK++ K FG H+FR NQ E INA + G D F+LMPTGGGKSL YQL
Sbjct: 642 ERFQSLSFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQL 701
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA + PG+T+VISPL SLI DQ+ L +IPAT+L+G+ +E I +L+ K
Sbjct: 702 PACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIK 761
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
LLYVTPEK+ S+ L+ LE+L R+LLAR VIDEAHCVSQWGHDFR DY+ + +L+QKF
Sbjct: 762 LLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 821
Query: 548 PNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM-----DCEKVAERLQVG 602
P+ PV+ALTATA V++D++ L ++ +F SFNR NL +KVA
Sbjct: 822 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEW 881
Query: 603 LSYGHFFLLKEFYVVSL-EC----------GHKAAFYHGSIDPAQRAFVQKQW-SKDEIN 650
+ H + Y +S EC G A YH + + R VQ++W ++D
Sbjct: 882 IRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQ 941
Query: 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRV 710
+ICAT+AFGMGI+KPDVRFVIH SLPKS+EGY+QE GRAGRDG+ S C+L+Y+Y D R+
Sbjct: 942 VICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRL 1001
Query: 711 KHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFG 770
K +I + E+ H R ET+ NL MV YCEN +CRR+ L +FG
Sbjct: 1002 KRLI---MMEKD--GNHHTR----------ETHFNNLYSMVHYCENITECRRIQLLAYFG 1046
Query: 771 EK-FDSAHCKK----TCDNCSKIKSFIEKDVTDTAKKLVELV------------KLTGQ- 812
E F+ CKK +CDNC K K + +DVTD K +V V K G
Sbjct: 1047 ENGFNPDFCKKHPDVSCDNCCKTKDYKTRDVTDDVKSIVRFVQEHSSSQGMRNIKHVGPS 1106
Query: 813 -QFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVK 871
+F+ + ++++F GS + ++ + G G ++ A R+ + L+++ L E++
Sbjct: 1107 GRFTMNMLVDIFLGSKSAKIQS------GIFGKGSAYSRHNAERLFKKLILDKILDEDLY 1160
Query: 872 KSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLS 931
+ +++ V+ N KA ++ G N+ + F NS+ + K AK S
Sbjct: 1161 INANDQAIAYVMLGN--KAQTVLNG--NLKVDFMETENSSSVKKQKALVAKVS------- 1209
Query: 932 PSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGE--GVMAYHIFGNATLQHLSKR 989
Q E + K L T + K G+ GV ++IF TL+ L++
Sbjct: 1210 ----------QRE---EMVKKCLGEL----TEVCKSLGKVFGVHYFNIFNTVTLKKLAES 1252
Query: 990 VPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ E LL+I+G+ + K+ KYG ++ ++
Sbjct: 1253 LSSDPEVLLQIDGVTEDKLEKYGAEVISVLQ 1283
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 379/698 (54%), Gaps = 89/698 (12%)
Query: 362 IEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGK 421
IE +++ ++FP +K++ K FG H FR NQ E INA + G D F+LMPTGGGK
Sbjct: 588 IENPAHERFRGFNFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGK 647
Query: 422 SLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNS 481
SL YQLP I PG+T+VISPL SLI DQ+ L +IPAT+L+G+ E I +L+
Sbjct: 648 SLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSK 707
Query: 482 DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541
KLLYVTPEKV S L+ +E+L R+LLAR VIDEAHCVSQWGHDFRPDY+ L
Sbjct: 708 KDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLN 767
Query: 542 ILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNL------------W 589
+L+QKF + P++ALTATA VK+D++ L + IF SFNR NL
Sbjct: 768 VLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVA 827
Query: 590 MDCEKVAERLQVGLSYGHFFLLKEFYVVSL-----ECGHKAAFYHGSIDPAQRAFVQKQW 644
+DC + ++ S G + L ++ + G A YH + + R +VQ +W
Sbjct: 828 LDCVEWIKKHHPNDS-GIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKW 886
Query: 645 -SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 703
++D+ +ICAT+AFGMGI+KPDVR+VIH SLPKS+EGY+QE GRAGRDG+ S C+L+YS
Sbjct: 887 INQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYS 946
Query: 704 YSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRL 763
Y D R++ +I + + +T+ NL MV YCEN V+CRR+
Sbjct: 947 YHDVTRIRRLI---------------QMEKDGNSHTKQTHFNNLYSMVHYCENVVECRRM 991
Query: 764 LQLVHFGE-KFDSAHCKK----TCDNCSKIKSFIEKDVTDTAKKLVELV----------- 807
L +FGE F+ CK+ CDNC K++ +DVTD +V V
Sbjct: 992 QLLSYFGENNFNPNFCKEHTQVACDNCLGKKNYKSRDVTDDVGNIVRFVQDNCSLVQGRG 1051
Query: 808 --KLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDF 865
+ + + + ++++F GS + ++ L G G ++ A R+ R LV++
Sbjct: 1052 KGRSNNTRLTLNMMVDIFLGSKSAKIQ------TGLFGKGAAYSRHNAERLFRKLVLDRI 1105
Query: 866 LMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLR-FPSAINSTKLSKSDVTPAKGS 924
+ EE +Y + + +Q+ A+ + R VL F S S + K S
Sbjct: 1106 IDEE-----LYITFN-----DQAVAYVKMGERAQAVLNGFLKVDFQDTESASSIRKQKAS 1155
Query: 925 LLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGE--GVMAYHIFGNAT 982
+++ + R + + Q E+ T L K G+ GV ++IF AT
Sbjct: 1156 VVTN--TSQREEMVKKCQAEL----------------TELCKRLGKIFGVHYFNIFNTAT 1197
Query: 983 LQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
++ +++ + E LL+I+G+ + K+ KYG L++ ++
Sbjct: 1198 IRRIAESLSPEPEVLLQIDGVTEDKLDKYGAELIDVLQ 1235
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/559 (41%), Positives = 331/559 (59%), Gaps = 42/559 (7%)
Query: 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI--- 431
+PW+ ++ +VF FRPNQ E +NAT+ G DVFVLMPTGGGKSL YQLPA++
Sbjct: 660 YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSG 719
Query: 432 -CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
G T+VISPL+SL+QDQ+ HLL NI A+ S ++++ + L+Y
Sbjct: 720 KTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLD--LVY 777
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
++PE ++ S+ R + L A LARIV+DEAHCVS WGHDFRPDY+ L K+++P+
Sbjct: 778 ISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDI 837
Query: 551 PVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD------------CEKVAER 598
P++ALTATA+ V+ D++ L L + +QSFNR NL+ + C+ V R
Sbjct: 838 PMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSR 897
Query: 599 L--QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655
Q G+ Y H E ++ G K A+YH ++P +R VQK W DEI +ICAT
Sbjct: 898 FKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICAT 957
Query: 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
VAFGMGI+KPDVRFV H ++P+++EGY+QE GRAGRDG S C+ Y+S+ D ++ MI
Sbjct: 958 VAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQ 1017
Query: 716 QGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDS 775
+ N+ + E + L ++++YC+N DCRR L L +F E FDS
Sbjct: 1018 KDK-------------NLDRENK--EKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDS 1062
Query: 776 AHCKKTCDNCSKIKSFI--EKDVTDTAKKLVELVK-LTGQQFSSSHILEVFRGSLNQYVK 832
C K CDNC + I E+DVT+ AKK+V+LV+ + ++ + + +VF+GS + +
Sbjct: 1063 KLCHKNCDNCRNSANVINEERDVTEPAKKIVKLVESIQNERVTIIYCQDVFKGSRSSKIV 1122
Query: 833 KHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHN 892
+ H+TL HG GK + KSE RI HL+ L +E + G SS +KV + A
Sbjct: 1123 QANHDTLEEHGIGKSMQKSEIERIFFHLITIRVL-QEYSIMNNSGFASSYVKVGPN-AKK 1180
Query: 893 LIIGRQNVVLRFP-SAINS 910
L+ G+ + ++F SA NS
Sbjct: 1181 LLTGKMEIKMQFTISAPNS 1199
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 249/668 (37%), Positives = 360/668 (53%), Gaps = 83/668 (12%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG HSFR NQ E INA + G D F+LMPTGGGKSL YQLPA + G+T+VISPL SLI D
Sbjct: 393 FGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIID 452
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+ L +I AT+L+G++ + + +L+ KLLYVTPEKV S+ LL LE+
Sbjct: 453 QVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALEN 512
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 568
L R+LLAR VIDEAHCVSQWGHDFR DY+ L +L++KF + P++ALTATA V++D+
Sbjct: 513 LYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQ 572
Query: 569 QALGLVNCIIFRQSFNRPNLWMDC-----EKVAERLQVGLSYGHFFLLKEFYVVSL-ECG 622
L ++ +F SFNR NL D +KVA + H Y +S EC
Sbjct: 573 NQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECD 632
Query: 623 HKAAF----------YHGSIDPAQRAFVQKQWSKDE-INIICATVAFGMGINKPDVRFVI 671
AA YH + + R VQK+W E +ICAT+AFGMGI+KPDVR+VI
Sbjct: 633 TTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVI 692
Query: 672 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRF 731
H SLPKS+EGY+ E GRAGRDG+ S C+L+YSYSD R++ +I S H R
Sbjct: 693 HASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNS-----HTR- 746
Query: 732 NVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEK-FDSAHCKK----TCDNCS 786
+T+ NL MV YCEN VDCRR+ L +FGE F+ CK CDNCS
Sbjct: 747 ---------QTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNCS 797
Query: 787 KIKSFIEKDVTDTAKKLVELVKL-TGQ-------------QFSSSHILEVFRGSLNQYVK 832
K + ++VTD K ++ V+ GQ +++ + ++++F G+ + K
Sbjct: 798 TKKDYKSRNVTDEVKSIIRFVQQHCGQMGGINGNRNTGSGRYTLNMMVDIFLGA--ESAK 855
Query: 833 KHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHN 892
H + G G ++ R+ R L ++ L E++ + +V+ V V KA
Sbjct: 856 IHS----GIFGKGAAYSRHNVERLFRKLFLDKILDEDLYITANDQAVAYV--VLGEKAQA 909
Query: 893 LIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAK 952
++ G V F N++ + K + K S + E+ +
Sbjct: 910 VLNGLLQV--EFHETENASAIRKQRASVTKMS----------------QREEMVKKCLGE 951
Query: 953 LYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYG 1012
L + + L + V ++IF +TL+ +++ + E LL+I+G+ + K+ KYG
Sbjct: 952 LTDTCKTLGKIF------DVHYFNIFSTSTLKKIAETLSSDAEVLLQIDGVTEDKLEKYG 1005
Query: 1013 VRLLETIE 1020
+++ ++
Sbjct: 1006 AEIIKVMD 1013
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/534 (38%), Positives = 301/534 (56%), Gaps = 46/534 (8%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TM+G +VF++MPTGGGKSL
Sbjct: 63 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
+ KL+YVTPEK+AKS + + +LE RI +DE HC SQWGHDFRPDY+ LGILK
Sbjct: 183 ELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 242
Query: 545 QKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDC-----------E 593
++FPN ++ LTATAT V D + L + C F SFNRPNL+ + E
Sbjct: 243 RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIE 302
Query: 594 KVAERL------QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSK 646
+ + + Q G+ Y E VSL+ G A YH +++P + V ++WS
Sbjct: 303 DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 362
Query: 647 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
+EI ++ ATVAFGMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD ++ C+LYY + D
Sbjct: 363 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 422
Query: 707 FIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQL 766
R+ M+ + N G+ + L MVSYC+N CRR+L
Sbjct: 423 IFRISSMVV-----------------MENVGQ------QKLYEMVSYCQNISKCRRVLMA 459
Query: 767 VHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGS 826
HF E ++S C K CDNC K +F K++T+ + L++++K + L++
Sbjct: 460 QHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSW 519
Query: 827 LNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVS 880
+ + K R + L + + +I+ H +I+ +L E+ + Y ++S
Sbjct: 520 MGKGAAKLRVAGV----VAPTLPREDLEKIIAHFLIQQYLKEDYSFT-AYATIS 568
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/534 (38%), Positives = 299/534 (55%), Gaps = 46/534 (8%)
Query: 365 SNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLT 424
S+ W+ DFPW+ K++ + VF FRP Q E IN TM+G +VF++MPTGGGK L
Sbjct: 63 SSPAAWNKEDFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLC 122
Query: 425 YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484
YQLPAL G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ +
Sbjct: 123 YQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 182
Query: 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544
+ KL+YVTPEK+AKS + + +LE RI +DE HC SQWGHDFRPDY+ LGILK
Sbjct: 183 ELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 242
Query: 545 QKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDC-----------E 593
++FPN ++ LTATAT V D + L + C F SFNRPNL+ + E
Sbjct: 243 RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIE 302
Query: 594 KVAERL------QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSK 646
+ + + Q G+ Y E VSL G A YH +++P + V ++WS
Sbjct: 303 DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSA 362
Query: 647 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
+EI ++ ATVAFGMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD ++ C+LYY + D
Sbjct: 363 NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 422
Query: 707 FIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQL 766
R+ M+ + N G+ + L MVSYC+N CRRLL
Sbjct: 423 IFRISSMVV-----------------MENVGQ------QKLYEMVSYCQNISKCRRLLMA 459
Query: 767 VHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGS 826
HF E ++S C K CDNC K +F K++T+ + L++++K + L++
Sbjct: 460 QHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSW 519
Query: 827 LNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVS 880
+ + K R + L + + +I+ H +I+ +L E+ + Y ++S
Sbjct: 520 MGKGAAKLRVAGV----VAPTLPREDLEKIIAHFLIQQYLKEDYSFT-AYATIS 568
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 244/680 (35%), Positives = 358/680 (52%), Gaps = 61/680 (8%)
Query: 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLV 438
K+L K FG + FR Q++ I +T+ GHD FVLMPTG GKSL YQLPA+I PG+T+V
Sbjct: 233 KELYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVV 292
Query: 439 ISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
+SPL SLI+DQ M + + I L+ ++ Q++I EL S KLLYVTPEK++
Sbjct: 293 VSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISA 352
Query: 499 SDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF--PNTPVLALT 556
S L L+ R LLAR VIDEAHCVSQWGHDFRPDY L L++K+ P P++ALT
Sbjct: 353 SGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALT 412
Query: 557 ATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGL----------SYG 606
ATAT + D L + N +F SF R NL D A R + + G
Sbjct: 413 ATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYPGKSG 472
Query: 607 HFFLL--KEFYVVSL---ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661
+ L KE V + + G A YH ++ R VQ+ W ++ ++ICAT+AFGMG
Sbjct: 473 IVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMG 532
Query: 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQ 721
I+KPDVRFVIH+SLPKSIEGY+QE GRAGRDG S C++ YSY D IR++ MI +G
Sbjct: 533 IDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEG---- 588
Query: 722 SPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHC--- 778
N R + N N+L++V+YCEN CRR + + HFGE +D C
Sbjct: 589 ----------NTTTGVRSMHLN--NVLQVVAYCENVSVCRRKMLVEHFGEVYDEQSCRNS 636
Query: 779 KKTCDNCSKIKSFIEK----DVTDTAKKLVELVKLTGQQFSSSHILEVFRGSL----NQY 830
K CD C + + E DV+ A +++ + Q+ + +I E++RG+L +
Sbjct: 637 KTPCDICERQRKNAEAIRLFDVSTDALSILKCLPRM-QKATLKYISELYRGALIKKSQEQ 695
Query: 831 VKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKA 890
+ H L + G+ +++ +A R +R LVIE ++ E + +
Sbjct: 696 AMRLGHTKLPFYSKGQGMSEQDALRFVRKLVIEGYIHERLYSVPNQAAAVFAYAELTEAG 755
Query: 891 HNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLS 950
+L G++ + K+ VT + +G + S + S+ Q + ++
Sbjct: 756 RDLANGKK-----------TAKVYLHIVTCERKRKNAGLIELSNMNIVSEAQALKERHMV 804
Query: 951 AKLYSSLRMLRTLL-----VKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGK 1005
R L+ L V E+ Y I ++ ++ +PRT +LL I+ + +
Sbjct: 805 KHGDVFTRCLQDLTHLITAVAESSGLSGPYSIVSREGIEQIAALLPRTNSDLLRIDSMTQ 864
Query: 1006 AKVSKYGVRLLETIESTIKE 1025
KV+KYG ++E + + K+
Sbjct: 865 IKVTKYGRLIMELLATYWKQ 884
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/534 (39%), Positives = 304/534 (56%), Gaps = 47/534 (8%)
Query: 370 WSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA 429
WS DFPW+ K++ + VF FRP Q E +NATM+ D+F++MPTGGGKSL YQLPA
Sbjct: 68 WSKEDFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPA 127
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
L G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ + KL+
Sbjct: 128 LCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLI 187
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPEK+AKS + + +LE L + +DE HC SQWGHDFRPDY+ LGILK++FPN
Sbjct: 188 YVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPN 247
Query: 550 TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDC-----------EKVAER 598
++ LTATAT V +D + L + C+ F SFNRPNL+ + E +A
Sbjct: 248 ISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANL 307
Query: 599 L------QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651
+ + G+ Y E +SL+ G +A YH +++P R V QWS +E+ +
Sbjct: 308 INGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQV 367
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVK 711
+ ATVAFGMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD R+ C+LYY + D R+
Sbjct: 368 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRIS 427
Query: 712 HMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGE 771
M+ + N G+ + L MVSYC+N CRR L HF E
Sbjct: 428 SMVV-----------------MENVGQ------QKLYEMVSYCQNISKCRRALIAQHFDE 464
Query: 772 KFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYV 831
+++ C K CDNC K SF +K++T+ + L++++K L++ + +
Sbjct: 465 VWNADACNKMCDNCCKDDSFEKKNITEHCQALIKILKQAEGLNEKLTPLKLIDAWMGKGA 524
Query: 832 KKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKV 885
K R +++ L + + +I+ H +++ +L E+ + Y ++ S LKV
Sbjct: 525 AKFRVAGVAVPA----LPREDLEKIIVHALLQQYLKEDYSFT-AYATI-SYLKV 572
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/518 (39%), Positives = 291/518 (56%), Gaps = 45/518 (8%)
Query: 370 WSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA 429
W+ DFPW K++ + VF FRP Q E IN TM+ D+F++MPTGGGKSL YQLPA
Sbjct: 68 WNKEDFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPA 127
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
L G TLVI PL+SL++DQ+M L Q I AT L+ + + + E+ + + KL+
Sbjct: 128 LCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLI 187
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPEK+AKS + + +LE L +DE HC SQWGHDFRPDY+ LGILK++FPN
Sbjct: 188 YVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPN 247
Query: 550 TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD-------CEKVAERL--- 599
++ LTATAT V +DV + L + C+ F SFNRPNL+ + E E +
Sbjct: 248 ASLMGLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKL 307
Query: 600 -------QVGLSYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651
Q G+ Y E +SL+ G A YH +++P + V QWS +E+ +
Sbjct: 308 INGRYKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQV 367
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVK 711
+ ATVAFGMGI+KPDVRFVIHHS+ KS+E Y+QE GRAGRD R+ C+LYY + D R+
Sbjct: 368 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRIS 427
Query: 712 HMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGE 771
M+ + N G+ + L MVSYC+N CRR+L HF E
Sbjct: 428 SMVV-----------------MENVGQ------QKLYEMVSYCQNVSKCRRVLIAQHFDE 464
Query: 772 KFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYV 831
+++ C K CDNC K SF +K+VT + L++++K L++ + +
Sbjct: 465 VWNADACNKMCDNCCKDVSFEKKNVTQHCRDLIKILKQAEGLNEKLTPLKLIDAWMGKGA 524
Query: 832 KKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEE 869
K R + L + + RI+ H +++ +L E+
Sbjct: 525 AKLRVAGV----VAPALPREDLERIVAHALLQQYLKED 558
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 360 bits (924), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 194/427 (45%), Positives = 256/427 (59%), Gaps = 35/427 (8%)
Query: 381 LEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVIS 440
LE N +FGN FRP Q + A+M D FVLMPTGGGKSL YQLPA + G+T+VIS
Sbjct: 194 LEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVIS 253
Query: 441 PLVSLIQDQIMHL-LQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499
PL+SLIQDQI+ L L+ IPATFL+ ++ +L+EL D KLLYVTPEK+A S
Sbjct: 254 PLLSLIQDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGS 313
Query: 500 DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATA 559
L L L+ + LLA V+DEAHCVSQWGHDFRPDY+ LG LKQ FP PV+ALTATA
Sbjct: 314 SSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATA 373
Query: 560 TASVKEDVVQALGLVNCIIFRQSFNRPNL----WMDCEKVAERLQVGL------SYGHFF 609
T SV +DV+++L + + + SF+R NL + ++ ++LQ L G +
Sbjct: 374 TESVCQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVY 433
Query: 610 LLKEFYVVSL------ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN 663
L + V + +C K +YH + QR VQ++W E+ I+CAT+AFGMGI+
Sbjct: 434 CLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGID 493
Query: 664 KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
K DVRFVIH++L K++E Y+QE GRAGRDG ++ C+ Y DF RV M+ G
Sbjct: 494 KADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGR--- 550
Query: 724 FTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKT-- 781
+RF A + +M YCE +CRR + L +FGE FD CK +
Sbjct: 551 ---NMDRFKSAMA---------QAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLN 598
Query: 782 -CDNCSK 787
CDNC +
Sbjct: 599 PCDNCER 605
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis
thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 354 bits (909), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 234/675 (34%), Positives = 340/675 (50%), Gaps = 102/675 (15%)
Query: 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL 427
+ WS F W + + VFG +R NQ+EIINA M+G DV V+M GGGKSL YQL
Sbjct: 65 ENWSE-TFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQL 123
Query: 428 PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487
PA++ G TLV+SPL+SLIQDQ+M L I A L+ ++ + + L K
Sbjct: 124 PAMLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLK 183
Query: 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547
+LYVTPEKV+KS + +LE + L+ I IDEAHC SQWGHDFRPDY+ L ILK +F
Sbjct: 184 ILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQF 243
Query: 548 PNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-----------MDCEKVA 596
P P++ALTATAT V+ D+++ L + C+ F S NRPNL+ + +++A
Sbjct: 244 PKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIA 303
Query: 597 ERLQVGLSYG-----HFFLLKEFYVVS---LECGHKAAFYHGSIDPAQRAFVQKQWSKDE 648
E ++ S + F KE ++ E G A +YH +D R V +WSK++
Sbjct: 304 EFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNK 363
Query: 649 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFI 708
+ +I TVAFGMGINKPDVRFVIHHSL KS+E Y+QE GRAGRDG S C+L++ +D
Sbjct: 364 LQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVP 423
Query: 709 RVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVH 768
R M+ E S +NL +V YC++ CRR H
Sbjct: 424 RQSSMV---FYEYSGL--------------------QNLYDIVRYCQSKTKCRRSAFFRH 460
Query: 769 FGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLN 828
FGE S C CDNC+ E DV+D +K +V +V+ T + +L++ N
Sbjct: 461 FGEP--SQDCNGMCDNCALSSEVKEVDVSDLSKLVVSMVQETQAKDQRVTMLQLGDKLRN 518
Query: 829 QYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVK----KSDVYGSVSSVLK 884
+H+ L L + E ++ L+++ L EE + ++ Y ++ +
Sbjct: 519 ------KHKDLI-----AELKRDEVEHLVIKLIVDSVLKEEFQHTPYSTNAYVTMGPL-- 565
Query: 885 VNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNE 944
A+ L+ GR+ + + ++ TK K +T S L KL R +
Sbjct: 566 -----ANQLLQGRKTI--KMETSSRQTKKLKRSIT---FSGLELKLDELRKE-------- 607
Query: 945 VDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIG 1004
+ A ++ + + + +S + P + +EL I IG
Sbjct: 608 --------------------ISAADGSILPHTVLSTQQIGSISSQKPVSLQELESI--IG 645
Query: 1005 KAKVSKYGVRLLETI 1019
K K KYG R+LE +
Sbjct: 646 KLKTEKYGDRILEEV 660
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 352 bits (902), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 195/467 (41%), Positives = 259/467 (55%), Gaps = 41/467 (8%)
Query: 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLP 428
+W FPW+ + K F FRP Q INA MS D V++ TGGGKSL YQLP
Sbjct: 62 RWDQDSFPWSDEANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLP 121
Query: 429 ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488
AL+ G+TLVISPLVSL++DQIM L + I A L+ N E + + + + + +L
Sbjct: 122 ALLAKGLTLVISPLVSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRL 181
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
LYVTPEK+AKS ++ QLE L I IDE HC SQWGHDFR DY L +LK++F
Sbjct: 182 LYVTPEKLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFK 241
Query: 549 NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM----------DC-EKVAE 597
P+L LTATAT++V +DV + LG+ I+FR FNR NL +C EK+
Sbjct: 242 GVPILGLTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVR 301
Query: 598 RLQVGLS--YGHFFLLK----EFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEIN 650
++ S G + L E SL+ G +A YH ++P R+ ++W EI
Sbjct: 302 TIKRKFSGKTGIIYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQ 361
Query: 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRV 710
+I ATVAFGMGI+KPDVRFVIHHSLPKSIE Y+QE GRAGRDG ++C+LYY SD +
Sbjct: 362 VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQ 421
Query: 711 KHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFG 770
MI Q +T NL MV Y + V CRR+ HF
Sbjct: 422 SSMIQQE-----------------------QTGIANLYNMVRYASDTVTCRRVKLAEHFE 458
Query: 771 EKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSS 817
E ++ + C+K CD C K + D +K+ V ++ + + SS+
Sbjct: 459 EAWEPSWCQKQCDVCEKSSNSPGTATEDVSKEAVVVINIIEENLSSA 505
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 220/649 (33%), Positives = 349/649 (53%), Gaps = 82/649 (12%)
Query: 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447
VFG SFR Q E+I+AT+ G D V+M TG GKSL YQ+PAL G+TLVISPL+SL++
Sbjct: 33 VFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLISLMK 92
Query: 448 DQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
DQ+ LL I A +L+ + +TEQQ++ +L S KLLYV+PEKV +
Sbjct: 93 DQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSG--TLKLLYVSPEKVMTTSFF----- 145
Query: 508 SLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDV 567
L + ++ + IDEAHC+SQWGHDFRP+Y LG LK FP+ P++ALTATA + ++D+
Sbjct: 146 HLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQDI 205
Query: 568 VQALGLVNCIIFRQSFNRPNL-WMDCEK-----------VAERLQVGLSYGHFFLLKEFY 615
++ L L + ++ SF+RPN+ + EK + ++ + G+ Y + E
Sbjct: 206 LRHLNLQSPHVYIGSFDRPNIRYTLVEKFKPMEQLCRFVLGQKGKSGIIYCNSRSKVERI 265
Query: 616 VVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHS 674
SL G A YH ++ +QR VQ+ + +D + ++ AT+AFGMGINK +VRFV+H
Sbjct: 266 AESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVVHFD 325
Query: 675 LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHN--RFN 732
LP+SIE Y+QE GRAGRD + VL+Y +D+ + ++ + P +P
Sbjct: 326 LPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILL-----EKPESPQRQIEALK 380
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSK-IKSF 791
+ G E+ T CRRL+ L +FGE H +K C NC +
Sbjct: 381 LQAIGEFAESQT---------------CRRLVLLNYFGE-----HQQKPCQNCDICLDPP 420
Query: 792 IEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKS 851
+ D A+K++ + GQ+F +++ V RG NQ +K ++HE LS++G GK +K
Sbjct: 421 KQYDGLIDAQKVMSTIYRIGQRFGVHYVIAVLRGLSNQKIKDNQHEQLSVYGIGKDKSKE 480
Query: 852 EASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINST 911
++R L+ F+ + V+ ++ L++ ++ A ++ G Q + L P
Sbjct: 481 HWQSVIRQLIHLGFIKQ------VFDHFNATLQLTEN-AKPILRGEQPLSLAMP------ 527
Query: 912 KLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEG 971
+ S L+ ++P R ++ L++ LR LR + + E
Sbjct: 528 ----------RISSLTSVVAPQRYAIAQYDKD---------LFARLRFLRKQIADK--EN 566
Query: 972 VMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ AY +F +ATLQ +++ P T+ E+L ING+G K ++ ++ I+
Sbjct: 567 IPAYIVFNDATLQEMAQYQPTTKAEMLAINGVGATKFERFAQPFMQIIQ 615
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 341 bits (874), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/464 (40%), Positives = 258/464 (55%), Gaps = 47/464 (10%)
Query: 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLP 428
+W FPW+ + K+ F FRP QR INA MS D V++ TGGGKSL YQLP
Sbjct: 85 RWDRDGFPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLP 144
Query: 429 ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488
AL+ G+ LV+SPL+SL++DQI+ L I ++ L+ N E + + + + K++L
Sbjct: 145 ALLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRL 204
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
LYVTPEK+AKS ++ +LE + L I IDE HC SQWGHDFR DY L +LK++F
Sbjct: 205 LYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFK 264
Query: 549 NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM----------DC-EKVAE 597
P+L LTATAT++V +DV LG+ + FR FNR NL +C E++A+
Sbjct: 265 GVPILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAK 324
Query: 598 RL------QVGLSYGHFFLLKEFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEIN 650
+ Q G+ Y E +L+ G KA YH ++P R+ + W +I
Sbjct: 325 TIKRDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQ 384
Query: 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRV 710
+I ATVAFGMGI+KP+VRFVIHHSLPKSIE Y+QE GRAGRDGQ ++C+LYY +D +
Sbjct: 385 VIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQ 444
Query: 711 KHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFG 770
M+ Q T +NL MV Y + CRR+ HF
Sbjct: 445 SSMVQQE-----------------------RTGIQNLYNMVRYAADSSTCRRVKLAEHFE 481
Query: 771 EKFDSAHCKKTCDNCSKIKSFI------EKDVTDTAKKLVELVK 808
E ++ + C+K CD C F+ DV++ AK V +++
Sbjct: 482 EAWEPSWCQKQCDTCENGNGFVGTSSKESTDVSEAAKTTVRIIE 525
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 223/651 (34%), Positives = 345/651 (52%), Gaps = 81/651 (12%)
Query: 386 KKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSL 445
K VFG SFR Q E+INA ++G D V+M TG GKSL YQ+PAL G+TLVISPL+SL
Sbjct: 21 KSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL 80
Query: 446 IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
++DQ+ L I A FL+ + +QQ++ +L S + KLLYV+PEKV + Q
Sbjct: 81 MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISG--QLKLLYVSPEKVMTNSFF--Q 136
Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKE 565
L S + + I IDEAHC+SQWGHDFRP+Y LG LK FP+ P++ALTATA + ++
Sbjct: 137 LISYSK---VCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQ 193
Query: 566 DVVQALGLVNCIIFRQSFNRPNLWMDCEK------------VAERLQVGLSYGHFFLLKE 613
D+++ L L N + SF+RPN+ E+ +A++ + G+ Y + E
Sbjct: 194 DILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGKSGIIYCNSRNKVE 253
Query: 614 FYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
SL G AA YH ++ A R VQ+ + +D + ++ AT+AFGMGINK +VRFV H
Sbjct: 254 RIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAH 313
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHN--R 730
LP+SIE Y+QE GRAGRD + VL+Y +D+ + Q + + P TP +
Sbjct: 314 FDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWL-----QKILLEKPETPQRQIEQ 368
Query: 731 FNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKS 790
+ G E+ T CRRL+ L +FGE H + C+NC
Sbjct: 369 HKLEAIGEFAESQT---------------CRRLVLLNYFGE-----HRQTPCNNCDICLD 408
Query: 791 FIEK-DVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLA 849
+K D A+K++ + GQ F + +++ V RG NQ + + +H LS++G GK +
Sbjct: 409 PPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIIERQHHKLSVYGIGKDKS 468
Query: 850 KSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAIN 909
K ++R L+ F+ + V ++ L++ +S A ++ G + + L P
Sbjct: 469 KEHWQSVIRQLIHLGFVQQ------VISELNPTLQLTES-AKVILKGEEPLELAMPRISA 521
Query: 910 STKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAG 969
+K++ + PQ + N L++ LR LR + +
Sbjct: 522 ISKIAHN------------------------PQRQGVANYDKDLFARLRFLRKQIADK-- 555
Query: 970 EGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
E + Y +F +ATLQ +++ +P + E+L+ING+G K+ ++G + I+
Sbjct: 556 ENIPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQ 606
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 213/661 (32%), Positives = 346/661 (52%), Gaps = 84/661 (12%)
Query: 381 LEANNKKV----FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGIT 436
LE+ K+V FG FRP Q II+ +SG D V+MPTGGGKSL YQ+PAL+ G+T
Sbjct: 9 LESGAKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLT 68
Query: 437 LVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496
+V+SPL+SL++DQ+ LL + A L+ +Q E++ + + +LLY+ PE++
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTG--QIRLLYIAPERL 126
Query: 497 AKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALT 556
D L L N + +DEAHC+SQWGHDFRP+Y LG L+Q+FP P +ALT
Sbjct: 127 M-LDNFLDHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALT 181
Query: 557 ATATASVKEDVVQALGLVNCIIFRQSFNRPNL-WMDCEKVA-----------ERLQVGLS 604
ATA + ++D+++ LGL + +I SF+RPN+ +M EK +R + G+
Sbjct: 182 ATADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGII 241
Query: 605 YGHFFLLKEFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN 663
Y + E L+ G AA YH ++ A R VQ+++ +D++ I+ ATVAFGMGIN
Sbjct: 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGIN 301
Query: 664 KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
KP+VRFV+H +P++IE Y+QE GRAGRDG + +L+Y +D ++ + E+ P
Sbjct: 302 KPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL-----EEKP 356
Query: 724 FTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCD 783
+G++ + L M ++ E CRRL+ L +FGE ++ C
Sbjct: 357 ------------AGQLQDIERHKLNAMGAFAEAQT-CRRLVLLNYFGEGR-----QEPCG 398
Query: 784 NCSK-IKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLH 842
NC + + D + A+ + + Q+F +++EV RG+ NQ ++ H+ L ++
Sbjct: 399 NCDICLDPPKQYDGLNDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDFGHDKLKVY 458
Query: 843 GAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVL 902
G G+ + ++R L+ +M+ + + S L++ + L R +V L
Sbjct: 459 GMGREKSHEHWVSVIRQLIHLGLVMQNIAQ-------HSALQLTDAARPVL---RGDVPL 508
Query: 903 RFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRT 962
KL+ + K P Q N KL++ LR LR
Sbjct: 509 ---------KLAVPRIVALK---------------PRVMQKSFGGNYDRKLFAKLRKLRK 544
Query: 963 LLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIEST 1022
+ E E + Y +F +ATL +++++P + E+L +NG+G K+ ++G + I +
Sbjct: 545 AIADE--ENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIRAH 602
Query: 1023 I 1023
+
Sbjct: 603 V 603
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 211/661 (31%), Positives = 345/661 (52%), Gaps = 84/661 (12%)
Query: 381 LEANNKKV----FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGIT 436
LE+ K+V FG FRP Q EII+ +SG D V+MPTGGGKSL YQ+PAL+ G+T
Sbjct: 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLT 68
Query: 437 LVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496
+V+SPL+SL++DQ+ L + A L+ +Q E++ + + +LLY+ PE++
Sbjct: 69 VVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPERL 126
Query: 497 AKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALT 556
D L L N + +DEAHC+SQWGHDFRP+Y LG L+Q+FP P +ALT
Sbjct: 127 M-LDNFLEHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALT 181
Query: 557 ATATASVKEDVVQALGLVNCIIFRQSFNRPNL-WMDCEKVA-----------ERLQVGLS 604
ATA + ++D+V+ LGL + +I SF+RPN+ +M EK +R + G+
Sbjct: 182 ATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGII 241
Query: 605 YGHFFLLKEFYVVSLEC-GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN 663
Y + E L+ G AA YH ++ RA VQ+++ +D++ I+ ATVAFGMGIN
Sbjct: 242 YCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN 301
Query: 664 KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSP 723
KP+VRFV+H +P++IE Y+QE GRAGRDG + +L+Y +D ++ + E+ P
Sbjct: 302 KPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL-----EEKP 356
Query: 724 FTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCD 783
G++ + L M ++ E CRRL+ L +FGE ++ C
Sbjct: 357 ------------QGQLQDIERHKLNAMGAFAEAQT-CRRLVLLNYFGEGR-----QEPCG 398
Query: 784 NCSK-IKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLH 842
NC + + D + A+ + + Q+F +++EV RG+ NQ ++ + H+ L ++
Sbjct: 399 NCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVY 458
Query: 843 GAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVL 902
G G+ + ++R L+ + + + + S L++ ++ A ++ G ++ L
Sbjct: 459 GMGRDKSHEHWVSVIRQLIHLGLVTQNIAQ-------HSALQLTEA-ARPVLRGESSLQL 510
Query: 903 RFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRT 962
P + P Q N KL++ LR LR
Sbjct: 511 AVPRIVAL--------------------------KPKAMQKSFGGNYDRKLFAKLRKLRK 544
Query: 963 LLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIEST 1022
+ E+ V Y +F +ATL +++++P T E+L +NG+G K+ ++G + I +
Sbjct: 545 SIADES--NVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAH 602
Query: 1023 I 1023
+
Sbjct: 603 V 603
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 175/450 (38%), Positives = 243/450 (54%), Gaps = 45/450 (10%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 448
FG+ FR Q E I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 32 FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLIALMEN 91
Query: 449 QIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508
Q+M L + I A +LS + +I +L+S +LLYVTPE +A +L+ L
Sbjct: 92 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLK-LRK 150
Query: 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 568
L++R LL I IDEAHC+S WGHDFRP Y+ L L+ + PVLALTATA V++DV+
Sbjct: 151 LHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVI 210
Query: 569 QALGLVNCIIFRQSFNRPNLWMDCE----------KVAERLQ-VGLSYGHFFLLKEFYVV 617
+L L N ++ + SFNRPN++ + + L+ G + L+
Sbjct: 211 DSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCD 270
Query: 618 SLEC-----GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
L G +A YH ++ R+ V W + II ATVAFGMGI+K DVR V H
Sbjct: 271 DLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCH 330
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI--SQGVAEQSPFTPGHNR 730
++PKS+E ++QE GRAGRD S VLYY D ++++++ S+ S P
Sbjct: 331 FNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKP---- 386
Query: 731 FNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKS 790
T + ++V+YCE CRR L FGE+F CKKTCD C
Sbjct: 387 -------------TSDFEQIVTYCEGS-GCRRKKILESFGEEFPVQQCKKTCDAC----- 427
Query: 791 FIEKDVTDTAKKLVELVKLTGQQFSSSHIL 820
K A L EL+ ++ +SS I
Sbjct: 428 ---KHPNQVAHCLEELMTTASRRHNSSRIF 454
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 293 bits (751), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 254/445 (57%), Gaps = 46/445 (10%)
Query: 371 SSWDFPWTKKLEANNKKVFGNHSFR-PNQREIINATMSGH-DVFVLMPTGGGKSLTYQLP 428
+++ F +++ + KKVFG SF+ P Q A + G+ DVFV MPTG GKSL YQLP
Sbjct: 6 TTFPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLP 65
Query: 429 ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488
AL+ GIT+V+SPL++LIQDQ+ HLL + + L+ + E++E+L +L + + K+
Sbjct: 66 ALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKI 125
Query: 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 548
LY+TPE +A S L SL +R LL+ +V+DEAHCVSQWGHDFRPDY LG L+ +
Sbjct: 126 LYITPE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG 184
Query: 549 NTPVLALTATATASVKEDVVQALGLVNCI-IFRQSFNRPNLWMDCEKVAERLQVGLSYGH 607
+ P +ALTATAT V+EDV AL L + IF+ R NL+ D V + + YG+
Sbjct: 185 HAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYD---VQFKELISDPYGN 241
Query: 608 F--FLLK------------------------EFYVVSLEC-GHKAAFYHGSIDPAQRAFV 640
F LK E + L C G A YH + ++R V
Sbjct: 242 LKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLV 301
Query: 641 QKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVL 700
Q W ++++ +I AT++FGMG++K +VRFV H ++ KS+ GY+QE GRAGRDG+ S C L
Sbjct: 302 QNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRL 361
Query: 701 YYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDC 760
YYS +D +V +I + VA+ R N A+ + +V++CE ++ C
Sbjct: 362 YYSRNDRDQVSFLIRKEVAKLQ-----EKRGNKASD----KATIMAFDALVTFCE-ELGC 411
Query: 761 RRLLQLVHFGEKFDSAHCKKTCDNC 785
R +FG+ + C K CD+C
Sbjct: 412 RHAAIAKYFGDALPA--CAKGCDHC 434
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain
168) GN=recQ PE=3 SV=1
Length = 591
Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 206/649 (31%), Positives = 329/649 (50%), Gaps = 92/649 (14%)
Query: 389 FGNHSFRPNQREIIN-ATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447
FG FR Q E I T + + +MPTGGGKS+ YQ+PAL+ G T+VISPL+SL++
Sbjct: 13 FGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMK 72
Query: 448 DQIMHLLQANIPATFLSGNMEWTEQQEILRELNS-DYCKYKLLYVTPEKVAKSDVLLRQL 506
DQ+ L +A I A +++ QEI LN YKL Y+TPE++ + +R L
Sbjct: 73 DQVDALEEAGINAAYINST---QSNQEIYERLNGLKEGAYKLFYITPERLTSIE-FIRIL 128
Query: 507 ESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPV-LALTATATASVKE 565
+ ++ + + IDEAHC+SQWGHDFRP Y+ + IL ++ + PV +ALTATAT V +
Sbjct: 129 QGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHD 184
Query: 566 DVVQALGLVNCIIFRQSFNRPNL------------WMDCEKVAERLQVGLSYGHFFLLKE 613
D+ + L + F+R NL ++D R + G+ Y +
Sbjct: 185 DICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATRKEAD 244
Query: 614 FYVVSLECGH-KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672
L+ +A YHG + R Q+++ DE+ ++ AT AFGMGI+K ++RFV+H
Sbjct: 245 RIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLH 304
Query: 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFN 732
+PK +E Y+QE GRAGRDG S CVL +S D + + +I Q E+
Sbjct: 305 AQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQ--------- 355
Query: 733 VANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFI 792
+ + + L +MV YC + DC + L++FGEK A C + C NC+ ++
Sbjct: 356 --------KQDLKKLRQMVDYCHTE-DCLQRFILMYFGEKEPDA-CGQ-CGNCTDTRA-- 402
Query: 793 EKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSE 852
DVT A+ ++ + ++F + + +V GS N+ V ++ LS +G KH + E
Sbjct: 403 AHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGE 462
Query: 853 ASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTK 912
S + L+ +DF ++ SD G+ FP+ S+K
Sbjct: 463 ISDFIEFLISDDF----IRMSD--GT-------------------------FPTLFVSSK 491
Query: 913 LSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGV 972
++L G+LS +R + + + +L+ LRM+R + E +GV
Sbjct: 492 ---------GRNVLKGELSVARKEALKAAA----ITENDELFERLRMVRKEIAAE--QGV 536
Query: 973 MAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIES 1021
+ +F + TL+ +S + P ++ELL I G+G+ K +KYG L+ I++
Sbjct: 537 PPFVVFSDQTLKEMSGKQPVNDDELLSIKGVGEQKRAKYGRLFLQEIQA 585
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 217/732 (29%), Positives = 344/732 (46%), Gaps = 134/732 (18%)
Query: 386 KKVFGNHSFRPNQREIINATM-SGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+ SF+P Q +++++ + D V+M TG GKSL YQ + GI +VI PL+S
Sbjct: 482 KTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLIS 541
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQ++ L +NI + FL + + +L+++ K +++Y+TPE ++ LL+
Sbjct: 542 LMEDQVLQLEMSNISSCFLGS----AQSKNVLQDVKDG--KMRVIYMTPEFCSRGISLLQ 595
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVK 564
L++ R + I IDEAHC+S+WGHDFR Y+ LG LK+ PN P++ALTATA+ S++
Sbjct: 596 DLDN---RYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIR 652
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLK------------ 612
ED+ ++L L N + SF+RPNL++D + + + L FL+K
Sbjct: 653 EDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQ---FLIKKQQGSGWEFEGA 709
Query: 613 ----------------EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV 656
E + + CG YH + QR V ++ +DEI+ + ATV
Sbjct: 710 TIVYCPTRKTSEQVTAELIKLGIACGT----YHAGMGIKQRREVHHRFMRDEIHCVVATV 765
Query: 657 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716
AFGMGINKPD+R VIH+ PK +E Y+QE GRAGRDG S C ++ +D +HM+ +
Sbjct: 766 AFGMGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGE 825
Query: 717 GVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEK---- 772
+ N G E + L +M Y N CRR + L HF +K
Sbjct: 826 ----------------IPNKG-FREYKLKMLTKMEKYL-NSSTCRRKIILSHFEDKQLRK 867
Query: 773 --FDSAHCKKTCDNCSKIKSFIEKDVTDT----------AKKLVELVKLTGQQFSSSHIL 820
+K CDNC K + + DT A K + V + GQ+F + +
Sbjct: 868 ASSGIMGTEKCCDNC-KTRLICNISINDTEDNLQDFGPQAYKFISAVDVLGQKFGTGVPV 926
Query: 821 EVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLME---EVKKSDVYG 877
RGS +Q V R SL +GK ++ + R L+ E +L E + K S + G
Sbjct: 927 LFLRGSTSQRV-PDRFRNHSLFSSGKDQTEAFWKVLARQLITEGYLQESSGQTKFSTICG 985
Query: 878 SVSS----VLKVNQSKAHNLIIGRQNVVL-----------------RFPSAINSTKLSKS 916
S ++K N + +L++ N + P A ++T+ S
Sbjct: 986 LTSKGSNWLIKANNEQCPSLLLPSNNELCLQRTRVSNFSSAQAHSSMVPHASSNTRSSMP 1045
Query: 917 DVTPAKGSLL--------------------SGKL-SPSRNDTPSQPQ-NEVDLNLSAKLY 954
P K L S KL +P + P +P+ + + L LY
Sbjct: 1046 KAGPEKMELKDKFSYQEAERLSKAAGVSKSSFKLQTPCKLSRPPEPEVSPRERELQTTLY 1105
Query: 955 SSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVR 1014
L + R + E ++ + N L ++K P T E + +++G+ +AK +
Sbjct: 1106 GRLVVARQKIASE--RDILPAVLATNKVLVDMAKLRPTTSENMKKLDGVSEAKSA----- 1158
Query: 1015 LLETIESTIKEF 1026
+L + +KEF
Sbjct: 1159 MLAPLLEVVKEF 1170
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 204/629 (32%), Positives = 320/629 (50%), Gaps = 90/629 (14%)
Query: 374 DFPWTKKLEANN---KKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPA 429
DF W E K FG+ SF+P Q ++I++ + D +M TG GKSL +Q P
Sbjct: 526 DFLWPAPNEEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPP 585
Query: 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489
+ I LVISPL+SL++DQ++ L +NIPA FL + + +L ++ KY+++
Sbjct: 586 VYVGKIGLVISPLISLMEDQVLQLKMSNIPACFLGS----AQSENVLTDIK--LGKYRIV 639
Query: 490 YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549
YVTPE + + LL+QLE+ L+A +DEAHC+S+WGHDFR ++ LG LK P
Sbjct: 640 YVTPEYCSGNMGLLQQLEADIGITLIA---VDEAHCISEWGHDFRDSFRKLGSLKTALPM 696
Query: 550 TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEK----VAERLQVGL-- 603
P++ALTATA++S++ED+V+ L L N I F+RPNL+++ + + + LQ L
Sbjct: 697 VPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVK 756
Query: 604 --SYGHFF---------------LLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSK 646
S+ F + E ++L CG YH + + R + ++ +
Sbjct: 757 TSSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGT----YHAGMSFSTRKDIHHRFVR 812
Query: 647 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
DEI + AT+AFGMGINK D+R VIH+ PK +E Y+QE GRAGRDG +SSC + ++ +D
Sbjct: 813 DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPAD 872
Query: 707 FIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVD---CRRL 763
+H++++ E +F + L+M++ E + CRR
Sbjct: 873 INLNRHLLTEIRNE---------KFRLYK------------LKMMAKMEKYLHSSRCRRQ 911
Query: 764 LQLVHFGEK------FDSAHCKKTCDNC-SKIK-SFIEKDVTDT-------AKKLVELVK 808
+ L HF +K +K CDNC S++ + D DT A KL+ V
Sbjct: 912 IILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCYSMDDSEDTSWDFGPQAFKLLSAVD 971
Query: 809 LTGQQFSSSHILEVFRGSLNQYV--KKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFL 866
+ G++F + RGS +Q + + RH SL G GK +S R L+ E FL
Sbjct: 972 ILGEKFGIGLPILFLRGSNSQRLADQYRRH---SLFGTGKDQTESWWKAFSRQLITEGFL 1028
Query: 867 MEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLL 926
+ EV + + + + ++ K ++ H Q+++L+ + KL + P+ ++
Sbjct: 1029 V-EVSRYNKFMKICALTKKGRNWLHKANTESQSLILQANEELCPKKL----LLPSSKTVS 1083
Query: 927 SGKLSPSRNDTPSQPQNEVDLNLSAKLYS 955
SG N P + E NL KLYS
Sbjct: 1084 SGTKEHCYNQVPVELSTEKKSNLE-KLYS 1111
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn
PE=1 SV=3
Length = 1401
Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 222/765 (29%), Positives = 355/765 (46%), Gaps = 143/765 (18%)
Query: 386 KKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVS 444
K FG+ SF+P Q ++I++ + D V+M TG GKSL +Q P + I +VISPL+S
Sbjct: 505 KTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLIS 564
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR 504
L++DQ++ L +N+PA L + + IL ++ KY+++Y+TPE + + LL+
Sbjct: 565 LMEDQVLQLELSNVPACLLGS----AQSKNILGDVK--LGKYRVIYITPEFCSGNLDLLQ 618
Query: 505 QLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVK 564
QL+S L+A +DEAHC+S+WGHDFR ++ LG LK P PV+AL+ATA++S++
Sbjct: 619 QLDSSIGITLIA---VDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIR 675
Query: 565 EDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL-LKEFYV------- 616
ED++ L L + I F+RPNL+ L+VG G+ LK F V
Sbjct: 676 EDIISCLNLKDPQITCTGFDRPNLY---------LEVGRKTGNILQDLKPFLVRKASSAW 726
Query: 617 ------------------VSLECGH---KAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655
V+ E G YH + ++R V ++ +DEI + AT
Sbjct: 727 EFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVAT 786
Query: 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715
VAFGMGINK D+R VIH+ PK +E Y+QE GRAGRDG +SSC L ++ +DF ++++
Sbjct: 787 VAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLI 846
Query: 716 QGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEK--- 772
+ E +F + + +++M Y + CRR + L HF +K
Sbjct: 847 EIHDE---------KFRL--------YKLKMMVKMEKYLHSS-QCRRRIILSHFEDKCLQ 888
Query: 773 ---FDSAHCKKTCDNC---------SKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHIL 820
D +K CDNC + +D A +L+ V + ++F +
Sbjct: 889 KASLDIMGTEKCCDNCRPRLNHCLTANNSEDASQDFGPQAFQLLSAVDILQEKFGIGIPI 948
Query: 821 EVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVS 880
RGS +Q + ++ L GAGK A+S + HL+ E FL+ EV K + Y
Sbjct: 949 LFLRGSNSQRL-PDKYRGHRLFGAGKEQAESWWKTLSHHLIAEGFLV-EVPKENKYIKTC 1006
Query: 881 SVLK---------VNQSKAHNLIIGRQNVVLRF---------------------PSAINS 910
S+ K +QS L+ + + R P+ + +
Sbjct: 1007 SLTKKGRKWLGEASSQSPPSLLLQANEEMFPRKVLLPSSNPVSPETTQHSSNQNPAGLTT 1066
Query: 911 T--------------KLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQ-NEVDLNLSAKLYS 955
K+S P K +++ SP + +P +P + +L+ LY+
Sbjct: 1067 KQSNLERTHSYKVPEKVSSGTNIPKKSAVMP---SPGTSSSPLEPAISAQELDARTGLYA 1123
Query: 956 SLRMLRTLLVKEAGEGVMAYHIFG-NATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVR 1014
L R K A + + I N L ++K P T E + +I+G+ + K +
Sbjct: 1124 RLVEARQ---KHANKMDVPPAILATNKVLLDMAKMRPTTVENMKQIDGVSEGKAA----- 1175
Query: 1015 LLETIESTIKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGD 1059
LL + IK F + S D S K +++ ++ K D
Sbjct: 1176 LLAPLLEVIKHFCQVT---SVQTDLLSSAKPHKEQEKSQEMEKKD 1217
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 212/725 (29%), Positives = 337/725 (46%), Gaps = 94/725 (12%)
Query: 359 VNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTG 418
V I+ + KW+S P + L A N+ FG+ FR Q +++ + G D FVLM TG
Sbjct: 194 VPQIDEATKMKWASMTSPPQEALNALNE-FFGHKGFREKQWDVVRNVLGGKDQFVLMSTG 252
Query: 419 GGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRE 478
GKS+ YQLP+L+ +T+V+SPL+SL+ DQ+ L+ I A L G+ E ++
Sbjct: 253 YGKSVCYQLPSLLLNSMTVVVSPLISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANN 312
Query: 479 LNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA-RELLARIVIDEAHCVSQWGHDFRPDY 537
++ + + +Y++PE V + LE L + R+ ++ + IDEAHCVSQWGHDFR Y
Sbjct: 313 MH----RIRFIYMSPEMVTSQ----KGLELLTSCRKHISLLAIDEAHCVSQWGHDFRNSY 364
Query: 538 QGLGILKQK--FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDC--- 592
+ L ++ + N P++ALTATAT V++DV+ L L +I SF+R NL++
Sbjct: 365 RHLAEIRNRSDLCNIPMIALTATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVHSS 424
Query: 593 EKVAERLQVGLSY----GHFF------------LLKEFYVVSLECGHKAAFYHGSIDPAQ 636
+ +AE L + + G F ++ + V G ++A YH + Q
Sbjct: 425 KDMAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQ 484
Query: 637 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 696
R + +D+I I ATVAFGMGI+KPDVR VIH+ P +IE Y+QE GRAGRDG S
Sbjct: 485 REKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPS 544
Query: 697 SCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLET--NTENLLRMVSYC 754
C ++++ D +K F + NS + E N +LR +
Sbjct: 545 ICRVFWAPKDLNTIK-------------------FKLRNSQQKEEVVENLTMMLRQLELV 585
Query: 755 ENDVDCRRLLQLVHFGEKFDS-----AHCKKTCDNCSKI------KSFIEKDVTDTAKKL 803
V CRR L HF + A C CD C+++ S DVT +K L
Sbjct: 586 LTTVGCRRYQLLKHFDPSYAKPPTMQADC---CDRCTEMLNGNQDSSSSIVDVTTESKWL 642
Query: 804 VELV-KLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVI 862
+++ ++ + +E RGS + + L G GKH+ + L I
Sbjct: 643 FQVINEMYNGKTGIGKPIEFLRGSSKEDWRIKTTSQQKLFGIGKHIPDKWWKALAASLRI 702
Query: 863 EDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTK---------- 912
+L E +GS ++ ++ + L+ G++ + P + K
Sbjct: 703 AGYLGEVRLMQMKFGSCITLSELGE---RWLLTGKEMKIDATPILLQGKKEKAAPSTVPG 759
Query: 913 LSKSDVTPAKGSLLSGKLSPS--RNDTPSQPQNEVDLNLSAK----LYSSLRMLRTLL-- 964
S+S T + + + L + R P+ +NE +NL + L + LR+ L
Sbjct: 760 ASRSQSTKSSTEIPTKILGANKIREYEPAN-ENEQLMNLKKQEVTGLPEKIDQLRSRLDD 818
Query: 965 ----VKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020
+ E V + I N L + P + L I+G+ + S+YG R ++ +
Sbjct: 819 IRVGIANMHE-VAPFQIVSNTVLDCFANLRPTSASNLEMIDGMSAQQKSRYGKRFVDCVV 877
Query: 1021 STIKE 1025
KE
Sbjct: 878 QFSKE 882
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 249 bits (637), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 167/511 (32%), Positives = 263/511 (51%), Gaps = 70/511 (13%)
Query: 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447
V+G +FRP Q EIIN ++G DV ++ T GKSL +Q+PAL ++ISPL+SL++
Sbjct: 24 VYGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLME 83
Query: 448 DQIMHLLQANIPATFLSGNMEWTEQ--QEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ 505
DQ + L + I + + N+E Q ++I++ KYK +YV+PE V L+ +
Sbjct: 84 DQRLILEKLGISSCCYNSNVENKAQMRKDIMQ------FKYKFIYVSPESVVHLKDLIVK 137
Query: 506 LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKE 565
LE L+A IDEAHC+S +G DFR Y+ + K+ PN P+LALTATAT V +
Sbjct: 138 LEDFQGISLIA---IDEAHCISAYGFDFRTAYREITFFKEILPNVPILALTATATNIVAK 194
Query: 566 DVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGL----------SYGHFFLLKE-- 613
D+ + L L + SF+RPNL+++ ++ + S + L K+
Sbjct: 195 DICKVLQLKTNEPIKASFDRPNLYLEVRTKSKNPANDIVPIINKYPNQSVIIYCLTKKET 254
Query: 614 ------FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV 667
V + CG YH + + + ++I I+ AT+AFGMGINKPDV
Sbjct: 255 QKIADILTVHKVVCG----IYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDV 310
Query: 668 RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPG 727
R VIH+ PK+IEGY+QE GRAGRDG++S C +Y++ DF+ + ISQ
Sbjct: 311 RVVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQN---------- 360
Query: 728 HNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSK 787
N+ +T L +M Y CRR + L +F E+ C CDNC
Sbjct: 361 -------NNPNYQKTQLALLEQMKKYVTLRT-CRRKILLEYFDEE-TKEKC-DFCDNCCG 410
Query: 788 I-KSFIEKDVTDT------AKKLVELVK-LTGQQFSSSHILEVFRGSLNQ----YVKKHR 835
+ K+ + ++VT AK ++EL++ + + F + + + RGS N+ ++K++
Sbjct: 411 VHKNIVNENVTSKQNVQSEAKLIIELIESIPNRNFGVNMYINILRGSKNKAISPAIRKNK 470
Query: 836 HETLSLHGAGKHLAKSEASRILRHLVIEDFL 866
+ +G G + + +L+ + FL
Sbjct: 471 Y-----YGLGSKHSSEWWKEVFDNLIKQGFL 496
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 247 bits (631), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 207/345 (60%), Gaps = 26/345 (7%)
Query: 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVI 439
KL+ + FG SF+ Q++II + +SG D ++PTGGGKSL YQLP + G+ L++
Sbjct: 3 KLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIV 62
Query: 440 SPLVSLIQDQIMHL-LQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
SPL+SL++DQ+ L + A L+ + E+Q +L ++ +YK LY++PE + +
Sbjct: 63 SPLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIH----RYKFLYLSPEAL-Q 117
Query: 499 SDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTAT 558
S +L +L+S+ ++ VIDEAHC+S+WGHDFRPDY LG L++K + PVLALTAT
Sbjct: 118 SPYVLEKLKSVP----ISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTAT 173
Query: 559 ATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVA-------------ERLQ-VGLS 604
AT +DV+ L L + + S NRPN+ + E A E LQ G+
Sbjct: 174 ATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIV 233
Query: 605 YGHFF-LLKEFY-VVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662
Y KE + + +A FYHG ++ R +Q+Q+ +++++IC T AFGMG+
Sbjct: 234 YCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGV 293
Query: 663 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707
+KPD+R+VIH LP++ E + QE GRAGRDG+ S +L + DF
Sbjct: 294 DKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDF 338
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 193/353 (54%), Gaps = 27/353 (7%)
Query: 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447
V+G SFR Q + I + G +++PTG GKSL YQ+PA+I PGITLV+SPLVSL+
Sbjct: 264 VYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMI 323
Query: 448 DQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507
DQ+ HL + I LS + E E LR+L K +L+V+PE++ + L
Sbjct: 324 DQLKHL-PSIIKGGLLSSSQRPEEATETLRKLKEGIIK--VLFVSPERLLNVEFLSMFRM 380
Query: 508 SLNARELLARIVIDEAHCVSQWGHDFRPDYQGL--GILKQKFPNTPVLALTATATASVKE 565
SL+ ++ +V+DEAHCVS+W H+FRP Y L +L + +LA+TATAT +
Sbjct: 381 SLS----VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQ 436
Query: 566 DVVQALGLVNCIIFRQSFNRPNLWMDCE-KVAERLQVGLSYGHFFLLKEFYVVSLECGHK 624
V+ +L + + + ++S R N + A R++ L KE + + C +
Sbjct: 437 AVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ 496
Query: 625 ----------------AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR 668
A YH + R +Q+ + ++I ++ ATVAFGMG++K DV
Sbjct: 497 YETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVG 556
Query: 669 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI-SQGVAE 720
VIH S+P S+E Y QE GRAGRDG+ S C L+Y +++++ + S GV E
Sbjct: 557 AVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDE 609
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 186 bits (473), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 192/352 (54%), Gaps = 39/352 (11%)
Query: 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLV 438
+ LE ++++G FR Q E+I+ ++ D V++PTGGGKS+ +QLPAL+ G+TLV
Sbjct: 5 QSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLTLV 64
Query: 439 ISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
+SPLV+L++DQ+ L + N+PA L + E++++L +L + KLLY++PE +
Sbjct: 65 VSPLVALMEDQVQSLRRQNLPAACLHSQLSRPERKQVLYQLGQQ--QLKLLYLSPETLLS 122
Query: 499 SDV--LLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF----PNTPV 552
V LLRQ + L I++DEAHC+ QWG FRP Y+ LG L++ P+
Sbjct: 123 EPVWNLLRQ-----PQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPL 177
Query: 553 LALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKV----AERLQVGLSYGHF 608
A TATA + +V+ L L + F+ S +RP L + + V R Q+
Sbjct: 178 AAFTATADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQL-----RR 232
Query: 609 FLLKEFYVVSL-----------------ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651
FLLK L E G + YHG + P QR ++++W +I+
Sbjct: 233 FLLKHLQESGLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISS 292
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 703
+ T AFG+GI+KPD R+V+H+ P + Y QE GRAGRD Q + C+ S
Sbjct: 293 VVCTNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVS 344
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 186/382 (48%), Gaps = 62/382 (16%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVS 444
G +FRP Q I +SG +++PTG GKSL YQLPAL+ P +TLV+SPL+S
Sbjct: 493 LGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLS 552
Query: 445 LIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV----AKSD 500
L+ DQ+ L + + A L M +++ +L+++ + + +L V+PE + A+
Sbjct: 553 LMDDQVSD-LPSCLKAACLHSGMTKKQRESVLKKVRA--AQVHVLIVSPEALVGCGARGP 609
Query: 501 VLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY-QGLGILKQKFPNTPVLALTATA 559
L Q L +A IDE HC+SQW H+FRP Y + +L++ L LTATA
Sbjct: 610 GSLPQAAQLPP---IAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATA 666
Query: 560 TASVKEDVVQALGLVNCIIFRQSFNRP---NLWMDCEKVAERLQVGLSYGHFFLLKEFYV 616
T S DV Q LG+ S N P +L + ++ +++ V L G F + +
Sbjct: 667 TRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVI 726
Query: 617 VSLE--------------------------CGHK--AAFYHGSIDPAQRAFVQKQWSKDE 648
+ CG + A YH + +R VQ+ + +
Sbjct: 727 IYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGH 786
Query: 649 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY------ 702
+ ++ ATVAFGMG+++PDVR V+H LP S E Y Q GRAGRDG+ + C L+
Sbjct: 787 LRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGED 846
Query: 703 ----------SYSDFIRVKHMI 714
+DF+ VK ++
Sbjct: 847 LWELRRHAHADSTDFLAVKRLV 868
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 195/428 (45%), Gaps = 65/428 (15%)
Query: 347 VEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVF------GNHSFRPNQRE 400
V EP +P V + + + + +L +VF G+ +FRP Q
Sbjct: 428 VGPEPLVPSPQPVPEVPSLDPTVLPLYSLGPSGQLAETPAEVFQALEQLGHQAFRPGQER 487
Query: 401 IINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQA 456
+ +SG +++PTG GKSL YQLPAL+ P +TLV+SPL+SL+ DQ+ L
Sbjct: 488 AVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQVSGLPPC 547
Query: 457 NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516
A SG M +++ +L+++ + + +L +TPE + + L +A
Sbjct: 548 LKAACIHSG-MTRKQRESVLQKIRA--AQVHVLMLTPEALVGAG----GLPPAAQLPPVA 600
Query: 517 RIVIDEAHCVSQWGHDFRPDY-QGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVN 575
IDEAHC+SQW H+FRP Y + +L+++ L LTATAT DV Q L +
Sbjct: 601 FACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVAQHLAVAE 660
Query: 576 CIIFRQSFNRP---NLWMDCEKVAERLQVGLSYGHFFL--------------LKEFYVVS 618
P +L + ++ ++ + L G F + +
Sbjct: 661 EPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTERIAALL 720
Query: 619 LECGHKAAF--------------YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664
C H A YH + +R VQ+ + + ++ ++ ATVAFGMG+++
Sbjct: 721 RTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDR 780
Query: 665 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS----------------YSDFI 708
PDVR V+H LP S E Y Q GRAGRDGQ + C L+ +DF+
Sbjct: 781 PDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTDFL 840
Query: 709 RVKHMISQ 716
VK ++ +
Sbjct: 841 AVKRLVQR 848
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 134/223 (60%), Gaps = 20/223 (8%)
Query: 377 WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGIT 436
W K++ + + FG S R QRE ++ ++ D VL TG GKSL +Q+PAL+ +
Sbjct: 152 WEKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVV 211
Query: 437 LVISPLVSLIQDQIMHLLQANIPATFL-SGNMEWTEQQEILRELNSDYCKYKLLYVTPEK 495
+VISPL+SL+ DQ + L + + A FL SG ++ +++ ++ + Y+++YV PE
Sbjct: 212 VVISPLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGM------YQIIYVCPET 265
Query: 496 VAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP------- 548
V + L++ L+ L +A IDEAHCVS+WGHDFRP Y+ L +L++ F
Sbjct: 266 VVR---LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFL 322
Query: 549 --NTPVLALTATATASVKEDVVQALGLVN-CIIFRQSFNRPNL 588
+ P++ALTATAT +V+ED++++L L I SF RPNL
Sbjct: 323 EYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNL 365
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 29/170 (17%)
Query: 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 681
G KAA Y+ S+ V + + +++ ++ AT+AFGMGI+K +VR +IH+ +S+E
Sbjct: 521 GLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEA 580
Query: 682 YHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLE 741
Y+QE GRAGRDG+ + CVL Y+D R ++ R +
Sbjct: 581 YYQEAGRAGRDGELAECVL---YADLSRAPTLL---------------------PSRRSK 616
Query: 742 TNTENLLRMVSYC----ENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSK 787
TE +M+S C N CR + + +FGE+F S C +CD C++
Sbjct: 617 EQTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKC-NSCDVCTE 665
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 147/331 (44%), Gaps = 43/331 (12%)
Query: 410 DVFVLMPTGGGKSLTYQLPALI-----CPG-----ITLVISPLVSLIQDQIMHLLQANIP 459
++ ++PTGGGKSL++ +PALI PG +TLV+ P++SL QD ++ + + +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVNEKGLL 1267
Query: 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519
SGN WT +++ L + + L++ + A ++ LR ESL LAR+V
Sbjct: 1268 VC--SGN--WTAFKDVRLTLET---QLPDLFILTYESALTNSGLRFFESLATLGRLARVV 1320
Query: 520 IDEAHCV---SQW------GHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQA 570
IDEAH + W Y L +L FP L + A T V++
Sbjct: 1321 IDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQ--LEMVARQTFCTNFYVLRE 1378
Query: 571 LGLV--NCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLL-----------KEFYVV 617
N F ++ +D + +R +V G + + +
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 618 SLECGHKAAFYHGSIDPAQRA--FVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 675
L Y G + +R F + + + I+ AT AFG+GIN VR V+H+ L
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1498
Query: 676 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
P S Y QE GRAGRDG+ + L+Y D
Sbjct: 1499 PASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 147/331 (44%), Gaps = 43/331 (12%)
Query: 410 DVFVLMPTGGGKSLTYQLPALI-----CPG-----ITLVISPLVSLIQDQIMHLLQANIP 459
++ ++PTGGGKSL++ +PALI PG +TLV+ P++SL QD ++ + + +
Sbjct: 1389 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVNEKGLL 1448
Query: 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519
SGN WT +++ L + + L++ + A ++ LR ESL LAR+V
Sbjct: 1449 VC--SGN--WTAFKDVRLTLET---QLPDLFILTYESALTNSGLRFFESLATLGRLARVV 1501
Query: 520 IDEAHCV---SQW------GHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQA 570
IDEAH + W Y L +L FP L + A T V++
Sbjct: 1502 IDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQ--LEMVARQTFCTNFYVLRE 1559
Query: 571 LGLV--NCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLL-----------KEFYVV 617
N F ++ +D + +R +V G + + +
Sbjct: 1560 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1619
Query: 618 SLECGHKAAFYHGSIDPAQRA--FVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 675
L Y G + +R F + + + I+ AT AFG+GIN VR V+H+ L
Sbjct: 1620 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1679
Query: 676 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
P S Y QE GRAGRDG+ + L+Y D
Sbjct: 1680 PASSMDYVQETGRAGRDGKYAIAALFYEKYD 1710
>sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana
GN=RH28 PE=2 SV=1
Length = 789
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 48/344 (13%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL---------ICPGITLVISP---LV 443
P Q I ++G D+ TG GK+ + LP L + L+++P L
Sbjct: 192 PIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELA 251
Query: 444 SLIQDQIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVL 502
I I +L Q +I + G + EQ+ +LR + ++ TP ++
Sbjct: 252 VQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPD------IVVATPGRMIDH--- 302
Query: 503 LRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATAS 562
LR S++ +L A +++DEA + Q G F + L L K T + +AT T
Sbjct: 303 LRNSMSVDLDDL-AVLILDEADRLLQTG--FATEITELVRLCPKRRQT--MLFSATMTEE 357
Query: 563 VKEDVVQAL----------------GLVNCII----FRQSFNRPNLWMDCEKVAERLQVG 602
VKE V +L GL ++ R++ L C + + +V
Sbjct: 358 VKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTF-KSKVI 416
Query: 603 LSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662
+ G ++ G KAA HG++ AQR + + K E++ + AT G+
Sbjct: 417 IFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGL 476
Query: 663 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
+ V+ VI+++ P+ I+ Y GR R G+ V + + SD
Sbjct: 477 DIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD 520
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 143/349 (40%), Gaps = 58/349 (16%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI------------CPGITLVISPL- 442
P Q + M G D+ + TG GK+L+Y LPA++ P I LV++P
Sbjct: 124 PIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGP-IVLVLAPTR 182
Query: 443 ---VSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499
V + Q+ + I T + G + Q +R+L +++ TP +
Sbjct: 183 ELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQ---VRDLQKGV---EIVIATPGR---- 232
Query: 500 DVLLRQLESLNAR-ELLARIVIDEAHCVSQWGHD---------FRPDYQGLGI------- 542
L+ +ES N + +V+DEA + G D RPD Q L
Sbjct: 233 --LIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKE 290
Query: 543 ---LKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERL 599
L +KF P + ++ + Q +V+ I Q +N+ ++ R+
Sbjct: 291 VEQLSKKFLYNPYKVIIGSSDLKANRAIRQ---IVDVISESQKYNKLVKLLEDIMDGSRI 347
Query: 600 QVGLSY--GHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVA 657
V L G + ++ + G A HG A+R +V ++ + I+ AT
Sbjct: 348 LVFLDTKKGCDQITRQLRM----DGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDV 403
Query: 658 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
G++ DV++VI++ P S+E Y GR GR G + + +++ ++
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452
>sp|Q49Z29|Y802_STAS1 Probable DEAD-box ATP-dependent RNA helicase SSP0802
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1
Length = 506
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 145/362 (40%), Gaps = 69/362 (19%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL----ICPGI-TLVISPLV 443
G + P Q+E I + G DV TG GK+ + +P + G+ +L+++P
Sbjct: 20 MGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVADQEGVQSLILAPTR 79
Query: 444 SLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK 498
L Q+ L+A NI + G M Q + L++ +++ TP +V
Sbjct: 80 ELAM-QVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKK------GPQIVVGTPGRV-- 130
Query: 499 SDVLLRQLESLNAREL----LARIVIDEAHCVSQWGH--------DFRPDYQ-------- 538
++ LN R L + +++DEA + G D P Q
Sbjct: 131 -------IDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSA 183
Query: 539 ----GLGILKQKFPNTPVLALTATATAS---VKE--DVVQALGLVNCIIFRQSFNRPNLW 589
+ L Q+F +PV+ T S ++E +V+ L + ++P L
Sbjct: 184 TMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDVHQPELA 243
Query: 590 MDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEI 649
+ + R+ E + G+KA HG I A+R V K++ D++
Sbjct: 244 IVFGRTKRRVD------------ELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQL 291
Query: 650 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS--YSDF 707
+I+ AT G++ V V + +P+ E Y GR GR G++ + + + D+
Sbjct: 292 DILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDY 351
Query: 708 IR 709
IR
Sbjct: 352 IR 353
>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP2 PE=1 SV=1
Length = 546
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 48/333 (14%)
Query: 405 TMSGHDVFVLMPTGGGKSLTYQLPA--------LICPG---ITLVISP---LVSLIQDQI 450
+SG D+ + TG GK+L+Y LP L+ PG I LV++P L IQ +
Sbjct: 147 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC 206
Query: 451 MHLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL 509
++ I T + G + ++Q +R+L+ +++ TP ++ + + ++
Sbjct: 207 SKFGHSSRIRNTCVYGGVPKSQQ---IRDLSR---GSEIVIATPGRL----IDMLEIGKT 256
Query: 510 NARELLARIVIDEAHCVSQWGHD---------FRPDYQGLGI----------LKQKFPNT 550
N + + +V+DEA + G + RPD Q L L + N
Sbjct: 257 NLKRV-TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLND 315
Query: 551 PVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL 610
P+ + S ++ Q + +V+ R N+ +++ + + +
Sbjct: 316 PIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK---YLETASQDNEYKTLIFASTKRM 372
Query: 611 LKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 670
+ E G A HG D +R +V +++ I+ AT GI+ + +V
Sbjct: 373 CDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYV 432
Query: 671 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 703
I++ +P +IE Y GR GR G + + +++
Sbjct: 433 INYDMPGNIEDYVHRIGRTGRAGATGTAISFFT 465
>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP2 PE=3 SV=1
Length = 546
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 48/333 (14%)
Query: 405 TMSGHDVFVLMPTGGGKSLTYQLPA--------LICPG---ITLVISP---LVSLIQDQI 450
+SG D+ + TG GK+L+Y LP L+ PG I LV++P L IQ +
Sbjct: 147 ALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEC 206
Query: 451 MHLLQAN-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL 509
++ I T + G + ++Q +R+L+ +++ TP ++ + + ++
Sbjct: 207 SKFGHSSRIRNTCVYGGVPKSQQ---IRDLSR---GSEIVIATPGRL----IDMLEIGKT 256
Query: 510 NARELLARIVIDEAHCVSQWGHD---------FRPDYQGLGI----------LKQKFPNT 550
N + + +V+DEA + G + RPD Q L L + N
Sbjct: 257 NLKRV-TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLND 315
Query: 551 PVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFL 610
P+ + S ++ Q + +V+ R N+ +++ + + +
Sbjct: 316 PIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK---YLETASQDNEYKTLIFASTKRM 372
Query: 611 LKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 670
+ E G A HG D +R +V +++ I+ AT GI+ + +V
Sbjct: 373 CDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYV 432
Query: 671 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 703
I++ +P +IE Y GR GR G + + +++
Sbjct: 433 INYDMPGNIEDYVHRIGRTGRAGATGTAISFFT 465
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp.
japonica GN=Os12g0611200 PE=2 SV=1
Length = 628
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 144/363 (39%), Gaps = 92/363 (25%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------PG---ITLVISPLV 443
P QR ++ M G D+ TG GK+L + +P L PG + +V++P
Sbjct: 123 PIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTR 182
Query: 444 SLIQDQIMHLLQ--ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDV 501
L + Q+ +N+ + G ++Q +R+LN ++ TP +V D+
Sbjct: 183 ELAK-QVEREFSDSSNVETICVYGGTPISQQ---IRQLNYGV---DVVIGTPGRVI--DL 233
Query: 502 LLRQLESLNARELLARIVIDEAHCVSQWGHD---------FRPDYQGLGI---------- 542
L R +LN E+ +V+DEA + G D P Q L
Sbjct: 234 LKRG--ALNLSEVRF-VVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQR 290
Query: 543 LKQKFPNTPV---------------LALTATAT------ASVKEDVVQALGLVNCIIFRQ 581
L QK+ PV ++L + A+ A + E + + CI+F Q
Sbjct: 291 LTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQ 350
Query: 582 SFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQ 641
+ ++ A+RL + S +C HG I AQR
Sbjct: 351 T----------KRDADRLSYTMGR------------SFQC----QALHGDITQAQRERTL 384
Query: 642 KQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701
K + + NI+ AT G++ P+V VIH LP S E + GR GR G++ ++
Sbjct: 385 KGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVM 444
Query: 702 YSY 704
+SY
Sbjct: 445 HSY 447
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=rrp3 PE=3 SV=2
Length = 445
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 150/378 (39%), Gaps = 72/378 (19%)
Query: 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGI--TLVISPL 442
G + P Q I + G D+ L TG GK+ + LP L P +L+++P
Sbjct: 46 LGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLILAPT 105
Query: 443 VSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVA 497
L Q QI H ++A ++ T L G M+ Q L + K ++ TP +
Sbjct: 106 RELAQ-QIAHTVEALGARISVRCTLLIGGMDMISQAIALGK------KPHVIVATPGR-- 156
Query: 498 KSDVLLRQLESLNAREL--LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLAL 555
LL LE+ L L +V+DEA + DF P L L + P
Sbjct: 157 ----LLDHLENTKGFSLRTLKYLVLDEADRLLDL--DFGPI---LDKLLRLLPKRKTYLF 207
Query: 556 TATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLSYGHFFLLKEFY 615
+AT ++ V+ +Q L + + R S + N + ++ LQ L H F K+FY
Sbjct: 208 SATMSSKVES--LQRASLSDPV--RVSVSTKN-----QTASKLLQSYLFIPHKF--KDFY 256
Query: 616 VVSL---------------------------ECGHKAAFYHGSIDPAQRAFVQKQWSKDE 648
+V L G A HG + + R ++
Sbjct: 257 LVYLLNERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARS 316
Query: 649 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG---RAGRDGQRSSCVLYYSYS 705
N++ AT G++ P V +V+++ LP+ + Y G RAG+ G S V Y
Sbjct: 317 RNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVE 376
Query: 706 DFIRVKHMISQGVAEQSP 723
++R++ + + V E P
Sbjct: 377 LWLRIEDALGKKVEEYKP 394
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 145/368 (39%), Gaps = 91/368 (24%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL----------------ICP 433
G P Q+ ++ M G D+ TG GK+L + +P + +C
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLC- 181
Query: 434 GITLVISPLVSLIQDQIMHLLQANIPA---TFLSGNMEWTEQQEILRELNSDYCKYKLLY 490
LV++P L + Q+ + + P+ L G +Q +R+L DY +
Sbjct: 182 ---LVLAPTRELAR-QVEKEFRESAPSLDTICLYGGTPIGQQ---MRQL--DYG-VDVAV 231
Query: 491 VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550
TP +V + L + +LN E+ +V+DEA + Q G F D + I+ +K P
Sbjct: 232 GTPGRV----IDLMKRGALNLSEV-QFVVLDEADQMLQVG--FAEDVE---IILEKLPEK 281
Query: 551 -PVLALTATATASVKE------------DVVQ------ALGLVNCIIFRQSFNRPNL--- 588
+ +AT + ++ D+V A G+ I S+ R ++
Sbjct: 282 RQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGP 341
Query: 589 -------------WMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPA 635
+ ++ A+RL L+ S +C HG I +
Sbjct: 342 LVTEHAKGGKCIVFTQTKRDADRLSYALAR------------SFKC----EALHGDISQS 385
Query: 636 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 695
QR + NI+ AT G++ P+V +IH+ LP + E + GR GR G++
Sbjct: 386 QRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKK 445
Query: 696 SSCVLYYS 703
S +L YS
Sbjct: 446 GSAILIYS 453
>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp.
japonica GN=Os12g0481100 PE=2 SV=2
Length = 802
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 138/355 (38%), Gaps = 52/355 (14%)
Query: 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL--------ICPGI-TL 437
+ G P Q I ++G D+ TG GK+ + LP L P I L
Sbjct: 210 EALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVL 269
Query: 438 VISP---LVSLIQDQIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493
+++P L + + I L Q +I + G + Q+ LR + ++ TP
Sbjct: 270 ILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPD------IVVATP 323
Query: 494 EKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVL 553
++ LR S+ E LA +++DEA + + G F + Q L + + T +
Sbjct: 324 GRIIDH---LRNSLSVGL-EDLAILILDEADRLLELG--FSAEIQELIRMCPRRRQT--M 375
Query: 554 ALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD--------CEKVAERLQVGLSY 605
+AT T + E V +L + S RP + E E + + L
Sbjct: 376 LFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCL 435
Query: 606 GHF--------------FLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651
F LK + +S G KAA HG++ AQR + + K E++
Sbjct: 436 KTFKDKVIIFSGTKHSAHRLKIIFGLS---GMKAAELHGNLTQAQRLEALELFKKQEVDF 492
Query: 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706
+ AT GI+ VR VI+ S P+ Y GR R G+ V + + D
Sbjct: 493 LIATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDD 547
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 146/369 (39%), Gaps = 82/369 (22%)
Query: 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI--------CPG---ITLVISPL-- 442
P Q + + G D+ + TG GK+L Y LPA++ PG I LV++P
Sbjct: 116 PIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRE 175
Query: 443 --VSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSD 500
V + Q+ + I +T + G + Q +R+L +++ TP +
Sbjct: 176 LAVQIQQEATKFGASSKIKSTCIYGGVPKGPQ---VRDLQKGV---EIVIATPGR----- 224
Query: 501 VLLRQLES--LNARELLARIVIDEAHCVSQWGHD---------FRPDYQGLGI------- 542
L+ +ES N R + +V+DEA + G + RPD Q L
Sbjct: 225 -LIDMIESHHTNLRRV-TYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKE 282
Query: 543 ---LKQKFPNTPVLALTATATASVKEDVVQAL----------GLVNCIIFRQSFNRPNLW 589
L + F P + + + Q + LVN + +R ++
Sbjct: 283 VEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDGSRILIF 342
Query: 590 MD----CEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWS 645
MD C+++ +L++ G A HG A+R +V ++
Sbjct: 343 MDTKKGCDQITRQLRMD-------------------GWPALSIHGDKSQAERDWVLSEFK 383
Query: 646 KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 705
+ I+ AT G++ DV++VI++ P S+E Y GR GR G + + +++ +
Sbjct: 384 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAA 443
Query: 706 DFIRVKHMI 714
+ K +I
Sbjct: 444 NARFAKDLI 452
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana
GN=RH9 PE=2 SV=1
Length = 610
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 149/384 (38%), Gaps = 88/384 (22%)
Query: 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGIT------------- 436
G P Q+ ++ M G D+ TG GK+L + +P I I
Sbjct: 135 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP--IIDKIIKFNAKHGRGKNPQ 192
Query: 437 -LVISPLVSLIQDQIMHLLQANIPA---TFLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492
LV++P L + Q+ + + P+ L G +Q +RELN + T
Sbjct: 193 CLVLAPTRELAR-QVEKEFRESAPSLDTICLYGGTPIGQQ---MRELN---YGIDVAVGT 245
Query: 493 PEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTP 551
P ++ + L + +LN E+ +V+DEA + Q G F D + I+ QK P
Sbjct: 246 PGRI----IDLMKRGALNLSEV-QFVVLDEADQMLQVG--FAEDVE---IILQKLPAKRQ 295
Query: 552 VLALTATATASVKE------------DVVQ------ALGLVNCIIFRQSFNRPNL----- 588
+ +AT + ++ D+V A G+ I S+ R ++
Sbjct: 296 SMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLV 355
Query: 589 -----------WMDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQR 637
+ ++ A+RL GL+ + K HG I AQR
Sbjct: 356 KEHGKGGKCIVFTQTKRDADRLAFGLAKSY----------------KCEALHGDISQAQR 399
Query: 638 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSS 697
+ +I+ AT G++ P+V VIH+ LP + E + GR GR G++ S
Sbjct: 400 ERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGS 459
Query: 698 CVLYYSYSDFIRVKHMISQGVAEQ 721
+L + D R MI + V +
Sbjct: 460 AILIHG-QDQTRAVKMIEKEVGSR 482
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679
+ G++ HG QR + + N++ AT G GI+ PDV VI++ +PK I
Sbjct: 598 KAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHI 657
Query: 680 EGYHQECGRAGRDGQRSSCVLYYSYSD---FIRVKHMISQGVA---------EQSPFTPG 727
E Y GR GR G+ + + D F +K M+ Q + E S F PG
Sbjct: 658 EMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPG 717
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,881,885
Number of Sequences: 539616
Number of extensions: 18345646
Number of successful extensions: 64588
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 61704
Number of HSP's gapped (non-prelim): 2842
length of query: 1136
length of database: 191,569,459
effective HSP length: 128
effective length of query: 1008
effective length of database: 122,498,611
effective search space: 123478599888
effective search space used: 123478599888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)