Query 001155
Match_columns 1136
No_of_seqs 656 out of 3854
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 1E-213 3E-218 1949.1 92.7 1091 2-1102 69-1179(1195)
2 COG0514 RecQ Superfamily II DN 100.0 1.6E-99 3E-104 895.5 47.4 571 380-1024 4-589 (590)
3 PRK11057 ATP-dependent DNA hel 100.0 8E-93 1.7E-97 870.7 59.7 583 377-1024 9-604 (607)
4 TIGR01389 recQ ATP-dependent D 100.0 5.1E-88 1.1E-92 828.5 58.6 577 382-1022 2-591 (591)
5 KOG0351 ATP-dependent DNA heli 100.0 1.4E-80 3.1E-85 770.4 26.2 618 377-1024 248-903 (941)
6 KOG0353 ATP-dependent DNA heli 100.0 2.5E-76 5.4E-81 640.5 40.4 503 368-905 69-638 (695)
7 TIGR00614 recQ_fam ATP-depende 100.0 5.4E-71 1.2E-75 660.5 45.5 441 384-847 2-469 (470)
8 KOG0352 ATP-dependent DNA heli 100.0 5.5E-68 1.2E-72 584.3 27.3 398 379-789 5-434 (641)
9 KOG0331 ATP-dependent RNA heli 100.0 3.3E-45 7.1E-50 427.0 29.3 328 371-715 92-458 (519)
10 PTZ00110 helicase; Provisional 100.0 1.2E-44 2.5E-49 439.7 33.6 328 369-714 131-493 (545)
11 PRK04837 ATP-dependent RNA hel 100.0 1.8E-44 3.9E-49 426.9 30.4 327 368-713 8-370 (423)
12 PLN00206 DEAD-box ATP-dependen 100.0 6.3E-44 1.4E-48 431.6 32.3 326 369-714 122-484 (518)
13 KOG0330 ATP-dependent RNA heli 100.0 3.1E-44 6.7E-49 395.0 22.8 328 374-719 65-424 (476)
14 KOG0951 RNA helicase BRR2, DEA 100.0 1.4E-44 3E-49 436.8 20.8 420 298-757 232-750 (1674)
15 PRK10590 ATP-dependent RNA hel 100.0 2.7E-43 5.9E-48 420.4 31.4 322 374-712 5-359 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 3.9E-43 8.4E-48 419.8 32.3 327 369-713 5-357 (460)
17 PRK04537 ATP-dependent RNA hel 100.0 5.7E-43 1.2E-47 426.5 33.1 324 374-713 13-372 (572)
18 PRK11192 ATP-dependent RNA hel 100.0 8.7E-43 1.9E-47 413.8 32.1 323 374-712 5-359 (434)
19 PRK01297 ATP-dependent RNA hel 100.0 1.2E-42 2.6E-47 417.1 33.5 328 373-713 90-450 (475)
20 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-43 2.5E-48 426.1 20.4 388 301-729 38-515 (1230)
21 COG0513 SrmB Superfamily II DN 100.0 4.6E-42 9.9E-47 413.7 31.3 325 374-714 33-390 (513)
22 PRK11634 ATP-dependent RNA hel 100.0 1.2E-41 2.5E-46 417.7 32.8 324 374-714 10-361 (629)
23 KOG0333 U5 snRNP-like RNA heli 100.0 1.4E-41 3.1E-46 384.4 28.6 328 368-712 245-631 (673)
24 PTZ00424 helicase 45; Provisio 100.0 4E-41 8.6E-46 395.0 31.2 328 368-713 28-382 (401)
25 KOG0338 ATP-dependent RNA heli 100.0 7.3E-42 1.6E-46 385.1 20.7 328 374-717 185-545 (691)
26 KOG0341 DEAD-box protein abstr 100.0 1.1E-41 2.4E-46 372.4 17.9 318 368-706 170-529 (610)
27 KOG0345 ATP-dependent RNA heli 100.0 2.3E-40 5E-45 371.4 28.4 337 368-720 4-379 (567)
28 TIGR03817 DECH_helic helicase/ 100.0 4.6E-40 1E-44 410.7 31.9 320 374-704 18-385 (742)
29 KOG0336 ATP-dependent RNA heli 100.0 8.4E-41 1.8E-45 367.7 21.2 325 374-715 224-582 (629)
30 KOG0342 ATP-dependent RNA heli 100.0 1.4E-39 3E-44 367.8 26.9 331 368-714 80-446 (543)
31 PRK02362 ski2-like helicase; P 100.0 1.7E-39 3.7E-44 408.2 29.5 366 375-762 6-456 (737)
32 KOG0340 ATP-dependent RNA heli 100.0 2.5E-39 5.5E-44 352.8 21.9 326 374-713 11-369 (442)
33 KOG0335 ATP-dependent RNA heli 100.0 5.4E-39 1.2E-43 369.3 23.6 319 379-711 83-450 (482)
34 KOG0348 ATP-dependent RNA heli 100.0 6.6E-39 1.4E-43 363.1 22.5 325 374-713 140-562 (708)
35 KOG0347 RNA helicase [RNA proc 100.0 1.2E-39 2.7E-44 370.0 16.4 335 364-714 177-579 (731)
36 KOG0328 Predicted ATP-dependen 100.0 1.9E-38 4E-43 336.5 21.5 324 374-713 31-381 (400)
37 KOG0343 RNA Helicase [RNA proc 100.0 5.1E-38 1.1E-42 356.6 26.4 327 373-720 72-438 (758)
38 KOG0326 ATP-dependent RNA heli 100.0 3.7E-39 8E-44 346.4 14.0 330 368-716 85-440 (459)
39 PRK00254 ski2-like helicase; P 100.0 4.8E-37 1E-41 385.2 28.9 362 375-761 6-445 (720)
40 KOG0339 ATP-dependent RNA heli 100.0 5.7E-37 1.2E-41 345.0 24.3 328 372-716 225-586 (731)
41 PRK01172 ski2-like helicase; P 100.0 4.3E-36 9.3E-41 374.6 32.1 363 375-761 6-435 (674)
42 PRK13767 ATP-dependent helicas 100.0 4.6E-36 9.9E-41 381.5 30.5 309 379-703 20-396 (876)
43 COG1204 Superfamily II helicas 100.0 3.3E-35 7.1E-40 364.2 23.2 321 379-721 18-425 (766)
44 PRK14701 reverse gyrase; Provi 100.0 1.5E-34 3.3E-39 379.1 28.0 319 379-716 66-467 (1638)
45 KOG0346 RNA helicase [RNA proc 100.0 9.8E-35 2.1E-39 323.5 21.7 318 373-708 22-413 (569)
46 TIGR00580 mfd transcription-re 100.0 4.8E-34 1E-38 360.3 30.6 309 374-706 433-771 (926)
47 PRK10917 ATP-dependent DNA hel 100.0 1.3E-33 2.8E-38 351.1 33.4 300 380-703 249-587 (681)
48 COG1201 Lhr Lhr-like helicases 100.0 5.4E-34 1.2E-38 349.2 28.7 312 377-704 8-361 (814)
49 TIGR00643 recG ATP-dependent D 100.0 2E-33 4.2E-38 347.3 31.2 298 381-702 224-563 (630)
50 KOG0334 RNA helicase [RNA proc 100.0 4.4E-34 9.5E-39 347.7 23.3 330 368-713 365-728 (997)
51 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-34 6E-39 324.3 19.0 330 380-717 147-552 (620)
52 KOG0344 ATP-dependent RNA heli 100.0 5.9E-34 1.3E-38 329.2 17.9 328 375-714 141-504 (593)
53 PRK10689 transcription-repair 100.0 1.2E-32 2.6E-37 354.2 30.9 307 374-704 582-918 (1147)
54 PRK09751 putative ATP-dependen 100.0 2.4E-32 5.2E-37 352.8 24.5 278 413-704 1-384 (1490)
55 KOG4284 DEAD box protein [Tran 100.0 3.8E-32 8.3E-37 312.5 21.5 320 375-713 30-388 (980)
56 KOG0332 ATP-dependent RNA heli 100.0 1.4E-31 3.1E-36 293.6 23.7 324 374-716 94-454 (477)
57 KOG0327 Translation initiation 100.0 3E-31 6.4E-36 294.2 19.0 329 369-714 27-379 (397)
58 COG1202 Superfamily II helicas 100.0 2.6E-30 5.5E-35 295.3 17.5 316 374-706 198-554 (830)
59 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.2E-29 4.8E-34 310.4 25.0 304 381-702 4-388 (844)
60 KOG0337 ATP-dependent RNA heli 100.0 1.8E-30 3.9E-35 288.6 13.5 325 368-713 21-376 (529)
61 COG1205 Distinct helicase fami 100.0 2.4E-29 5.1E-34 316.0 24.2 316 382-707 60-424 (851)
62 COG1111 MPH1 ERCC4-like helica 100.0 2.3E-28 5.1E-33 279.2 28.3 303 390-711 12-489 (542)
63 TIGR03158 cas3_cyano CRISPR-as 100.0 9.2E-29 2E-33 286.5 25.3 281 397-690 1-357 (357)
64 PRK09401 reverse gyrase; Revie 100.0 6.1E-29 1.3E-33 320.7 24.8 294 379-690 67-429 (1176)
65 TIGR01587 cas3_core CRISPR-ass 100.0 9.5E-29 2.1E-33 286.3 22.6 286 410-706 1-337 (358)
66 PHA02558 uvsW UvsW helicase; P 100.0 8.7E-28 1.9E-32 290.1 26.7 285 392-706 113-453 (501)
67 PHA02653 RNA helicase NPH-II; 100.0 7.5E-27 1.6E-31 286.6 25.9 282 396-707 167-516 (675)
68 PRK09200 preprotein translocas 99.9 8.5E-26 1.8E-30 278.8 30.4 309 379-707 65-543 (790)
69 PRK12898 secA preprotein trans 99.9 5.3E-26 1.1E-30 275.4 27.6 309 379-707 90-588 (656)
70 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4.5E-26 9.8E-31 285.6 27.5 284 399-709 8-340 (819)
71 PRK05580 primosome assembly pr 99.9 1.1E-25 2.3E-30 279.8 29.9 307 393-714 144-558 (679)
72 PRK13766 Hef nuclease; Provisi 99.9 2.2E-25 4.8E-30 283.0 33.2 295 392-706 14-480 (773)
73 PRK11664 ATP-dependent RNA hel 99.9 4.6E-26 1E-30 286.0 25.3 285 399-709 11-343 (812)
74 KOG0354 DEAD-box like helicase 99.9 5.6E-26 1.2E-30 273.1 24.5 159 390-563 59-225 (746)
75 KOG0329 ATP-dependent RNA heli 99.9 9.3E-27 2E-31 244.5 11.8 300 373-709 45-359 (387)
76 TIGR00603 rad25 DNA repair hel 99.9 3E-25 6.4E-30 271.7 25.3 299 392-719 254-627 (732)
77 TIGR03714 secA2 accessory Sec 99.9 6.5E-25 1.4E-29 268.7 27.9 307 380-707 58-539 (762)
78 TIGR01054 rgy reverse gyrase. 99.9 4E-25 8.7E-30 285.9 27.5 280 379-677 65-409 (1171)
79 TIGR00963 secA preprotein tran 99.9 5.6E-24 1.2E-28 259.1 32.5 308 380-707 44-519 (745)
80 KOG0947 Cytoplasmic exosomal R 99.9 9.6E-25 2.1E-29 260.9 23.4 308 388-725 293-746 (1248)
81 TIGR00595 priA primosomal prot 99.9 2.4E-24 5.2E-29 259.2 22.1 287 412-713 1-389 (505)
82 COG1200 RecG RecG-like helicas 99.9 5.5E-23 1.2E-27 244.3 27.4 309 375-706 245-592 (677)
83 KOG0950 DNA polymerase theta/e 99.9 1.4E-23 3E-28 253.6 19.3 320 379-719 209-625 (1008)
84 PRK04914 ATP-dependent helicas 99.9 1.2E-22 2.6E-27 256.5 28.4 314 393-718 152-619 (956)
85 COG1061 SSL2 DNA or RNA helica 99.9 5E-23 1.1E-27 244.8 22.4 269 392-691 35-375 (442)
86 KOG0948 Nuclear exosomal RNA h 99.9 1.4E-23 3.1E-28 245.8 16.0 299 393-715 129-550 (1041)
87 COG4581 Superfamily II RNA hel 99.9 2.6E-23 5.7E-28 258.6 18.8 313 389-728 116-563 (1041)
88 COG1197 Mfd Transcription-repa 99.9 2.1E-22 4.5E-27 250.5 26.3 310 373-706 575-914 (1139)
89 PRK11131 ATP-dependent RNA hel 99.9 1.2E-22 2.6E-27 259.4 23.8 280 399-709 80-415 (1294)
90 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.5E-21 3.3E-26 250.3 22.4 283 399-709 73-408 (1283)
91 PRK09694 helicase Cas3; Provis 99.9 1.7E-20 3.7E-25 235.7 25.7 296 389-694 282-664 (878)
92 cd00268 DEADc DEAD-box helicas 99.9 6.7E-21 1.5E-25 202.9 17.7 183 374-572 3-197 (203)
93 KOG0951 RNA helicase BRR2, DEA 99.8 1.1E-20 2.3E-25 231.1 16.2 336 391-764 1141-1550(1674)
94 PLN03142 Probable chromatin-re 99.8 8.4E-20 1.8E-24 231.5 24.7 292 393-702 169-594 (1033)
95 PRK12906 secA preprotein trans 99.8 1.4E-19 3E-24 222.6 25.6 315 379-707 67-555 (796)
96 KOG0349 Putative DEAD-box RNA 99.8 5.4E-21 1.2E-25 212.8 11.7 256 436-703 289-613 (725)
97 PF00270 DEAD: DEAD/DEAH box h 99.8 3.8E-20 8.3E-25 190.5 14.5 156 395-563 1-166 (169)
98 PRK11448 hsdR type I restricti 99.8 3E-19 6.4E-24 230.3 25.4 305 392-706 412-816 (1123)
99 PRK12904 preprotein translocas 99.8 8.2E-18 1.8E-22 207.9 31.6 308 380-707 69-575 (830)
100 PRK13104 secA preprotein trans 99.8 8.4E-18 1.8E-22 207.9 29.7 313 380-707 70-589 (896)
101 KOG0949 Predicted helicase, DE 99.8 5.4E-19 1.2E-23 212.3 18.4 154 393-562 511-674 (1330)
102 COG4098 comFA Superfamily II D 99.8 1.1E-17 2.4E-22 183.6 25.4 280 393-706 97-416 (441)
103 PRK12899 secA preprotein trans 99.8 3.3E-17 7.1E-22 202.3 29.4 128 390-527 86-228 (970)
104 KOG0385 Chromatin remodeling c 99.7 4.5E-17 9.7E-22 192.8 20.9 292 392-701 166-593 (971)
105 PRK13107 preprotein translocas 99.7 3.5E-16 7.6E-21 193.1 28.2 314 380-707 70-593 (908)
106 COG1203 CRISPR-associated heli 99.7 9.5E-17 2.1E-21 201.9 18.6 301 394-703 196-548 (733)
107 TIGR00631 uvrb excinuclease AB 99.7 2.9E-15 6.3E-20 185.2 28.9 101 606-707 450-555 (655)
108 COG1198 PriA Primosomal protei 99.7 1.3E-15 2.8E-20 187.2 25.5 308 392-715 197-613 (730)
109 COG1643 HrpA HrpA-like helicas 99.7 2.7E-16 5.9E-21 195.6 19.1 286 397-708 54-390 (845)
110 KOG0922 DEAH-box RNA helicase 99.7 3.8E-16 8.2E-21 184.8 18.8 280 397-708 55-393 (674)
111 PRK05298 excinuclease ABC subu 99.7 3.3E-14 7.1E-19 176.8 30.9 100 607-707 455-559 (652)
112 COG1110 Reverse gyrase [DNA re 99.6 1.4E-14 2.9E-19 177.1 24.1 282 378-677 68-417 (1187)
113 PRK12900 secA preprotein trans 99.6 4.8E-14 1.1E-18 175.0 27.0 96 610-707 610-713 (1025)
114 KOG0384 Chromodomain-helicase 99.6 5.5E-15 1.2E-19 182.6 17.6 295 392-701 369-805 (1373)
115 TIGR00348 hsdR type I site-spe 99.6 2.6E-14 5.6E-19 178.3 23.4 151 394-561 239-404 (667)
116 PF00271 Helicase_C: Helicase 99.6 2.3E-15 4.9E-20 136.2 8.6 76 618-693 3-78 (78)
117 KOG4150 Predicted ATP-dependen 99.6 4.3E-15 9.3E-20 170.3 11.9 315 390-711 283-648 (1034)
118 KOG0953 Mitochondrial RNA heli 99.6 1.1E-14 2.4E-19 168.2 14.2 275 409-717 192-488 (700)
119 KOG0923 mRNA splicing factor A 99.6 4.3E-14 9.4E-19 165.5 19.1 289 392-707 264-608 (902)
120 KOG0924 mRNA splicing factor A 99.6 3.4E-14 7.4E-19 166.3 18.1 299 394-719 357-709 (1042)
121 smart00487 DEXDc DEAD-like hel 99.6 4.8E-14 1.1E-18 146.5 16.7 168 389-572 4-183 (201)
122 KOG0920 ATP-dependent RNA heli 99.6 4.5E-14 9.8E-19 175.3 18.6 288 394-709 174-548 (924)
123 TIGR01407 dinG_rel DnaQ family 99.5 3.6E-13 7.7E-18 172.8 24.6 78 389-467 242-333 (850)
124 PRK12326 preprotein translocas 99.5 7.7E-13 1.7E-17 160.6 25.9 137 379-527 65-211 (764)
125 COG0556 UvrB Helicase subunit 99.5 1.1E-12 2.5E-17 151.5 25.8 152 549-703 386-555 (663)
126 PF09382 RQC: RQC domain; Int 99.5 1.1E-14 2.4E-19 140.1 7.3 105 795-905 1-105 (106)
127 KOG0389 SNF2 family DNA-depend 99.5 6.8E-13 1.5E-17 158.5 21.0 297 390-701 397-882 (941)
128 KOG0390 DNA repair protein, SN 99.5 2E-12 4.2E-17 158.6 24.3 293 393-701 238-701 (776)
129 PRK13103 secA preprotein trans 99.5 3.7E-12 8.1E-17 158.1 24.8 136 380-527 70-215 (913)
130 KOG0387 Transcription-coupled 99.5 1.6E-12 3.5E-17 155.6 18.6 293 392-701 204-652 (923)
131 PF00570 HRDC: HRDC domain Blo 99.4 1.1E-13 2.3E-18 122.4 6.3 67 951-1019 2-68 (68)
132 COG4096 HsdR Type I site-speci 99.4 1.2E-12 2.5E-17 158.6 16.3 289 392-707 164-547 (875)
133 COG4889 Predicted helicase [Ge 99.4 8E-13 1.7E-17 157.9 14.5 297 391-693 159-573 (1518)
134 PRK12903 secA preprotein trans 99.4 3.1E-11 6.7E-16 148.6 28.0 306 380-706 66-540 (925)
135 PF04851 ResIII: Type III rest 99.4 4.2E-13 9.2E-18 139.3 9.6 154 393-561 3-184 (184)
136 KOG1123 RNA polymerase II tran 99.4 1.4E-12 3E-17 148.9 12.7 286 392-703 301-648 (776)
137 KOG0926 DEAH-box RNA helicase 99.4 1.1E-12 2.5E-17 156.0 12.2 83 623-706 605-705 (1172)
138 PRK07246 bifunctional ATP-depe 99.4 2E-11 4.3E-16 155.3 24.3 77 390-467 243-330 (820)
139 smart00490 HELICc helicase sup 99.4 1.3E-12 2.7E-17 117.6 9.2 75 619-693 8-82 (82)
140 cd00079 HELICc Helicase superf 99.3 4.5E-12 9.7E-17 124.4 9.6 82 620-701 50-131 (131)
141 cd00046 DEXDc DEAD-like helica 99.3 6.8E-12 1.5E-16 122.7 10.7 136 409-559 1-144 (144)
142 smart00341 HRDC Helicase and R 99.3 8.5E-12 1.8E-16 114.0 9.6 75 951-1027 5-79 (81)
143 CHL00122 secA preprotein trans 99.3 4.9E-10 1.1E-14 139.0 27.9 136 380-527 64-209 (870)
144 KOG0386 Chromatin remodeling c 99.3 2.8E-11 6E-16 148.0 16.1 298 392-706 393-837 (1157)
145 PRK12902 secA preprotein trans 99.3 1.1E-09 2.5E-14 135.5 26.9 136 380-527 73-218 (939)
146 PRK08074 bifunctional ATP-depe 99.2 5.9E-10 1.3E-14 144.2 24.5 76 392-467 256-346 (928)
147 KOG1000 Chromatin remodeling p 99.2 2.3E-10 5E-15 131.2 16.9 288 392-702 197-598 (689)
148 KOG1002 Nucleotide excision re 99.2 7.2E-10 1.6E-14 126.8 18.5 87 618-704 658-748 (791)
149 PRK14873 primosome assembly pr 99.1 4.2E-09 9.2E-14 130.8 23.5 135 417-565 169-309 (665)
150 KOG0952 DNA/RNA helicase MER3/ 99.1 1.4E-11 3.1E-16 151.0 0.4 167 392-576 926-1108(1230)
151 KOG0388 SNF2 family DNA-depend 99.1 2E-09 4.4E-14 127.1 17.1 81 620-700 1066-1147(1185)
152 KOG0392 SNF2 family DNA-depend 99.1 2.7E-09 5.9E-14 132.6 18.3 287 393-700 975-1447(1549)
153 KOG0925 mRNA splicing factor A 99.1 4.3E-09 9.3E-14 120.7 18.2 303 374-707 29-389 (699)
154 TIGR02562 cas3_yersinia CRISPR 99.0 3.1E-09 6.7E-14 133.5 17.7 69 623-694 787-881 (1110)
155 PRK12901 secA preprotein trans 99.0 2.6E-08 5.7E-13 124.8 23.4 125 394-527 168-303 (1112)
156 KOG4439 RNA polymerase II tran 99.0 3.9E-09 8.4E-14 125.5 15.2 84 618-701 766-852 (901)
157 COG1199 DinG Rad3-related DNA 98.9 1E-07 2.2E-12 120.0 23.9 70 386-455 8-85 (654)
158 KOG0391 SNF2 family DNA-depend 98.8 1.8E-07 3.8E-12 115.7 21.0 161 393-571 615-787 (1958)
159 PF00176 SNF2_N: SNF2 family N 98.7 4.4E-08 9.6E-13 110.2 10.7 160 397-574 1-187 (299)
160 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.5E-07 3.3E-12 115.9 12.3 53 403-455 11-68 (636)
161 COG0553 HepA Superfamily II DN 98.6 1.1E-06 2.5E-11 113.4 19.1 80 622-701 735-816 (866)
162 KOG0921 Dosage compensation co 98.6 1.4E-07 3.1E-12 114.6 9.7 354 325-710 321-779 (1282)
163 PF07517 SecA_DEAD: SecA DEAD- 98.5 1.3E-06 2.7E-11 97.5 12.7 136 380-527 65-210 (266)
164 COG0653 SecA Preprotein transl 98.4 6.2E-06 1.3E-10 102.8 19.0 135 381-527 69-213 (822)
165 KOG1015 Transcription regulato 98.4 2.3E-06 5E-11 104.6 14.0 78 624-701 1190-1271(1567)
166 PF07652 Flavi_DEAD: Flaviviru 98.4 1.9E-07 4.1E-12 94.0 3.8 133 408-563 4-140 (148)
167 PF02399 Herpes_ori_bp: Origin 98.3 4.9E-06 1.1E-10 103.1 13.7 270 410-705 51-388 (824)
168 PF06862 DUF1253: Protein of u 98.0 0.00037 8.1E-09 82.7 21.7 229 483-714 129-424 (442)
169 smart00489 DEXDc3 DEAD-like he 98.0 3E-05 6.5E-10 88.2 11.3 90 389-480 5-107 (289)
170 smart00488 DEXDc2 DEAD-like he 98.0 3E-05 6.5E-10 88.2 11.3 90 389-480 5-107 (289)
171 COG0610 Type I site-specific r 97.9 0.0002 4.4E-09 93.3 17.5 139 409-563 274-417 (962)
172 PRK15483 type III restriction- 97.9 9E-05 1.9E-09 94.5 12.9 45 648-692 501-545 (986)
173 PRK10829 ribonuclease D; Provi 97.8 3.5E-05 7.5E-10 90.2 8.0 71 951-1024 214-284 (373)
174 TIGR01388 rnd ribonuclease D. 97.8 4.1E-05 8.8E-10 89.8 8.2 71 951-1024 210-280 (367)
175 KOG2340 Uncharacterized conser 97.5 0.00096 2.1E-08 78.7 13.7 96 619-714 573-677 (698)
176 KOG1802 RNA helicase nonsense 97.3 0.00083 1.8E-08 80.9 10.2 79 387-465 404-486 (935)
177 PF12340 DUF3638: Protein of u 97.2 0.0069 1.5E-07 66.2 14.9 152 368-528 3-186 (229)
178 COG3587 Restriction endonuclea 97.2 0.0029 6.4E-08 78.5 12.5 46 647-692 482-527 (985)
179 TIGR00604 rad3 DNA repair heli 97.1 0.0012 2.7E-08 84.0 9.2 69 388-456 5-83 (705)
180 PRK11747 dinG ATP-dependent DN 97.1 0.0014 3E-08 83.3 9.4 58 393-450 25-95 (697)
181 PF11408 Helicase_Sgs1: Sgs1 R 97.0 0.0014 3E-08 59.8 5.8 60 951-1012 6-65 (80)
182 KOG1803 DNA helicase [Replicat 96.9 0.0034 7.4E-08 75.7 10.2 63 392-454 184-250 (649)
183 PF13086 AAA_11: AAA domain; P 96.8 0.0023 5E-08 68.9 7.3 63 393-455 1-75 (236)
184 KOG1016 Predicted DNA helicase 96.5 0.05 1.1E-06 66.8 15.6 78 629-706 768-848 (1387)
185 KOG1805 DNA replication helica 96.3 0.014 3E-07 73.6 9.9 128 392-528 668-810 (1100)
186 PF02562 PhoH: PhoH-like prote 96.3 0.0032 7E-08 68.0 3.8 54 392-445 3-61 (205)
187 PF13872 AAA_34: P-loop contai 96.2 0.015 3.2E-07 65.9 8.4 161 393-564 37-225 (303)
188 PF13245 AAA_19: Part of AAA d 96.2 0.011 2.4E-07 53.9 6.0 53 401-453 2-62 (76)
189 PRK11747 dinG ATP-dependent DN 96.1 0.081 1.8E-06 67.5 15.2 166 550-719 457-689 (697)
190 COG0349 Rnd Ribonuclease D [Tr 95.6 0.028 6E-07 65.0 7.4 71 951-1024 210-280 (361)
191 PF13401 AAA_22: AAA domain; P 95.5 0.011 2.4E-07 58.2 3.4 18 408-425 4-21 (131)
192 PF05970 PIF1: PIF1-like helic 95.4 0.017 3.7E-07 68.0 5.3 51 393-443 1-60 (364)
193 TIGR00376 DNA helicase, putati 95.4 0.054 1.2E-06 68.3 9.8 75 392-466 156-234 (637)
194 PRK12723 flagellar biosynthesi 95.3 0.14 3E-06 60.8 12.4 125 408-572 174-310 (388)
195 KOG1132 Helicase of the DEAD s 95.2 0.055 1.2E-06 68.0 8.8 38 393-430 21-62 (945)
196 PF09848 DUF2075: Uncharacteri 95.1 0.043 9.4E-07 64.3 7.2 46 410-455 3-53 (352)
197 PRK10875 recD exonuclease V su 95.0 0.13 2.9E-06 64.4 11.6 75 379-453 137-219 (615)
198 PF13871 Helicase_C_4: Helicas 95.0 0.064 1.4E-06 60.5 7.9 57 639-695 52-116 (278)
199 PF00448 SRP54: SRP54-type pro 94.9 0.16 3.4E-06 54.7 10.4 127 411-571 4-137 (196)
200 smart00492 HELICc3 helicase su 94.7 0.2 4.2E-06 51.2 9.8 52 626-677 25-79 (141)
201 cd00009 AAA The AAA+ (ATPases 94.7 0.13 2.9E-06 50.3 8.5 18 408-425 19-36 (151)
202 PRK11889 flhF flagellar biosyn 94.5 0.38 8.2E-06 57.0 12.7 18 409-426 242-259 (436)
203 KOG1131 RNA polymerase II tran 94.5 0.29 6.3E-06 58.5 11.7 68 388-455 11-89 (755)
204 PF00580 UvrD-helicase: UvrD/R 94.4 0.063 1.4E-06 60.7 6.2 60 394-455 1-67 (315)
205 smart00382 AAA ATPases associa 94.4 0.093 2E-06 50.7 6.4 38 408-445 2-42 (148)
206 smart00491 HELICc2 helicase su 94.2 0.23 4.9E-06 50.8 9.0 76 627-702 23-136 (142)
207 TIGR00604 rad3 DNA repair heli 94.2 0.45 9.7E-06 61.1 13.7 43 635-677 565-615 (705)
208 PF13307 Helicase_C_2: Helicas 94.1 0.13 2.8E-06 53.9 7.3 70 634-703 45-148 (167)
209 PRK06526 transposase; Provisio 94.1 0.13 2.8E-06 57.6 7.8 22 405-426 95-116 (254)
210 PRK08727 hypothetical protein; 93.9 0.24 5.1E-06 54.8 9.2 15 410-424 43-57 (233)
211 PRK14974 cell division protein 93.8 0.48 1E-05 55.3 11.8 53 514-570 222-275 (336)
212 PRK08181 transposase; Validate 93.7 0.23 5E-06 56.1 8.7 42 406-447 104-147 (269)
213 KOG0383 Predicted helicase [Ge 93.6 0.061 1.3E-06 67.2 4.3 171 392-576 294-491 (696)
214 TIGR01448 recD_rel helicase, p 93.6 0.096 2.1E-06 67.1 6.1 60 387-447 318-382 (720)
215 PRK08084 DNA replication initi 93.5 0.59 1.3E-05 51.7 11.5 17 408-424 45-61 (235)
216 KOG1001 Helicase-like transcri 93.4 0.24 5.2E-06 62.6 8.9 137 410-573 154-306 (674)
217 TIGR01447 recD exodeoxyribonuc 93.4 0.29 6.2E-06 61.3 9.6 59 395-453 147-213 (586)
218 PF13604 AAA_30: AAA domain; P 93.3 0.22 4.7E-06 53.6 7.4 56 393-448 1-61 (196)
219 PRK06893 DNA replication initi 93.2 0.21 4.5E-06 55.0 7.3 56 514-572 91-151 (229)
220 cd01122 GP4d_helicase GP4d_hel 93.0 0.65 1.4E-05 52.1 10.9 120 405-528 27-154 (271)
221 COG1419 FlhF Flagellar GTP-bin 92.9 0.75 1.6E-05 54.4 11.4 126 407-574 202-338 (407)
222 PRK05703 flhF flagellar biosyn 92.8 0.85 1.8E-05 55.0 12.2 56 514-573 299-356 (424)
223 PF05621 TniB: Bacterial TniB 92.8 0.32 6.9E-06 55.5 7.9 17 409-425 62-78 (302)
224 PF03796 DnaB_C: DnaB-like hel 92.6 0.6 1.3E-05 52.2 10.0 145 408-559 19-180 (259)
225 TIGR03015 pepcterm_ATPase puta 92.5 0.53 1.1E-05 52.5 9.3 35 394-428 24-63 (269)
226 cd01124 KaiC KaiC is a circadi 92.4 0.36 7.8E-06 50.6 7.5 48 411-459 2-52 (187)
227 cd01126 TraG_VirD4 The TraG/Tr 92.2 0.12 2.5E-06 61.4 3.9 55 410-464 1-56 (384)
228 PRK12377 putative replication 92.2 0.7 1.5E-05 51.7 9.8 40 409-448 102-143 (248)
229 cd01120 RecA-like_NTPases RecA 91.9 0.89 1.9E-05 45.7 9.4 35 411-445 2-39 (165)
230 PRK14956 DNA polymerase III su 91.8 0.62 1.3E-05 56.6 9.2 19 411-429 43-61 (484)
231 KOG0298 DEAD box-containing he 91.6 0.16 3.5E-06 66.1 4.2 149 408-571 374-561 (1394)
232 PF02534 T4SS-DNA_transf: Type 91.6 0.17 3.7E-06 61.5 4.4 56 409-464 45-101 (469)
233 PRK06921 hypothetical protein; 91.6 1.3 2.7E-05 50.2 11.0 17 408-424 117-133 (266)
234 PF13173 AAA_14: AAA domain 91.3 0.65 1.4E-05 46.1 7.5 47 515-569 62-108 (128)
235 PRK07952 DNA replication prote 91.2 1.2 2.7E-05 49.6 10.3 38 409-446 100-139 (244)
236 PF00004 AAA: ATPase family as 91.2 0.59 1.3E-05 45.6 7.0 17 411-427 1-17 (132)
237 KOG2206 Exosome 3'-5' exoribon 90.9 0.8 1.7E-05 55.6 8.7 72 951-1025 407-479 (687)
238 cd00984 DnaB_C DnaB helicase C 90.8 1.5 3.3E-05 48.2 10.5 114 407-527 12-136 (242)
239 PTZ00112 origin recognition co 90.8 1.2 2.5E-05 57.4 10.3 22 847-869 1065-1086(1164)
240 PRK00411 cdc6 cell division co 90.8 1.7 3.7E-05 51.4 11.6 22 847-868 336-357 (394)
241 PRK10867 signal recognition pa 90.7 2.4 5.3E-05 51.2 12.8 54 410-463 102-162 (433)
242 PRK12422 chromosomal replicati 90.6 0.84 1.8E-05 55.4 8.9 15 410-424 143-157 (445)
243 PRK14722 flhF flagellar biosyn 90.4 1.5 3.2E-05 51.9 10.4 20 407-426 136-155 (374)
244 TIGR01425 SRP54_euk signal rec 90.4 2.5 5.4E-05 50.9 12.4 56 410-465 102-163 (429)
245 PF00308 Bac_DnaA: Bacterial d 90.4 1 2.3E-05 49.3 8.6 13 411-423 37-49 (219)
246 PRK12726 flagellar biosynthesi 90.4 2.1 4.6E-05 50.7 11.5 19 407-425 205-223 (407)
247 PRK05973 replicative DNA helic 90.3 1.8 3.8E-05 48.2 10.3 84 374-459 22-117 (237)
248 PLN03025 replication factor C 90.3 1.6 3.4E-05 50.5 10.5 49 515-569 100-148 (319)
249 PF00633 HHH: Helix-hairpin-he 90.2 0.25 5.3E-06 37.0 2.4 22 988-1009 4-25 (30)
250 PRK07003 DNA polymerase III su 90.1 1.3 2.9E-05 56.3 10.1 45 514-564 119-163 (830)
251 PRK12323 DNA polymerase III su 90.1 1.1 2.5E-05 56.0 9.5 51 513-569 123-173 (700)
252 PRK05707 DNA polymerase III su 90.1 1.2 2.5E-05 52.0 9.2 33 394-426 4-40 (328)
253 PRK08116 hypothetical protein; 90.1 2.8 6E-05 47.5 11.9 17 410-426 116-132 (268)
254 PRK14960 DNA polymerase III su 89.9 2 4.4E-05 54.0 11.4 20 410-429 39-58 (702)
255 TIGR02768 TraA_Ti Ti-type conj 89.7 0.9 2E-05 58.6 8.6 55 392-446 351-409 (744)
256 PRK10536 hypothetical protein; 89.7 0.67 1.5E-05 51.9 6.5 56 390-445 56-116 (262)
257 TIGR03117 cas_csf4 CRISPR-asso 89.6 3.4 7.3E-05 52.2 13.2 50 626-677 498-561 (636)
258 TIGR02928 orc1/cdc6 family rep 89.5 1.2 2.6E-05 52.1 8.9 24 846-869 327-350 (365)
259 KOG0989 Replication factor C, 89.5 0.59 1.3E-05 53.1 5.8 35 397-431 40-80 (346)
260 PRK05642 DNA replication initi 89.4 1.2 2.6E-05 49.3 8.2 16 409-424 46-61 (234)
261 TIGR03600 phage_DnaB phage rep 89.4 1.6 3.5E-05 52.5 10.0 115 407-527 193-318 (421)
262 PRK14949 DNA polymerase III su 89.3 1.3 2.9E-05 57.2 9.4 19 411-429 41-59 (944)
263 TIGR00064 ftsY signal recognit 89.3 4.3 9.4E-05 46.0 12.7 52 410-461 74-131 (272)
264 TIGR03877 thermo_KaiC_1 KaiC d 89.1 1.3 2.8E-05 49.0 8.3 51 408-459 21-74 (237)
265 PRK04195 replication factor C 89.0 1.4 2.9E-05 54.1 9.1 20 408-427 39-58 (482)
266 PRK13897 type IV secretion sys 88.8 0.38 8.3E-06 60.2 4.2 56 409-464 159-215 (606)
267 PRK04296 thymidine kinase; Pro 88.7 0.54 1.2E-05 50.3 4.7 33 409-441 3-38 (190)
268 PRK14964 DNA polymerase III su 88.6 1.7 3.7E-05 53.2 9.3 20 410-429 37-56 (491)
269 PRK06731 flhF flagellar biosyn 88.4 5.5 0.00012 45.2 12.7 21 407-427 74-94 (270)
270 PRK05595 replicative DNA helic 88.3 1.9 4.2E-05 52.2 9.7 117 408-528 201-325 (444)
271 PRK05748 replicative DNA helic 88.2 3.1 6.7E-05 50.6 11.3 114 407-527 202-327 (448)
272 PRK08760 replicative DNA helic 88.2 1.9 4.1E-05 52.9 9.4 115 408-528 229-353 (476)
273 COG3421 Uncharacterized protei 88.1 0.68 1.5E-05 56.4 5.4 78 484-562 80-168 (812)
274 TIGR00959 ffh signal recogniti 88.1 5.4 0.00012 48.2 13.0 55 410-464 101-162 (428)
275 PRK00149 dnaA chromosomal repl 88.0 1.3 2.9E-05 53.7 8.1 16 410-425 150-165 (450)
276 PRK12724 flagellar biosynthesi 88.0 3.6 7.9E-05 49.4 11.3 46 409-454 224-275 (432)
277 PRK08903 DnaA regulatory inact 88.0 1.2 2.6E-05 48.7 6.9 17 408-424 42-58 (227)
278 COG1474 CDC6 Cdc6-related prot 88.0 3.1 6.8E-05 49.2 10.8 29 500-528 109-137 (366)
279 PRK11823 DNA repair protein Ra 87.9 2.3 5E-05 51.6 9.9 50 408-458 80-132 (446)
280 PRK13889 conjugal transfer rel 87.9 1.3 2.9E-05 58.3 8.3 54 393-446 346-403 (988)
281 PRK10416 signal recognition pa 87.8 5.8 0.00013 46.1 12.7 55 408-462 114-174 (318)
282 PRK13850 type IV secretion sys 87.8 0.56 1.2E-05 59.4 4.8 57 408-464 139-196 (670)
283 TIGR02881 spore_V_K stage V sp 87.7 1.9 4.1E-05 48.3 8.5 20 409-428 43-62 (261)
284 PRK12402 replication factor C 87.7 2.2 4.7E-05 49.2 9.2 18 410-427 38-55 (337)
285 PRK14962 DNA polymerase III su 87.6 1.6 3.5E-05 53.3 8.4 18 411-428 39-56 (472)
286 PF06745 KaiC: KaiC; InterPro 87.6 1.4 3E-05 48.1 7.2 101 408-526 19-127 (226)
287 PRK13833 conjugal transfer pro 87.2 1.4 3E-05 51.2 7.2 53 393-445 128-186 (323)
288 PRK12727 flagellar biosynthesi 87.2 4.3 9.4E-05 50.0 11.5 19 407-425 349-367 (559)
289 TIGR03499 FlhF flagellar biosy 86.9 2.3 5E-05 48.5 8.7 19 407-425 193-211 (282)
290 PRK07764 DNA polymerase III su 86.7 2 4.3E-05 55.9 8.9 43 513-561 119-161 (824)
291 cd03115 SRP The signal recogni 86.6 8.3 0.00018 40.1 12.1 42 411-452 3-49 (173)
292 PRK09165 replicative DNA helic 86.4 2.8 6E-05 51.7 9.6 118 408-528 217-355 (497)
293 PRK13826 Dtr system oriT relax 86.4 2.2 4.9E-05 56.7 9.2 67 392-462 380-451 (1102)
294 TIGR00362 DnaA chromosomal rep 86.0 1.4 3.1E-05 52.6 6.7 16 410-425 138-153 (405)
295 PRK07994 DNA polymerase III su 86.0 3.4 7.4E-05 52.3 10.2 45 513-563 118-162 (647)
296 PRK08691 DNA polymerase III su 86.0 4.7 0.0001 51.2 11.3 20 410-429 40-59 (709)
297 PRK06995 flhF flagellar biosyn 85.8 3.9 8.4E-05 50.1 10.2 55 408-462 256-318 (484)
298 PRK10689 transcription-repair 85.8 3 6.5E-05 56.2 10.1 83 430-525 806-890 (1147)
299 PRK05636 replicative DNA helic 85.7 3.2 7E-05 51.2 9.6 116 408-527 265-388 (505)
300 PHA02533 17 large terminase pr 85.7 5.6 0.00012 49.4 11.7 63 393-455 59-126 (534)
301 PRK14959 DNA polymerase III su 85.7 4.7 0.0001 50.7 11.1 20 410-429 40-59 (624)
302 PRK08769 DNA polymerase III su 85.6 4.7 0.0001 46.8 10.4 35 392-426 3-44 (319)
303 PRK14721 flhF flagellar biosyn 85.5 6 0.00013 47.6 11.5 56 407-462 190-253 (420)
304 TIGR00665 DnaB replicative DNA 85.4 5.5 0.00012 48.1 11.4 114 407-527 194-318 (434)
305 cd01128 rho_factor Transcripti 85.3 8.1 0.00017 43.3 11.7 19 407-425 15-33 (249)
306 PRK08506 replicative DNA helic 85.2 3.4 7.5E-05 50.5 9.6 142 407-557 191-350 (472)
307 PRK14958 DNA polymerase III su 85.1 2.7 5.9E-05 51.9 8.6 19 411-429 41-59 (509)
308 cd01394 radB RadB. The archaea 85.1 4 8.7E-05 44.2 9.1 33 408-440 19-54 (218)
309 PRK04328 hypothetical protein; 85.1 3.9 8.5E-05 45.6 9.2 50 408-458 23-75 (249)
310 PRK13822 conjugal transfer cou 85.0 0.96 2.1E-05 57.2 4.8 58 408-465 224-282 (641)
311 PRK14952 DNA polymerase III su 85.0 3.7 8.1E-05 51.5 9.8 50 513-568 117-166 (584)
312 cd01121 Sms Sms (bacterial rad 84.9 3.7 7.9E-05 48.8 9.3 35 408-442 82-119 (372)
313 TIGR03420 DnaA_homol_Hda DnaA 84.9 1.9 4.2E-05 46.7 6.5 19 408-426 38-56 (226)
314 PRK06964 DNA polymerase III su 84.8 3 6.6E-05 48.8 8.4 51 513-569 131-181 (342)
315 COG4962 CpaF Flp pilus assembl 84.8 1.7 3.8E-05 50.3 6.2 58 388-445 152-212 (355)
316 cd00983 recA RecA is a bacter 84.8 4.5 9.7E-05 47.1 9.7 88 408-526 55-145 (325)
317 PRK14961 DNA polymerase III su 84.8 3 6.5E-05 49.2 8.5 18 411-428 41-58 (363)
318 PRK00771 signal recognition pa 84.7 8.3 0.00018 46.8 12.3 52 409-460 96-153 (437)
319 TIGR01242 26Sp45 26S proteasom 84.7 10 0.00022 44.7 13.0 22 408-429 156-177 (364)
320 PRK11054 helD DNA helicase IV; 84.6 2.1 4.5E-05 54.8 7.5 78 377-456 177-264 (684)
321 PRK10919 ATP-dependent DNA hel 84.5 1.4 3.1E-05 56.2 6.1 62 393-456 2-70 (672)
322 PF05127 Helicase_RecD: Helica 84.5 1.1 2.4E-05 47.6 4.2 122 412-562 1-126 (177)
323 TIGR03878 thermo_KaiC_2 KaiC d 84.4 7.3 0.00016 43.8 11.1 34 407-440 35-71 (259)
324 PHA02544 44 clamp loader, smal 84.4 7.4 0.00016 44.6 11.4 51 514-569 100-150 (316)
325 PRK08840 replicative DNA helic 84.2 5.7 0.00012 48.6 10.7 116 407-528 216-343 (464)
326 PRK14087 dnaA chromosomal repl 84.2 2.9 6.3E-05 50.8 8.2 15 410-424 143-157 (450)
327 PF08423 Rad51: Rad51; InterP 84.0 3.9 8.5E-05 45.9 8.6 106 400-526 25-145 (256)
328 PF05876 Terminase_GpA: Phage 84.0 2.1 4.5E-05 53.5 7.0 59 393-451 16-80 (557)
329 PRK06645 DNA polymerase III su 84.0 4.1 9E-05 50.2 9.4 20 410-429 45-64 (507)
330 PRK14723 flhF flagellar biosyn 83.9 8 0.00017 49.8 12.1 54 408-461 185-246 (767)
331 PRK14088 dnaA chromosomal repl 83.9 3.8 8.2E-05 49.7 9.1 16 410-425 132-147 (440)
332 TIGR02767 TraG-Ti Ti-type conj 83.9 1.2 2.7E-05 56.0 5.0 57 409-465 212-270 (623)
333 PRK14951 DNA polymerase III su 83.8 3.8 8.3E-05 51.6 9.2 45 513-563 123-167 (618)
334 PRK08533 flagellar accessory p 83.8 4.8 0.0001 44.4 9.1 51 407-458 23-76 (230)
335 PRK09112 DNA polymerase III su 83.7 6.7 0.00015 46.2 10.7 45 513-563 140-184 (351)
336 PRK13341 recombination factor 83.6 8.8 0.00019 49.5 12.5 20 410-429 54-73 (725)
337 PRK09354 recA recombinase A; P 83.6 6.4 0.00014 46.3 10.3 88 408-526 60-150 (349)
338 PHA02542 41 41 helicase; Provi 83.5 5.6 0.00012 48.7 10.3 33 408-440 190-225 (473)
339 TIGR02760 TraI_TIGR conjugativ 83.5 2.3 4.9E-05 60.4 7.8 65 392-460 1018-1091(1960)
340 PRK06871 DNA polymerase III su 83.4 5.9 0.00013 46.2 9.9 80 484-569 72-156 (325)
341 TIGR02782 TrbB_P P-type conjug 83.3 3 6.5E-05 48.0 7.5 53 393-445 116-174 (299)
342 PF01695 IstB_IS21: IstB-like 83.1 1.5 3.4E-05 46.4 4.7 41 407-447 46-88 (178)
343 PRK13894 conjugal transfer ATP 83.1 2.8 6E-05 48.7 7.1 53 393-445 132-190 (319)
344 COG1484 DnaC DNA replication p 83.1 2.1 4.7E-05 48.0 6.0 47 407-453 104-152 (254)
345 PRK13876 conjugal transfer cou 83.0 1.2 2.6E-05 56.5 4.4 55 409-464 145-200 (663)
346 PRK05896 DNA polymerase III su 82.9 3.6 7.9E-05 51.5 8.4 20 410-429 40-59 (605)
347 KOG0738 AAA+-type ATPase [Post 82.8 6 0.00013 46.6 9.4 17 409-425 246-262 (491)
348 TIGR02237 recomb_radB DNA repa 82.8 6.6 0.00014 42.2 9.5 35 408-442 12-49 (209)
349 COG1875 NYN ribonuclease and A 82.7 1.7 3.7E-05 50.6 5.0 61 386-446 221-289 (436)
350 PRK07940 DNA polymerase III su 82.7 8.8 0.00019 46.0 11.3 79 485-569 84-166 (394)
351 PRK06321 replicative DNA helic 82.5 7.2 0.00016 47.8 10.7 117 408-528 226-350 (472)
352 TIGR00596 rad1 DNA repair prot 82.5 2 4.3E-05 55.7 6.2 85 485-578 7-96 (814)
353 TIGR01075 uvrD DNA helicase II 82.4 1.8 4E-05 55.6 5.9 63 392-456 3-72 (715)
354 KOG0739 AAA+-type ATPase [Post 82.4 9.8 0.00021 43.4 10.6 117 402-565 155-283 (439)
355 PRK09376 rho transcription ter 82.1 5.7 0.00012 47.3 9.2 29 396-424 154-185 (416)
356 TIGR02655 circ_KaiC circadian 82.0 3.5 7.7E-05 50.6 7.9 100 408-526 263-365 (484)
357 COG1219 ClpX ATP-dependent pro 82.0 0.82 1.8E-05 52.2 2.1 20 407-426 96-115 (408)
358 PRK14965 DNA polymerase III su 81.9 7.5 0.00016 48.8 10.8 18 411-428 41-58 (576)
359 TIGR00767 rho transcription te 81.6 6.2 0.00013 47.1 9.3 21 407-427 167-187 (415)
360 PRK11773 uvrD DNA-dependent he 81.4 2.2 4.8E-05 55.0 6.0 63 392-456 8-77 (721)
361 PRK13851 type IV secretion sys 81.2 2.4 5.2E-05 49.7 5.7 48 399-446 152-202 (344)
362 PRK08939 primosomal protein Dn 81.2 3 6.5E-05 48.1 6.5 17 408-424 156-172 (306)
363 TIGR00580 mfd transcription-re 80.9 14 0.00031 48.9 13.2 83 430-525 657-741 (926)
364 PRK06904 replicative DNA helic 80.8 13 0.00028 45.6 12.0 116 407-528 220-348 (472)
365 PRK07004 replicative DNA helic 80.7 5.5 0.00012 48.7 8.8 115 407-528 212-338 (460)
366 PF13177 DNA_pol3_delta2: DNA 80.7 6.1 0.00013 41.2 8.0 79 485-569 67-151 (162)
367 cd01130 VirB11-like_ATPase Typ 80.7 3.5 7.6E-05 43.8 6.3 34 392-425 8-42 (186)
368 KOG2028 ATPase related to the 80.6 6.1 0.00013 46.1 8.4 46 384-430 136-184 (554)
369 PRK14957 DNA polymerase III su 80.6 11 0.00024 47.0 11.4 19 411-429 41-59 (546)
370 COG0593 DnaA ATPase involved i 80.4 6.8 0.00015 46.9 9.1 14 410-423 115-128 (408)
371 PRK09111 DNA polymerase III su 80.3 8.4 0.00018 48.6 10.4 20 410-429 48-67 (598)
372 PRK06067 flagellar accessory p 80.3 7.1 0.00015 42.9 8.8 52 408-460 25-79 (234)
373 COG2804 PulE Type II secretory 80.2 2.8 6E-05 50.9 5.9 31 394-424 242-274 (500)
374 PRK09401 reverse gyrase; Revie 80.0 11 0.00024 51.2 12.0 54 433-493 328-384 (1176)
375 PRK08006 replicative DNA helic 79.9 11 0.00023 46.4 10.9 115 408-528 224-350 (471)
376 PRK13880 conjugal transfer cou 79.8 1.4 3.1E-05 55.7 3.5 56 409-464 176-233 (636)
377 PRK00080 ruvB Holliday junctio 79.4 3.4 7.3E-05 48.0 6.2 19 409-427 52-70 (328)
378 TIGR01074 rep ATP-dependent DN 79.2 3.1 6.8E-05 53.0 6.4 62 393-456 1-69 (664)
379 TIGR02012 tigrfam_recA protein 79.1 6.4 0.00014 45.8 8.2 88 408-526 55-145 (321)
380 TIGR02640 gas_vesic_GvpN gas v 79.0 3.1 6.7E-05 46.8 5.6 41 399-439 12-52 (262)
381 PRK00440 rfc replication facto 78.8 11 0.00024 43.0 10.1 17 410-426 40-56 (319)
382 PRK11034 clpA ATP-dependent Cl 78.6 12 0.00025 48.6 11.1 19 408-426 207-225 (758)
383 COG2255 RuvB Holliday junction 78.5 4 8.7E-05 46.2 6.0 18 410-427 54-71 (332)
384 PRK14086 dnaA chromosomal repl 78.5 5.7 0.00012 49.9 8.0 14 411-424 317-330 (617)
385 PRK14969 DNA polymerase III su 78.5 6.3 0.00014 49.0 8.5 19 411-429 41-59 (527)
386 PLN03187 meiotic recombination 78.3 6 0.00013 46.5 7.7 45 408-452 126-179 (344)
387 PRK12608 transcription termina 78.2 7.3 0.00016 46.1 8.4 30 396-425 118-150 (380)
388 PRK07133 DNA polymerase III su 78.2 16 0.00035 46.8 12.0 18 411-428 43-60 (725)
389 KOG1133 Helicase of the DEAD s 77.9 2.6 5.7E-05 52.4 4.8 38 393-430 15-56 (821)
390 PRK05563 DNA polymerase III su 77.8 5.1 0.00011 50.1 7.5 19 410-428 40-58 (559)
391 PRK09361 radB DNA repair and r 77.3 12 0.00026 40.7 9.4 34 408-441 23-59 (225)
392 TIGR03346 chaperone_ClpB ATP-d 77.2 13 0.00029 48.9 11.3 19 408-426 194-212 (852)
393 TIGR02639 ClpA ATP-dependent C 77.1 10 0.00022 49.1 10.1 19 408-426 203-221 (731)
394 PF14617 CMS1: U3-containing 9 77.1 3.1 6.7E-05 46.6 4.7 82 434-525 127-212 (252)
395 PRK06749 replicative DNA helic 76.3 15 0.00032 44.6 10.5 113 408-527 186-312 (428)
396 PRK07993 DNA polymerase III su 76.1 10 0.00022 44.4 8.9 80 485-570 73-158 (334)
397 TIGR01073 pcrA ATP-dependent D 75.9 4.1 8.9E-05 52.6 6.1 63 392-456 3-72 (726)
398 PRK10865 protein disaggregatio 75.9 16 0.00035 48.1 11.6 19 408-426 199-217 (857)
399 PRK13900 type IV secretion sys 75.8 3.2 7E-05 48.4 4.7 41 405-445 157-199 (332)
400 PRK04537 ATP-dependent RNA hel 75.8 9.5 0.00021 47.9 9.1 59 433-493 257-315 (572)
401 PRK04837 ATP-dependent RNA hel 75.6 7.2 0.00016 46.9 7.7 59 433-493 255-313 (423)
402 COG0378 HypB Ni2+-binding GTPa 75.6 13 0.00028 40.2 8.5 61 410-496 15-75 (202)
403 PRK14953 DNA polymerase III su 75.5 11 0.00025 46.3 9.4 19 411-429 41-59 (486)
404 PF03354 Terminase_1: Phage Te 75.5 4.2 9.1E-05 49.8 5.7 61 396-456 1-77 (477)
405 TIGR00678 holB DNA polymerase 75.4 10 0.00022 40.2 7.9 17 410-426 16-32 (188)
406 TIGR00635 ruvB Holliday juncti 75.4 5.2 0.00011 45.7 6.2 18 409-426 31-48 (305)
407 PRK14963 DNA polymerase III su 75.4 6.5 0.00014 48.6 7.4 17 411-427 39-55 (504)
408 cd01393 recA_like RecA is a b 75.3 14 0.0003 40.0 9.3 37 408-444 19-64 (226)
409 PRK06835 DNA replication prote 75.1 5.7 0.00012 46.4 6.4 47 221-268 34-80 (329)
410 cd00561 CobA_CobO_BtuR ATP:cor 74.9 37 0.00081 35.5 11.7 47 512-561 93-139 (159)
411 PRK11192 ATP-dependent RNA hel 74.8 15 0.00032 44.3 10.2 59 433-493 245-303 (434)
412 TIGR03880 KaiC_arch_3 KaiC dom 74.7 14 0.0003 40.3 9.0 51 408-459 16-69 (224)
413 PRK05986 cob(I)alamin adenolsy 74.3 16 0.00035 39.3 9.1 47 513-562 114-160 (191)
414 PRK07773 replicative DNA helic 74.0 12 0.00026 49.5 9.8 113 408-527 217-340 (886)
415 PTZ00110 helicase; Provisional 73.9 11 0.00023 47.1 8.9 60 432-493 376-435 (545)
416 PRK14948 DNA polymerase III su 73.8 14 0.00029 47.0 9.7 20 410-429 40-59 (620)
417 KOG1513 Nuclear helicase MOP-3 73.5 4 8.6E-05 51.4 4.7 78 641-718 850-938 (1300)
418 PRK14955 DNA polymerase III su 73.2 18 0.0004 43.2 10.3 19 411-429 41-59 (397)
419 COG1222 RPT1 ATP-dependent 26S 73.0 10 0.00022 44.3 7.6 21 409-429 186-206 (406)
420 PF00437 T2SE: Type II/IV secr 73.0 3.4 7.5E-05 46.3 3.9 40 406-445 125-167 (270)
421 KOG2373 Predicted mitochondria 73.0 5.1 0.00011 46.3 5.0 53 401-453 262-324 (514)
422 COG0513 SrmB Superfamily II DN 73.0 12 0.00025 46.5 8.7 59 433-493 273-331 (513)
423 TIGR00614 recQ_fam ATP-depende 72.9 12 0.00026 45.7 8.9 71 421-493 211-284 (470)
424 COG2909 MalT ATP-dependent tra 72.5 11 0.00024 48.4 8.3 54 502-560 117-171 (894)
425 PF13481 AAA_25: AAA domain; P 72.4 15 0.00033 38.6 8.4 48 407-455 31-91 (193)
426 COG0470 HolB ATPase involved i 72.4 10 0.00022 43.3 7.6 47 513-565 108-154 (325)
427 PRK14950 DNA polymerase III su 72.1 11 0.00024 47.5 8.4 18 411-428 41-58 (585)
428 PF05673 DUF815: Protein of un 72.1 13 0.00028 41.6 7.9 88 409-496 53-151 (249)
429 cd00079 HELICc Helicase superf 72.1 23 0.0005 34.1 9.1 60 433-494 28-87 (131)
430 PRK11776 ATP-dependent RNA hel 71.8 10 0.00022 46.1 7.8 59 433-493 242-300 (460)
431 PLN00020 ribulose bisphosphate 71.6 5.8 0.00013 46.8 5.3 17 410-426 150-166 (413)
432 TIGR02760 TraI_TIGR conjugativ 71.4 10 0.00022 54.2 8.5 54 393-446 429-487 (1960)
433 PF05496 RuvB_N: Holliday junc 71.4 15 0.00033 40.6 8.1 47 410-456 52-99 (233)
434 PHA03368 DNA packaging termina 71.4 22 0.00048 45.0 10.4 75 378-456 228-307 (738)
435 KOG0741 AAA+-type ATPase [Post 71.3 21 0.00046 43.7 9.8 62 511-576 595-662 (744)
436 TIGR00708 cobA cob(I)alamin ad 71.3 16 0.00036 38.7 8.2 47 513-562 96-142 (173)
437 COG0630 VirB11 Type IV secreto 71.2 9.2 0.0002 44.3 6.9 55 391-445 125-182 (312)
438 TIGR02785 addA_Gpos recombinat 71.1 7 0.00015 53.5 6.8 61 393-455 1-67 (1232)
439 PF12846 AAA_10: AAA-like doma 71.0 4.1 8.9E-05 45.6 3.9 19 408-426 1-19 (304)
440 PRK07471 DNA polymerase III su 70.8 25 0.00053 41.8 10.4 43 513-561 140-182 (365)
441 PRK10436 hypothetical protein; 70.7 6.7 0.00014 47.9 5.8 31 394-424 202-234 (462)
442 cd01129 PulE-GspE PulE/GspE Th 70.5 8.2 0.00018 43.6 6.2 31 394-424 64-96 (264)
443 COG0466 Lon ATP-dependent Lon 70.3 6.1 0.00013 49.8 5.3 86 408-536 350-436 (782)
444 KOG0332 ATP-dependent RNA heli 70.3 11 0.00024 44.1 6.9 63 430-494 327-389 (477)
445 PF13671 AAA_33: AAA domain; P 70.2 25 0.00054 34.9 9.0 17 411-427 2-18 (143)
446 KOG0742 AAA+-type ATPase [Post 70.0 8.4 0.00018 45.5 6.0 35 409-467 385-419 (630)
447 TIGR00631 uvrb excinuclease AB 69.9 18 0.00039 46.2 9.6 81 432-525 441-521 (655)
448 COG2805 PilT Tfp pilus assembl 69.8 6.1 0.00013 45.2 4.8 22 411-432 128-151 (353)
449 PRK10590 ATP-dependent RNA hel 69.6 13 0.00027 45.4 7.9 59 433-493 245-303 (456)
450 PRK09302 circadian clock prote 69.6 13 0.00029 45.8 8.3 51 408-459 273-326 (509)
451 KOG0331 ATP-dependent RNA heli 69.5 9.9 0.00022 46.7 6.8 59 433-493 341-399 (519)
452 PTZ00293 thymidine kinase; Pro 69.4 8 0.00017 42.3 5.5 36 408-443 4-42 (211)
453 PHA03333 putative ATPase subun 69.3 27 0.00059 44.4 10.6 61 395-455 171-238 (752)
454 PRK08699 DNA polymerase III su 69.0 25 0.00053 41.1 9.8 32 395-426 3-39 (325)
455 PRK06090 DNA polymerase III su 69.0 22 0.00048 41.4 9.3 79 485-569 73-157 (319)
456 COG0556 UvrB Helicase subunit 68.9 25 0.00053 43.2 9.7 80 433-525 446-525 (663)
457 COG3267 ExeA Type II secretory 68.8 37 0.00081 38.2 10.4 36 407-442 49-87 (269)
458 PRK09519 recA DNA recombinatio 68.6 23 0.00051 45.8 10.1 89 408-527 60-151 (790)
459 KOG0333 U5 snRNP-like RNA heli 68.5 20 0.00044 43.7 8.9 75 417-494 500-576 (673)
460 PF01443 Viral_helicase1: Vira 68.4 4.7 0.0001 43.7 3.6 14 411-424 1-14 (234)
461 PRK08451 DNA polymerase III su 68.3 18 0.00039 45.0 8.9 17 411-427 39-55 (535)
462 TIGR02533 type_II_gspE general 68.2 7.5 0.00016 47.8 5.6 31 394-424 226-258 (486)
463 KOG0701 dsRNA-specific nucleas 67.8 2 4.3E-05 58.5 0.6 57 637-693 343-399 (1606)
464 PRK04301 radA DNA repair and r 67.8 20 0.00043 41.5 8.7 36 408-443 102-146 (317)
465 TIGR02538 type_IV_pilB type IV 67.7 7.9 0.00017 48.5 5.8 31 394-424 300-332 (564)
466 PF14532 Sigma54_activ_2: Sigm 66.8 13 0.00029 37.2 6.3 95 400-497 13-112 (138)
467 PRK14954 DNA polymerase III su 66.6 20 0.00043 45.5 8.9 20 410-429 40-59 (620)
468 COG0464 SpoVK ATPases of the A 66.5 22 0.00048 43.7 9.3 26 409-434 277-302 (494)
469 COG3973 Superfamily I DNA and 66.4 14 0.0003 45.8 7.1 80 378-458 191-285 (747)
470 COG1444 Predicted P-loop ATPas 66.3 12 0.00027 47.8 7.0 133 394-562 212-359 (758)
471 PF07728 AAA_5: AAA domain (dy 66.3 5.7 0.00012 39.6 3.4 16 410-425 1-16 (139)
472 KOG0745 Putative ATP-dependent 66.3 5 0.00011 47.8 3.3 21 407-427 225-245 (564)
473 PTZ00424 helicase 45; Provisio 66.1 16 0.00035 43.2 7.8 59 433-493 267-325 (401)
474 PRK09183 transposase/IS protei 65.9 7.9 0.00017 43.6 4.8 22 405-426 99-120 (259)
475 TIGR03743 SXT_TraD conjugative 65.6 12 0.00026 47.6 6.7 57 408-464 176-239 (634)
476 KOG0733 Nuclear AAA ATPase (VC 65.4 12 0.00025 46.6 6.2 18 408-425 223-240 (802)
477 PF01637 Arch_ATPase: Archaeal 65.4 12 0.00026 40.1 5.9 17 408-424 20-36 (234)
478 PRK14971 DNA polymerase III su 65.1 20 0.00043 45.5 8.6 46 512-563 119-164 (614)
479 TIGR02397 dnaX_nterm DNA polym 65.1 21 0.00045 41.5 8.3 17 410-426 38-54 (355)
480 PRK11634 ATP-dependent RNA hel 64.9 16 0.00035 46.5 7.8 59 433-493 245-303 (629)
481 PRK06647 DNA polymerase III su 64.9 22 0.00047 44.7 8.7 31 970-1000 495-525 (563)
482 PF12775 AAA_7: P-loop contain 64.7 6.2 0.00014 44.8 3.7 25 401-425 25-50 (272)
483 PTZ00454 26S protease regulato 64.6 66 0.0014 38.7 12.4 22 408-429 179-200 (398)
484 cd01123 Rad51_DMC1_radA Rad51_ 64.6 26 0.00055 38.2 8.4 34 408-441 19-61 (235)
485 PRK10917 ATP-dependent DNA hel 64.5 14 0.0003 47.5 7.1 52 620-671 336-388 (681)
486 PRK01297 ATP-dependent RNA hel 64.4 33 0.00072 41.9 10.2 59 433-493 335-393 (475)
487 TIGR03819 heli_sec_ATPase heli 64.4 14 0.0003 43.4 6.6 53 393-445 162-217 (340)
488 PRK11057 ATP-dependent DNA hel 64.3 17 0.00037 46.1 7.8 61 432-494 235-295 (607)
489 CHL00095 clpC Clp protease ATP 64.3 28 0.0006 45.8 10.0 20 408-427 200-219 (821)
490 TIGR03689 pup_AAA proteasome A 64.2 13 0.00029 45.9 6.6 19 408-426 216-234 (512)
491 TIGR00416 sms DNA repair prote 63.7 24 0.00052 43.1 8.7 49 408-457 94-145 (454)
492 KOG1564 DNA repair protein RHP 63.7 9.5 0.00021 43.2 4.7 35 411-445 105-153 (351)
493 PF01745 IPT: Isopentenyl tran 63.6 6.6 0.00014 43.0 3.4 27 411-437 4-30 (233)
494 TIGR00176 mobB molybdopterin-g 63.6 15 0.00032 38.1 6.0 14 411-424 2-15 (155)
495 KOG0729 26S proteasome regulat 63.5 35 0.00076 38.4 8.9 50 378-429 182-232 (435)
496 TIGR02655 circ_KaiC circadian 63.4 20 0.00044 44.0 8.1 52 407-459 20-75 (484)
497 KOG1513 Nuclear helicase MOP-3 63.1 7.7 0.00017 49.0 4.2 159 393-561 264-456 (1300)
498 PTZ00035 Rad51 protein; Provis 63.0 21 0.00047 41.8 7.8 34 408-441 118-160 (337)
499 PHA00350 putative assembly pro 62.9 14 0.0003 44.2 6.3 16 411-426 4-19 (399)
500 TIGR01243 CDC48 AAA family ATP 62.2 26 0.00057 45.4 9.1 21 409-429 488-508 (733)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.2e-213 Score=1949.05 Aligned_cols=1091 Identities=69% Similarity=1.042 Sum_probs=990.5
Q ss_pred CCCcCCccccchHHHHHHHHHhhhhcccccccccCCCCCCcccCCCCCcccccccccccccCCCCcccCCCcccccCccc
Q 001155 2 TGQIQNFPRLHSAEVEKAWHTLSSLQISRRNYIRPGLSTPVEHSDNDASHNVSRRASLQSSSDGSKFSEPMNNRQKGSQI 81 (1136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1136)
+|++||+||||+|+||||||+|++|||+ +||||||+|+||++-..|++++++++|++++|+++++||++++|+++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1195)
T PLN03137 69 NCAPVNVQTLASPQIEKAWHALSSLSIN-NNYLRPGKTPPIDNGSTDLSSDVGQSTTKVSSSTGGSYYEHNHPHQNQREV 147 (1195)
T ss_pred cccccchhhhcchHHHHHHHHHhhhhhh-hcccCCCCCCCccccccccccccccCcceeeccCCcccccccccchhhhhc
Confidence 6999999999999999999999999999 699999999999995569999999999999999999999999999999999
Q ss_pred cccCCCCccccCCcccCCCccccccCcCCCCCcccccccccccccc-ccCCCCCccccccccchhhhhhhcCCChhhhhh
Q 001155 82 NFNVNEPARCTGSFHLSNNVRDAGAGKGLRGQNEIKASVVANAHFK-FSDGFGNHTTEAGQIDESAEVLANKIDDDEILE 160 (1136)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1136)
+|+++++++|+|++++++|++ +++.+|++++|++|+++|+|++ ++++|.+|+++++|.+|+.++..|+||||||||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (1195)
T PLN03137 148 SGTNSSFASFSSSSVGDDNAT---AEKVPRGNSEIRASVPNNTHSNGVEGSFIKNSAHTAQQKESREASLDEIDDDDILE 224 (1195)
T ss_pred cCccccccccccccCCCCccc---hhhccCCccccccccccccccccccccccccccchhhhhhhhhcccccCChHHHHh
Confidence 999999999999999999999 9999999999999999999999 899999999999999999999999999999999
Q ss_pred cCChhHHHHhhcccCCCCCCCcCCCCCCCCCCCCCCCCcccccCCChhhhcccccccccccCcchhHHHHHHHHHHHHHH
Q 001155 161 TIDVDQIVMEHYHSSCTPKPSISRLPSITPNAGNDKFARQDETCLPPELCSICNHGCKLGLCPETSSHIQDMKDMLIAIS 240 (1136)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (1136)
+|||||||||||||||||||++||||++|||+++++|++++|++||||||+||+||+||||||||..||++|||+|++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1195)
T PLN03137 225 NIDVDQIVMEHYQSTCTPQPSVSKFPPITPTVDTFASRREEEQFLPPELCSNCSHGIKLGLCPEASTHVEQMKDMLLAIS 304 (1195)
T ss_pred hccHHHHHHHhccccCCCCCccccCCCCCCCcccccccChhhccCCHHHHhhcccccceecCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhcccCccccc-ccccccCCCCccccCCCceecccccccc
Q 001155 241 NELLDNATNLSPAQTEKLRQERLQLSKQIQLLEGYRQAEERQKSHFSASTT-RTYQYETPQPAVLKIDPIRFDTQVHLYN 319 (1136)
Q Consensus 241 ~~lld~~~~l~~~~~~~~r~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~l~f~~~~~l~~ 319 (1136)
++|||++.+|++++++++||++.+|.+||++||.+++|+++++++++++|. ..+++++|+.....++..+|+...|+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1195)
T PLN03137 305 NELLDNAADLSPDQVEQLRQDRLQLKKQIQQLEIHIRDKERQKSQFSASTATRNFQYETPQSTNYKIDPMQTDAQVHLRN 384 (1195)
T ss_pred HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhccccccccccCCCcccceeccccccccceeecC
Confidence 999999999999999999999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred cccccCC--CCCcccccccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhCCCCCCHH
Q 001155 320 ESEGYGN--WNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPN 397 (1136)
Q Consensus 320 ~~~~~~p--~~s~r~~~~~~e~l~vp~~~~~~~~~~~~~i~i~~~~~~~~~~w~~~~fp~s~~l~~~lk~~fG~~~lrpi 397 (1136)
+.+.|.. |+.++..+.+.+.+.+...|+.+.++.+..+.+.+.+....+.|....|||+..+...++++|||..|||+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~ 464 (1195)
T PLN03137 385 EQGRYEKDNWNTPRDSFSSVDRYGISSGPVEREPYVPKFIDVTYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPN 464 (1195)
T ss_pred CCCcccccccCCcccchhhhhhhcccCCCcccCccccccceeeeecCCCCccccccCCCchHHHHHHHHHHcCCCCCCHH
Confidence 9999966 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHH
Q 001155 398 QREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILR 477 (1136)
Q Consensus 398 Q~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~ 477 (1136)
|.++|++++.|+|+|++||||+|||+||+||++...+.+|||+|+++||+||+..+...|+++..++++....++..++.
T Consensus 465 Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr 544 (1195)
T PLN03137 465 QREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQ 544 (1195)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEee
Q 001155 478 ELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTA 557 (1136)
Q Consensus 478 ~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSA 557 (1136)
.+....+.++|||+|||+|...+.+.+.+..+.....+.+|||||||||++|||+||++|+.|..++..+|.+|+++|||
T Consensus 545 ~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTA 624 (1195)
T PLN03137 545 ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTA 624 (1195)
T ss_pred HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 77655578999999999998766677777666655669999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhcCcceEEecccCCCCchhhh--------HHHHHHHHHh------ccccc-chhhHHHHHHHHhhcC
Q 001155 558 TATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD--------CEKVAERLQV------GLSYG-HFFLLKEFYVVSLECG 622 (1136)
Q Consensus 558 T~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~--------~e~lae~L~~------~l~~~-~~~~~~~~~~~l~~~g 622 (1136)
|++..++.++.+.|++..+.++..+++|||++.. .+.+...+.. .+.|. .......+...+...|
T Consensus 625 TAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G 704 (1195)
T PLN03137 625 TATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG 704 (1195)
T ss_pred cCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC
Confidence 9999999999999999999999999999998732 2333344332 12222 2233456667777899
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEe
Q 001155 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 702 (1136)
Q Consensus 623 ~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~ 702 (1136)
+.+..|||||+.++|..+++.|..|+++|||||++||||||+|+|++||||++|+|++.|+||+|||||+|.+|.|++||
T Consensus 705 ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 705 HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhhhCCCCCCccccCCC
Q 001155 703 SYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTC 782 (1136)
Q Consensus 703 ~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~yFge~~~~~~C~~~C 782 (1136)
+..|+..+++||.++...++++..++.+ ..+..+..+...++|..|++||++...|||.+||.||||.|+...|+++|
T Consensus 785 s~~D~~~~~~lI~~~~~~~s~~~~~~~r--~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C~~~C 862 (1195)
T PLN03137 785 SYSDYIRVKHMISQGGVEQSPMAMGYNR--MASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTC 862 (1195)
T ss_pred cHHHHHHHHHHHhccccccchhhhhhcc--cchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCCCCCC
Confidence 9999999999998776655555444432 12234456777899999999999877999999999999998777898789
Q ss_pred CCCCCCCcccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccCCcccCCHHHHHHHHHHHHH
Q 001155 783 DNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVI 862 (1136)
Q Consensus 783 DnC~~~~~~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~gk~~s~~~~~~li~~l~~ 862 (1136)
|||......++.|+|.+|+++++||.+++++||.++++|+|||+++++|.+++|+++++||.||++++.+|++||++|+.
T Consensus 863 DnC~~~~~~~~~D~T~~Aq~~ls~V~~~~~~fg~~~iidvlrGs~~~~i~~~~~d~l~~~G~gk~~s~~~~~~li~~Li~ 942 (1195)
T PLN03137 863 DNCSSSKSLIDKDVTEIARQLVELVKLTGERFSSAHILEVYRGSLNQYVKKHRHETLSLHGAGKHLSKGEASRILHYLVT 942 (1195)
T ss_pred CCCCCCCcccccccHHHHHHHHHHHHHhccCcchhheehhhhccccHHHHHhCcccccccCccccCCHHHHHHHHHHHHH
Confidence 99999887667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEeccccccccccCCCCCCCcccccccCCCCCCCCCCCCCCC
Q 001155 863 EDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQ 942 (1136)
Q Consensus 863 ~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1136)
+|||.++..+++.||.++++|++++.+++.+|+|..+|.|++|...+..+..+..+++++++..+.+...+...... .
T Consensus 943 ~g~L~~~~~~~~~y~~~~~~L~l~~~ka~~vL~g~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 1020 (1195)
T PLN03137 943 EDILAEDVKKSDLYGSVSSLLKVNESKAYKLFSGGQTIIMRFPSSVKASKPSKFEATPAKGPLTSGKQSTLPMATPA--Q 1020 (1195)
T ss_pred cCCceeeccccccCCccceEEEeChHHHHHHhCCCceEEEecccccccccccccccccccccccccccccccccccc--c
Confidence 99999987666779988889999987799999999999999875433333333333444433221111111000000 1
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Q 001155 943 NEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIEST 1022 (1136)
Q Consensus 943 ~e~d~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~ 1022 (1136)
.+.+.++++.||++|+.||+++|++.++++|||+||+|+||++||..+|.|.++|++|+|||+.|+++||++||++|++|
T Consensus 1021 ~~~~~~~d~~Lfe~Lr~lR~elA~e~~~~vppyvIFsD~TL~eIA~~~P~T~~eLl~I~GVG~~KlekYG~~fL~vI~~~ 1100 (1195)
T PLN03137 1021 PPVDLNLSAILYTALRKLRTALVKEAGDGVMAYHIFGNATLQQISKRIPRTKEELLEINGLGKAKVSKYGDRLLETIEST 1100 (1195)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhhhcCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 11133456889999999999999983358999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCccccccCccCCCCCCCCCCCcccchhhhhhhhhhhcccccceecccCCC-CCCcccccCCC
Q 001155 1023 IKEFYKTDKNGSSSNDSNDSGKRRRDENEAPNANKGDDDDFTKSTARSKKRASKSQNKTVEVINHNEP-DSYECVDDLDF 1101 (1136)
Q Consensus 1023 ~~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1101 (1136)
+.||+.+..+++++|+++++.||||+++..+ |+++||||+++|+|||||++|+||+++|+++++++ ++++|=||+||
T Consensus 1101 ~~ey~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1178 (1195)
T PLN03137 1101 INEYYKTDKNSSSSNDSPDSGKRRRDENINP--NVAEDDDFTKSTSQSKKKTVKNKNKGVEHGNSRETDRRNQCDDDLDF 1178 (1195)
T ss_pred HHHhcCCcccCCCCCCCchhhhhcccccCCC--CcccccccccccchhHHHHHhcccCcccccccccccccccccccccc
Confidence 9999999999999999999999999988666 89999999999999999999999999999999999 88888444444
Q ss_pred C
Q 001155 1102 D 1102 (1136)
Q Consensus 1102 ~ 1102 (1136)
+
T Consensus 1179 ~ 1179 (1195)
T PLN03137 1179 K 1179 (1195)
T ss_pred c
Confidence 4
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-99 Score=895.49 Aligned_cols=571 Identities=42% Similarity=0.693 Sum_probs=508.5
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCC
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~ 459 (1136)
.+...|+++|||..||+.|.++|..+++|+|+|++||||+|||+|||||+++..|.+|||+|+++||+|||+.+.+.|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 44577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhh
Q 001155 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG 539 (1136)
Q Consensus 460 v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~ 539 (1136)
+..+++..+..++..++..+.. +..++||.+||++.+. .+.+.+. ...+.++|||||||+++|||||||+|++
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~--g~~klLyisPErl~~~-~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKS--GQLKLLYISPERLMSP-RFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhc--CceeEEEECchhhcCh-HHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHH
Confidence 9999999999999999888876 7899999999999864 4444443 4459999999999999999999999999
Q ss_pred hhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhhHHHH---HH---HHHh--------cccc
Q 001155 540 LGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKV---AE---RLQV--------GLSY 605 (1136)
Q Consensus 540 L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~~e~l---ae---~L~~--------~l~~ 605 (1136)
|+.+...+|++|+++||||+++.++.||.+.|++..+.+|..+++|||++..+... .. .+.. ++.|
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIY 236 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIY 236 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999555431 11 2221 1222
Q ss_pred c-chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHH
Q 001155 606 G-HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 684 (1136)
Q Consensus 606 ~-~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQ 684 (1136)
. ....+..+...+...|+.++.|||||..++|..++++|..++++|||||.|||||||+||||+||||++|.|+++|||
T Consensus 237 c~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQ 316 (590)
T COG0514 237 CLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQ 316 (590)
T ss_pred EeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHH
Confidence 2 223455666777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHH
Q 001155 685 ECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLL 764 (1136)
Q Consensus 685 riGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ 764 (1136)
++|||||||.++.|++||++.|......++.+..+. ....+....++.+|+.||++. .|||..
T Consensus 317 E~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~----------------~~~~~~~~~kl~~~~~~~e~~-~crr~~ 379 (590)
T COG0514 317 ETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPD----------------EEQKQIELAKLRQMIAYCETQ-TCRRLV 379 (590)
T ss_pred HHhhccCCCCcceEEEeeccccHHHHHHHHHhhcch----------------HHHHHHHHHHHHHHHHhcccc-cchHHH
Confidence 999999999999999999999999999999875441 123445567899999999985 599999
Q ss_pred HHhhhCCCCCCccccCCCCCCCCCCcccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccCC
Q 001155 765 QLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGA 844 (1136)
Q Consensus 765 ll~yFge~~~~~~C~~~CDnC~~~~~~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~ 844 (1136)
+|+||||. ....|+ .||||..+.. ..|.|.+++++++++.+.+++|+..+++++++|+.++++...+|+++++||.
T Consensus 380 ll~yfge~-~~~~c~-~c~~c~~~~~--~~d~t~~a~~~ls~~~r~~~~~~~~~~~~~l~g~~~~~~~~~~~~~l~~~G~ 455 (590)
T COG0514 380 LLKYFGED-EPEPCG-NCDNCLDTPK--QFDGTIEAQKVLSCIYRMGQRFGVGYVIDVLRGSKNLKIRLLGHEKLSTYGI 455 (590)
T ss_pred HHHhcCcc-cccccc-CCCcccCcch--hcchHHHHHHHHHhHhhhhhhhhHHHHHHHHhcccchhhhhcccccccccCC
Confidence 99999998 677898 5999999876 5799999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEeccccccccccCCCCCCCcccc
Q 001155 845 GKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGS 924 (1136)
Q Consensus 845 gk~~s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p~~~k~~k~~k~~~~~~~~~ 924 (1136)
||+.+..+|..++++|+..|++.++... +.|++++ +++++++|..+++++.|...+..
T Consensus 456 ~k~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~l~l~~-~~~~vl~ge~~~~l~~~~~~~~~------------- 513 (590)
T COG0514 456 GKDLSKKTWGSLIRQLIALGLLRQSLGT--------PGLKLTE-KARNVLRGELSVELAVPRLRALS------------- 513 (590)
T ss_pred CcccCccchhhhHHHHHhcCceeecCCc--------ccccccH-hhhHhhccceeeeeccccccccc-------------
Confidence 9999999999999999999999987421 3677775 57889999999998773321100
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCC
Q 001155 925 LLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIG 1004 (1136)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~e~d~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig 1004 (1136)
. ..+..||++|+.||+++|++ .++|||+||+|+||.+||+.+|.+.++|.+|.|||
T Consensus 514 ------------~----------~~~~~lf~~lr~~r~~~a~~--~~vp~~vif~d~tl~~ma~~~p~~~~~~~~i~gvg 569 (590)
T COG0514 514 ------------I----------GEDRDLFERLRALRKEIADE--ENVPPYVVFSDATLKEMAEKQPQSADELLSINGVG 569 (590)
T ss_pred ------------c----------cccHHHHHHHHHHHHHhhhh--hcCCceEEecchHHHHHHHHcCCCHHHHHHhcCCc
Confidence 0 00366999999999999999 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001155 1005 KAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 1005 ~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
..|+++||+.|+++|++|..
T Consensus 570 ~~k~~~yg~~fl~~i~~~~~ 589 (590)
T COG0514 570 EAKLERYGQAFLAVIQAHAA 589 (590)
T ss_pred ccchhhccHHHHHHHHHhcc
Confidence 99999999999999999864
No 3
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8e-93 Score=870.67 Aligned_cols=583 Identities=35% Similarity=0.615 Sum_probs=501.5
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc
Q 001155 377 WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
......+.|+++|||..|||+|.++|+.++.|+|++++||||+|||+||++|++...+.+|||+|+++|+.||+..+...
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~ 88 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLAN 88 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHc
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccc
Q 001155 457 NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPD 536 (1136)
Q Consensus 457 gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~ 536 (1136)
|+.+..++++.........+..+.. +..+++|+|||++.... +...+. ...+++||||||||+++|||+||+.
T Consensus 89 gi~~~~~~s~~~~~~~~~~~~~~~~--g~~~il~~tPe~l~~~~-~~~~l~----~~~l~~iVIDEaH~i~~~G~~fr~~ 161 (607)
T PRK11057 89 GVAAACLNSTQTREQQLEVMAGCRT--GQIKLLYIAPERLMMDN-FLEHLA----HWNPALLAVDEAHCISQWGHDFRPE 161 (607)
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHhC--CCCcEEEEChHHhcChH-HHHHHh----hCCCCEEEEeCccccccccCcccHH
Confidence 9999999999887776666655544 67899999999997532 222222 2358999999999999999999999
Q ss_pred hhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhh-------HHHHHHHHHh------cc
Q 001155 537 YQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD-------CEKVAERLQV------GL 603 (1136)
Q Consensus 537 y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~-------~e~lae~L~~------~l 603 (1136)
|+.|..++..+|++|+++||||+++.++.++...+++..+.++..+++++|+... .+.+...+.. .+
T Consensus 162 y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 162 YAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGII 241 (607)
T ss_pred HHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999988622 2333444322 12
Q ss_pred cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHH
Q 001155 604 SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 683 (1136)
Q Consensus 604 ~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~Yi 683 (1136)
..........++..+...|+.+..|||+|+.++|..+++.|..|+++|||||++++||||+|+|++||||++|+|+++|+
T Consensus 242 Fc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~ 321 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (607)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHH
Confidence 22333456677777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHH
Q 001155 684 QECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRL 763 (1136)
Q Consensus 684 QriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~ 763 (1136)
||+|||||+|.+|.|++||++.|+..+++++++... ....+....++..|..||++ ..|||.
T Consensus 322 Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~-~~Crr~ 383 (607)
T PRK11057 322 QETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPA-----------------GQQQDIERHKLNAMGAFAEA-QTCRRL 383 (607)
T ss_pred HHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHHHHHhc-ccCHHH
Confidence 999999999999999999999999999998865321 01112234578899999997 589999
Q ss_pred HHHhhhCCCCCCccccCCCCCCCCCCcccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccC
Q 001155 764 LQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHG 843 (1136)
Q Consensus 764 ~ll~yFge~~~~~~C~~~CDnC~~~~~~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G 843 (1136)
+||+||||.+. ..|+ +||||..... ..|.|.+|+++++++.+++++||.++++++|+|++++++.+++|+++++||
T Consensus 384 ~~l~yf~e~~~-~~c~-~cd~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 459 (607)
T PRK11057 384 VLLNYFGEGRQ-EPCG-NCDICLDPPK--QYDGLEDAQKALSCIYRVNQRFGMGYVVEVLRGANNQRIRDYGHDKLKVYG 459 (607)
T ss_pred HHHHHhCCCCC-CCCC-CCCCCCCccc--ccccHHHHHHHHHHHHHhcCCCCcceeeeeeeccCcchhhhcccccCCccC
Confidence 99999999864 3576 8999988654 469999999999999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEeccccccccccCCCCCCCccc
Q 001155 844 AGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKG 923 (1136)
Q Consensus 844 ~gk~~s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p~~~k~~k~~k~~~~~~~~ 923 (1136)
.|+++++.+|++++++|+.+|||.+.. ..| ++|++|+ +++.+|.|+.+|.+.+|...+. +. .+
T Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~----~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~-------~~- 522 (607)
T PRK11057 460 IGRDKSHEHWVSVIRQLIHLGLVTQNI---AQH----SALQLTE-AARPVLRGEVSLQLAVPRIVAL-KP-------RA- 522 (607)
T ss_pred cCCcCCHHHHHHHHHHHHHcCCceecc---Ccc----ceEEECH-HHHHHhcCCceEEEeccccccc-cc-------cc-
Confidence 999999999999999999999999853 223 4789985 6889999999998887642211 00 00
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCC
Q 001155 924 SLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGI 1003 (1136)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~e~d~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gi 1003 (1136)
+.+.. ..+.+..||++|+.||+++|++ .++|||+||+|.+|++||..+|.|.++|.+|+||
T Consensus 523 ---~~~~~--------------~~~~~~~l~~~Lr~~R~~~a~~--~~~~~~~if~d~tL~~ia~~~P~t~~~l~~i~Gv 583 (607)
T PRK11057 523 ---MQKSF--------------GGNYDRKLFAKLRKLRKSIADE--ENIPPYVVFNDATLIEMAEQMPITASEMLSVNGV 583 (607)
T ss_pred ---ccccc--------------cccchHHHHHHHHHHHHHHHHH--cCCCCeEEECHHHHHHHHHHCCCCHHHHcCCCCC
Confidence 00000 1123578999999999999999 8999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 001155 1004 GKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 1004 g~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
|+.|+++||++||++|+.|+.
T Consensus 584 g~~K~~~yg~~~l~~i~~~~~ 604 (607)
T PRK11057 584 GQRKLERFGKPFMALIRAHVD 604 (607)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999985
No 4
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.1e-88 Score=828.50 Aligned_cols=577 Identities=39% Similarity=0.644 Sum_probs=493.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeE
Q 001155 382 EANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAT 461 (1136)
Q Consensus 382 ~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~ 461 (1136)
.+.|+++|||++|||+|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||.||+..|...|+++.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhh
Q 001155 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541 (1136)
Q Consensus 462 ~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~ 541 (1136)
.++++.+..+....+..+.. +.++|+|+|||++.. ..+.+.+ ....+++||||||||+++|||+||+.|+.|.
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~--~~~~il~~tpe~l~~-~~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~ 154 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVN--GELKLLYVAPERLEQ-DYFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLG 154 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhC--CCCCEEEEChhHhcC-hHHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHH
Confidence 99999998887777666654 688999999999964 3333322 2346999999999999999999999999999
Q ss_pred hhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhh-------HHHHHHHHHhc-----ccc-cch
Q 001155 542 ILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD-------CEKVAERLQVG-----LSY-GHF 608 (1136)
Q Consensus 542 ~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~-------~e~lae~L~~~-----l~~-~~~ 608 (1136)
.+...+|+.|+++||||++..+..++...+++..+..+..+++|+|+... ...+.+.+... +.+ ...
T Consensus 155 ~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr 234 (591)
T TIGR01389 155 SLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSR 234 (591)
T ss_pred HHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcH
Confidence 99999999999999999999999999999999988888899999998722 23444554432 222 233
Q ss_pred hhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcc
Q 001155 609 FLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688 (1136)
Q Consensus 609 ~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGR 688 (1136)
.....+...+...|+.+..|||+|+.++|..+++.|.+|+++|||||++|+||||+|+|++||||++|.|++.|+||+||
T Consensus 235 ~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GR 314 (591)
T TIGR01389 235 KKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGR 314 (591)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhcc
Confidence 34566677777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhh
Q 001155 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVH 768 (1136)
Q Consensus 689 AGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~y 768 (1136)
|||+|.+|.|++||++.|...++.++.+..+.+ ...+.....+..|.+||++ ..|||.++++|
T Consensus 315 aGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~----------------~~~~~~~~~l~~~~~~~~~-~~c~r~~~~~~ 377 (591)
T TIGR01389 315 AGRDGLPAEAILLYSPADIALLKRRIEQSEADD----------------DYKQIEREKLRAMIAYCET-QTCRRAYILRY 377 (591)
T ss_pred ccCCCCCceEEEecCHHHHHHHHHHHhccCCcH----------------HHHHHHHHHHHHHHHHHcc-cccHhHHHHHh
Confidence 999999999999999999999999987643321 1122335678899999996 69999999999
Q ss_pred hCCCCCCccccCCCCCCCCCCcccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccCCcccC
Q 001155 769 FGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHL 848 (1136)
Q Consensus 769 Fge~~~~~~C~~~CDnC~~~~~~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~gk~~ 848 (1136)
|||.. ...|+ +||||..... ..|+|.+++++++++.+++++++.++++++++|++++.+.+.+++++++||.|+++
T Consensus 378 f~~~~-~~~c~-~cd~c~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 453 (591)
T TIGR01389 378 FGENE-VEPCG-NCDNCLDPPK--SYDATVEAQKALSCVYRMGQRFGVGYIIEVLRGSKNDKILQKGHDQLSTYGIGKDY 453 (591)
T ss_pred cCCCC-CCCCC-CCCCCCCCCc--eeehHHHHHHHHHHHHHhcCCCchhHhHHHHhCccchhHHhcCcccCCccCcCCCC
Confidence 99973 35686 8999988654 57999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEeccccccccccCCCCCCCcccccccC
Q 001155 849 AKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFPSAINSTKLSKSDVTPAKGSLLSG 928 (1136)
Q Consensus 849 s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p~~~k~~k~~k~~~~~~~~~~~~~ 928 (1136)
+..+|++++++|+.+|||.+.. ..| ++|.++. ++..++.|...+.++........+ .+ .
T Consensus 454 ~~~~~~~~~~~l~~~~~l~~~~---~~~----~~~~~~~-~~~~~l~~e~~~~~~~~~~~~~~~-~~---------~--- 512 (591)
T TIGR01389 454 TQKEWRSLIDQLIAEGLLTEND---EIY----IGLQLTE-AARKVLKNEVEVLLRPFKVVAKEK-TR---------V--- 512 (591)
T ss_pred CHHHHHHHHHHHHHcCCceecc---CcC----ceEEecc-chhhhccCcceeeecccccccchh-hh---------h---
Confidence 9999999999999999999753 234 3678874 688899988887665322110000 00 0
Q ss_pred CCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHH
Q 001155 929 KLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKV 1008 (1136)
Q Consensus 929 ~~~~~~~~~~~~~~~e~d~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~ 1008 (1136)
+ .... ...+.+||++|+.||+++|++ .++|||.||+|.+|.+||+.+|.|.++|.+|+|||+.|+
T Consensus 513 ~--------~~~~-----~~~~~~l~~~L~~wR~~~A~~--~~~p~~~If~d~~L~~ia~~~P~~~~~l~~i~gv~~~k~ 577 (591)
T TIGR01389 513 Q--------KNLS-----VGVDNALFEALRELRKEQADE--QNVPPYVIFSDSTLREMAEKRPATLNALLKIKGVGQNKL 577 (591)
T ss_pred c--------cccc-----cccHHHHHHHHHHHHHHHHHH--cCCCCeEEECHHHHHHHHHHCCCCHHHHhCCCCCCHHHH
Confidence 0 0000 011248999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001155 1009 SKYGVRLLETIEST 1022 (1136)
Q Consensus 1009 ~kYG~~iL~~i~~~ 1022 (1136)
++||++||++|++|
T Consensus 578 ~~~G~~~l~~i~~~ 591 (591)
T TIGR01389 578 DRYGEAFLEVIREY 591 (591)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
No 5
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-80 Score=770.42 Aligned_cols=618 Identities=43% Similarity=0.634 Sum_probs=494.2
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc
Q 001155 377 WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
|+.++...++.+||++.||+.|.+||.+++.|+|++|.||||+||++|||||+++.++.+|||+|+++||+||+..|...
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~ 327 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK 327 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccc
Q 001155 457 NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPD 536 (1136)
Q Consensus 457 gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~ 536 (1136)
+|++..|.+++...++..++..+......++|+|+|||++..+..+.+.+..+.....+.++|||||||+++|||||||+
T Consensus 328 ~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~ 407 (941)
T KOG0351|consen 328 GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPS 407 (941)
T ss_pred CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHH
Confidence 99999999999999999999999885558999999999999888888888888877779999999999999999999999
Q ss_pred hhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhhH---------HHHHHHHHh------
Q 001155 537 YQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDC---------EKVAERLQV------ 601 (1136)
Q Consensus 537 y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~~---------e~lae~L~~------ 601 (1136)
|++|+.++..++.+|+++||||++..+++||.+.|++.++.++..+|+|+|++..+ ..+...+..
T Consensus 408 Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s 487 (941)
T KOG0351|consen 408 YKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQS 487 (941)
T ss_pred HHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999998321 112222221
Q ss_pred ccccc-chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHh
Q 001155 602 GLSYG-HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680 (1136)
Q Consensus 602 ~l~~~-~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie 680 (1136)
.+.|+ .....+.+...+...|+.+.+|||||+..+|..|++.|..++++|+|||.|||||||+||||+||||.+|+|++
T Consensus 488 ~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E 567 (941)
T KOG0351|consen 488 GIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFE 567 (941)
T ss_pred eEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHH
Confidence 22222 22334566667778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHH-HHhHHHHHHHHHHHHhcHH
Q 001155 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVL-ETNTENLLRMVSYCENDVD 759 (1136)
Q Consensus 681 ~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~-e~~~~~l~~mv~yc~~~~~ 759 (1136)
.|||++|||||||.++.|++||+..|...++.++..+. .. .... ..+..++.+|+.||+|...
T Consensus 568 ~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~-~~---------------~~~~~~~~~~~l~~~~~yCen~t~ 631 (941)
T KOG0351|consen 568 GYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGN-RL---------------SGVKKFTRLLELVQVVTYCENETD 631 (941)
T ss_pred HHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccc-cc---------------cchhhccchhhHHHHHHhhcCccc
Confidence 99999999999999999999999999999999998761 10 0111 2567889999999999999
Q ss_pred HHHHHHHhhhCCCCCCcccc--CCCCCCCCCC--cccccchhHHHHHHHHHHHHhC--CCCChhhhhHhhhccchhHHhh
Q 001155 760 CRRLLQLVHFGEKFDSAHCK--KTCDNCSKIK--SFIEKDVTDTAKKLVELVKLTG--QQFSSSHILEVFRGSLNQYVKK 833 (1136)
Q Consensus 760 CRR~~ll~yFge~~~~~~C~--~~CDnC~~~~--~~~~~d~t~~a~~~l~~v~~~~--~~~~~~~~~~~lrGs~~~~v~~ 833 (1136)
|||++++.||||.|+...|. +.||||.... ..+.+|++..+..+..+|.... ++++...+.++++|+..+.+.+
T Consensus 632 crr~~~l~~fge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~~~~~~t~~~~~~~~~g~~~~~~~~ 711 (941)
T KOG0351|consen 632 CRRKQILEYFGEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYTLSERFTLAAIEDVGGGTLIQKAAK 711 (941)
T ss_pred hhHHHHHHhcccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeeeccchhhhhhHHhcccccHhHHHHH
Confidence 99999999999999999999 7999999987 5667899999999999987654 7999999999999999998887
Q ss_pred ccc--ccccccCCcccCCHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeecccccc--ccccCceeEEEecccccc
Q 001155 834 HRH--ETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAH--NLIIGRQNVVLRFPSAIN 909 (1136)
Q Consensus 834 ~~~--~~~~~~G~gk~~s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~--~Ll~G~~~v~l~~p~~~k 909 (1136)
+.+ ..++.+|.|+.+++.+|++++++|+.+|++.|+..... +.....+..+ +..+. .++.+...+.+.......
T Consensus 712 ~~~~~~~~~~~g~~~~~~~~~~~r~~~~Lv~~~~~~E~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~a~ 789 (941)
T KOG0351|consen 712 AEPLHDGLPAHGKGKGQSTSDAERLLRKLVAEGFIEEYDSANS-SYQLKSYKNL-GNLALRCKVLTLRFSLKVVGEESAS 789 (941)
T ss_pred hcCccccccccCcccccccchHHHHHHHHHhhhhHHHhhhhhh-hhhHhHhhhh-cccccchhhhhccccccccccccch
Confidence 775 78999999999999999999999999999999875421 1222222212 12222 455555544433211111
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCccc----------cC
Q 001155 910 STKLSKSDVTPAKGSLLSGKLSPSRNDTPSQPQNEVDLNLSAKLYSSLRMLRTLLVKEAGEGVMAYHI----------FG 979 (1136)
Q Consensus 910 ~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I----------~~ 979 (1136)
..+.... ..+..+.... ... .+..+.. . ......|-.+.+.++..+.+ ........ .-
T Consensus 790 ~~~~~~~-----~~~~~s~~~~-~~~-~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 857 (941)
T KOG0351|consen 790 ETKVAVK-----SLSGTSASCS-GSI-SPQSRSS--S-STAEVSLGELTEICLRPGSR--SSTCVKSFSNANGLLEYGLE 857 (941)
T ss_pred hhhcccc-----cccchhhhhc-ccc-Ccccccc--c-cceeeecccchhhhhccccc--cchhHHhhhccchhhhcccc
Confidence 0110000 0000000000 000 0000000 0 00111233333333333333 22222222 23
Q ss_pred hHHHHHHhhc-CCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 980 NATLQHLSKR-VPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 980 ~~~L~~ia~~-~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
+.+|..++.. .|.+...+..|+++...++.+||..++.+.+.+..
T Consensus 858 ~~~l~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ 903 (941)
T KOG0351|consen 858 RMTLEHIRESKLSDGVRGVVRIGIVTRDKDKFGGRAIRRIFQVIYS 903 (941)
T ss_pred ccchhhhcccccCCCceecccCCCcccccccccchhheeechhccc
Confidence 6677788777 99999999999999999999999999999888763
No 6
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.5e-76 Score=640.55 Aligned_cols=503 Identities=40% Similarity=0.699 Sum_probs=428.0
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHH
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 447 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~ 447 (1136)
..|...+|||+.+..+.|++.|.+..|||.|.++|++.+.|+|+++++|||+|||+||+||+|...|.+|||+|+++||.
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislme 148 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLME 148 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 448 DQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 448 dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
||+..|+++||.+..++.+.+..+...+...+.......++||+|||++.++..+..++........+.+|.|||+||.+
T Consensus 149 dqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccs 228 (695)
T KOG0353|consen 149 DQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCS 228 (695)
T ss_pred HHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehh
Confidence 99999999999999999998887777766666666678999999999999999999999888788889999999999999
Q ss_pred ccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhh-----------HHHHH
Q 001155 528 QWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMD-----------CEKVA 596 (1136)
Q Consensus 528 ~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~-----------~e~la 596 (1136)
+|||||||+|..|+.+.+.|++.|+++||||+++.+..|....|++..++.|+.+|+|||+.+. .+.++
T Consensus 229 qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~ 308 (695)
T KOG0353|consen 229 QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIA 308 (695)
T ss_pred hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999822 23444
Q ss_pred HHHHhcc--cccchh-----hHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccE
Q 001155 597 ERLQVGL--SYGHFF-----LLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 669 (1136)
Q Consensus 597 e~L~~~l--~~~~~~-----~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~ 669 (1136)
..++... ..+.++ ........+..+|+.+..||+.|.+++|..+.+.|..|+++|+|||.+||||||+|+||+
T Consensus 309 k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrf 388 (695)
T KOG0353|consen 309 KLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRF 388 (695)
T ss_pred HHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeE
Confidence 4443211 111222 234455667789999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHH-------------------------------------------HhcccCCCCCCcEEEEEecccc
Q 001155 670 VIHHSLPKSIEGYHQ-------------------------------------------ECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 670 VIh~d~P~Sie~YiQ-------------------------------------------riGRAGR~G~~g~~il~~~~~D 706 (1136)
|||+.+|+|+++||| +.|||||++.++.||+||...|
T Consensus 389 vihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 389 VIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFAD 468 (695)
T ss_pred EEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHH
Confidence 999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhhhCCCCCCccccCCCCCCC
Q 001155 707 FIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCS 786 (1136)
Q Consensus 707 ~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~yFge~~~~~~C~~~CDnC~ 786 (1136)
..++..|+.. -...+++|+.|++||.+...|||..+.+||+|.|++..|.++||||+
T Consensus 469 ifk~ssmv~~-----------------------e~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~ 525 (695)
T KOG0353|consen 469 IFKISSMVQM-----------------------ENTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCC 525 (695)
T ss_pred HHhHHHHHHH-----------------------HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhc
Confidence 9888877643 23457889999999999999999999999999999999999999999
Q ss_pred CCCcccccchhHHHHHHHHHHH----HhCCCCChhhhhHhhhccchhHHhhcccccccccCC-cccCCHHHHHHHHHHHH
Q 001155 787 KIKSFIEKDVTDTAKKLVELVK----LTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGA-GKHLAKSEASRILRHLV 861 (1136)
Q Consensus 787 ~~~~~~~~d~t~~a~~~l~~v~----~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~-gk~~s~~~~~~li~~l~ 861 (1136)
+...++..+.++.++.+++..+ .+++.++.....+-..|...... -+-|. .-.+.+++++.||.+++
T Consensus 526 ~~n~f~~~n~~ey~~dl~e~~kt~~~~i~e~ln~~k~~~~~i~~~~~~~--------~la~~l~~s~~re~~ekii~~~l 597 (695)
T KOG0353|consen 526 KDNAFEGKNIKEYCRDLIEAAKTQAEEIEEHLNPAKDGDGRIGGGAAKE--------LLAGKLAGSLNREDCEKIIAHFL 597 (695)
T ss_pred cCccccccchHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHH--------HHhhhhcCCCCHHHHHHHHHHHH
Confidence 9998888888887887777654 23333333333332222211100 01111 12478999999999999
Q ss_pred HhcchhhhhhcccCCCceeeEEeeccccccccccCc-eeEEEecc
Q 001155 862 IEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGR-QNVVLRFP 905 (1136)
Q Consensus 862 ~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~-~~v~l~~p 905 (1136)
.+|||+|+++.+ .|. +++||+++. + ..|++|. .-|.|++.
T Consensus 598 ie~ylkedf~ft-~ya-~isyl~ig~-k-~~l~n~ea~ai~mqvt 638 (695)
T KOG0353|consen 598 IEGYLKEDFHFT-AYA-TISYLKIGP-K-ANLLNGEADAIKMQVT 638 (695)
T ss_pred HHHHHhhccceE-EEE-EEEEEEecc-h-hhhhcCccceEEEEee
Confidence 999999998653 464 556889975 3 4677777 67777653
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.4e-71 Score=660.53 Aligned_cols=441 Identities=47% Similarity=0.732 Sum_probs=376.2
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEe
Q 001155 384 NNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFL 463 (1136)
Q Consensus 384 ~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L 463 (1136)
.|+++|||..|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||+..|...|+++..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGIL 543 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l 543 (1136)
+++....++..++..+.. +.++|+|+|||++.....+...+. ....+++||||||||+++|||+||+.|..|..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~--~~~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKD--GKIKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 999888777776666543 679999999999975332333332 345699999999999999999999999999999
Q ss_pred hccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhh--------hHHHHHHHHHh-------cccccch
Q 001155 544 KQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM--------DCEKVAERLQV-------GLSYGHF 608 (1136)
Q Consensus 544 ~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~--------~~e~lae~L~~-------~l~~~~~ 608 (1136)
+..+|++|+++||||+++.+..++...+++..+.++..+++++|+.. ..+.+.+.+.. ++.....
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~ 236 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSR 236 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcH
Confidence 99999999999999999999999999999999999999999998862 12334444431 2222333
Q ss_pred hhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcc
Q 001155 609 FLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGR 688 (1136)
Q Consensus 609 ~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGR 688 (1136)
.....+...+...|+.+..|||+|+.++|..+++.|.+|+++|||||++|+||||+|+|++||||++|+|+++|+||+||
T Consensus 237 ~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GR 316 (470)
T TIGR00614 237 KKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGR 316 (470)
T ss_pred HHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcC
Confidence 45566777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhh
Q 001155 689 AGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVH 768 (1136)
Q Consensus 689 AGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~y 768 (1136)
|||+|.+|.|++||++.|...+++++.+.... .. +.....+..++.||.+...|||.++++|
T Consensus 317 aGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~crr~~l~~~ 378 (470)
T TIGR00614 317 AGRDGLPSECHLFYAPADINRLRRLLMEEPDG-----------------QQ-RTYKLKLYEMMEYCLNSSTCRRLILLSH 378 (470)
T ss_pred cCCCCCCceEEEEechhHHHHHHHHHhcCCch-----------------hH-HHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 99999999999999999999999998653210 01 1112234555566666789999999999
Q ss_pred hCCCC-----CCccccCCCCCCCCCCc-------ccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhccc
Q 001155 769 FGEKF-----DSAHCKKTCDNCSKIKS-------FIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRH 836 (1136)
Q Consensus 769 Fge~~-----~~~~C~~~CDnC~~~~~-------~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~ 836 (1136)
|||.. ....|..+||||..... ....|+|.+|+++++++.++++++|..+++++|+|++++++.+.+|
T Consensus 379 f~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 458 (470)
T TIGR00614 379 FGEKQLNKSFGIMGTEKCCDNCCKRLDYKTKDVTDKVYDFGPQAQKALSAVGRLNQKFGMGYPIDFLRGSNSQKLRDRGF 458 (470)
T ss_pred cCCcccccccccccCCCCCCCCCCccccccCCCChhHhhHHHHHHHHHHHHHHhcCCCchhhhHHHHhCCcchhHHhcCC
Confidence 99963 23346667888765332 2346899999999999999999999999999999999999999999
Q ss_pred ccccccCCccc
Q 001155 837 ETLSLHGAGKH 847 (1136)
Q Consensus 837 ~~~~~~G~gk~ 847 (1136)
+++++||.||+
T Consensus 459 ~~~~~~g~~~~ 469 (470)
T TIGR00614 459 RKHSLYGRGKD 469 (470)
T ss_pred CcCCccCCCCC
Confidence 99999999985
No 8
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5.5e-68 Score=584.26 Aligned_cols=398 Identities=41% Similarity=0.682 Sum_probs=342.0
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc
Q 001155 379 KKLEANNKKVFGNHSFR-PNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lr-piQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
..+.++|+++||+++|. +.|.+|+..+.. .+|+.|+||||+|||||||||+|+.++++|||+|+++|++||++.|..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc
Confidence 46788999999999875 799999999886 5799999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccc
Q 001155 457 NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPD 536 (1136)
Q Consensus 457 gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~ 536 (1136)
.+++.-|++.++..++..++.+|.......+++|.|||+... +.|...+..+.....++++|+|||||+++|||||||+
T Consensus 85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt-~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAAT-DGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhh-hhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 999999999999999999999999888899999999999975 7788888888888889999999999999999999999
Q ss_pred hhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceE-EecccCCCCchhhhHH----------HHHHHHHhc---
Q 001155 537 YQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCI-IFRQSFNRPNLWMDCE----------KVAERLQVG--- 602 (1136)
Q Consensus 537 y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~-i~~~s~~r~nl~~~~e----------~lae~L~~~--- 602 (1136)
|.+|+.++..++++|.++||||+++.|++||...|.+.+++ +|.++..|.|++++.. .+++.-...
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999998875 6888889999984321 122222111
Q ss_pred ---------------ccccchh-hHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC
Q 001155 603 ---------------LSYGHFF-LLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 666 (1136)
Q Consensus 603 ---------------l~~~~~~-~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~ 666 (1136)
+.|.... ....+...+...|+++..||+||...+|.++++.|+++++.||+||..||||||+|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 1222211 123333445567999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHH
Q 001155 667 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTEN 746 (1136)
Q Consensus 667 V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~ 746 (1136)
||||||+++|.|+..|||+.|||||||.++.|-+||+..|...+..|+......-. . .....-..+..+..
T Consensus 324 VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklr--------e-k~~ke~~~k~~I~~ 394 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLR--------E-KAKKEMQIKSIITG 394 (641)
T ss_pred eeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHH--------H-hcchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875432100 0 00111234455677
Q ss_pred HHHHHHHHHhcHHHHHHHHHhhhCCCCCCccccCCCCCCCCCC
Q 001155 747 LLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIK 789 (1136)
Q Consensus 747 l~~mv~yc~~~~~CRR~~ll~yFge~~~~~~C~~~CDnC~~~~ 789 (1136)
+..|++||+. ..||+..+..|||+... .|.++||.|.++.
T Consensus 395 F~k~~eFCE~-~~CRH~~ia~fFgD~~p--~ckg~cd~c~~p~ 434 (641)
T KOG0352|consen 395 FAKMLEFCES-ARCRHVSIASFFDDTEC--PCKTNCDYCRDPT 434 (641)
T ss_pred HHHHHHHHHH-cccchHHHHHhcCCCCC--CCCCCccccCCHH
Confidence 8899999997 58999999999999743 6888888887654
No 9
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-45 Score=426.95 Aligned_cols=328 Identities=23% Similarity=0.311 Sum_probs=266.7
Q ss_pred CCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------------CCcEEE
Q 001155 371 SSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------------PGITLV 438 (1136)
Q Consensus 371 ~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------------~g~~LV 438 (1136)
....+++++.+..+++.. ||..|+|||.+.++.++.|+|++.+|.||+||||+|+||++++ ++++||
T Consensus 92 ~f~~~~ls~~~~~~lk~~-g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQ-GFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhc-CCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 344778889999999888 9999999999999999999999999999999999999999853 457999
Q ss_pred EccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhc
Q 001155 439 ISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAREL 514 (1136)
Q Consensus 439 IsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~ 514 (1136)
++|||+|+.|....+..+ +++..+++|+.....|...+.+ +.+|+|+||++|. |++......+ ..
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~------gvdiviaTPGRl~--d~le~g~~~l---~~ 239 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER------GVDVVIATPGRLI--DLLEEGSLNL---SR 239 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc------CCcEEEeCChHHH--HHHHcCCccc---cc
Confidence 999999999888888776 5668999999999888877664 8999999999997 6665544333 45
Q ss_pred cceeeeeccccccccCCCCccchhhhhhhhcc-CCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccC----CCCchh
Q 001155 515 LARIVIDEAHCVSQWGHDFRPDYQGLGILKQK-FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSF----NRPNLW 589 (1136)
Q Consensus 515 l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~-~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~----~r~nl~ 589 (1136)
+.++|+||||+|+++| |+++++.| +.+. .+..+++++|||.|..++.....+|+ ....+..... ...++.
T Consensus 240 v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~ 314 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIR 314 (519)
T ss_pred eeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchh
Confidence 9999999999999999 99998765 4444 33457999999999999998888887 3322222211 122222
Q ss_pred ---------hhHHHHHHHHHh---------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceE
Q 001155 590 ---------MDCEKVAERLQV---------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651 (1136)
Q Consensus 590 ---------~~~e~lae~L~~---------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~V 651 (1136)
.....+.+.|.. ++++.......++...+...++++..+||++++.+|..+++.|++|+..|
T Consensus 315 qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~v 394 (519)
T KOG0331|consen 315 QIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPV 394 (519)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcce
Confidence 111122222222 22333334556677777777899999999999999999999999999999
Q ss_pred EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 652 LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++||+..+......++.
T Consensus 395 LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~ 458 (519)
T KOG0331|consen 395 LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIK 458 (519)
T ss_pred EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877666553
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-44 Score=439.71 Aligned_cols=328 Identities=22% Similarity=0.270 Sum_probs=253.5
Q ss_pred CCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----------CCcEE
Q 001155 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 437 (1136)
Q Consensus 369 ~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----------~g~~L 437 (1136)
.|....| .+.+.+.+++. ||..|+|+|.++|+.+++|+|+|++||||+|||++|+||++.. +..+|
T Consensus 131 ~f~~~~l--~~~l~~~l~~~-g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~L 207 (545)
T PTZ00110 131 SFEYTSF--PDYILKSLKNA-GFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVL 207 (545)
T ss_pred CHhhcCC--CHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 4443333 47788888876 9999999999999999999999999999999999999999743 35699
Q ss_pred EEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhh
Q 001155 438 VISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARE 513 (1136)
Q Consensus 438 VIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~ 513 (1136)
||+||++|+.|+...+.++ ++++.++.|+.....+...+.. .++|+|+||++|. +++.+... ...
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~------~~~IlVaTPgrL~--d~l~~~~~---~l~ 276 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR------GVEILIACPGRLI--DFLESNVT---NLR 276 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc------CCCEEEECHHHHH--HHHHcCCC---Chh
Confidence 9999999999988888776 5778888888877666554442 7899999999996 55544322 234
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCC---CCchh-
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFN---RPNLW- 589 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~---r~nl~- 589 (1136)
.+++|||||||++.+|| |++.++.|. ....++.+++++|||++..+.......+......+...... ..++.
T Consensus 277 ~v~~lViDEAd~mld~g--f~~~i~~il--~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMG--FEPQIRKIV--SQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred hCcEEEeehHHhhhhcc--hHHHHHHHH--HhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeE
Confidence 59999999999999998 887766552 23346788999999999887654444443222222111111 01111
Q ss_pred --------hhHHHHHHHHHh--------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 001155 590 --------MDCEKVAERLQV--------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIIC 653 (1136)
Q Consensus 590 --------~~~e~lae~L~~--------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLV 653 (1136)
.....+.+.+.. +++.......+.+...+...|+.+..+||+|++.+|..+++.|++|+++|||
T Consensus 353 ~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILV 432 (545)
T PTZ00110 353 EVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMI 432 (545)
T ss_pred EEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEE
Confidence 111222222222 2233334456667777778899999999999999999999999999999999
Q ss_pred eeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 654 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 654 AT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
||+++++|||+|+|++|||||+|.++++|+||+||+||.|..|.|++|+++.|......++
T Consensus 433 aTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~ 493 (545)
T PTZ00110 433 ATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLV 493 (545)
T ss_pred EcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887666554
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-44 Score=426.87 Aligned_cols=327 Identities=19% Similarity=0.261 Sum_probs=251.5
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-------------CC
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-------------PG 434 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-------------~g 434 (1136)
..|+ ++++++.+.+.+.+. ||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. ..
T Consensus 8 ~~f~--~~~l~~~l~~~l~~~-g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~ 84 (423)
T PRK04837 8 QKFS--DFALHPQVVEALEKK-GFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQP 84 (423)
T ss_pred CCHh--hCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCc
Confidence 4555 456779999999875 9999999999999999999999999999999999999999732 25
Q ss_pred cEEEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhh
Q 001155 435 ITLVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN 510 (1136)
Q Consensus 435 ~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~ 510 (1136)
++|||+|+++|+.|+++.+..+ ++++..+.|+.....+...+. ..++|+|+||++|. +.+.... .
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~TP~~l~--~~l~~~~---~ 153 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE------SGVDILIGTTGRLI--DYAKQNH---I 153 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEECHHHHH--HHHHcCC---c
Confidence 7999999999999987776554 788888988877666554433 37899999999996 4443322 2
Q ss_pred hhhccceeeeeccccccccCCCCccchhhhhhhhccCC---CCCEEEEeeccchhhHHHHHHHhcCcceEEecccC-CCC
Q 001155 511 ARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP---NTPVLALTATATASVKEDVVQALGLVNCIIFRQSF-NRP 586 (1136)
Q Consensus 511 ~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p---~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~-~r~ 586 (1136)
....+++|||||||++.+|| |..++..+ ....| ..+.+++|||++..+...+...+.....+.+.... ...
T Consensus 154 ~l~~v~~lViDEad~l~~~~--f~~~i~~i---~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~ 228 (423)
T PRK04837 154 NLGAIQVVVLDEADRMFDLG--FIKDIRWL---FRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGH 228 (423)
T ss_pred ccccccEEEEecHHHHhhcc--cHHHHHHH---HHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCC
Confidence 23569999999999999998 66555443 33333 34578999999998887776666433322221111 111
Q ss_pred chh---------hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceE
Q 001155 587 NLW---------MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651 (1136)
Q Consensus 587 nl~---------~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~V 651 (1136)
++. .....+...+.. +++.........++..+...|+.+..+||+|+..+|..+++.|++|+++|
T Consensus 229 ~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~v 308 (423)
T PRK04837 229 RIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDI 308 (423)
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcE
Confidence 110 111222222221 22223334456677777788999999999999999999999999999999
Q ss_pred EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 652 LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
||||+++++|||+|++++|||||+|.++++|+||+||+||.|+.|.|++|+.+.|...+..+
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877665554
No 12
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.3e-44 Score=431.61 Aligned_cols=326 Identities=23% Similarity=0.289 Sum_probs=245.8
Q ss_pred CCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh-------------CCCc
Q 001155 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI-------------CPGI 435 (1136)
Q Consensus 369 ~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~-------------~~g~ 435 (1136)
.|.. +.+.+.+...+++. ||..|+|+|.++|+.++.|+|++++||||+|||++|++|++. .+++
T Consensus 122 ~f~~--~~l~~~l~~~L~~~-g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 122 SFSS--CGLPPKLLLNLETA-GYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred CHHh--CCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 4543 34558888988775 999999999999999999999999999999999999999974 2457
Q ss_pred EEEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhh
Q 001155 436 TLVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA 511 (1136)
Q Consensus 436 ~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~ 511 (1136)
+|||+||++|+.|+...+..+ ++.+..+.|+.....+...+. .+++|+|+||++|. +++.+.. ..
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~------~~~~IiV~TPgrL~--~~l~~~~---~~ 267 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQ------QGVELIVGTPGRLI--DLLSKHD---IE 267 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhc------CCCCEEEECHHHHH--HHHHcCC---cc
Confidence 999999999998776666554 466777777766655543332 37899999999996 5554432 22
Q ss_pred hhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh--
Q 001155 512 RELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-- 589 (1136)
Q Consensus 512 ~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-- 589 (1136)
...+++|||||||+|.+|| |++.+..+ ...+++.+++++|||+++.+.......+. ....+......+++..
T Consensus 268 l~~v~~lViDEad~ml~~g--f~~~i~~i---~~~l~~~q~l~~SATl~~~v~~l~~~~~~-~~~~i~~~~~~~~~~~v~ 341 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERG--FRDQVMQI---FQALSQPQVLLFSATVSPEVEKFASSLAK-DIILISIGNPNRPNKAVK 341 (518)
T ss_pred chheeEEEeecHHHHhhcc--hHHHHHHH---HHhCCCCcEEEEEeeCCHHHHHHHHHhCC-CCEEEEeCCCCCCCccee
Confidence 4558999999999999998 88776543 44557889999999999987654433332 2222221222222111
Q ss_pred ---------hhHHHHHHHHHh-------cc-cccchhhHHHHHHHHh-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceE
Q 001155 590 ---------MDCEKVAERLQV-------GL-SYGHFFLLKEFYVVSL-ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651 (1136)
Q Consensus 590 ---------~~~e~lae~L~~-------~l-~~~~~~~~~~~~~~l~-~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~V 651 (1136)
.....+.+.+.. .+ +.........+...+. ..|+.+..|||+|+..+|..+++.|++|+++|
T Consensus 342 q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~I 421 (518)
T PLN00206 342 QLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPV 421 (518)
T ss_pred EEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCE
Confidence 112233333332 11 2222223344444443 35889999999999999999999999999999
Q ss_pred EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 652 LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
||||++++||||+|+|++|||||+|.++++|+||+|||||.|..|.+++|++..|...+..++
T Consensus 422 LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 422 IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876655554
No 13
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=395.03 Aligned_cols=328 Identities=22% Similarity=0.259 Sum_probs=254.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
++.+.+.+.+++++. ||+.|+++|+++||.++.|+|+|+.|.||||||.+|.||++.. ...++|++|+|+|+.
T Consensus 65 dLgv~~~L~~ac~~l-~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 65 DLGVHPELLEACQEL-GWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQ 143 (476)
T ss_pred hcCcCHHHHHHHHHh-CcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHH
Confidence 566779999999888 9999999999999999999999999999999999999999854 467999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHH-HHHhhhhhhccceeeeec
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR-QLESLNARELLARIVIDE 522 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r-~l~~l~~~~~l~lVVIDE 522 (1136)
|+...+..+ |+++..+.|+++...+...+.+ .++|||+||++|. +.+.+ +..+ ...++++|+||
T Consensus 144 QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k------kPhilVaTPGrL~--dhl~~Tkgf~---le~lk~LVlDE 212 (476)
T KOG0330|consen 144 QIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK------KPHILVATPGRLW--DHLENTKGFS---LEQLKFLVLDE 212 (476)
T ss_pred HHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc------CCCEEEeCcHHHH--HHHHhccCcc---HHHhHHHhhch
Confidence 888887776 7899999999998887776654 8999999999997 55542 2222 34489999999
Q ss_pred cccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCC-CC--chh---------h
Q 001155 523 AHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFN-RP--NLW---------M 590 (1136)
Q Consensus 523 AH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~-r~--nl~---------~ 590 (1136)
||+++++. |.+....| ++...+..+.+++|||++..+.+-... .+..+..+..+.. +. .+. .
T Consensus 213 ADrlLd~d--F~~~ld~I--Lk~ip~erqt~LfsATMt~kv~kL~ra--sl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~ 286 (476)
T KOG0330|consen 213 ADRLLDMD--FEEELDYI--LKVIPRERQTFLFSATMTKKVRKLQRA--SLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD 286 (476)
T ss_pred HHhhhhhh--hHHHHHHH--HHhcCccceEEEEEeecchhhHHHHhh--ccCCCeEEeccchhcchHHhhhheEeccccc
Confidence 99998854 77766554 333335788999999999998775533 3333332222110 00 000 0
Q ss_pred hHHHHHHHHHh-----cccc-cchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC
Q 001155 591 DCEKVAERLQV-----GLSY-GHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664 (1136)
Q Consensus 591 ~~e~lae~L~~-----~l~~-~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl 664 (1136)
..-.+...|.. .+.+ ........+...+...|+.+..+||.|++..|...++.|++|...|||||+++++|+|+
T Consensus 287 K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 287 KDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred cchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 00112222222 1111 22222344455566889999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHH---HHHhcCcC
Q 001155 665 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVK---HMISQGVA 719 (1136)
Q Consensus 665 P~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~---~li~~~~~ 719 (1136)
|.|++|||||+|.+..+|+||+||+||.|.+|.+|.|.+..|+..+. +.+.+.++
T Consensus 367 p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 367 PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998876554 44545443
No 14
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=436.80 Aligned_cols=420 Identities=20% Similarity=0.231 Sum_probs=326.2
Q ss_pred CCCCccccCCCceecccccccccccccCCCCCcccccccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCcc
Q 001155 298 TPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPW 377 (1136)
Q Consensus 298 ~p~~~~~~~~~l~f~~~~~l~~~~~~~~p~~s~r~~~~~~e~l~vp~~~~~~~~~~~~~i~i~~~~~~~~~~w~~~~fp~ 377 (1136)
.-.+..++++.+.|.++.++|++..|.+|.|+.+...+.|+++++|.++..+....+++..+.. .+.|....|.
T Consensus 232 ~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~ise-----lP~Wnq~aF~- 305 (1674)
T KOG0951|consen 232 LEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISE-----LPKWNQPAFF- 305 (1674)
T ss_pred cccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecC-----Ccchhhhhcc-
Confidence 4457778899999999999999999999999999999999999999998776555566555443 3778876665
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC-CcEEEEccCCChHHHHHHhhhhhC--------------CCcEEEEccC
Q 001155 378 TKKLEANNKKVFGNHSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPL 442 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g-~dvLV~APTGsGKTl~y~LpaL~~--------------~g~~LVIsPt 442 (1136)
|..+|+++|..+..+++.+ .++++|||||+|||+++++.+|.. ..+++||+|+
T Consensus 306 ------------g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 306 ------------GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred ------------cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 8899999999999999974 689999999999999999999953 3479999999
Q ss_pred hhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcccee
Q 001155 443 VSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518 (1136)
Q Consensus 443 raL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lV 518 (1136)
++|+++++..|.++ ||.|..++|+.+...++. ..++|+|+|||+| |.++|+-.++...+.++++
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---------eeTqVIV~TPEK~---DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---------EETQVIVTTPEKW---DIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---------hcceeEEeccchh---hhhhcccCchhHHHHHHHH
Confidence 99999999988764 999999999988766543 3789999999999 9999998888888889999
Q ss_pred eeeccccccccCCCCccchhh------hhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce--EEecccCCCCchh-
Q 001155 519 VIDEAHCVSQWGHDFRPDYQG------LGILKQKFPNTPVLALTATATASVKEDVVQALGLVNC--IIFRQSFNRPNLW- 589 (1136)
Q Consensus 519 VIDEAH~ls~wGhdfR~~y~~------L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~--~i~~~s~~r~nl~- 589 (1136)
||||+|++ ||-|+.... +.........++++|||||+|++ +|+..+|+.... ..|..++.+..+.
T Consensus 442 IIDEIHLL----hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~q 515 (1674)
T KOG0951|consen 442 IIDEIHLL----HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQ 515 (1674)
T ss_pred hhhhhhhc----ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccc
Confidence 99999998 778877642 33334445578999999999999 788888876553 3344455555444
Q ss_pred -----------h--------hHHHHHHHHH--hcccccchhh-----HH-----------------------HHHHH---
Q 001155 590 -----------M--------DCEKVAERLQ--VGLSYGHFFL-----LK-----------------------EFYVV--- 617 (1136)
Q Consensus 590 -----------~--------~~e~lae~L~--~~l~~~~~~~-----~~-----------------------~~~~~--- 617 (1136)
. ..+++.+... +.+.+.|... .+ ++...
T Consensus 516 q~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~ 595 (1674)
T KOG0951|consen 516 QYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAG 595 (1674)
T ss_pred eEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhh
Confidence 0 0011111111 1122221110 00 00000
Q ss_pred ------H-hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEE----EcCCCC------CHh
Q 001155 618 ------S-LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----HHSLPK------SIE 680 (1136)
Q Consensus 618 ------l-~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VI----h~d~P~------Sie 680 (1136)
+ --..+++++|||||++.+|..+++.|++|+++|+|+|.+++||||+|++.+|| .|+.-+ ++.
T Consensus 596 ~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~ 675 (1674)
T KOG0951|consen 596 QAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPL 675 (1674)
T ss_pred cccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHH
Confidence 0 01246799999999999999999999999999999999999999999999999 444333 788
Q ss_pred HHHHHhcccCCCCC--CcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhc
Q 001155 681 GYHQECGRAGRDGQ--RSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCEND 757 (1136)
Q Consensus 681 ~YiQriGRAGR~G~--~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~ 757 (1136)
+.+||.|||||.+. .|..+++...++++++..++++++|++|++.+...+.- ..+++-. ++++.++++|...+
T Consensus 676 dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~l---naeiv~G-v~~~~d~~~wl~yT 750 (1674)
T KOG0951|consen 676 DVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCL---NAEIVLG-VRSARDAVDWLGYT 750 (1674)
T ss_pred HHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhh---hhhhhcc-hhhHHHHHhhhcce
Confidence 99999999999876 78999999999999999999999999998876653311 1122222 56677777777443
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-43 Score=420.39 Aligned_cols=322 Identities=19% Similarity=0.235 Sum_probs=247.1
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------------CCcEEEEcc
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 441 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------------~g~~LVIsP 441 (1136)
.+.+++.+...+.+. ||..|+++|.++|+.++.|+|+|++||||+|||++|++|++.. ..++|||+|
T Consensus 5 ~l~l~~~l~~~l~~~-g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~P 83 (456)
T PRK10590 5 SLGLSPDILRAVAEQ-GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTP 83 (456)
T ss_pred HcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeC
Confidence 455678899999886 9999999999999999999999999999999999999999843 126999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
|++|+.|+.+.+..+ ++.+..+.|+.+...+...+. +.++|+|+||++|. +.+.... .....+++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~IiV~TP~rL~--~~~~~~~---~~l~~v~~ 152 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR------GGVDVLVATPGRLL--DLEHQNA---VKLDQVEI 152 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc------CCCcEEEEChHHHH--HHHHcCC---cccccceE
Confidence 999999998888765 677888889888776554432 47899999999996 4333222 23456999
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEec-ccCCCCchh------
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFR-QSFNRPNLW------ 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~-~s~~r~nl~------ 589 (1136)
|||||||++++|| |...++. +...++ ..++++||||++..+.......+.....+.+. ......++.
T Consensus 153 lViDEah~ll~~~--~~~~i~~---il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 227 (456)
T PRK10590 153 LVLDEADRMLDMG--FIHDIRR---VLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFV 227 (456)
T ss_pred EEeecHHHHhccc--cHHHHHH---HHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEc
Confidence 9999999999988 5444443 333343 56799999999998766555554433222211 111111111
Q ss_pred ---hhHHHHHHHHH-----h-cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccc
Q 001155 590 ---MDCEKVAERLQ-----V-GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660 (1136)
Q Consensus 590 ---~~~e~lae~L~-----~-~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~ 660 (1136)
...+.+...+. . +++.........+...+...++.+..|||+|+..+|..+++.|++|+++|||||+++++
T Consensus 228 ~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~r 307 (456)
T PRK10590 228 DKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 (456)
T ss_pred CHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhc
Confidence 11111222222 1 22223334456677777788999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHH
Q 001155 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKH 712 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~ 712 (1136)
|||+|+|++||||++|.++++|+||+|||||.|..|.|++|+...|...++.
T Consensus 308 GiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ 359 (456)
T PRK10590 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 (456)
T ss_pred CCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887665444
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.9e-43 Score=419.76 Aligned_cols=327 Identities=20% Similarity=0.238 Sum_probs=254.3
Q ss_pred CCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccC
Q 001155 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 442 (1136)
Q Consensus 369 ~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPt 442 (1136)
.|+ .+++.+.+...+.+. ||..|+|+|.+||+.++.|+|++++||||+|||++|++|++.. ...+|||+||
T Consensus 5 ~f~--~l~l~~~l~~~l~~~-g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Pt 81 (460)
T PRK11776 5 AFS--TLPLPPALLANLNEL-GYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPT 81 (460)
T ss_pred Chh--hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCC
Confidence 455 345668888888776 9999999999999999999999999999999999999999864 3369999999
Q ss_pred hhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 443 VSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 443 raL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
++|+.|+.+.+..+ ++.+..++|+.+...+...+. ..++|+|+||++|. +.+.+.. .....+++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~------~~~~IvV~Tp~rl~--~~l~~~~---~~l~~l~~ 150 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE------HGAHIIVGTPGRIL--DHLRKGT---LDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc------CCCCEEEEChHHHH--HHHHcCC---ccHHHCCE
Confidence 99999988877654 578888999988776655443 37899999999996 4443321 12345899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh--------
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-------- 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-------- 589 (1136)
|||||||++.++| |...+..+ +....+..++++||||+++.+.......+.-...+.+......+.+.
T Consensus 151 lViDEad~~l~~g--~~~~l~~i--~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 226 (460)
T PRK11776 151 LVLDEADRMLDMG--FQDAIDAI--IRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSP 226 (460)
T ss_pred EEEECHHHHhCcC--cHHHHHHH--HHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCc
Confidence 9999999999988 66665543 22333467899999999998766555554433323222221111111
Q ss_pred -hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccc
Q 001155 590 -MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662 (1136)
Q Consensus 590 -~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GI 662 (1136)
...+.+...+.. +++.........++..+...++.+..|||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 227 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGi 306 (460)
T PRK11776 227 DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGL 306 (460)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccccc
Confidence 112223333321 2233334456677778888899999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 663 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 663 DlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
|+|++++||+|++|.+++.|+||+||+||.|..|.|++|+.+.|...+..+
T Consensus 307 Di~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 307 DIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred chhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999887665544
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-43 Score=426.54 Aligned_cols=324 Identities=18% Similarity=0.253 Sum_probs=253.2
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-------------CCcEEEEc
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-------------PGITLVIS 440 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-------------~g~~LVIs 440 (1136)
.+.+.+.+.+.|.+. ||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. ..++|||+
T Consensus 13 ~l~l~~~l~~~L~~~-g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~ 91 (572)
T PRK04537 13 SFDLHPALLAGLESA-GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILA 91 (572)
T ss_pred hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEe
Confidence 455778999998876 9999999999999999999999999999999999999999852 25799999
Q ss_pred cChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 441 PLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 441 PtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
||++|+.|++..+..+ ++.+..++|+.....+...+. ..++|||+||++|. +.+.+.. ......++
T Consensus 92 PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~------~~~dIiV~TP~rL~--~~l~~~~--~~~l~~v~ 161 (572)
T PRK04537 92 PTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ------QGVDVIIATPGRLI--DYVKQHK--VVSLHACE 161 (572)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh------CCCCEEEECHHHHH--HHHHhcc--ccchhhee
Confidence 9999999999888775 678899999988877665544 37899999999996 4443211 11234589
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhccCC---CCCEEEEeeccchhhHHHHHHHhcCcceEEeccc-CCCCchh---
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP---NTPVLALTATATASVKEDVVQALGLVNCIIFRQS-FNRPNLW--- 589 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p---~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s-~~r~nl~--- 589 (1136)
+|||||||++.+|| |...+..| ...++ ..++++||||++..+...+...+.....+.+... ....++.
T Consensus 162 ~lViDEAh~lld~g--f~~~i~~i---l~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~ 236 (572)
T PRK04537 162 ICVLDEADRMFDLG--FIKDIRFL---LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRI 236 (572)
T ss_pred eeEecCHHHHhhcc--hHHHHHHH---HHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEE
Confidence 99999999999988 66555443 33333 5789999999999888777766654333322211 1111111
Q ss_pred ------hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecc
Q 001155 590 ------MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVA 657 (1136)
Q Consensus 590 ------~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~a 657 (1136)
.....+...+.. +++.........++..+...++.+..|||+|+..+|..+++.|++|+++|||||++
T Consensus 237 ~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv 316 (572)
T PRK04537 237 YFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV 316 (572)
T ss_pred EecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh
Confidence 111222222221 22233334566777778888999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 658 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 658 lg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
+++|||+|+|++|||||+|.++++|+||+||+||.|..|.|++|+...+...+..+
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877665544
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.7e-43 Score=413.77 Aligned_cols=323 Identities=19% Similarity=0.282 Sum_probs=249.5
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----------CCcEEEEccCh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLV 443 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----------~g~~LVIsPtr 443 (1136)
++.+.+.+.+.+.+. ||..|+++|.++|+.++.|+|+|++||||+|||++|++|++.. ..++|||+|++
T Consensus 5 ~l~l~~~l~~~l~~~-g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~ 83 (434)
T PRK11192 5 ELELDESLLEALQDK-GYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTR 83 (434)
T ss_pred hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcH
Confidence 445668888888886 9999999999999999999999999999999999999999853 35799999999
Q ss_pred hhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceee
Q 001155 444 SLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519 (1136)
Q Consensus 444 aL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVV 519 (1136)
+|+.|+.+.+..+ ++++..++|+.....+...+. ..++|+|+||++|. +.+.... .....+++||
T Consensus 84 eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~rl~--~~~~~~~---~~~~~v~~lV 152 (434)
T PRK11192 84 ELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS------ENQDIVVATPGRLL--QYIKEEN---FDCRAVETLI 152 (434)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHH--HHHHcCC---cCcccCCEEE
Confidence 9999887776654 788999999988877665543 37899999999996 4443221 1234589999
Q ss_pred eeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccC--CCCchh--------
Q 001155 520 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSF--NRPNLW-------- 589 (1136)
Q Consensus 520 IDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~--~r~nl~-------- 589 (1136)
|||||++.+|| |...+..+.. ......++++||||++.....++...+......+..... .+.++.
T Consensus 153 iDEah~~l~~~--~~~~~~~i~~--~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 228 (434)
T PRK11192 153 LDEADRMLDMG--FAQDIETIAA--ETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADD 228 (434)
T ss_pred EECHHHHhCCC--cHHHHHHHHH--hCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCC
Confidence 99999999998 7777665432 222356799999999876666666655332222211111 111111
Q ss_pred --hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccc
Q 001155 590 --MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661 (1136)
Q Consensus 590 --~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~G 661 (1136)
.....+...+.. +++.........+...+...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 229 ~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~G 308 (434)
T PRK11192 229 LEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARG 308 (434)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 112222333322 222233345666777777889999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHH
Q 001155 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKH 712 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~ 712 (1136)
||+|++++||||++|.+.+.|+||+||+||.|..|.+++|+...|...+..
T Consensus 309 iDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 309 IDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 359 (434)
T ss_pred ccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877655443
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-42 Score=417.08 Aligned_cols=328 Identities=19% Similarity=0.247 Sum_probs=251.3
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-------------CCcEEEE
Q 001155 373 WDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-------------PGITLVI 439 (1136)
Q Consensus 373 ~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-------------~g~~LVI 439 (1136)
..+.+++.+.++|.+ +||..|+++|.++|+.++.|+|+|+++|||+|||++|++|++.. ..++|||
T Consensus 90 ~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 90 HDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred hHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 356678999999988 59999999999999999999999999999999999999999843 3579999
Q ss_pred ccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcc
Q 001155 440 SPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515 (1136)
Q Consensus 440 sPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l 515 (1136)
+||++|+.|+...+..+ ++.+..+.|+.+...+...+.. ..++|||+||++|. +.+.+ .......+
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~-----~~~~Iiv~TP~~Ll--~~~~~---~~~~l~~l 238 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEA-----RFCDILVATPGRLL--DFNQR---GEVHLDMV 238 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhC-----CCCCEEEECHHHHH--HHHHc---CCcccccC
Confidence 99999999999888765 6888888898877665544332 47899999999995 33322 12234568
Q ss_pred ceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc-CCCCchh-----
Q 001155 516 ARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS-FNRPNLW----- 589 (1136)
Q Consensus 516 ~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s-~~r~nl~----- 589 (1136)
++|||||||++.++| |.+.++.+..........+++++|||++..+......++.....+.+... ...+++.
T Consensus 239 ~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 316 (475)
T PRK01297 239 EVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYA 316 (475)
T ss_pred ceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEE
Confidence 999999999999987 66666555333322335689999999998877655554432221111111 1111111
Q ss_pred ----hhHHHHHHHHH------hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccc
Q 001155 590 ----MDCEKVAERLQ------VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFG 659 (1136)
Q Consensus 590 ----~~~e~lae~L~------~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg 659 (1136)
.....+...+. .+++.........++..+...|+.+..+||+|+..+|..+++.|++|+++|||||++++
T Consensus 317 ~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~ 396 (475)
T PRK01297 317 VAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAG 396 (475)
T ss_pred ecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccc
Confidence 11112222222 12233334455666777778899999999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 660 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 660 ~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
+|||+|++++||+|++|.|+.+|+||+|||||.|..|.+++|++..|...+.++
T Consensus 397 ~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~ 450 (475)
T PRK01297 397 RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEI 450 (475)
T ss_pred cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876655443
No 20
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=426.06 Aligned_cols=388 Identities=21% Similarity=0.279 Sum_probs=293.7
Q ss_pred CccccCCCceecccccccccccccCCCCCcccccccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCcchHH
Q 001155 301 PAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKK 380 (1136)
Q Consensus 301 ~~~~~~~~l~f~~~~~l~~~~~~~~p~~s~r~~~~~~e~l~vp~~~~~~~~~~~~~i~i~~~~~~~~~~w~~~~fp~s~~ 380 (1136)
+.+++...+.|....+. .+.+..+|.++.+.....|+++.+|+..+.+ ....+...+..+
T Consensus 38 ~~vf~~~~~~~~~~~~~-~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdl------------------ 97 (1230)
T KOG0952|consen 38 PHVFESRGLGMTDAIFI-IGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDL------------------ 97 (1230)
T ss_pred hhHHHhhhhccchhhhh-ccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEec------------------
Confidence 44444444444333333 3347779999999999999999999986654 222333333332
Q ss_pred HHHHH-HHhhCCCCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhC-------------CCcEEEEccChhh
Q 001155 381 LEANN-KKVFGNHSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALIC-------------PGITLVISPLVSL 445 (1136)
Q Consensus 381 l~~~l-k~~fG~~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~-------------~g~~LVIsPtraL 445 (1136)
.... +.+|+|..|+.+|+++++.++. +.|+|||||||+|||.+|+|.+|.. ..++|||+|++||
T Consensus 98 -d~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKAL 176 (1230)
T KOG0952|consen 98 -DDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKAL 176 (1230)
T ss_pred -chhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHH
Confidence 1222 3567999999999999999995 7899999999999999999999843 3479999999999
Q ss_pred HHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH-hhhhhhccceeee
Q 001155 446 IQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE-SLNARELLARIVI 520 (1136)
Q Consensus 446 ~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~-~l~~~~~l~lVVI 520 (1136)
+.++++.|.+. |+.+..|+|++.....+ + ..++|||+|||+| |+++|+.. +....+.|+||||
T Consensus 177 a~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--------~~tqiiVTTPEKw---DvvTRk~~~d~~l~~~V~LviI 244 (1230)
T KOG0952|consen 177 AAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--------ADTQIIVTTPEKW---DVVTRKSVGDSALFSLVRLVII 244 (1230)
T ss_pred HHHHHHHHhhhcccccceEEEecCcchhhHHH-H--------HhcCEEEecccce---eeeeeeeccchhhhhheeeEEe
Confidence 99999999775 89999999999877655 2 2789999999999 88888775 3445577999999
Q ss_pred eccccccccCCCCccchh------hhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCc--ce-EEecccCCCCchh--
Q 001155 521 DEAHCVSQWGHDFRPDYQ------GLGILKQKFPNTPVLALTATATASVKEDVVQALGLV--NC-IIFRQSFNRPNLW-- 589 (1136)
Q Consensus 521 DEAH~ls~wGhdfR~~y~------~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~--~~-~i~~~s~~r~nl~-- 589 (1136)
||+|.| ||-|+... .++.+......+++||||||+|+. .|+..+|+.. .. ..|..+|.+..+.
T Consensus 245 DEVHlL----hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~ 318 (1230)
T KOG0952|consen 245 DEVHLL----HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQG 318 (1230)
T ss_pred eeehhh----cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeee
Confidence 999999 67777663 344555667789999999999998 7999999885 23 3444444433332
Q ss_pred ------------------hhHHHHHHHHHhc---ccccchh-----hHH---------------------HHHHHHhhcC
Q 001155 590 ------------------MDCEKVAERLQVG---LSYGHFF-----LLK---------------------EFYVVSLECG 622 (1136)
Q Consensus 590 ------------------~~~e~lae~L~~~---l~~~~~~-----~~~---------------------~~~~~l~~~g 622 (1136)
...+++.+.++.. +.+.+.. ..+ +....+..
T Consensus 319 ~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~-- 396 (1230)
T KOG0952|consen 319 FIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQ-- 396 (1230)
T ss_pred EEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHH--
Confidence 1123334444332 1111111 000 11111122
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEE----EcCCCC------CHhHHHHHhcccCCC
Q 001155 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----HHSLPK------SIEGYHQECGRAGRD 692 (1136)
Q Consensus 623 ~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VI----h~d~P~------Sie~YiQriGRAGR~ 692 (1136)
.+.++|||||...||..+++.|..|.++|||||.+++||+|+|+.-+|| .||..+ ++.+.+|.+|||||+
T Consensus 397 ~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRP 476 (1230)
T KOG0952|consen 397 QGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRP 476 (1230)
T ss_pred hhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCC
Confidence 3478999999999999999999999999999999999999999999999 555554 688999999999998
Q ss_pred C--CCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCC
Q 001155 693 G--QRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHN 729 (1136)
Q Consensus 693 G--~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~ 729 (1136)
+ ..|.++++++.+.+..|..|+.+..|+||++.+.+.
T Consensus 477 qFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~ 515 (1230)
T KOG0952|consen 477 QFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLI 515 (1230)
T ss_pred CCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHH
Confidence 6 479999999999999999999999999998866553
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-42 Score=413.73 Aligned_cols=325 Identities=22% Similarity=0.284 Sum_probs=257.5
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCC-------c-EEEEccChhh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPG-------I-TLVISPLVSL 445 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g-------~-~LVIsPtraL 445 (1136)
++.++..+.+++.+. ||..|+|+|.++||.++.|+|+++.|+||+|||++|.||++.... . +||++|||+|
T Consensus 33 ~l~l~~~ll~~l~~~-gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTREL 111 (513)
T COG0513 33 SLGLSPELLQALKDL-GFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTREL 111 (513)
T ss_pred hcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHH
Confidence 455779999999995 999999999999999999999999999999999999999985411 2 8999999999
Q ss_pred HHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 446 IQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 446 ~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
+.|..+.+..+ ++.+..+.|+.+...+...+.. +++|||+||+++. |.+.+... ....+.++|+
T Consensus 112 A~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~------~~~ivVaTPGRll--D~i~~~~l---~l~~v~~lVl 180 (513)
T COG0513 112 AVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR------GVDIVVATPGRLL--DLIKRGKL---DLSGVETLVL 180 (513)
T ss_pred HHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc------CCCEEEECccHHH--HHHHcCCc---chhhcCEEEe
Confidence 99888887664 4778999999998887766553 5999999999997 76666522 3345999999
Q ss_pred eccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc-C--CCCchh--------
Q 001155 521 DEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS-F--NRPNLW-------- 589 (1136)
Q Consensus 521 DEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s-~--~r~nl~-------- 589 (1136)
||||.|+++| |.++...+.. ...++.++++||||++..+.......+.-...+.+... . ...++.
T Consensus 181 DEADrmLd~G--f~~~i~~I~~--~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 181 DEADRMLDMG--FIDDIEKILK--ALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred ccHhhhhcCC--CHHHHHHHHH--hCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 9999999998 8888766532 22237899999999999776666666662222222211 1 112221
Q ss_pred -h-hHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccc
Q 001155 590 -M-DCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661 (1136)
Q Consensus 590 -~-~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~G 661 (1136)
. ....+...+.. .++......+..+...+...|+.+..+||+|++.+|.++++.|++|+++|||||+++++|
T Consensus 257 ~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRG 336 (513)
T COG0513 257 EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARG 336 (513)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhcc
Confidence 1 12222233321 222233445667778888999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccc-cHHHHHHHH
Q 001155 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS-DFIRVKHMI 714 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~-D~~~~~~li 714 (1136)
||+|+|.+|||||+|.++++|+||+||+||.|..|.++.|+.+. |...+..+.
T Consensus 337 iDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie 390 (513)
T COG0513 337 LDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIE 390 (513)
T ss_pred CCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999975 666555443
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-41 Score=417.69 Aligned_cols=324 Identities=20% Similarity=0.272 Sum_probs=252.9
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
++.+++.+.+++.+. ||..|+|+|.++|+.++.|+|+|+.||||+|||++|++|++.. ..++|||+||++|+.
T Consensus 10 ~l~L~~~ll~al~~~-G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~ 88 (629)
T PRK11634 10 DLGLKAPILEALNDL-GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAV 88 (629)
T ss_pred hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHH
Confidence 445678999999876 9999999999999999999999999999999999999999743 457999999999999
Q ss_pred HHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeec
Q 001155 448 DQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDE 522 (1136)
Q Consensus 448 dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDE 522 (1136)
|+...+..+ ++.+..++|+.....+...+. ..++|||+||++|. +.+.+... ....+++|||||
T Consensus 89 Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~------~~~~IVVgTPgrl~--d~l~r~~l---~l~~l~~lVlDE 157 (629)
T PRK11634 89 QVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR------QGPQIVVGTPGRLL--DHLKRGTL---DLSKLSGLVLDE 157 (629)
T ss_pred HHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc------CCCCEEEECHHHHH--HHHHcCCc---chhhceEEEecc
Confidence 887776654 688888999888766554443 37899999999996 55544322 234589999999
Q ss_pred cccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh---------hh
Q 001155 523 AHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW---------MD 591 (1136)
Q Consensus 523 AH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~---------~~ 591 (1136)
||++++|| |..++.. +...+| ..++++||||++..+......++.-...+.+.. ....+++. ..
T Consensus 158 Ad~ml~~g--f~~di~~---Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k 232 (629)
T PRK11634 158 ADEMLRMG--FIEDVET---IMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRK 232 (629)
T ss_pred HHHHhhcc--cHHHHHH---HHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhH
Confidence 99999988 6655443 333444 678999999999987765555544322222221 11222221 12
Q ss_pred HHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC
Q 001155 592 CEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 665 (1136)
Q Consensus 592 ~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP 665 (1136)
.+.+...|.. ++++........++..+...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 233 ~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip 312 (629)
T PRK11634 233 NEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312 (629)
T ss_pred HHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcc
Confidence 2333333332 2222333445667777888999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 666 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 666 ~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
+|++|||||+|.+++.|+||+|||||.|+.|.|++|+...+...++.+.
T Consensus 313 ~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie 361 (629)
T PRK11634 313 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361 (629)
T ss_pred cCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877666554
No 23
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=384.38 Aligned_cols=328 Identities=24% Similarity=0.333 Sum_probs=261.7
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---------------C
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---------------C 432 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---------------~ 432 (1136)
..|....|| .++...+++. ||..++|+|+++|+..++.+|+|.+|.||||||++|++|++. .
T Consensus 245 rnwEE~~~P--~e~l~~I~~~-~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 245 RNWEESGFP--LELLSVIKKP-GYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred cChhhcCCC--HHHHHHHHhc-CCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 678877766 7777877776 999999999999999999999999999999999999999873 1
Q ss_pred CCcEEEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~ 508 (1136)
++.++|++||++|++|+..+-.++ |+++..+.|+.+..++...+.. +++|+|+||++|. |.+.+.+.-
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~------gceiviatPgrLi--d~Lenr~lv 393 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM------GCEIVIATPGRLI--DSLENRYLV 393 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc------cceeeecCchHHH--HHHHHHHHH
Confidence 678999999999999887777665 7889999999999888666654 8999999999997 777766555
Q ss_pred hhhhhccceeeeeccccccccCCCCccchhhhhh-------------------hhccCC--C--CCEEEEeeccchhhHH
Q 001155 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGI-------------------LKQKFP--N--TPVLALTATATASVKE 565 (1136)
Q Consensus 509 l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~-------------------l~~~~p--~--~~iv~LSAT~~~~v~~ 565 (1136)
+. ...+||+|||+.+.++| |.++|..+.. +...|. . .+.+.||||+++.+..
T Consensus 394 l~---qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 394 LN---QCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVER 468 (673)
T ss_pred hc---cCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHH
Confidence 44 48899999999999999 8998876421 111111 1 4679999999999877
Q ss_pred HHHHHhcCcceEEecccCCCCchh-----------hhHHHHHHHHHhc------ccccchhhHHHHHHHHhhcCCeEEEE
Q 001155 566 DVVQALGLVNCIIFRQSFNRPNLW-----------MDCEKVAERLQVG------LSYGHFFLLKEFYVVSLECGHKAAFY 628 (1136)
Q Consensus 566 dI~~~L~l~~~~i~~~s~~r~nl~-----------~~~e~lae~L~~~------l~~~~~~~~~~~~~~l~~~g~~v~~~ 628 (1136)
....+|.- ...+...+..++... ....++.+.|... ++.+.......+...+.+.|+.+..|
T Consensus 469 lar~ylr~-pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tl 547 (673)
T KOG0333|consen 469 LARSYLRR-PVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTL 547 (673)
T ss_pred HHHHHhhC-CeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEe
Confidence 66666532 233333333333322 2234444444432 12222233455666677889999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHH
Q 001155 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFI 708 (1136)
Q Consensus 629 Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~ 708 (1136)
||+-++++|+.++..|+.|..+|||||+++|+|||+|+|.+||+||+++|+++|.|||||+||+|+.|.++.|+++.|-.
T Consensus 548 Hg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 548 HGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred eCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred HHHH
Q 001155 709 RVKH 712 (1136)
Q Consensus 709 ~~~~ 712 (1136)
.+..
T Consensus 628 v~yd 631 (673)
T KOG0333|consen 628 VFYD 631 (673)
T ss_pred HHHH
Confidence 4433
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4e-41 Score=394.96 Aligned_cols=328 Identities=18% Similarity=0.260 Sum_probs=246.1
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|. .+.+.+.+.+.+.+. ||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ..++|||+|
T Consensus 28 ~~~~--~l~l~~~~~~~l~~~-~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 28 DSFD--ALKLNEDLLRGIYSY-GFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred CCHh--hCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 4444 345668888888664 9999999999999999999999999999999999999998853 457999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+.|+...+... ++.+..+.|+.........+. ...+|+|+||++|. +.+.+.. .....+++
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ivv~Tp~~l~--~~l~~~~---~~l~~i~l 173 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLK------AGVHMVVGTPGRVY--DMIDKRH---LRVDDLKL 173 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHc------CCCCEEEECcHHHH--HHHHhCC---cccccccE
Confidence 999999888777665 455666677766544333322 26799999999985 4443322 23456899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh-------
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW------- 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~------- 589 (1136)
|||||||++.++| |+..+..+ +....++.+++++|||+++.+.......+.-.....+.. .....++.
T Consensus 174 vViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (401)
T PTZ00424 174 FILDEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVE 249 (401)
T ss_pred EEEecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecC
Confidence 9999999999887 55544332 344456789999999999987665555543322222111 11111110
Q ss_pred ---hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccc
Q 001155 590 ---MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660 (1136)
Q Consensus 590 ---~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~ 660 (1136)
.....+.+.+.. +++.........+...+...++.+..+||+|+..+|..+++.|++|+++|||||+++++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~ 329 (401)
T PTZ00424 250 KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLAR 329 (401)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccC
Confidence 111122222221 12223333455666667778899999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
|||+|++++||+|++|.|+.+|+||+|||||.|..|.|++|++..|...+..+
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776655
No 25
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-42 Score=385.11 Aligned_cols=328 Identities=24% Similarity=0.309 Sum_probs=250.5
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---------CCcEEEEccChh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVS 444 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---------~g~~LVIsPtra 444 (1136)
...++..++.++... ||..|+|||..+||.++-|+|++.||.||+|||.+|+||+|.+ ..++||++|||+
T Consensus 185 ~mNLSRPlLka~~~l-Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 185 SMNLSRPLLKACSTL-GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred hcccchHHHHHHHhc-CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 445667888887766 9999999999999999999999999999999999999999854 347999999999
Q ss_pred hHHHHHHHHHH---c-CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 445 LIQDQIMHLLQ---A-NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 445 L~~dqv~~L~~---~-gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
|+.|.....++ + .|.+++..|+.+...|...++. .++|+|+||++|. |.+.+.. ++ ....+..+|+
T Consensus 264 LaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs------~PDIVIATPGRlI--DHlrNs~-sf-~ldsiEVLvl 333 (691)
T KOG0338|consen 264 LAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS------RPDIVIATPGRLI--DHLRNSP-SF-NLDSIEVLVL 333 (691)
T ss_pred HHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh------CCCEEEecchhHH--HHhccCC-Cc-cccceeEEEe
Confidence 98755444333 3 7999999999999999998875 8999999999996 4443211 11 1245888999
Q ss_pred eccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-chhh--------
Q 001155 521 DEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-NLWM-------- 590 (1136)
Q Consensus 521 DEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-nl~~-------- 590 (1136)
||||+|++.| |+..+..| .+..| +.+.++||||++..+...+.-.|+-+--+.+......+ .+..
T Consensus 334 DEADRMLeeg--FademnEi---i~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~ 408 (691)
T KOG0338|consen 334 DEADRMLEEG--FADEMNEI---IRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPK 408 (691)
T ss_pred chHHHHHHHH--HHHHHHHH---HHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccc
Confidence 9999999988 77666554 44445 67899999999999877665444433223333322222 1110
Q ss_pred ---hHHH-HHHHHHhcc------cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccc
Q 001155 591 ---DCEK-VAERLQVGL------SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660 (1136)
Q Consensus 591 ---~~e~-lae~L~~~l------~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~ 660 (1136)
.-+. ++..+.... +.........+-..+--.|++++-+||.|++.+|-+.++.|++++++|||||+++++
T Consensus 409 re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsR 488 (691)
T KOG0338|consen 409 REGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASR 488 (691)
T ss_pred cccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhc
Confidence 0111 111111111 111111111122222246889999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcC
Q 001155 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQG 717 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~ 717 (1136)
|+|++.|.+||||++|.+++.|+||+||+.|+|+.|.+|.|...+|...++.++...
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999998888653
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=372.41 Aligned_cols=318 Identities=24% Similarity=0.344 Sum_probs=256.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------------C
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------------P 433 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------------~ 433 (1136)
.+|....|| ..++..+++. |+.+++|+|-+.+|.+++|+|+|.+|-||||||++|.||+++. +
T Consensus 170 ksF~eMKFP--~~~L~~lk~K-GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 170 KSFKEMKFP--KPLLRGLKKK-GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred hhhhhccCC--HHHHHHHHhc-CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 456656666 8888899886 9999999999999999999999999999999999999998742 5
Q ss_pred CcEEEEccChhhHHHHHHHHHHc-------C---CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHH
Q 001155 434 GITLVISPLVSLIQDQIMHLLQA-------N---IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLL 503 (1136)
Q Consensus 434 g~~LVIsPtraL~~dqv~~L~~~-------g---I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~ 503 (1136)
+..|||+|.|+|+.|...-+..+ | ++.....|+.+..++...+++ +.+|+|+||++|. |++.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~------GvHivVATPGRL~--DmL~ 318 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR------GVHIVVATPGRLM--DMLA 318 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc------CeeEEEcCcchHH--HHHH
Confidence 68999999999988765544332 3 556777899999998888775 8999999999997 8888
Q ss_pred HHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccC-CCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc
Q 001155 504 RQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNTPVLALTATATASVKEDVVQALGLVNCIIFRQS 582 (1136)
Q Consensus 504 r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~-p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s 582 (1136)
.+..++.. .+++++|||+++.++| |..+++.+ ...| ...+.++||||+|..++......| ..++.+.-+
T Consensus 319 KK~~sLd~---CRyL~lDEADRmiDmG--FEddir~i---F~~FK~QRQTLLFSATMP~KIQ~FAkSAL--VKPvtvNVG 388 (610)
T KOG0341|consen 319 KKIMSLDA---CRYLTLDEADRMIDMG--FEDDIRTI---FSFFKGQRQTLLFSATMPKKIQNFAKSAL--VKPVTVNVG 388 (610)
T ss_pred HhhccHHH---HHHhhhhhHHHHhhcc--chhhHHHH---HHHHhhhhheeeeeccccHHHHHHHHhhc--ccceEEecc
Confidence 88877765 7899999999999999 88887654 2333 367899999999999876555543 444443322
Q ss_pred ---CCCCchhhhHHH---------HHHHHHh-----cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHh
Q 001155 583 ---FNRPNLWMDCEK---------VAERLQV-----GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWS 645 (1136)
Q Consensus 583 ---~~r~nl~~~~e~---------lae~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~ 645 (1136)
...-++..+++- +.+-|+. +++......++.+..+++-.|+.++.+|||-++++|...++.|+
T Consensus 389 RAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr 468 (610)
T KOG0341|consen 389 RAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFR 468 (610)
T ss_pred cccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHh
Confidence 112222222222 2222332 22333334567788888899999999999999999999999999
Q ss_pred cCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 646 KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 646 ~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
.|+-+|||||++++.|+|+|++.+|||||+|..+++|+||+||+||.|+.|.+..|.+...
T Consensus 469 ~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 469 AGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999998654
No 27
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=371.43 Aligned_cols=337 Identities=23% Similarity=0.311 Sum_probs=262.3
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---------CC--cE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------PG--IT 436 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---------~g--~~ 436 (1136)
..|++..+|+++++.+++.+. ||..++|+|..+||.++.++|++|-|+||||||++|++|++.. ++ -+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~-GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDES-GFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred cchhhcCCCccHHHHHHHHhc-CCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 579999999999999998876 9999999999999999999999999999999999999999832 23 58
Q ss_pred EEEccChhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhh
Q 001155 437 LVISPLVSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA 511 (1136)
Q Consensus 437 LVIsPtraL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~ 511 (1136)
|||+|||+|+.|+...+..+ ++.+.++.|+.+..+....+.+ ..+.|+|+||++|. +++.+....+.
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fke-----e~~nIlVgTPGRL~--di~~~~~~~l~- 154 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKE-----EGPNILVGTPGRLL--DILQREAEKLS- 154 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHH-----hCCcEEEeCchhHH--HHHhchhhhcc-
Confidence 99999999999877666544 6789999999888777766665 57889999999997 77777666554
Q ss_pred hhccceeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccC-----CC
Q 001155 512 RELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSF-----NR 585 (1136)
Q Consensus 512 ~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~-----~r 585 (1136)
...+.++|+||||+++++| |..... .+...+| +.++=+||||.+..+.... ..|+.+++.+.-.. .+
T Consensus 155 ~rsLe~LVLDEADrLldmg--Fe~~~n---~ILs~LPKQRRTGLFSATq~~~v~dL~--raGLRNpv~V~V~~k~~~~tP 227 (567)
T KOG0345|consen 155 FRSLEILVLDEADRLLDMG--FEASVN---TILSFLPKQRRTGLFSATQTQEVEDLA--RAGLRNPVRVSVKEKSKSATP 227 (567)
T ss_pred ccccceEEecchHhHhccc--HHHHHH---HHHHhcccccccccccchhhHHHHHHH--HhhccCceeeeecccccccCc
Confidence 4568999999999999999 665554 4555666 5567789999999986633 34666665432111 11
Q ss_pred ---CchhhhH------HHHHHHHHh-----cc-cccchhhHHHHHHHHh--hcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 001155 586 ---PNLWMDC------EKVAERLQV-----GL-SYGHFFLLKEFYVVSL--ECGHKAAFYHGSIDPAQRAFVQKQWSKDE 648 (1136)
Q Consensus 586 ---~nl~~~~------e~lae~L~~-----~l-~~~~~~~~~~~~~~l~--~~g~~v~~~Hagm~~~dR~~i~~~F~~g~ 648 (1136)
.+.+..| ..+.+.|.. .+ .+.....+.-++..+. .....+..+||.|.+..|..+++.|.+..
T Consensus 228 S~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~ 307 (567)
T KOG0345|consen 228 SSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS 307 (567)
T ss_pred hhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc
Confidence 1122222 223344432 11 1111122222222222 24577899999999999999999999988
Q ss_pred ceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCC
Q 001155 649 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAE 720 (1136)
Q Consensus 649 i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~ 720 (1136)
-.||+||+++++|||+|+|++|||||+|.++..|+||+||+||.|+.|.+++|..+.+..++..|-..+.+.
T Consensus 308 ~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~ 379 (567)
T KOG0345|consen 308 NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVE 379 (567)
T ss_pred CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccc
Confidence 899999999999999999999999999999999999999999999999999999998877777665555443
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.6e-40 Score=410.66 Aligned_cols=320 Identities=19% Similarity=0.225 Sum_probs=231.0
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQD 448 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~d 448 (1136)
...+.+.+.+.|++. ||..|+++|.++|+.++.|+|+++++|||||||+||+||++.. ..++|||+||++|+.|
T Consensus 18 ~~~l~~~l~~~L~~~-g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 18 PAWAHPDVVAALEAA-GIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAAD 96 (742)
T ss_pred CCcCCHHHHHHHHHc-CCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHH
Confidence 334567888888776 9999999999999999999999999999999999999999853 4589999999999999
Q ss_pred HHHHHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc
Q 001155 449 QIMHLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC 525 (1136)
Q Consensus 449 qv~~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ 525 (1136)
|...+.++ ++++..+.|+.....+. .+. ..++|||+||++|.. ..+............+++|||||||.
T Consensus 97 ~~~~l~~l~~~~i~v~~~~Gdt~~~~r~-~i~------~~~~IivtTPd~L~~-~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 97 QLRAVRELTLRGVRPATYDGDTPTEERR-WAR------EHARYVLTNPDMLHR-GILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHhccCCeEEEEEeCCCCHHHHH-HHh------cCCCEEEEChHHHHH-hhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999886 57788888888755443 222 268999999999842 12211112223356799999999999
Q ss_pred ccc-cCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCC----------CCc------
Q 001155 526 VSQ-WGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFN----------RPN------ 587 (1136)
Q Consensus 526 ls~-wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~----------r~n------ 587 (1136)
+.+ +|..+...+++|..+...++ +.+++++|||+++... .....++.. ..++..... .+.
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~-~~~i~~~~~~~~~~~~~~~~p~~~~~~~ 246 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAP-VVAVTEDGSPRGARTVALWEPPLTELTG 246 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCC-eEEECCCCCCcCceEEEEecCCcccccc
Confidence 864 22222233444555554444 5679999999998753 333333322 222211100 010
Q ss_pred ----------hhhhHHHHHHHHHh----cccccchhhHHHHHHHHhh--------cCCeEEEEcCCCCHHHHHHHHHHHh
Q 001155 588 ----------LWMDCEKVAERLQV----GLSYGHFFLLKEFYVVSLE--------CGHKAAFYHGSIDPAQRAFVQKQWS 645 (1136)
Q Consensus 588 ----------l~~~~e~lae~L~~----~l~~~~~~~~~~~~~~l~~--------~g~~v~~~Hagm~~~dR~~i~~~F~ 645 (1136)
.......+.+.+.. +++.........++..+.. .+..+..|||+|++++|..++++|+
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred ccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH
Confidence 00111122222221 1222222233333333222 2567899999999999999999999
Q ss_pred cCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecc
Q 001155 646 KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 704 (1136)
Q Consensus 646 ~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~ 704 (1136)
+|+++|||||+++++|||+|++++||||++|.++++|+||+|||||.|..|.++++...
T Consensus 327 ~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 327 DGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred cCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 29
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-41 Score=367.71 Aligned_cols=325 Identities=22% Similarity=0.324 Sum_probs=257.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------------CCcEEEEcc
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 441 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------------~g~~LVIsP 441 (1136)
.|.--+++.+.+++. ||..|+|||++|+|.+|+|.|++.+|.||+|||++|++|.+.+ +..+||++|
T Consensus 224 AFq~~pevmenIkK~-GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~p 302 (629)
T KOG0336|consen 224 AFQCYPEVMENIKKT-GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTP 302 (629)
T ss_pred HHhhhHHHHHHHHhc-cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEec
Confidence 455567888888888 9999999999999999999999999999999999999999854 456999999
Q ss_pred ChhhHHHHHHHHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcccee
Q 001155 442 LVSLIQDQIMHLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518 (1136)
Q Consensus 442 traL~~dqv~~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lV 518 (1136)
+++|+.+.-....++ |.+..++.|+.+..++.+.++. +.+|+++||++|. +++.....++ ..+.++
T Consensus 303 treLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr------gveiiiatPgrln--dL~~~n~i~l---~siTYl 371 (629)
T KOG0336|consen 303 TRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR------GVEIIIATPGRLN--DLQMDNVINL---ASITYL 371 (629)
T ss_pred cHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc------CceEEeeCCchHh--hhhhcCeeee---eeeEEE
Confidence 999998766555543 8888899998888887776664 8999999999996 6665544444 448999
Q ss_pred eeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-------chhh-
Q 001155 519 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-------NLWM- 590 (1136)
Q Consensus 519 VIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-------nl~~- 590 (1136)
|+||||.|+++| |.|..+++ +...-|+.++++.|||.|..|+.....++.- ..+++..+.+-. ++..
T Consensus 372 VlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~sY~Ke-p~~v~vGsLdL~a~~sVkQ~i~v~ 446 (629)
T KOG0336|consen 372 VLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQSYLKE-PMIVYVGSLDLVAVKSVKQNIIVT 446 (629)
T ss_pred Eecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHHhhhC-ceEEEecccceeeeeeeeeeEEec
Confidence 999999999999 99998875 6677799999999999999998877766542 223333333221 1111
Q ss_pred ----hHHHHHHHHHh------cc-cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccc
Q 001155 591 ----DCEKVAERLQV------GL-SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFG 659 (1136)
Q Consensus 591 ----~~e~lae~L~~------~l-~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg 659 (1136)
..+.+...+.. .+ +.......+.+..-+.-.|+.+-.+||+-.+.||+..++.|+.|+++|||||+.++
T Consensus 447 ~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaS 526 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLAS 526 (629)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhh
Confidence 11111112211 11 11111222333333445688899999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 660 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 660 ~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
+|+|+||+.+|++||+|.++++|+||+||+||.|+.|.++.|+...|......||+
T Consensus 527 RGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 527 RGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred cCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777764
No 30
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=367.81 Aligned_cols=331 Identities=20% Similarity=0.240 Sum_probs=259.3
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----------CCcEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----------PGITL 437 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----------~g~~L 437 (1136)
....+..+++++....+++.. ||..++++|...|+.++.|+|+++.|-||+|||++|+||++.. +-.+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~-GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEM-GFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhc-CccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 445566788889999999888 9999999999999999999999999999999999999999843 33589
Q ss_pred EEccChhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhh
Q 001155 438 VISPLVSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAR 512 (1136)
Q Consensus 438 VIsPtraL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~ 512 (1136)
||+|||+|+-|....++.+ ++.+..+.|+.........+.. .+.|+|+||++|. |.+.+.-.. ..
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k------~~niliATPGRLl--DHlqNt~~f--~~ 228 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK------GCNILIATPGRLL--DHLQNTSGF--LF 228 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc------cccEEEeCCchHH--hHhhcCCcc--hh
Confidence 9999999999988887765 6788888888776655554443 7899999999996 555443222 22
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh--
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW-- 589 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~-- 589 (1136)
..++++|+||||+|++.| ||.++.+|..+.- ...+.++||||.+..|++...-.|.- ++..+.. .-..+...
T Consensus 229 r~~k~lvlDEADrlLd~G--F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~The~ 303 (543)
T KOG0342|consen 229 RNLKCLVLDEADRLLDIG--FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERETHER 303 (543)
T ss_pred hccceeEeecchhhhhcc--cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcchhhc
Confidence 346899999999999999 9988876533322 36789999999999998766656654 3332221 11111111
Q ss_pred -----------hhHHHHHHHHHhccc------c-cchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceE
Q 001155 590 -----------MDCEKVAERLQVGLS------Y-GHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI 651 (1136)
Q Consensus 590 -----------~~~e~lae~L~~~l~------~-~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~V 651 (1136)
...-.+...|+..+. + .....++-.+..+....+.|..+||++++..|..+...|++.+.-|
T Consensus 304 l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgI 383 (543)
T KOG0342|consen 304 LEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGI 383 (543)
T ss_pred ccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccce
Confidence 112233444443322 1 1122234444555566788999999999999999999999999999
Q ss_pred EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 652 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 652 LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
||||++++||+|+|+|++||+||+|.++++|+||+||+||.|..|++++|..+.++..++.+-
T Consensus 384 L~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 384 LVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred EEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998888775
No 31
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-39 Score=408.22 Aligned_cols=366 Identities=22% Similarity=0.295 Sum_probs=253.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHH-HHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHH
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINA-TMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQI 450 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~-il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv 450 (1136)
+++++.+.+.+++. ||..|+|+|.+|++. ++.|+|++++||||+|||++|.+|++. .++++|||+|+++|+.|++
T Consensus 6 l~lp~~~~~~l~~~-g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~ 84 (737)
T PRK02362 6 LPLPEGVIEFYEAE-GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKF 84 (737)
T ss_pred cCCCHHHHHHHHhC-CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHH
Confidence 34558888888875 999999999999998 668999999999999999999999875 3789999999999999999
Q ss_pred HHHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 451 MHLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 451 ~~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
..|.++ |+++..++|+....... .+..+|+|+|||+| +.+.+.. ......+++|||||+|++.
T Consensus 85 ~~~~~~~~~g~~v~~~tGd~~~~~~~---------l~~~~IiV~Tpek~---~~llr~~--~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 85 EEFERFEELGVRVGISTGDYDSRDEW---------LGDNDIIVATSEKV---DSLLRNG--APWLDDITCVVVDEVHLID 150 (737)
T ss_pred HHHHHhhcCCCEEEEEeCCcCccccc---------cCCCCEEEECHHHH---HHHHhcC--hhhhhhcCEEEEECccccC
Confidence 999876 88999999987643321 13679999999999 4455432 1234569999999999997
Q ss_pred ccCCCCccchhh-hhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcc------e------EEecccC---------CC
Q 001155 528 QWGHDFRPDYQG-LGILKQKFPNTPVLALTATATASVKEDVVQALGLVN------C------IIFRQSF---------NR 585 (1136)
Q Consensus 528 ~wGhdfR~~y~~-L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~------~------~i~~~s~---------~r 585 (1136)
+.+ +.+.+.. +..++...++.++++||||+++. .++.++++... + +.+.... ..
T Consensus 151 d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 151 SAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred CCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 633 4444443 34455556789999999999875 57777776321 0 0000000 00
Q ss_pred Cchh-----------------------hhHHHHHHHHHhccccc----chhhHHHHHHHH-------------hhcCCeE
Q 001155 586 PNLW-----------------------MDCEKVAERLQVGLSYG----HFFLLKEFYVVS-------------LECGHKA 625 (1136)
Q Consensus 586 ~nl~-----------------------~~~e~lae~L~~~l~~~----~~~~~~~~~~~l-------------~~~g~~v 625 (1136)
+... ..|+.++..|....... ....+..+...+ .-...++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 227 PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 0000 11222222222110000 000000000000 0012469
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE----cC-----CCCCHhHHHHHhcccCCCCCC-
Q 001155 626 AFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS-----LPKSIEGYHQECGRAGRDGQR- 695 (1136)
Q Consensus 626 ~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh----~d-----~P~Sie~YiQriGRAGR~G~~- 695 (1136)
++|||||+..+|..+++.|++|.++|||||++++||||+|++++||+ || .|.++.+|+||+|||||.|..
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999997 66 688999999999999999974
Q ss_pred -cEEEEEecccc-H-HHHHHHHh-cCcCCCCCCCCCC--CcccccchhhHHHHhHHHHHHHHHHHHhcHHHHH
Q 001155 696 -SSCVLYYSYSD-F-IRVKHMIS-QGVAEQSPFTPGH--NRFNVANSGRVLETNTENLLRMVSYCENDVDCRR 762 (1136)
Q Consensus 696 -g~~il~~~~~D-~-~~~~~li~-~~~~~es~~~~~~--~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR 762 (1136)
|.|++++...+ . ..+++++. ...|.+|.+.... .+... ..+......+.+++++|++++...|+
T Consensus 387 ~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~ll---a~I~~~~~~~~~d~~~~l~~Tf~~~~ 456 (737)
T PRK02362 387 YGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVL---STIASGFARTRDGLLEFLEATFYATQ 456 (737)
T ss_pred CceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHH---HHHHhCccCCHHHHHHHHHhChHHhh
Confidence 99999997653 3 34566664 5556666653211 00000 11112223456788899888765554
No 32
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=352.78 Aligned_cols=326 Identities=20% Similarity=0.250 Sum_probs=247.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
.+.+++.+.+.++.. |+..++|+|..|||.++.|+|+|.||.||||||.+|.||++.+ +-.++|++||++|+-
T Consensus 11 ~LGl~~Wlve~l~~l-~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~ 89 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKAL-GIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELAL 89 (442)
T ss_pred hcCccHHHHHHHHHh-cCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHH
Confidence 445668888888877 9999999999999999999999999999999999999999976 457999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh-hhhhhccceeeeec
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES-LNARELLARIVIDE 522 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~-l~~~~~l~lVVIDE 522 (1136)
|..++|..+ ++++.++.|+++.-.+...+.+ .+|++|+||+++. +.+...+.. ...+.++.++|+||
T Consensus 90 QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~------rPHvVvatPGRla--d~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 90 QIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD------RPHVVVATPGRLA--DHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred HHHHHHHHhcccccceEEEEEccHHHhhhhhhccc------CCCeEecCccccc--cccccCCccchhhhhceeeEEecc
Confidence 888888776 6889999999987777666554 8999999999997 555443221 22345699999999
Q ss_pred cccccccCCCCccchhhhhhhhccCCC-CCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC---chh-------hh
Q 001155 523 AHCVSQWGHDFRPDYQGLGILKQKFPN-TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP---NLW-------MD 591 (1136)
Q Consensus 523 AH~ls~wGhdfR~~y~~L~~l~~~~p~-~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~---nl~-------~~ 591 (1136)
|+.+.+-. |-.. |..+..-.|. .+.++||||++..+.+..........+..+..-.+-+ .++ ..
T Consensus 162 ADrvL~~~--f~d~---L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~ 236 (442)
T KOG0340|consen 162 ADRVLAGC--FPDI---LEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSID 236 (442)
T ss_pred hhhhhccc--hhhH---HhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchh
Confidence 99997743 4444 3344555564 4899999999988655322221111111111100111 011 00
Q ss_pred HH--HHHHHHHh---------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccc
Q 001155 592 CE--KVAERLQV---------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660 (1136)
Q Consensus 592 ~e--~lae~L~~---------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~ 660 (1136)
.. -+...|+. .++.+.......++..+...++.++.+|+.|++.+|...+.+|+.+.++|||||+++++
T Consensus 237 vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 10 01122221 12222223344455566678999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
|+|+|.|..|||||+|.++.+|+||+||+.|+|+.|.++.|++..|+..+..+
T Consensus 317 GLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~ai 369 (442)
T KOG0340|consen 317 GLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAI 369 (442)
T ss_pred CCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998776544
No 33
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-39 Score=369.26 Aligned_cols=319 Identities=20% Similarity=0.250 Sum_probs=249.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----------------CCcEEEEccC
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----------------PGITLVISPL 442 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----------------~g~~LVIsPt 442 (1136)
+.+...++ .-||..++|+|+.+|+.+..|+|+++||+||+|||.+|++|++.. .+.+||++||
T Consensus 83 ~~l~~ni~-~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapT 161 (482)
T KOG0335|consen 83 EALAGNIK-RSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPT 161 (482)
T ss_pred HHHhhccc-cccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCc
Confidence 34444443 349999999999999999999999999999999999999999832 2679999999
Q ss_pred hhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcccee
Q 001155 443 VSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518 (1136)
Q Consensus 443 raL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lV 518 (1136)
++|+.|.+.+..++ ++....++|+.+...+...+. .+++|+|+||++|. +++.++...+.. +++|
T Consensus 162 ReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~------~gcdIlvaTpGrL~--d~~e~g~i~l~~---~k~~ 230 (482)
T KOG0335|consen 162 RELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIK------RGCDILVATPGRLK--DLIERGKISLDN---CKFL 230 (482)
T ss_pred HHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhc------cCccEEEecCchhh--hhhhcceeehhh---CcEE
Confidence 99999999988876 678888888876665554443 38999999999997 777666555544 7899
Q ss_pred eeeccccccc-cCCCCccchhhhhhhhccC--CCCCEEEEeeccchhhHHHHHHHhcCcce--EEecccCCCCchh----
Q 001155 519 VIDEAHCVSQ-WGHDFRPDYQGLGILKQKF--PNTPVLALTATATASVKEDVVQALGLVNC--IIFRQSFNRPNLW---- 589 (1136)
Q Consensus 519 VIDEAH~ls~-wGhdfR~~y~~L~~l~~~~--p~~~iv~LSAT~~~~v~~dI~~~L~l~~~--~i~~~s~~r~nl~---- 589 (1136)
|||||+.|++ +| |-|+++.|..-.... ...+.++||||.+..+...+..++.-... .+-.-+....|+.
T Consensus 231 vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 231 VLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 9999999998 88 999998875544443 36789999999999988866655532111 1111222333333
Q ss_pred -----hhHHHHHHHHHhcc---------------cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCc
Q 001155 590 -----MDCEKVAERLQVGL---------------SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEI 649 (1136)
Q Consensus 590 -----~~~e~lae~L~~~l---------------~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i 649 (1136)
....++.+.|.... +.........+...+...++++..+||..++.+|.+.++.|++|.+
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~ 388 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA 388 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc
Confidence 22233444443221 1111223445666777889999999999999999999999999999
Q ss_pred eEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHH
Q 001155 650 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVK 711 (1136)
Q Consensus 650 ~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~ 711 (1136)
.|||||+++++|+|+|+|++||+||+|.++.+|+|||||+||.|..|.++.|++..+....+
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~ 450 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAK 450 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999965544433
No 34
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-39 Score=363.14 Aligned_cols=325 Identities=22% Similarity=0.285 Sum_probs=237.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------------CCcEEEEcc
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISP 441 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------------~g~~LVIsP 441 (1136)
.+.+.+.+...|...+++..++.+|.++||.+++|+|+||.++||+|||++|+||++.. +..+|||+|
T Consensus 140 ~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivP 219 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219 (708)
T ss_pred hcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEec
Confidence 45667899999999999999999999999999999999999999999999999999843 557999999
Q ss_pred ChhhHHHHHHHHHHcC------CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcc
Q 001155 442 LVSLIQDQIMHLLQAN------IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515 (1136)
Q Consensus 442 traL~~dqv~~L~~~g------I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l 515 (1136)
||+|+.|.++.+.++. ++..++.|.....+... ++ .++.|||+||++|. |.+...- .+ ....+
T Consensus 220 TREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR-LR------KGiNILIgTPGRLv--DHLknT~-~i-~~s~L 288 (708)
T KOG0348|consen 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR-LR------KGINILIGTPGRLV--DHLKNTK-SI-KFSRL 288 (708)
T ss_pred hHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH-Hh------cCceEEEcCchHHH--HHHhccc-hh-eeeee
Confidence 9999999998888872 34445555554444433 33 38999999999997 5554321 12 23559
Q ss_pred ceeeeeccccccccCCCCccchhhhhhhhcc-------CC----CCCEEEEeeccchhhHHHHHHHhcCcceEEec----
Q 001155 516 ARIVIDEAHCVSQWGHDFRPDYQGLGILKQK-------FP----NTPVLALTATATASVKEDVVQALGLVNCIIFR---- 580 (1136)
Q Consensus 516 ~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~-------~p----~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~---- 580 (1136)
++||+||+|.|++.| |..++..|...... .+ ..+.++||||++..|.... -+.+.+++.+.
T Consensus 289 RwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa--~~sLkDpv~I~ld~s 364 (708)
T KOG0348|consen 289 RWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLA--DLSLKDPVYISLDKS 364 (708)
T ss_pred eEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHh--hccccCceeeeccch
Confidence 999999999999999 88887765444322 22 2447899999999875522 23344444433
Q ss_pred -ccC----------------------CCC-chh---------hhHHHHHHHHHh----------cccccchhhHHHHHHH
Q 001155 581 -QSF----------------------NRP-NLW---------MDCEKVAERLQV----------GLSYGHFFLLKEFYVV 617 (1136)
Q Consensus 581 -~s~----------------------~r~-nl~---------~~~e~lae~L~~----------~l~~~~~~~~~~~~~~ 617 (1136)
... .-| ++. ...-.++..|.. .+++.....+.--|..
T Consensus 365 ~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~l 444 (708)
T KOG0348|consen 365 HSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSL 444 (708)
T ss_pred hhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHH
Confidence 110 001 000 011112222221 1111111111111211
Q ss_pred Hh----------------------hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC
Q 001155 618 SL----------------------ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 675 (1136)
Q Consensus 618 l~----------------------~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~ 675 (1136)
+. ..+.++.-+||+|.+++|..+++.|....-.||+||+++++|+|+|+|+.||+||+
T Consensus 445 f~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~ 524 (708)
T KOG0348|consen 445 FSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDP 524 (708)
T ss_pred HHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCC
Confidence 11 11346778899999999999999999998899999999999999999999999999
Q ss_pred CCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 676 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 676 P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
|.+.++|+||+||+.|.|..|.+++|..+.+.+++..+
T Consensus 525 P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 99999999999999999999999999999999855544
No 35
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=369.96 Aligned_cols=335 Identities=20% Similarity=0.277 Sum_probs=265.6
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC-CcEEEEccCCChHHHHHHhhhhhC----------
Q 001155 364 GSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTYQLPALIC---------- 432 (1136)
Q Consensus 364 ~~~~~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g-~dvLV~APTGsGKTl~y~LpaL~~---------- 432 (1136)
......|..+ +++..++.+|.+. ||..|++||..+++++..| .|++..|.|||||||+|-+|++..
T Consensus 177 ~~DvsAW~~l--~lp~~iL~aL~~~-gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 177 KVDVSAWKNL--FLPMEILRALSNL-GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred ccChHHHhcC--CCCHHHHHHHHhc-CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 3344789855 6679999999888 9999999999999999998 799999999999999999999962
Q ss_pred ---------CCcEEEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhch
Q 001155 433 ---------PGITLVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499 (1136)
Q Consensus 433 ---------~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~ 499 (1136)
...+||++|||+|+.|...++... +|.+..++|++....|+.++.. .++|+|+||++|+
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~------~p~IVVATPGRlw-- 325 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ------RPDIVVATPGRLW-- 325 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc------CCCEEEecchHHH--
Confidence 234999999999999988888765 8999999999999999888875 8899999999997
Q ss_pred HHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhh--ccCCCCCEEEEeeccchhhHH------------
Q 001155 500 DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK--QKFPNTPVLALTATATASVKE------------ 565 (1136)
Q Consensus 500 d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~--~~~p~~~iv~LSAT~~~~v~~------------ 565 (1136)
.++...-..+..+..++++||||+|+|.+-|| |...-..|..+- +..+..+.+.||||++-....
T Consensus 326 eli~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~ 404 (731)
T KOG0347|consen 326 ELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKE 404 (731)
T ss_pred HHHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchh
Confidence 45544444456667799999999999999998 543333233222 233467899999998754322
Q ss_pred --------HHHHHhcCcce-EEecccCCCCchhhhHHHHHHHHH---------------------hcccccchhhHHHHH
Q 001155 566 --------DVVQALGLVNC-IIFRQSFNRPNLWMDCEKVAERLQ---------------------VGLSYGHFFLLKEFY 615 (1136)
Q Consensus 566 --------dI~~~L~l~~~-~i~~~s~~r~nl~~~~e~lae~L~---------------------~~l~~~~~~~~~~~~ 615 (1136)
.+.+.+++... .++... +. ...+..+.+.+- .+++++.+..++.++
T Consensus 405 ~~~~~kiq~Lmk~ig~~~kpkiiD~t--~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt 480 (731)
T KOG0347|consen 405 DELNAKIQHLMKKIGFRGKPKIIDLT--PQ--SATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLT 480 (731)
T ss_pred hhhhHHHHHHHHHhCccCCCeeEecC--cc--hhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHH
Confidence 23333444332 222111 00 011122222211 123344556778899
Q ss_pred HHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCC
Q 001155 616 VVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 695 (1136)
Q Consensus 616 ~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~ 695 (1136)
.++...++....+|+.|.+.+|-..+++|.+..-.|||||+++++|+|+|.|.+||||.+|++.+-|+||.||+.|++..
T Consensus 481 ~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 481 VLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred HHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeccccHHHHHHHH
Q 001155 696 SSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 696 g~~il~~~~~D~~~~~~li 714 (1136)
|..++|+.+.++..|+++-
T Consensus 561 Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 561 GVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred CeEEEEeChHHhHHHHHHH
Confidence 9999999999988887764
No 36
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-38 Score=336.49 Aligned_cols=324 Identities=19% Similarity=0.247 Sum_probs=253.0
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
+..+.++++...-.+ ||..|..+|+.||+.++.|+|+++.|..|+|||.+|-+.++.. .-.+||++|||+|+.
T Consensus 31 ~Mgl~edlLrgiY~y-GfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~ 109 (400)
T KOG0328|consen 31 DMGLKEDLLRGIYAY-GFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAV 109 (400)
T ss_pred hcCchHHHHHHHHHh-ccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHH
Confidence 445568888887776 9999999999999999999999999999999999998777743 457999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
|.-..+..+ ++.+....|+.+..+....+.. +.+++.+||+++. +++.+.... ...+.++|+|||
T Consensus 110 Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~------G~hvVsGtPGrv~--dmikr~~L~---tr~vkmlVLDEa 178 (400)
T KOG0328|consen 110 QIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY------GQHVVSGTPGRVL--DMIKRRSLR---TRAVKMLVLDEA 178 (400)
T ss_pred HHHHHHHHhcccccceEEEEecCCccchhhhhhcc------cceEeeCCCchHH--HHHHhcccc---ccceeEEEeccH
Confidence 777777665 6888888888887665554442 7899999999997 666554332 345999999999
Q ss_pred ccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEec-ccC------------CCCchh-
Q 001155 524 HCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFR-QSF------------NRPNLW- 589 (1136)
Q Consensus 524 H~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~-~s~------------~r~nl~- 589 (1136)
|.+++-| |....- ..++...|+.+++++|||++..+.+....++.-.-.+... ... .+.+..
T Consensus 179 DemL~kg--fk~Qiy--diyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 179 DEMLNKG--FKEQIY--DIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred HHHHHhh--HHHHHH--HHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH
Confidence 9998877 554332 2344555699999999999999888776654322222211 111 111100
Q ss_pred hhHHHHHHHHH---hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC
Q 001155 590 MDCEKVAERLQ---VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 666 (1136)
Q Consensus 590 ~~~e~lae~L~---~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~ 666 (1136)
.....+.+.|. ..++++....+..+...+.+..+.+...||+|++++|+.+...|+.|+.+||++|+++++|||+|.
T Consensus 255 dtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~q 334 (400)
T KOG0328|consen 255 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQ 334 (400)
T ss_pred hHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcce
Confidence 11112233332 123444445566677777888999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 667 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 667 V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
|..||+||+|.+.+.|+||+||.||.|++|.++-|....|+..++.+
T Consensus 335 VslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdi 381 (400)
T KOG0328|consen 335 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDI 381 (400)
T ss_pred eEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887765
No 37
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-38 Score=356.64 Aligned_cols=327 Identities=23% Similarity=0.319 Sum_probs=253.0
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----------CCcEEEEccC
Q 001155 373 WDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPL 442 (1136)
Q Consensus 373 ~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----------~g~~LVIsPt 442 (1136)
.+||++......|+.. +|..++.+|+.+|+.+|.|+|+|..|.||+||||+|++|+|.. +--+|||+||
T Consensus 72 ~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPT 150 (758)
T KOG0343|consen 72 ADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPT 150 (758)
T ss_pred HhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecch
Confidence 4789999999999998 9999999999999999999999999999999999999999853 2348999999
Q ss_pred hhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhh--hhhhccc
Q 001155 443 VSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL--NARELLA 516 (1136)
Q Consensus 443 raL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l--~~~~~l~ 516 (1136)
|+|+.|.+..|.+. .+.++++.|+.........+ ..+.||||||++|++ ++..- .....+.
T Consensus 151 RELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-------~~mNILVCTPGRLLQ------Hmde~~~f~t~~lQ 217 (758)
T KOG0343|consen 151 RELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-------SQMNILVCTPGRLLQ------HMDENPNFSTSNLQ 217 (758)
T ss_pred HHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-------hcCCeEEechHHHHH------HhhhcCCCCCCcce
Confidence 99999999999886 57889999998765544433 378899999999963 22211 1234589
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEeccc----CCCC-chh-
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQS----FNRP-NLW- 589 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s----~~r~-nl~- 589 (1136)
++|+||||+++++| |+.. |..+...+| ..+.++||||.+..+..... |.+.++.++... ..-| ++.
T Consensus 218 mLvLDEADR~LDMG--Fk~t---L~~Ii~~lP~~RQTLLFSATqt~svkdLaR--LsL~dP~~vsvhe~a~~atP~~L~Q 290 (758)
T KOG0343|consen 218 MLVLDEADRMLDMG--FKKT---LNAIIENLPKKRQTLLFSATQTKSVKDLAR--LSLKDPVYVSVHENAVAATPSNLQQ 290 (758)
T ss_pred EEEeccHHHHHHHh--HHHH---HHHHHHhCChhheeeeeecccchhHHHHHH--hhcCCCcEEEEeccccccChhhhhh
Confidence 99999999999999 6654 445555555 67899999999999865433 444554433211 1112 221
Q ss_pred --------hhHHHHHHHHHhcccc------cchhhHHHHHHHH--hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 001155 590 --------MDCEKVAERLQVGLSY------GHFFLLKEFYVVS--LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIIC 653 (1136)
Q Consensus 590 --------~~~e~lae~L~~~l~~------~~~~~~~~~~~~l--~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLV 653 (1136)
.....+...+...+.. .....++-+|..+ +..|+.+..+||+|++..|.++...|....--||+
T Consensus 291 ~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF 370 (758)
T KOG0343|consen 291 SYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLF 370 (758)
T ss_pred eEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEE
Confidence 2233344444433222 2222334444443 25689999999999999999999999999999999
Q ss_pred eeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh-cCcCC
Q 001155 654 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS-QGVAE 720 (1136)
Q Consensus 654 AT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~-~~~~~ 720 (1136)
||+++++|+|+|+|++||++|.|.++.+|+||+||+.|.+..|.|+++..+++...+...++ +.+++
T Consensus 371 ~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~I~i 438 (758)
T KOG0343|consen 371 CTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKKIPI 438 (758)
T ss_pred eehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999999555554444 44544
No 38
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-39 Score=346.38 Aligned_cols=330 Identities=20% Similarity=0.271 Sum_probs=252.4
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|. +|-+-.+++.-+.+. ||..|.|+|.+.||.++.|+|+|+.|..|+|||.+|.+|.|.. .-.++|++|
T Consensus 85 ~efE--d~~Lkr~LLmgIfe~-G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 85 NEFE--DYCLKRELLMGIFEK-GFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVP 161 (459)
T ss_pred ccHH--HhhhhHHHHHHHHHh-ccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEee
Confidence 3454 455556666666666 9999999999999999999999999999999999999999965 236899999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+-|.-+....+ |+.+.+.+|+.+.......+ ....+++|+||+++. |+..+....+. ...+
T Consensus 162 trelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl------~~~VH~~vgTPGRIl--DL~~KgVa~ls---~c~~ 230 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRL------NQTVHLVVGTPGRIL--DLAKKGVADLS---DCVI 230 (459)
T ss_pred cchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeee------cCceEEEEcCChhHH--HHHhcccccch---hceE
Confidence 999987654444333 88889999998765433222 248999999999997 76665554444 4789
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC---chh----
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP---NLW---- 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~---nl~---- 589 (1136)
+|+||||.++. .+|.+.+..| ...+| ..+++++|||.|-.|...+.++|.-+-.+-.-...... ..+
T Consensus 231 lV~DEADKlLs--~~F~~~~e~l---i~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~ 305 (459)
T KOG0326|consen 231 LVMDEADKLLS--VDFQPIVEKL---ISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVE 305 (459)
T ss_pred EEechhhhhhc--hhhhhHHHHH---HHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeec
Confidence 99999999976 4577776654 44455 67899999999999988888776543222111100000 000
Q ss_pred ----hhH-HHHHHHHH---hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccc
Q 001155 590 ----MDC-EKVAERLQ---VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661 (1136)
Q Consensus 590 ----~~~-e~lae~L~---~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~G 661 (1136)
..| ..+..+|+ ..++++....+.-+...+-+.|+.+.++|+.|.+++|.+++..|++|.++.||||+.|.+|
T Consensus 306 e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRG 385 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRG 385 (459)
T ss_pred hhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcc
Confidence 112 12233332 1233344444455555566889999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
||+++|.+||+||+|++.+.|+||+||+||.|..|.+|.+.+..|...+.++-.+
T Consensus 386 IDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~e 440 (459)
T KOG0326|consen 386 IDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQE 440 (459)
T ss_pred cccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998777665433
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.8e-37 Score=385.20 Aligned_cols=362 Identities=19% Similarity=0.271 Sum_probs=241.1
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHH-HHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHH
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINA-TMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQ 449 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~-il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dq 449 (1136)
+++++.+.+.+++. ||..|+|+|.++++. ++.|+|++++||||+|||++|.+|++. .++++|||+|+++|+.|+
T Consensus 6 l~l~~~~~~~l~~~-g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 6 LRVDERIKRVLKER-GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEK 84 (720)
T ss_pred cCCCHHHHHHHHhC-CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH
Confidence 44668888888885 999999999999986 678999999999999999999999874 367999999999999999
Q ss_pred HHHHHH---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 450 IMHLLQ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 450 v~~L~~---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
+..|.. .|+++..++|+....... + +.++|+|+|||+| +.+.+.. ......+++|||||+|++
T Consensus 85 ~~~~~~~~~~g~~v~~~~Gd~~~~~~~--~-------~~~~IiV~Tpe~~---~~ll~~~--~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 85 YREFKDWEKLGLRVAMTTGDYDSTDEW--L-------GKYDIIIATAEKF---DSLLRHG--SSWIKDVKLVVADEIHLI 150 (720)
T ss_pred HHHHHHHhhcCCEEEEEeCCCCCchhh--h-------ccCCEEEEcHHHH---HHHHhCC--chhhhcCCEEEEcCcCcc
Confidence 988875 488999999987654321 1 3689999999999 4444321 122456999999999999
Q ss_pred cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce-----------EEecccCCC---Cch----
Q 001155 527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNC-----------IIFRQSFNR---PNL---- 588 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~-----------~i~~~s~~r---~nl---- 588 (1136)
.+++ +.+.+..+ +.......++++||||+++. .++..+++.... .++...+.. ...
T Consensus 151 ~~~~--rg~~le~i--l~~l~~~~qiI~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 151 GSYD--RGATLEMI--LTHMLGRAQILGLSATVGNA--EELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CCcc--chHHHHHH--HHhcCcCCcEEEEEccCCCH--HHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcch
Confidence 8765 33333322 22233568899999999875 677788764210 011111000 000
Q ss_pred hhhHHHHHHHHHh---cccccc-hhhHH-----------------------HHHHH----------HhhcCCeEEEEcCC
Q 001155 589 WMDCEKVAERLQV---GLSYGH-FFLLK-----------------------EFYVV----------SLECGHKAAFYHGS 631 (1136)
Q Consensus 589 ~~~~e~lae~L~~---~l~~~~-~~~~~-----------------------~~~~~----------l~~~g~~v~~~Hag 631 (1136)
......+.+.+.. .+.+.. ..... .+... ......++++||||
T Consensus 225 ~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 225 NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 0000111111111 111111 00000 00000 00123469999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE-------cCCCC-CHhHHHHHhcccCCCC--CCcEEEEE
Q 001155 632 IDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH-------HSLPK-SIEGYHQECGRAGRDG--QRSSCVLY 701 (1136)
Q Consensus 632 m~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh-------~d~P~-Sie~YiQriGRAGR~G--~~g~~il~ 701 (1136)
|++++|..+++.|++|.++|||||++++||||+|++++||+ ++.|. ++.+|+||+|||||.| ..|.++++
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999994 45443 6789999999999986 47999999
Q ss_pred ecccc-HHHHHHHHhcCcCC--CCCCCCC--CCcccccchhhHHHHhHHHHHHHHHHHHhcHHHH
Q 001155 702 YSYSD-FIRVKHMISQGVAE--QSPFTPG--HNRFNVANSGRVLETNTENLLRMVSYCENDVDCR 761 (1136)
Q Consensus 702 ~~~~D-~~~~~~li~~~~~~--es~~~~~--~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CR 761 (1136)
+...+ ...+.+++.. .|+ .+.+... ..... ...+......+.+++++|++++..++
T Consensus 385 ~~~~~~~~~~~~~~~~-~pe~l~s~l~~es~l~~~l---l~~i~~~~~~~~~~~~~~l~~Tf~~~ 445 (720)
T PRK00254 385 ATTEEPSKLMERYIFG-KPEKLFSMLSNESAFRSQV---LALITNFGVSNFKELVNFLERTFYAH 445 (720)
T ss_pred ecCcchHHHHHHHHhC-CchhhhccCCchHHHHHHH---HHHHHhCCCCCHHHHHHHHHhCHHHH
Confidence 97665 3345555532 221 1111100 00000 01122223456778899998876664
No 40
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=345.01 Aligned_cols=328 Identities=20% Similarity=0.270 Sum_probs=269.1
Q ss_pred CCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----------CCcEEEEc
Q 001155 372 SWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVIS 440 (1136)
Q Consensus 372 ~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----------~g~~LVIs 440 (1136)
+..|.+.+.|..+.++. .|.+++|+|.++++.+++|+|++.+|-||||||.+|+.|++.+ ++..||++
T Consensus 225 feh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 225 FEHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 34566778898888887 8999999999999999999999999999999999999999854 56899999
Q ss_pred cChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 441 PLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 441 PtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
||++|+.|.....+++ ||++++++|+.+..+|...+.. ++.||||||++|. +++.-+..++ .++.
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~------g~EivVaTPgRli--d~VkmKatn~---~rvS 372 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE------GAEIVVATPGRLI--DMVKMKATNL---SRVS 372 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc------CCeEEEechHHHH--HHHHhhcccc---eeee
Confidence 9999999888877765 8999999999999888877763 8999999999997 6665554444 4599
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCch--------
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNL-------- 588 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl-------- 588 (1136)
++|||||++|.++| |.+.++-|.. ..-|+.+.++||||....+.......|.-.--++ ..+....|-
T Consensus 373 ~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lard~L~dpVrvV-qg~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 373 YLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLARDILSDPVRVV-QGEVGEANEDITQTVSV 447 (731)
T ss_pred EEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHHHHhcCCeeEE-Eeehhccccchhheeee
Confidence 99999999999999 8888876543 3347899999999999999887777775332222 112221111
Q ss_pred ----hhhHHHHHHHHHhcccccch-------hhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecc
Q 001155 589 ----WMDCEKVAERLQVGLSYGHF-------FLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVA 657 (1136)
Q Consensus 589 ----~~~~e~lae~L~~~l~~~~~-------~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~a 657 (1136)
.....+++..|......+.+ ...+++...+...|+.+..+||+|.+.+|.+++..|+.+...|||||++
T Consensus 448 ~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDv 527 (731)
T KOG0339|consen 448 CPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDV 527 (731)
T ss_pred ccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeH
Confidence 13334445555443332221 2345666777788999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 658 FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 658 lg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
+++|+|+|+++.||+||+-++++.|.||+||+||.|..|.++.+.+..|....-+|++.
T Consensus 528 aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 528 AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999877777653
No 41
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-36 Score=374.65 Aligned_cols=363 Identities=20% Similarity=0.247 Sum_probs=241.9
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHH
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIM 451 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~ 451 (1136)
+++.+.+.+.+.+. ||. |+++|.++++.+.+|+|++++||||+|||++|.++++. .++++|||+|+++|+.|+++
T Consensus 6 ~~l~~~~~~~~~~~-~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~ 83 (674)
T PRK01172 6 LGYDDEFLNLFTGN-DFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYE 83 (674)
T ss_pred cCCCHHHHHHHhhC-CCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHH
Confidence 34557777777665 776 99999999999999999999999999999999988864 37889999999999999999
Q ss_pred HHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 452 HLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 452 ~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
.|.++ |+++..++|+....... + ...+|+|+|||++ +.+.+... .....+++|||||||++.+
T Consensus 84 ~~~~l~~~g~~v~~~~G~~~~~~~~--~-------~~~dIiv~Tpek~---~~l~~~~~--~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 84 ELSRLRSLGMRVKISIGDYDDPPDF--I-------KRYDVVILTSEKA---DSLIHHDP--YIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHhhcCCeEEEEeCCCCCChhh--h-------ccCCEEEECHHHH---HHHHhCCh--hHHhhcCEEEEecchhccC
Confidence 88753 78888888886543321 1 2679999999999 44544322 2345699999999999976
Q ss_pred cCCCCccchhhh-hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce------------EEecc-----cCCCCc--h
Q 001155 529 WGHDFRPDYQGL-GILKQKFPNTPVLALTATATASVKEDVVQALGLVNC------------IIFRQ-----SFNRPN--L 588 (1136)
Q Consensus 529 wGhdfR~~y~~L-~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~------------~i~~~-----s~~r~n--l 588 (1136)
.+ +.+.+..+ ..++...++.++++||||+++. .++.++++.... +.+.. ...+.. +
T Consensus 150 ~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 150 ED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccH
Confidence 43 33333332 2233344678999999999875 567777753210 00000 000000 0
Q ss_pred h--------------------hhHHHHHHHHHhcccccch--------hhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHH
Q 001155 589 W--------------------MDCEKVAERLQVGLSYGHF--------FLLKEFYVVSLECGHKAAFYHGSIDPAQRAFV 640 (1136)
Q Consensus 589 ~--------------------~~~e~lae~L~~~l~~~~~--------~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i 640 (1136)
. ..++.++..|......... .........+. ..++++|||||+.++|..+
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l--~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEML--PHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHH--hcCEEEecCCCCHHHHHHH
Confidence 0 1122222222111000000 00000000111 2358999999999999999
Q ss_pred HHHHhcCCceEEEeeccccccccCCCccEEEE--------cCCCCCHhHHHHHhcccCCCCC--CcEEEEEeccc-cHHH
Q 001155 641 QKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSIEGYHQECGRAGRDGQ--RSSCVLYYSYS-DFIR 709 (1136)
Q Consensus 641 ~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh--------~d~P~Sie~YiQriGRAGR~G~--~g~~il~~~~~-D~~~ 709 (1136)
++.|++|.++|||||++++||||+|+.++||. +..|.++.+|.||+|||||.|. .|.+++++... ++..
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~ 383 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHH
Confidence 99999999999999999999999999877662 1135689999999999999995 67788876544 4677
Q ss_pred HHHHH-hcCcCCCCCCCCCCCc-ccccchhhHHHHhHHHHHHHHHHHHhcHHHH
Q 001155 710 VKHMI-SQGVAEQSPFTPGHNR-FNVANSGRVLETNTENLLRMVSYCENDVDCR 761 (1136)
Q Consensus 710 ~~~li-~~~~~~es~~~~~~~~-~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CR 761 (1136)
+++++ ....|.+|.+...... .+. ...+......+.+++++|++++...+
T Consensus 384 ~~~~l~~~~~pi~S~l~~~~~~~~~~--l~~i~~g~~~~~~d~~~~l~~tf~~~ 435 (674)
T PRK01172 384 AKKYLSGEPEPVISYMGSQRKVRFNT--LAAISMGLASSMEDLILFYNETLMAI 435 (674)
T ss_pred HHHHHcCCCCceeecCCCcccHHHHH--HHHHHhcccCCHHHHHHHHHhhhhHh
Confidence 88877 5666777665432211 000 01111122344578888887765544
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.6e-36 Score=381.46 Aligned_cols=309 Identities=23% Similarity=0.297 Sum_probs=216.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------------CCcEEEEccChhhH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------------PGITLVISPLVSLI 446 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------------~g~~LVIsPtraL~ 446 (1136)
+.+.+.+++ +|..|+|+|.++++.+++|+|++++||||+|||++|++|++.. +..+|||+|+++|+
T Consensus 20 ~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa 97 (876)
T PRK13767 20 PYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALN 97 (876)
T ss_pred HHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHH
Confidence 555555555 6778999999999999999999999999999999999999732 23599999999999
Q ss_pred HHHHHHHHH---------------c-CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhh
Q 001155 447 QDQIMHLLQ---------------A-NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN 510 (1136)
Q Consensus 447 ~dqv~~L~~---------------~-gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~ 510 (1136)
.|+...+.. . ++++..++|+.....+...+.. .++|+|+|||+|. .+........
T Consensus 98 ~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~------~p~IlVtTPE~L~---~ll~~~~~~~ 168 (876)
T PRK13767 98 NDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK------PPHILITTPESLA---ILLNSPKFRE 168 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC------CCCEEEecHHHHH---HHhcChhHHH
Confidence 998876542 1 5678889999887776655442 7899999999994 3332222222
Q ss_pred hhhccceeeeecccccccc--CCCCccchhhhhhhhccC-CCCCEEEEeeccchhhHHHHHHHhcCc-------ceEEec
Q 001155 511 ARELLARIVIDEAHCVSQW--GHDFRPDYQGLGILKQKF-PNTPVLALTATATASVKEDVVQALGLV-------NCIIFR 580 (1136)
Q Consensus 511 ~~~~l~lVVIDEAH~ls~w--GhdfR~~y~~L~~l~~~~-p~~~iv~LSAT~~~~v~~dI~~~L~l~-------~~~i~~ 580 (1136)
....+++|||||||.+.+. |..+...+.+ +.... +..++++||||+.+. .++..++... ...++.
T Consensus 169 ~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r---L~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv~ 243 (876)
T PRK13767 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLER---LEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIVD 243 (876)
T ss_pred HHhcCCEEEEechhhhccCccHHHHHHHHHH---HHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEEc
Confidence 3456999999999999752 2222222233 33333 467899999999874 4566666431 112222
Q ss_pred ccCCCC----------chh-----hhHHHHHHHHHh-------ccccc-chhhHHHHHHHHhh------cCCeEEEEcCC
Q 001155 581 QSFNRP----------NLW-----MDCEKVAERLQV-------GLSYG-HFFLLKEFYVVSLE------CGHKAAFYHGS 631 (1136)
Q Consensus 581 ~s~~r~----------nl~-----~~~e~lae~L~~-------~l~~~-~~~~~~~~~~~l~~------~g~~v~~~Hag 631 (1136)
..+.++ .+. .....+...+.. .+.+. .......++..+.. .+..+.+|||+
T Consensus 244 ~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ 323 (876)
T PRK13767 244 ARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS 323 (876)
T ss_pred cCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCC
Confidence 211111 000 000111222221 22222 22233333333333 24679999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCC-CCCcEEEEEec
Q 001155 632 IDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD-GQRSSCVLYYS 703 (1136)
Q Consensus 632 m~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~-G~~g~~il~~~ 703 (1136)
|++++|..+++.|++|+++|||||+++++|||+|++++||+++.|.++..|+||+|||||. |..+.++++..
T Consensus 324 ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 324 LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999986 44455555543
No 43
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=364.18 Aligned_cols=321 Identities=23% Similarity=0.311 Sum_probs=227.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHH-HHCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINA-TMSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~-il~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L 453 (1136)
+.+.+.++. .|+..+.+.|+.++.. ++.++|+|||+|||+|||++++|.++.. ++++|||+|+++|+.+.+.+|
T Consensus 18 ~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~ 96 (766)
T COG1204 18 DRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEF 96 (766)
T ss_pred HHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHh
Confidence 334443333 3776666666666555 4567999999999999999999999854 479999999999999999999
Q ss_pred H---HcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccC
Q 001155 454 L---QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530 (1136)
Q Consensus 454 ~---~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wG 530 (1136)
. .+|+++...+|+........ ..++|||+|||+| |.++|+... ....+++|||||+|.+.+
T Consensus 97 ~~~~~~GirV~~~TgD~~~~~~~l---------~~~~ViVtT~EK~---Dsl~R~~~~--~~~~V~lvViDEiH~l~d-- 160 (766)
T COG1204 97 SRLEELGIRVGISTGDYDLDDERL---------ARYDVIVTTPEKL---DSLTRKRPS--WIEEVDLVVIDEIHLLGD-- 160 (766)
T ss_pred hhHHhcCCEEEEecCCcccchhhh---------ccCCEEEEchHHh---hHhhhcCcc--hhhcccEEEEeeeeecCC--
Confidence 8 56999999999988655322 4899999999999 888887665 456799999999999953
Q ss_pred CCCccchhh--hhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceE--EecccCCCCch------------------
Q 001155 531 HDFRPDYQG--LGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCI--IFRQSFNRPNL------------------ 588 (1136)
Q Consensus 531 hdfR~~y~~--L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~--i~~~s~~r~nl------------------ 588 (1136)
+.|..... +..++...+.+++++||||+++. .++..+|+..... ....+..++..
T Consensus 161 -~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~ 237 (766)
T COG1204 161 -RTRGPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLL 237 (766)
T ss_pred -cccCceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccccccc
Confidence 22655533 33444455568999999999998 7889998755321 00011111111
Q ss_pred h-------------------------hhHHHHHHHHHh----cccccchhh--------H--------HHHHHHHhhcCC
Q 001155 589 W-------------------------MDCEKVAERLQV----GLSYGHFFL--------L--------KEFYVVSLECGH 623 (1136)
Q Consensus 589 ~-------------------------~~~e~lae~L~~----~l~~~~~~~--------~--------~~~~~~l~~~g~ 623 (1136)
. ..+...+.++.. .+....... . .+....+.. .
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~--~ 315 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVL--R 315 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHH--h
Confidence 0 122233333331 000000000 0 011112222 3
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEE----EcC-----CCCCHhHHHHHhcccCCCCC
Q 001155 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----HHS-----LPKSIEGYHQECGRAGRDGQ 694 (1136)
Q Consensus 624 ~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VI----h~d-----~P~Sie~YiQriGRAGR~G~ 694 (1136)
++++|||||++++|..+++.|+.|.++|||||.+|+||||+|+-++|| -|+ .+-++-+|+||+|||||.|.
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 589999999999999999999999999999999999999999999999 566 45578999999999999997
Q ss_pred --CcEEEEEe-ccccHHHHHHHHhcCcCCC
Q 001155 695 --RSSCVLYY-SYSDFIRVKHMISQGVAEQ 721 (1136)
Q Consensus 695 --~g~~il~~-~~~D~~~~~~li~~~~~~e 721 (1136)
.|.++++. +..+...+.....++.+++
T Consensus 396 d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~ 425 (766)
T COG1204 396 DDYGEAIILATSHDELEYLAELYIQSEPEP 425 (766)
T ss_pred CCCCcEEEEecCccchhHHHHHhhccCcch
Confidence 56777776 5566666655555555543
No 44
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.5e-34 Score=379.10 Aligned_cols=319 Identities=18% Similarity=0.234 Sum_probs=245.0
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.++.+.+++++|| .|+++|.++++.++.|+|++++||||+|||++++++++.. +.++|||+||++|+.|++..+..
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 5677788888999 6999999999999999999999999999999888777654 55899999999999999999987
Q ss_pred c------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccccc
Q 001155 456 A------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQW 529 (1136)
Q Consensus 456 ~------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~w 529 (1136)
+ ++.+..++|+.+..++...+..+.. +.++|||+||++|. +.+.. +.. ..+++|||||||+|++|
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~dILV~TPgrL~--~~~~~----l~~-~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIEN--GDFDILVTTAQFLA--RNFPE----MKH-LKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECCchhH--HhHHH----Hhh-CCCCEEEEECceecccc
Confidence 4 4667888999998887766665553 57999999999885 33322 111 45899999999999999
Q ss_pred CC---------CCccchhh----h-------------------hhhhccCCCCC--EEEEeeccchhhHHHHHHHhcCcc
Q 001155 530 GH---------DFRPDYQG----L-------------------GILKQKFPNTP--VLALTATATASVKEDVVQALGLVN 575 (1136)
Q Consensus 530 Gh---------dfR~~y~~----L-------------------~~l~~~~p~~~--iv~LSAT~~~~v~~dI~~~L~l~~ 575 (1136)
|| +|++++.. + ......+|..+ .+.+|||+++. .++...+ ..
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 98 89998864 1 11112334443 45678888764 3344433 33
Q ss_pred eEEecccCCCCchhh--------h---HHHHHHHHHhc----ccccchh----hHHHHHHHHhhcCCeEEEEcCCCCHHH
Q 001155 576 CIIFRQSFNRPNLWM--------D---CEKVAERLQVG----LSYGHFF----LLKEFYVVSLECGHKAAFYHGSIDPAQ 636 (1136)
Q Consensus 576 ~~i~~~s~~r~nl~~--------~---~e~lae~L~~~----l~~~~~~----~~~~~~~~l~~~g~~v~~~Hagm~~~d 636 (1136)
+..|..++.++++.. . .+.+.+.+... +.+.... ....+...+...|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~----- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK----- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----
Confidence 444555555544330 1 12344444332 2222211 1356677788899999999995
Q ss_pred HHHHHHHHhcCCceEEEeec----cccccccCCC-ccEEEEcCCCC---CHhHHHHHh-------------cccCCCCCC
Q 001155 637 RAFVQKQWSKDEINIICATV----AFGMGINKPD-VRFVIHHSLPK---SIEGYHQEC-------------GRAGRDGQR 695 (1136)
Q Consensus 637 R~~i~~~F~~g~i~VLVAT~----alg~GIDlP~-V~~VIh~d~P~---Sie~YiQri-------------GRAGR~G~~ 695 (1136)
|..+++.|++|+++|||||+ +++||||+|+ |++|||||+|+ |++.|+|.. |||||+|.+
T Consensus 367 R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 88999999999999999995 7889999999 99999999999 999998887 999999999
Q ss_pred cEEEEEeccccHHHHHHHHhc
Q 001155 696 SSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 696 g~~il~~~~~D~~~~~~li~~ 716 (1136)
+.+++.+...++..++.++.+
T Consensus 447 ~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 447 IEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred chhHHHhHHHHHHHHHHHhcc
Confidence 999998999999998888875
No 45
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-35 Score=323.54 Aligned_cols=318 Identities=20% Similarity=0.287 Sum_probs=242.3
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------------CCcEEEEc
Q 001155 373 WDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------------PGITLVIS 440 (1136)
Q Consensus 373 ~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------------~g~~LVIs 440 (1136)
.+|.+.+.+.+++.+. ||..++-+|+.|||.++.|+|+++.|.||||||++|+||++.. +..++|++
T Consensus 22 e~~gLD~RllkAi~~l-G~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv 100 (569)
T KOG0346|consen 22 EEFGLDSRLLKAITKL-GWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV 100 (569)
T ss_pred HHhCCCHHHHHHHHHh-CcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe
Confidence 3678889999999888 9999999999999999999999999999999999999999853 45699999
Q ss_pred cChhhHHHHHHHHHHc------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhc
Q 001155 441 PLVSLIQDQIMHLLQA------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAREL 514 (1136)
Q Consensus 441 PtraL~~dqv~~L~~~------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~ 514 (1136)
||++|++|.+..+.++ .+++.-+.++++.......+. +.++|+|+||.++. ..+.... +.....
T Consensus 101 PTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~------d~pdIvV~TP~~ll--~~~~~~~--~~~~~~ 170 (569)
T KOG0346|consen 101 PTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALM------DLPDIVVATPAKLL--RHLAAGV--LEYLDS 170 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHc------cCCCeEEeChHHHH--HHHhhcc--chhhhh
Confidence 9999999877666554 577777777777666554443 48999999999996 3333322 133455
Q ss_pred cceeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEec--ccCCC--Cchh
Q 001155 515 LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFR--QSFNR--PNLW 589 (1136)
Q Consensus 515 l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~--~s~~r--~nl~ 589 (1136)
+.++|+||||.+..+| |..++..| ...+| ..+.+++|||++..+.. .+.|-+.++++.. .+... .++.
T Consensus 171 l~~LVvDEADLllsfG--Yeedlk~l---~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el~~~dqL~ 243 (569)
T KOG0346|consen 171 LSFLVVDEADLLLSFG--YEEDLKKL---RSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGELPNPDQLT 243 (569)
T ss_pred eeeEEechhhhhhhcc--cHHHHHHH---HHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccccCCCcccce
Confidence 8999999999999988 77776654 34444 56789999999998754 3334455555432 22111 1111
Q ss_pred ---hhHHH------HHHHHHh-------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 001155 590 ---MDCEK------VAERLQV-------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIIC 653 (1136)
Q Consensus 590 ---~~~e~------lae~L~~-------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLV 653 (1136)
..|.+ +...|+. +++.+.+.....+...+...|++..++.+.|+...|-.|+++|..|-++|||
T Consensus 244 Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivI 323 (569)
T KOG0346|consen 244 QYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVI 323 (569)
T ss_pred EEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEE
Confidence 22221 1222221 1222222222233344557899999999999999999999999999999999
Q ss_pred eec-----------------------------------cccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEE
Q 001155 654 ATV-----------------------------------AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 698 (1136)
Q Consensus 654 AT~-----------------------------------alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~ 698 (1136)
||+ -.++|||+..|..|||||+|.++..|+||+||++|.+++|.+
T Consensus 324 AtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta 403 (569)
T KOG0346|consen 324 ATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA 403 (569)
T ss_pred EccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce
Confidence 997 136899999999999999999999999999999999999999
Q ss_pred EEEeccccHH
Q 001155 699 VLYYSYSDFI 708 (1136)
Q Consensus 699 il~~~~~D~~ 708 (1136)
+.|+.+.+..
T Consensus 404 lSfv~P~e~~ 413 (569)
T KOG0346|consen 404 LSFVSPKEEF 413 (569)
T ss_pred EEEecchHHh
Confidence 9999998766
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.8e-34 Score=360.28 Aligned_cols=309 Identities=22% Similarity=0.215 Sum_probs=230.4
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC------CcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG------HDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVS 444 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g------~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtra 444 (1136)
.++....+...+.+.|||. ++++|.+||+.++.+ .|.+++||||+|||.+|++|++. .+.+++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3455567778888889995 899999999999874 68999999999999999988873 4788999999999
Q ss_pred hHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 445 LIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 445 L~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
|+.|++..+.++ ++++..++|.....++...+..+.. +.++|||+||..+.. ...+..+++|||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVIGTp~ll~~----------~v~f~~L~llVI 579 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS--GKIDILIGTHKLLQK----------DVKFKDLGLLII 579 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEEchHHHhhC----------CCCcccCCEEEe
Confidence 999999988774 6788889998887777777766654 679999999964421 112345899999
Q ss_pred eccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEec-ccCCCCchh-----hhHH-
Q 001155 521 DEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFR-QSFNRPNLW-----MDCE- 593 (1136)
Q Consensus 521 DEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~-~s~~r~nl~-----~~~e- 593 (1136)
||+|++ |...+ ..+....+++++++||||+.+...... ..++.+..++. .+..|..+. ....
T Consensus 580 DEahrf---gv~~~------~~L~~~~~~~~vL~~SATpiprtl~~~--l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~ 648 (926)
T TIGR00580 580 DEEQRF---GVKQK------EKLKELRTSVDVLTLSATPIPRTLHMS--MSGIRDLSIIATPPEDRLPVRTFVMEYDPEL 648 (926)
T ss_pred eccccc---chhHH------HHHHhcCCCCCEEEEecCCCHHHHHHH--HhcCCCcEEEecCCCCccceEEEEEecCHHH
Confidence 999993 43222 233444567899999999888654432 23333333222 222332221 0111
Q ss_pred ---HHHHHHHh----cccccchhhHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC
Q 001155 594 ---KVAERLQV----GLSYGHFFLLKEFYVVSLE--CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664 (1136)
Q Consensus 594 ---~lae~L~~----~l~~~~~~~~~~~~~~l~~--~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl 664 (1136)
.+...+.. .+.+........++..+.. .++++..+||+|+..+|..+++.|.+|+++|||||+++++|||+
T Consensus 649 i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI 728 (926)
T TIGR00580 649 VREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI 728 (926)
T ss_pred HHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc
Confidence 11222221 1222233334444444444 36889999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 665 PDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 665 P~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
|++++||++++|. +...|+||+||+||.|+.|.|++++...+
T Consensus 729 p~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 9999999999975 78899999999999999999999986543
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.3e-33 Score=351.12 Aligned_cols=300 Identities=23% Similarity=0.316 Sum_probs=220.3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCC------CcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHH
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSG------HDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQI 450 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g------~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv 450 (1136)
.+.+.+.+.++| .|+++|.+|++.+..+ .+.|++||||||||++|++|++.. +.+++|++||++|+.|++
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHH
Confidence 455566667788 5999999999999876 479999999999999999998743 668999999999999999
Q ss_pred HHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 451 MHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 451 ~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
..+.++ |+++..++|+....++...+..+.. +.++|+|+||+.+.. . ..+..+++|||||+|++
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~--~--------v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQD--D--------VEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcc--c--------chhcccceEEEechhhh
Confidence 988765 6899999999998877777776654 679999999998742 1 12345899999999985
Q ss_pred cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceE-EecccCCCCchh------hhHHHHHHHH
Q 001155 527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCI-IFRQSFNRPNLW------MDCEKVAERL 599 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~-i~~~s~~r~nl~------~~~e~lae~L 599 (1136)
|...|.. +......+++++||||+.+...... ..+..... +...+..+..+. ...+.+.+.+
T Consensus 396 ---g~~qr~~------l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i 464 (681)
T PRK10917 396 ---GVEQRLA------LREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERI 464 (681)
T ss_pred ---hHHHHHH------HHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHH
Confidence 3333332 2333346789999999887643321 22222221 111222222221 1112222222
Q ss_pred Hhc--------ccccc--------hhhHHHHHHHHhhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccc
Q 001155 600 QVG--------LSYGH--------FFLLKEFYVVSLEC--GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661 (1136)
Q Consensus 600 ~~~--------l~~~~--------~~~~~~~~~~l~~~--g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~G 661 (1136)
... +.+.. .......+..+... ++.+..+||+|+..+|..+++.|++|+++|||||+++++|
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 211 11110 11122333333333 4789999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEec
Q 001155 662 INKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYS 703 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~~ 703 (1136)
||+|++++||++++|. +...|.|++||+||.|..|.|+++++
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999997 68889999999999999999999995
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.4e-34 Score=349.22 Aligned_cols=312 Identities=25% Similarity=0.329 Sum_probs=239.5
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---C--------CcEEEEccChhh
Q 001155 377 WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---P--------GITLVISPLVSL 445 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~--------g~~LVIsPtraL 445 (1136)
+.+.+.+.++.. |.+|||.|.+||+.+++|+|+||+||||||||+++.||++.. . -.+|||+|++||
T Consensus 8 l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 8 LDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred cCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 346677777776 899999999999999999999999999999999999999842 1 258999999999
Q ss_pred HHHHHHHHHH----cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeee
Q 001155 446 IQDQIMHLLQ----ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVID 521 (1136)
Q Consensus 446 ~~dqv~~L~~----~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVID 521 (1136)
..|+..+|.. .|+++.+-+|+++..+++...++ .++|+++|||.|. .+...-.....+..+++||||
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~------PPdILiTTPEsL~---lll~~~~~r~~l~~vr~VIVD 156 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN------PPHILITTPESLA---ILLNSPKFRELLRDVRYVIVD 156 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC------CCcEEEeChhHHH---HHhcCHHHHHHhcCCcEEEee
Confidence 9999998865 49999999999998877765543 8999999999994 333332445556779999999
Q ss_pred cccccc--ccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcc--eEEecccCCCC-chh-------
Q 001155 522 EAHCVS--QWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVN--CIIFRQSFNRP-NLW------- 589 (1136)
Q Consensus 522 EAH~ls--~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~--~~i~~~s~~r~-nl~------- 589 (1136)
|+|.+. ..|+..- ..|..+....++.+.++||||..+. .++.++|.-.. +.++.....+. .+.
T Consensus 157 EiHel~~sKRG~~Ls---l~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~ 231 (814)
T COG1201 157 EIHALAESKRGVQLA---LSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVED 231 (814)
T ss_pred hhhhhhccccchhhh---hhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCc
Confidence 999995 3443222 2244455555578899999999976 67888886653 34433322221 111
Q ss_pred ---------hhHHHHHHHHHh---cccc-cchhhHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEee
Q 001155 590 ---------MDCEKVAERLQV---GLSY-GHFFLLKEFYVVSLECG-HKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655 (1136)
Q Consensus 590 ---------~~~e~lae~L~~---~l~~-~~~~~~~~~~~~l~~~g-~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT 655 (1136)
...+.+.+.++. .+.+ +.......+...+...+ ..+..|||.++.+.|..+++.|++|+++++|||
T Consensus 232 ~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T 311 (814)
T COG1201 232 LIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT 311 (814)
T ss_pred cccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEc
Confidence 122333333332 2333 33334444555555554 789999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEcCCCCCHhHHHHHhcccCC-CCCCcEEEEEecc
Q 001155 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR-DGQRSSCVLYYSY 704 (1136)
Q Consensus 656 ~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR-~G~~g~~il~~~~ 704 (1136)
+.++.|||+.+++.|||++.|+++...+||+||+|+ .|..+.++++...
T Consensus 312 SSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 312 SSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred cchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999997 4567888888765
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-33 Score=347.28 Aligned_cols=298 Identities=20% Similarity=0.306 Sum_probs=214.1
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHCC------CcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHH
Q 001155 381 LEANNKKVFGNHSFRPNQREIINATMSG------HDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIM 451 (1136)
Q Consensus 381 l~~~lk~~fG~~~lrpiQ~eaI~~il~g------~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~ 451 (1136)
+...+.+.++| +|+++|.+|++.++.+ .+.+++||||+|||++|++|++. .+.+++|++||++|+.|+++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~ 302 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYN 302 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHH
Confidence 33444555688 6999999999999865 25899999999999999998874 36789999999999999998
Q ss_pred HHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 452 HLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 452 ~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
.+.++ |+++..++|+....++...+..+.. +.++|+|+||+.+... ..+..+++|||||+|++
T Consensus 303 ~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiVgT~~ll~~~----------~~~~~l~lvVIDEaH~f- 369 (630)
T TIGR00643 303 SLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--GQIHLVVGTHALIQEK----------VEFKRLALVIIDEQHRF- 369 (630)
T ss_pred HHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEEecHHHHhcc----------ccccccceEEEechhhc-
Confidence 88765 7999999999988877777666654 6789999999987421 12345899999999984
Q ss_pred ccCCCCccchhhhhhhhccCC---CCCEEEEeeccchhhHHHHHHHhc-CcceEEecccCCCCchh----------hhHH
Q 001155 528 QWGHDFRPDYQGLGILKQKFP---NTPVLALTATATASVKEDVVQALG-LVNCIIFRQSFNRPNLW----------MDCE 593 (1136)
Q Consensus 528 ~wGhdfR~~y~~L~~l~~~~p---~~~iv~LSAT~~~~v~~dI~~~L~-l~~~~i~~~s~~r~nl~----------~~~e 593 (1136)
|...|..+ ..... .+++++||||+.+...... ..+ +....+...+..+..+. ...+
T Consensus 370 --g~~qr~~l------~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~ 439 (630)
T TIGR00643 370 --GVEQRKKL------REKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYE 439 (630)
T ss_pred --cHHHHHHH------HHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCcchHHHHHH
Confidence 43333322 22222 5789999999877543211 111 11111111111111111 1111
Q ss_pred HHHHHHHh---c-ccccch--------hhHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccc
Q 001155 594 KVAERLQV---G-LSYGHF--------FLLKEFYVVSLE--CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFG 659 (1136)
Q Consensus 594 ~lae~L~~---~-l~~~~~--------~~~~~~~~~l~~--~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg 659 (1136)
.+.+.+.. . +.+..+ ......+..+.. .++.+..+||+|+..+|..+++.|++|+++|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 22222221 1 111110 112223333332 467899999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEe
Q 001155 660 MGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYY 702 (1136)
Q Consensus 660 ~GIDlP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~ 702 (1136)
+|||+|++++||+++.|. +...|.|++||+||.|..|.|++++
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999997 7889999999999999999999999
No 50
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-34 Score=347.72 Aligned_cols=330 Identities=22% Similarity=0.312 Sum_probs=261.7
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----------CCcE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----------PGIT 436 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----------~g~~ 436 (1136)
..|. .-+++..++..+++ +||..++|||.+|||+++.|+|+|.+|-||+|||++|+||++.+ ++.+
T Consensus 365 ~sW~--q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~ 441 (997)
T KOG0334|consen 365 TSWT--QCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIA 441 (997)
T ss_pred chHh--hCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceE
Confidence 4565 34566888888844 59999999999999999999999999999999999999999954 5789
Q ss_pred EEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhh
Q 001155 437 LVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAR 512 (1136)
Q Consensus 437 LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~ 512 (1136)
||++||++|+.|+.+.+..+ ++.+++.+|+....++...+++ +..|+||||+++. |++...-..+...
T Consensus 442 li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR------g~eIvV~tpGRmi--D~l~~n~grvtnl 513 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR------GAEIVVCTPGRMI--DILCANSGRVTNL 513 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc------CCceEEeccchhh--hhHhhcCCccccc
Confidence 99999999999877776654 8999999999988887777665 5899999999997 7766555555565
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-----c
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-----N 587 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-----n 587 (1136)
.++-++|+||||++.++| |.|.... .+...-|..+++++|||.+..+.......+..+-.+++. ..... .
T Consensus 514 rR~t~lv~deaDrmfdmg--fePq~~~--Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~-~~svV~k~V~q 588 (997)
T KOG0334|consen 514 RRVTYLVLDEADRMFDMG--FEPQITR--ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG-GRSVVCKEVTQ 588 (997)
T ss_pred cccceeeechhhhhheec--cCcccch--HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc-cceeEeccceE
Confidence 667799999999999998 8888766 355556789999999999999766555566533222221 11100 0
Q ss_pred hh-------hhHHHHHHHHHh-------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 001155 588 LW-------MDCEKVAERLQV-------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIIC 653 (1136)
Q Consensus 588 l~-------~~~e~lae~L~~-------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLV 653 (1136)
.. ....++.+.|.. .++......+..+...+...|+.+..+|||.++.+|..+++.|++|.+.+||
T Consensus 589 ~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLv 668 (997)
T KOG0334|consen 589 VVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLV 668 (997)
T ss_pred EEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEE
Confidence 00 112223333322 1222222345566677778899999999999999999999999999999999
Q ss_pred eeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 654 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 654 AT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
||+.+++|+|++++.+||||++|.-.++|+||.||+||.|+.|.|++|..+.+..+.-.+
T Consensus 669 aTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl 728 (997)
T KOG0334|consen 669 ATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDL 728 (997)
T ss_pred ehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999766554433
No 51
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=324.26 Aligned_cols=330 Identities=21% Similarity=0.267 Sum_probs=227.5
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHC---------CCcEEEEccCCChHHHHHHhhhhhC-------CCcEEEEccCh
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMS---------GHDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLV 443 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~---------g~dvLV~APTGsGKTl~y~LpaL~~-------~g~~LVIsPtr 443 (1136)
.+.+.+.+. +++.+.|+|..+++.++. .+|++|.||||||||++|.||+++. .-++|||+|++
T Consensus 147 ~~~q~l~k~-~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr 225 (620)
T KOG0350|consen 147 TIDQLLVKM-AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTR 225 (620)
T ss_pred HHHHHHHHh-hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHH
Confidence 344445555 899999999999999862 4799999999999999999999864 34799999999
Q ss_pred hhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceee
Q 001155 444 SLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519 (1136)
Q Consensus 444 aL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVV 519 (1136)
+|+.|.+..|.++ |+.|+.+.|..+.......+.... ..+..+|||+||++|. |.+.. ...+ ....++++|
T Consensus 226 ~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~-~~~~~DIlVaTPGRLV--DHl~~-~k~f-~Lk~LrfLV 300 (620)
T KOG0350|consen 226 ELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP-PECRIDILVATPGRLV--DHLNN-TKSF-DLKHLRFLV 300 (620)
T ss_pred HHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC-CccccceEEcCchHHH--HhccC-CCCc-chhhceEEE
Confidence 9999999999886 777888888877665554443211 1235699999999997 54442 1111 234589999
Q ss_pred eeccccccc-----c--------CCC---------C---c-cchhhhhhhhc----cCCCCCEEEEeeccchhhHHHHHH
Q 001155 520 IDEAHCVSQ-----W--------GHD---------F---R-PDYQGLGILKQ----KFPNTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 520 IDEAH~ls~-----w--------Ghd---------f---R-~~y~~L~~l~~----~~p~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
|||||+|++ | +++ + + +.-..+..+.. .+|....+.+|||++.....-.
T Consensus 301 IDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~-- 378 (620)
T KOG0350|consen 301 IDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK-- 378 (620)
T ss_pred echHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh--
Confidence 999999974 3 111 0 0 00001111111 2233346889999887643322
Q ss_pred HhcCcceEEeccc------CCCCchh----------hhHHHHHHHH-----Hhc-ccccchhhHHHHH----HHHhhcCC
Q 001155 570 ALGLVNCIIFRQS------FNRPNLW----------MDCEKVAERL-----QVG-LSYGHFFLLKEFY----VVSLECGH 623 (1136)
Q Consensus 570 ~L~l~~~~i~~~s------~~r~nl~----------~~~e~lae~L-----~~~-l~~~~~~~~~~~~----~~l~~~g~ 623 (1136)
.|.+..+..|... +.-|... .....+...+ ... .+.........+. ..+....+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 2334333222111 1111110 0000111111 111 1111111111111 22334566
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEec
Q 001155 624 KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 703 (1136)
Q Consensus 624 ~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~ 703 (1136)
++..|.|++....|...++.|..|+++||||+++++||||+.+|+.||+||+|.+...|+||+||++|+|+.|.|+.+..
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhcC
Q 001155 704 YSDFIRVKHMISQG 717 (1136)
Q Consensus 704 ~~D~~~~~~li~~~ 717 (1136)
..+...+.+++++.
T Consensus 539 ~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKT 552 (620)
T ss_pred cccchHHHHHHHHh
Confidence 99999998888763
No 52
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=329.16 Aligned_cols=328 Identities=21% Similarity=0.257 Sum_probs=236.3
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----------CCcEEEEccCh
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLV 443 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----------~g~~LVIsPtr 443 (1136)
+.....+.+.+... ||..++|+|.+|++.++.++|+++|||||+|||++|.+|++.+ +-+++|++|++
T Consensus 141 ~~~~~~ll~nl~~~-~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQEL-GFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhhC-CCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 34456676666665 9999999999999999999999999999999999999999854 34799999999
Q ss_pred hhHHHHHHHHHHcC------CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 444 SLIQDQIMHLLQAN------IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 444 aL~~dqv~~L~~~g------I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+|+.|...++.++. +.+..+............+.. ..+++++.||-++. ..+..... ......|.+
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~-----~k~dili~TP~ri~--~~~~~~~~-~idl~~V~~ 291 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSD-----EKYDILISTPMRIV--GLLGLGKL-NIDLSKVEW 291 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHH-----HHHHHHhcCHHHHH--HHhcCCCc-cchhheeee
Confidence 99999999998874 333444433222222222221 36889999999874 22211100 013455899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh--------
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-------- 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-------- 589 (1136)
+|+||||++.+- ..|+.....|-..+.. |++.+-+||||.+.++.+-..........+++... +-.+..
T Consensus 292 lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-~sa~~~V~QelvF~ 368 (593)
T KOG0344|consen 292 LVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-NSANETVDQELVFC 368 (593)
T ss_pred EeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHHHhhccceeEEEecc-hhHhhhhhhhheee
Confidence 999999999664 1244444444333333 78888899999999886644443332222222110 000100
Q ss_pred -hhHHHHH---HHHHh------cccccchhhHHHHHHHH-hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccc
Q 001155 590 -MDCEKVA---ERLQV------GLSYGHFFLLKEFYVVS-LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658 (1136)
Q Consensus 590 -~~~e~la---e~L~~------~l~~~~~~~~~~~~~~l-~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~al 658 (1136)
.+..++. +.+.. ++...+....++++..+ .-.++.+.++||..++.+|.+++++|+.|++.||+||+.+
T Consensus 369 gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll 448 (593)
T KOG0344|consen 369 GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLL 448 (593)
T ss_pred ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhh
Confidence 0111111 11111 12222333345666666 6678899999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 659 g~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
++|||+.+++.||+||+|.+...|+||+||+||+|+.|.+++||+..|..+++.+.
T Consensus 449 ~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 449 ARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred hccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999998877654
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.2e-32 Score=354.17 Aligned_cols=307 Identities=21% Similarity=0.201 Sum_probs=226.0
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC------CcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG------HDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVS 444 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g------~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtra 444 (1136)
.|+....+...+...|+| .++++|.+||+.++.+ +|+|+|+|||+|||.+|+++++ ..+.+++|++||++
T Consensus 582 ~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~e 660 (1147)
T PRK10689 582 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660 (1147)
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHH
Confidence 355556677777888899 6999999999999986 7999999999999999988765 34778999999999
Q ss_pred hHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 445 LIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 445 L~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
|+.|++..|.+. ++++.+++|..+..++...+..+.. +.++|+|+||+.+.. + . ....+++|||
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~--g~~dIVVgTp~lL~~-~--------v-~~~~L~lLVI 728 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE--GKIDILIGTHKLLQS-D--------V-KWKDLGLLIV 728 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh--CCCCEEEECHHHHhC-C--------C-CHhhCCEEEE
Confidence 999999988764 5778889998888887777666553 578999999975521 1 1 1235899999
Q ss_pred eccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh------hh--
Q 001155 521 DEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW------MD-- 591 (1136)
Q Consensus 521 DEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~------~~-- 591 (1136)
||+|++ |..+ ...+....+++++++||||+.+.+...... ++.++.++.. +..+..+. ..
T Consensus 729 DEahrf---G~~~------~e~lk~l~~~~qvLl~SATpiprtl~l~~~--gl~d~~~I~~~p~~r~~v~~~~~~~~~~~ 797 (1147)
T PRK10689 729 DEEHRF---GVRH------KERIKAMRADVDILTLTATPIPRTLNMAMS--GMRDLSIIATPPARRLAVKTFVREYDSLV 797 (1147)
T ss_pred echhhc---chhH------HHHHHhcCCCCcEEEEcCCCCHHHHHHHHh--hCCCcEEEecCCCCCCCceEEEEecCcHH
Confidence 999995 4222 233444556899999999998877554332 3334433322 22222221 00
Q ss_pred -HHHHHHHHHh----cccccchhhHHHHHHHHhhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC
Q 001155 592 -CEKVAERLQV----GLSYGHFFLLKEFYVVSLEC--GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664 (1136)
Q Consensus 592 -~e~lae~L~~----~l~~~~~~~~~~~~~~l~~~--g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl 664 (1136)
.+.+...+.. .+.+........+...+... +.++..+||+|+..+|..++..|++|+++|||||+++++|||+
T Consensus 798 ~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI 877 (1147)
T PRK10689 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 (1147)
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc
Confidence 1111222211 12222223334445555444 6789999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCC-CCHhHHHHHhcccCCCCCCcEEEEEecc
Q 001155 665 PDVRFVIHHSLP-KSIEGYHQECGRAGRDGQRSSCVLYYSY 704 (1136)
Q Consensus 665 P~V~~VIh~d~P-~Sie~YiQriGRAGR~G~~g~~il~~~~ 704 (1136)
|++++||..+.. .++..|+|++||+||.|..|.|++++..
T Consensus 878 P~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999955443 3567899999999999999999999864
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.4e-32 Score=352.84 Aligned_cols=278 Identities=24% Similarity=0.298 Sum_probs=196.2
Q ss_pred EEccCCChHHHHHHhhhhhC----------------CCcEEEEccChhhHHHHHHHHHH----------------cCCCe
Q 001155 413 VLMPTGGGKSLTYQLPALIC----------------PGITLVISPLVSLIQDQIMHLLQ----------------ANIPA 460 (1136)
Q Consensus 413 V~APTGsGKTl~y~LpaL~~----------------~g~~LVIsPtraL~~dqv~~L~~----------------~gI~v 460 (1136)
|+||||||||++|.||++.. +.++|||+|+++|+.|+.+.|.. .++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 58999999999999998732 24799999999999999998753 26788
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc--cCCCCccchh
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ--WGHDFRPDYQ 538 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~--wGhdfR~~y~ 538 (1136)
..++|+.+..++...++. .++|||+|||+|. .++.++. ......+++|||||+|.|.+ +|..+...+.
T Consensus 81 ~vrtGDt~~~eR~rll~~------ppdILVTTPEsL~--~LLtsk~--r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~Le 150 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRN------PPDILITTPESLY--LMLTSRA--RETLRGVETVIIDEVHAVAGSKRGAHLALSLE 150 (1490)
T ss_pred EEEECCCCHHHHHHHhcC------CCCEEEecHHHHH--HHHhhhh--hhhhccCCEEEEecHHHhcccccccHHHHHHH
Confidence 999999998877665442 7899999999994 3444332 23456799999999999974 5655555555
Q ss_pred hhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce-EEecccCCCCc-hh--h------------------------
Q 001155 539 GLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNC-IIFRQSFNRPN-LW--M------------------------ 590 (1136)
Q Consensus 539 ~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~-~i~~~s~~r~n-l~--~------------------------ 590 (1136)
+|..+.. .+.++|+||||+.+. +++.++|+...+ .++..+..++. +. .
T Consensus 151 RL~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~ 226 (1490)
T PRK09751 151 RLDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGRE 226 (1490)
T ss_pred HHHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhh
Confidence 5544421 357899999999985 678888865422 22222111110 00 0
Q ss_pred -----hH-HHHHHHHH---hcccccc-hhhHHHHHHHHhhc---------------------------------CCeEEE
Q 001155 591 -----DC-EKVAERLQ---VGLSYGH-FFLLKEFYVVSLEC---------------------------------GHKAAF 627 (1136)
Q Consensus 591 -----~~-e~lae~L~---~~l~~~~-~~~~~~~~~~l~~~---------------------------------g~~v~~ 627 (1136)
.+ ..+.+.+. ..+.+.+ ......+...+.+. .+.+..
T Consensus 227 ~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 306 (1490)
T PRK09751 227 GSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARS 306 (1490)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeee
Confidence 00 01111111 1222222 22222222222111 123678
Q ss_pred EcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCC-CCCcEEEEEecc
Q 001155 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD-GQRSSCVLYYSY 704 (1136)
Q Consensus 628 ~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~-G~~g~~il~~~~ 704 (1136)
|||+|++++|..+++.|++|+++|||||+++++|||+++|++||+|+.|.|+.+|+||+|||||. |..+.++++...
T Consensus 307 HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 307 HHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred ccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999995 446677755443
No 55
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-32 Score=312.50 Aligned_cols=320 Identities=17% Similarity=0.199 Sum_probs=240.7
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHHH
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQD 448 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~d 448 (1136)
+.+...++..|+.. ||..++++|..|||.++.+-|+||.|..|+|||++|-+.++.. ....+||+|||+|+-|
T Consensus 30 l~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQ 108 (980)
T KOG4284|consen 30 LALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQ 108 (980)
T ss_pred HHHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhH
Confidence 34556777777777 9999999999999999999999999999999999998877743 4678999999999887
Q ss_pred HHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 449 QIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 449 qv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
+-..+.+. |.++.++.|+.........+ ..++|+|+||+++. .++... ......++++|+|||
T Consensus 109 I~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-------k~~rIvIGtPGRi~--qL~el~---~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 109 IKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-------KQTRIVIGTPGRIA--QLVELG---AMNMSHVRLFVLDEA 176 (980)
T ss_pred HHHHHHHhcccccCcceEEEecCchhhhhhhhh-------hhceEEecCchHHH--HHHHhc---CCCccceeEEEeccH
Confidence 76666664 77888888887766544433 26889999999996 222211 122356999999999
Q ss_pred ccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-------------
Q 001155 524 HCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------- 589 (1136)
Q Consensus 524 H~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------- 589 (1136)
|.|.+-+. |+.++ ..+...+| ..+++++|||.+......+.+++.- +.+++...+.+.++
T Consensus 177 DkL~~t~s-fq~~I---n~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrd--p~lVr~n~~d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 177 DKLMDTES-FQDDI---NIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRD--PALVRFNADDVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred Hhhhchhh-HHHHH---HHHHHhcchhheeeEEeccCchhHHHHHHHHhcc--cceeecccCCceeechhheeeeccCCc
Confidence 99988653 66554 44556666 5679999999999988888777643 22222222222222
Q ss_pred ---hhHHHHHHHHHhccc---cc-------chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeec
Q 001155 590 ---MDCEKVAERLQVGLS---YG-------HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV 656 (1136)
Q Consensus 590 ---~~~e~lae~L~~~l~---~~-------~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~ 656 (1136)
...+...+.|...+. |. ..-....+...+...|+.+.++.|.|.+.+|..+++.++.-.++|||+|+
T Consensus 251 nsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred chHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc
Confidence 111222222222111 11 11112334456667899999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH-HHHHHH
Q 001155 657 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF-IRVKHM 713 (1136)
Q Consensus 657 alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~-~~~~~l 713 (1136)
..++|||-++|..||+.|+|.+-+.|+||||||||.|..|.+|.|+..... +.+..|
T Consensus 331 LtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 331 LTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred hhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999999999999999865543 444433
No 56
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=293.62 Aligned_cols=324 Identities=18% Similarity=0.248 Sum_probs=243.1
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHC--CCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMS--GHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSL 445 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL 445 (1136)
++.+.+++++.+-. ++|..+..||..++|.++. -+|+|..+..|+|||.||.|.+|.+ .+.++.|+|+++|
T Consensus 94 eL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrEL 172 (477)
T KOG0332|consen 94 ELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTREL 172 (477)
T ss_pred hhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHH
Confidence 55667899888887 4999999999999999997 4789999999999999999999966 5678999999999
Q ss_pred HHHHHHHHHHcC----CCeEEec-CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 446 IQDQIMHLLQAN----IPATFLS-GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 446 ~~dqv~~L~~~g----I~v~~L~-g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
+.|..+-+.+.| +.+.+.. ++..... .. -.-+|++.||+.+. |+..+ +. +.....++.+|+
T Consensus 173 A~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~---------i~eqIviGTPGtv~--Dlm~k-lk-~id~~kikvfVl 238 (477)
T KOG0332|consen 173 APQTGEVVEEMGKFTELTASYAIRGSKAKRG-NK---------LTEQIVIGTPGTVL--DLMLK-LK-CIDLEKIKVFVL 238 (477)
T ss_pred HHHHHHHHHHhcCceeeeEEEEecCcccccC-Cc---------chhheeeCCCccHH--HHHHH-HH-hhChhhceEEEe
Confidence 999888888875 3443332 3211111 01 14579999999996 55544 22 223345899999
Q ss_pred eccccccc-cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh---hhHHH-
Q 001155 521 DEAHCVSQ-WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW---MDCEK- 594 (1136)
Q Consensus 521 DEAH~ls~-wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~---~~~e~- 594 (1136)
|||+.+.+ .| |+..-.+| .+...++.++++||||....+.......+.-.+.+.... ...-.++. ..|..
T Consensus 239 DEAD~Mi~tqG--~~D~S~rI--~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 239 DEADVMIDTQG--FQDQSIRI--MRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred cchhhhhhccc--ccccchhh--hhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch
Confidence 99998864 44 55544333 222334889999999999999888888776666555432 22223332 22211
Q ss_pred ------HHH---HHH---hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccc
Q 001155 595 ------VAE---RLQ---VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662 (1136)
Q Consensus 595 ------lae---~L~---~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GI 662 (1136)
+.+ .+. ..+++........++..+...|+.+..+||.|.-++|..+.+.|+.|..+|||+|++++|||
T Consensus 315 ~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGi 394 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGI 394 (477)
T ss_pred hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccc
Confidence 111 111 11222233345677888889999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCCCC------CHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 663 NKPDVRFVIHHSLPK------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 663 DlP~V~~VIh~d~P~------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
|++.|.+||+||+|- +.+.|+||+||+||.|+.|.++-|....+...+..-|++
T Consensus 395 Dv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 395 DVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQK 454 (477)
T ss_pred ccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHH
Confidence 999999999999996 789999999999999999999999987776555444433
No 57
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3e-31 Score=294.25 Aligned_cols=329 Identities=19% Similarity=0.263 Sum_probs=255.2
Q ss_pred CCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccC
Q 001155 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 442 (1136)
Q Consensus 369 ~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPt 442 (1136)
+|+ +..+.+.|+.-+..+ ||..|..+|+.||..+..|.|+++.+++|+|||.+|.++++.. ...+|+++|+
T Consensus 27 sfd--dm~L~e~LLrgiy~y-GFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 27 SFD--DMNLKESLLRGIYAY-GFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhh--hcCCCHHHHhHHHhh-ccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 455 445558888777666 9999999999999999999999999999999999999999976 3568999999
Q ss_pred hhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcccee
Q 001155 443 VSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518 (1136)
Q Consensus 443 raL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lV 518 (1136)
++|+++........ +..+..+.|+.....+...+.. ...+|+++||+++. +.+.+. .+ ....++++
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~-----~~~hivvGTpgrV~--dml~~~--~l-~~~~iKmf 173 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLK-----DKPHIVVGTPGRVF--DMLNRG--SL-STDGIKMF 173 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhc-----cCceeecCCchhHH--Hhhccc--cc-cccceeEE
Confidence 99999877666655 5677777777766644444333 36899999999986 544433 22 23458999
Q ss_pred eeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-------------cCCC
Q 001155 519 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-------------SFNR 585 (1136)
Q Consensus 519 VIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-------------s~~r 585 (1136)
|+|||+.+...| |+..+..| +....++++++++|||.+..+..--.+++.-.-.+.... ....
T Consensus 174 vlDEaDEmLs~g--fkdqI~~i--f~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k 249 (397)
T KOG0327|consen 174 VLDEADEMLSRG--FKDQIYDI--FQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEK 249 (397)
T ss_pred eecchHhhhccc--hHHHHHHH--HHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccc
Confidence 999999999876 88877655 455556899999999999998765555543222221110 0011
Q ss_pred CchhhhHHHHHHHHH-hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC
Q 001155 586 PNLWMDCEKVAERLQ-VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664 (1136)
Q Consensus 586 ~nl~~~~e~lae~L~-~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl 664 (1136)
+.-....-.+.+.+. ..++.+....+..+...+...++.+..+|+.|.+.+|..+.+.|+.|..+|||.|+.+++|+|+
T Consensus 250 ~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv 329 (397)
T KOG0327|consen 250 EEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDV 329 (397)
T ss_pred cccccHHHHHHHhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccch
Confidence 110001111222222 2445556666777888888999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 665 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 665 P~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
..+..||+|++|...++|+||+||+||.|.+|.++.|+...|...++.+-
T Consensus 330 ~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 330 QQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred hhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHH
Confidence 99999999999999999999999999999999999999998887777654
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=295.27 Aligned_cols=316 Identities=21% Similarity=0.296 Sum_probs=229.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHH-HHCCCcEEEEccCCChHHHHHHhhhh---hC-CCcEEEEccChhhHHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINA-TMSGHDVFVLMPTGGGKSLTYQLPAL---IC-PGITLVISPLVSLIQD 448 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~-il~g~dvLV~APTGsGKTl~y~LpaL---~~-~g~~LVIsPtraL~~d 448 (1136)
.+++.+.+...++.. |++.+.|+|..++.+ ++.|+|.+|+.+|++|||++..|+-+ +. +++.|+++|+.+|++|
T Consensus 198 eLdipe~fk~~lk~~-G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQ 276 (830)
T COG1202 198 ELDIPEKFKRMLKRE-GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276 (830)
T ss_pred ccCCcHHHHHHHHhc-CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcc
Confidence 344557888888777 999999999999987 56899999999999999999876654 33 7899999999999999
Q ss_pred HHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccc
Q 001155 449 QIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAH 524 (1136)
Q Consensus 449 qv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH 524 (1136)
.+..|... |+++..-.|..-......... .......+|||+|.|-+ |.+.|.-. ....++.|||||+|
T Consensus 277 Ky~dF~~rYs~LglkvairVG~srIk~~~~pv~--~~t~~dADIIVGTYEGi---D~lLRtg~---~lgdiGtVVIDEiH 348 (830)
T COG1202 277 KYEDFKERYSKLGLKVAIRVGMSRIKTREEPVV--VDTSPDADIIVGTYEGI---DYLLRTGK---DLGDIGTVVIDEIH 348 (830)
T ss_pred hHHHHHHHhhcccceEEEEechhhhcccCCccc--cCCCCCCcEEEeechhH---HHHHHcCC---cccccceEEeeeee
Confidence 99888764 777765555433222211000 01124789999999998 77777553 34569999999999
Q ss_pred cccc--cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEE------------ecc-cCCCCchh
Q 001155 525 CVSQ--WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCII------------FRQ-SFNRPNLW 589 (1136)
Q Consensus 525 ~ls~--wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i------------~~~-s~~r~nl~ 589 (1136)
.|.+ .||-.- -.+..++..+|..|+++||||..+. ..+...|+..-..+ |.. .....++.
T Consensus 349 tL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii 423 (830)
T COG1202 349 TLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDII 423 (830)
T ss_pred eccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHH
Confidence 9965 453221 2256788889999999999999988 67888887653322 111 11111111
Q ss_pred hhHHHHHH-HHHh----------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccc
Q 001155 590 MDCEKVAE-RLQV----------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658 (1136)
Q Consensus 590 ~~~e~lae-~L~~----------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~al 658 (1136)
.++++ .... .++.........+...+...|+++.+|||||+..+|+.++..|.++++.++|.|.++
T Consensus 424 ---~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL 500 (830)
T COG1202 424 ---ARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAAL 500 (830)
T ss_pred ---HHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhh
Confidence 11110 0000 111122223345555666789999999999999999999999999999999999999
Q ss_pred cccccCCCccEEE---EcCCC-CCHhHHHHHhcccCCCCC--CcEEEEEecccc
Q 001155 659 GMGINKPDVRFVI---HHSLP-KSIEGYHQECGRAGRDGQ--RSSCVLYYSYSD 706 (1136)
Q Consensus 659 g~GIDlP~V~~VI---h~d~P-~Sie~YiQriGRAGR~G~--~g~~il~~~~~D 706 (1136)
+-|||+|+-.+|+ -.+.- -|+.+|.||.|||||++. .|.++++..+..
T Consensus 501 ~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 501 AAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred hcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 9999999877765 23333 389999999999999987 688888876653
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=2.2e-29 Score=310.40 Aligned_cols=304 Identities=15% Similarity=0.151 Sum_probs=203.9
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHCCC-cEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHHHHHHHH
Q 001155 381 LEANNKKVFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 381 l~~~lk~~fG~~~lrpiQ~eaI~~il~g~-dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~dqv~~L 453 (1136)
..+.+++..||. |+|||.++|+.++.|+ ++++.+|||+|||.++.++.+.. ..+.|+++|+|+|+.|+.+.+
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHH
Confidence 445667777998 9999999999999998 57778999999999654333311 224555779999999888777
Q ss_pred HHcC---------------------------CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHH-
Q 001155 454 LQAN---------------------------IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ- 505 (1136)
Q Consensus 454 ~~~g---------------------------I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~- 505 (1136)
.+.+ +++..+.|+.....+...+. .+++|||+|++.+.+ ..+.+.
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~------~~p~IIVgT~D~i~s-r~L~~gY 155 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDP------HRPAVIVGTVDMIGS-RLLFSGY 155 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcC------CCCcEEEECHHHHcC-Ccccccc
Confidence 5542 66788899988776655443 378999999877643 222110
Q ss_pred -----HH--hhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCC---CCCEEEEeeccchhhHHHHHHHhcCcc
Q 001155 506 -----LE--SLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP---NTPVLALTATATASVKEDVVQALGLVN 575 (1136)
Q Consensus 506 -----l~--~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p---~~~iv~LSAT~~~~v~~dI~~~L~l~~ 575 (1136)
+. .......+.+||||||| ++.| |......|.......+ ..++++||||++..+.......+. .+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~-~p 230 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA-ED 230 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc-CC
Confidence 00 11124558999999999 3455 8877766644322222 258999999999876543333321 11
Q ss_pred eEE--ecccCCCCc---h-----h----hhHHHHHHHHH-----hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHH
Q 001155 576 CII--FRQSFNRPN---L-----W----MDCEKVAERLQ-----VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQ 636 (1136)
Q Consensus 576 ~~i--~~~s~~r~n---l-----~----~~~e~lae~L~-----~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~d 636 (1136)
..+ ......... . . ..+..+...+. .+++.+.......++..+...++ ..+||+|++.+
T Consensus 231 ~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~d 308 (844)
T TIGR02621 231 YKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAE 308 (844)
T ss_pred ceeecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHH
Confidence 110 000000000 0 0 01111111111 12334444556777777777776 89999999999
Q ss_pred HH-----HHHHHHhc----CC-------ceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEE-E
Q 001155 637 RA-----FVQKQWSK----DE-------INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC-V 699 (1136)
Q Consensus 637 R~-----~i~~~F~~----g~-------i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~-i 699 (1136)
|. .+++.|+. |. ..|||||+++++|||++. ++||++..| ++.|+||+||+||.|..+.+ +
T Consensus 309 R~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i 385 (844)
T TIGR02621 309 RDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQI 385 (844)
T ss_pred HhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceE
Confidence 99 88999987 44 789999999999999986 888888776 79999999999999985433 4
Q ss_pred EEe
Q 001155 700 LYY 702 (1136)
Q Consensus 700 l~~ 702 (1136)
.++
T Consensus 386 ~vv 388 (844)
T TIGR02621 386 AVV 388 (844)
T ss_pred EEE
Confidence 544
No 60
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=288.61 Aligned_cols=325 Identities=19% Similarity=0.229 Sum_probs=248.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-------CCcEEEEc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-------PGITLVIS 440 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-------~g~~LVIs 440 (1136)
..|.+ +.+...+..++.+. ||..++|+|++.||.+|.++|++..+-||+|||.||++|++.. +-++++++
T Consensus 21 g~fqs--mgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 21 GGFQS--MGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred CCccc--cCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 44553 44557777777777 9999999999999999999999999999999999999999854 35899999
Q ss_pred cChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 441 PLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 441 PtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
|+++|+.|.+.-+..+ +++..++.|+....++...+. .+++||++||+++... ..... .....+.
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~------~npDii~ATpgr~~h~--~vem~---l~l~sve 166 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN------ENPDIIIATPGRLLHL--GVEMT---LTLSSVE 166 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc------cCCCEEEecCceeeee--ehhee---cccccee
Confidence 9999999888777776 467777888877777766554 3899999999999742 11111 1234589
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEeccc---CCCCchh---
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQS---FNRPNLW--- 589 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s---~~r~nl~--- 589 (1136)
+||+|||+.|.++| |.+... .+....| +.+.+.||||+++....... -|+.++..++-. .-.+.+.
T Consensus 167 yVVfdEadrlfemg--fqeql~---e~l~rl~~~~QTllfSatlp~~lv~fak--aGl~~p~lVRldvetkise~lk~~f 239 (529)
T KOG0337|consen 167 YVVFDEADRLFEMG--FQEQLH---EILSRLPESRQTLLFSATLPRDLVDFAK--AGLVPPVLVRLDVETKISELLKVRF 239 (529)
T ss_pred eeeehhhhHHHhhh--hHHHHH---HHHHhCCCcceEEEEeccCchhhHHHHH--ccCCCCceEEeehhhhcchhhhhhe
Confidence 99999999999988 555443 3444444 67899999999987544332 355555544311 1111111
Q ss_pred ---hhHHHHHHHHHh---c------c-cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeec
Q 001155 590 ---MDCEKVAERLQV---G------L-SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV 656 (1136)
Q Consensus 590 ---~~~e~lae~L~~---~------l-~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~ 656 (1136)
...++.+..|.. . + ......++.-....+...|+.+..+++.|++.-|......|..++..+||.|+
T Consensus 240 ~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTd 319 (529)
T KOG0337|consen 240 FRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTD 319 (529)
T ss_pred eeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEeh
Confidence 223333333321 1 1 11222334445556678899999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 657 AFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 657 alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
.+++|+|+|-.+.||+||+|.+..-|+||+||+.|.|+.|.++.|+.+.|..++..+
T Consensus 320 vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred hhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 999999999999999999999999999999999999999999999999998876654
No 61
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=316.04 Aligned_cols=316 Identities=21% Similarity=0.263 Sum_probs=229.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc
Q 001155 382 EANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 382 ~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
...+.+. |+..|+++|.+|+..+.+|+|++|+.|||||||+||++|++.. ..++|||.||+||++||+.+|.++
T Consensus 60 ~~~l~~~-g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~ 138 (851)
T COG1205 60 KSALVKA-GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLREL 138 (851)
T ss_pred HHHHHHh-ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHH
Confidence 4444444 8888999999999999999999999999999999999999854 457899999999999999999886
Q ss_pred ----C--CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHH-HHHhhhhhhccceeeeecccccc-c
Q 001155 457 ----N--IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR-QLESLNARELLARIVIDEAHCVS-Q 528 (1136)
Q Consensus 457 ----g--I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r-~l~~l~~~~~l~lVVIDEAH~ls-~ 528 (1136)
+ +.+..++|+....++..+++ ..++||+++|.||. -.+++ ....+-....+++||+||+|-+- -
T Consensus 139 ~~~~~~~v~~~~y~Gdt~~~~r~~~~~------~pp~IllTNpdMLh--~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 139 ISDLPGKVTFGRYTGDTPPEERRAIIR------NPPDILLTNPDMLH--YLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHhCCCcceeeeecCCCChHHHHHHHh------CCCCEEEeCHHHHH--HHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 3 77888999998888766555 48999999999994 22333 33334444569999999999863 2
Q ss_pred cCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceE-Eeccc----------CCC----------C
Q 001155 529 WGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCI-IFRQS----------FNR----------P 586 (1136)
Q Consensus 529 wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~-i~~~s----------~~r----------~ 586 (1136)
.|.+....+++|..+...++ ..++|+.|||..+.. +...+..+..-.. +.... ..+ .
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRR 289 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhccc
Confidence 44444455577777777666 566899999988763 3333333332222 11111 111 1
Q ss_pred chhhhHHHHHHHH-Hhc----ccccchhhHHHHH----HHHhhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCceEEE
Q 001155 587 NLWMDCEKVAERL-QVG----LSYGHFFLLKEFY----VVSLECG----HKAAFYHGSIDPAQRAFVQKQWSKDEINIIC 653 (1136)
Q Consensus 587 nl~~~~e~lae~L-~~~----l~~~~~~~~~~~~----~~l~~~g----~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLV 653 (1136)
........++..+ ... .++.....++..+ ..+...+ ..+..|||+|...+|.+++..|++|++.+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 1112222222222 111 1111111122221 1222233 5689999999999999999999999999999
Q ss_pred eeccccccccCCCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 654 ATVAFGMGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 654 AT~alg~GIDlP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
+|+++.-|||+-+++.||.++.|. ++.++.|+.|||||.++.+..++++.....
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 999999999999999999999999 999999999999999988877777764433
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.3e-28 Score=279.23 Aligned_cols=303 Identities=22% Similarity=0.268 Sum_probs=209.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHc-CC---CeE
Q 001155 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQA-NI---PAT 461 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~-gI---~v~ 461 (1136)
+.-++|.+|..+...++.+ |+|+++|||-|||.++.+-+... ++++|+++||+.|+.|+...+.+. |+ .++
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3457899999999988877 99999999999999988877633 668999999999999999999886 66 467
Q ss_pred EecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhh
Q 001155 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541 (1136)
Q Consensus 462 ~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~ 541 (1136)
.++|.....++...+. ..+|+|+||..+.+ |+.. ... ....+.++|+||||+-- | .-.|-.+.
T Consensus 91 ~ltGev~p~~R~~~w~-------~~kVfvaTPQvveN-Dl~~-Gri---d~~dv~~lifDEAHRAv--G---nyAYv~Va 153 (542)
T COG1111 91 ALTGEVRPEEREELWA-------KKKVFVATPQVVEN-DLKA-GRI---DLDDVSLLIFDEAHRAV--G---NYAYVFVA 153 (542)
T ss_pred eecCCCChHHHHHHHh-------hCCEEEeccHHHHh-HHhc-Ccc---ChHHceEEEechhhhcc--C---cchHHHHH
Confidence 9999999998887764 57899999999863 4332 222 33448999999999952 2 11233333
Q ss_pred h-hhccCCCCCEEEEeeccchhhH--HHHHHHhcCcceEEecccCC--CCchh---------------------------
Q 001155 542 I-LKQKFPNTPVLALTATATASVK--EDVVQALGLVNCIIFRQSFN--RPNLW--------------------------- 589 (1136)
Q Consensus 542 ~-l~~~~p~~~iv~LSAT~~~~v~--~dI~~~L~l~~~~i~~~s~~--r~nl~--------------------------- 589 (1136)
. +...-.+..++|||||+..... ..+.+.|++....+-...-. ++-+.
T Consensus 154 ~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~ 233 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALK 233 (542)
T ss_pred HHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHH
Confidence 2 2333346679999999877542 35566666554333211000 00000
Q ss_pred ---------------------------------------------------hhHHHHHHHH------------H------
Q 001155 590 ---------------------------------------------------MDCEKVAERL------------Q------ 600 (1136)
Q Consensus 590 ---------------------------------------------------~~~e~lae~L------------~------ 600 (1136)
..+....+.| .
T Consensus 234 ~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~ 313 (542)
T COG1111 234 PRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA 313 (542)
T ss_pred HHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 0000000000 0
Q ss_pred ---------------------------------------------hc---------ccccch-hhHHHHHHHHhhcCCeE
Q 001155 601 ---------------------------------------------VG---------LSYGHF-FLLKEFYVVSLECGHKA 625 (1136)
Q Consensus 601 ---------------------------------------------~~---------l~~~~~-~~~~~~~~~l~~~g~~v 625 (1136)
.. +.+.++ .....+...+...|..+
T Consensus 314 ~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~ 393 (542)
T COG1111 314 TKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA 393 (542)
T ss_pred cccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc
Confidence 00 000000 00112223333344444
Q ss_pred E-EE--------cCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCc
Q 001155 626 A-FY--------HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 696 (1136)
Q Consensus 626 ~-~~--------Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g 696 (1136)
. .| ..||++.++.++++.|++|+++|||||++.+.|+|+|++++||.|++..|.-.++||.||+||. +.|
T Consensus 394 ~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~G 472 (542)
T COG1111 394 RVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKG 472 (542)
T ss_pred eeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCC
Confidence 2 22 3689999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred EEEEEeccc--cHHHHH
Q 001155 697 SCVLYYSYS--DFIRVK 711 (1136)
Q Consensus 697 ~~il~~~~~--D~~~~~ 711 (1136)
..++++..+ |..++.
T Consensus 473 rv~vLvt~gtrdeayy~ 489 (542)
T COG1111 473 RVVVLVTEGTRDEAYYY 489 (542)
T ss_pred eEEEEEecCchHHHHHH
Confidence 999998877 444443
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=9.2e-29 Score=286.54 Aligned_cols=281 Identities=18% Similarity=0.140 Sum_probs=191.6
Q ss_pred HHHHHHHHHHCCCc--EEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc--------CCCeEEecCC
Q 001155 397 NQREIINATMSGHD--VFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA--------NIPATFLSGN 466 (1136)
Q Consensus 397 iQ~eaI~~il~g~d--vLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~--------gI~v~~L~g~ 466 (1136)
+|.++++++.++.+ ++++||||+|||.||++|++....+++||+|+++|+.||.+.+... ++.+..++|+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998764 8899999999999999999988889999999999999999988765 3456666775
Q ss_pred CCHHHHHHH---------------HHHHhcccCcceEEEeChhhhhchHHHHHHHHh------hhhhhccceeeeecccc
Q 001155 467 MEWTEQQEI---------------LRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES------LNARELLARIVIDEAHC 525 (1136)
Q Consensus 467 ~~~~~~~~~---------------l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~------l~~~~~l~lVVIDEAH~ 525 (1136)
...+.+... ++.. .....+.|+++||+.| +.+++.+.. ......+++|||||+|+
T Consensus 81 ~~~d~~~~~~~~~~~~~g~~~~~~~r~~-~~~~~p~illT~p~~l---~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 81 TLKDIKEYANDKVGSSKGEKLYNLLRNP-IGTSTPIILLTNPDIF---VYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred chHHHHHhhhhhcccCccchhhhhHHHH-HhcCCCCEEEecHHHH---HHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 322211000 0000 0013678899999999 445543311 11245699999999999
Q ss_pred ccccCCCCccchhhhhhhhcc-CCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccC------------C------C-
Q 001155 526 VSQWGHDFRPDYQGLGILKQK-FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSF------------N------R- 585 (1136)
Q Consensus 526 ls~wGhdfR~~y~~L~~l~~~-~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~------------~------r- 585 (1136)
++.|++++...+..+..+... ....+++++|||+++.+...+...+.+..+.....+. . |
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRP 236 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccce
Confidence 998887666654443333222 2257999999999998877776653232222221111 0 0
Q ss_pred --Cchh-----------hhHHHHHHHHH----------hcccccchhhHHHHHHHHhhcC--CeEEEEcCCCCHHHHHHH
Q 001155 586 --PNLW-----------MDCEKVAERLQ----------VGLSYGHFFLLKEFYVVSLECG--HKAAFYHGSIDPAQRAFV 640 (1136)
Q Consensus 586 --~nl~-----------~~~e~lae~L~----------~~l~~~~~~~~~~~~~~l~~~g--~~v~~~Hagm~~~dR~~i 640 (1136)
+++. .....+++.+. .+++.........++..+...+ +.+..+||.+++.+|.++
T Consensus 237 ~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~ 316 (357)
T TIGR03158 237 VLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA 316 (357)
T ss_pred eccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh
Confidence 1111 11122222221 1233344455667777776654 578899999999998754
Q ss_pred HHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccC
Q 001155 641 QKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 690 (1136)
Q Consensus 641 ~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAG 690 (1136)
++.+|||||+++++|||+|.+ +|| ++ |.+++.|+||+||+|
T Consensus 317 ------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 378999999999999999987 566 44 899999999999997
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=99.96 E-value=6.1e-29 Score=320.73 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=201.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.++.+.+++.+|+ .|+++|.++++.++.|+|++++||||+|||..++++++. .+.++|||+||++|+.|++..+..
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4455667788898 799999999999999999999999999999755443332 257899999999999999999988
Q ss_pred c----CCCeEEecCCCC--HHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccccc
Q 001155 456 A----NIPATFLSGNME--WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQW 529 (1136)
Q Consensus 456 ~----gI~v~~L~g~~~--~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~w 529 (1136)
+ ++.+..+.|+.. ..+.......+.. +.++|+|+||++|. +.+ ..+ ....+++|||||||++++|
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~--~~~~IlV~Tp~rL~--~~~----~~l-~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKE--GDFDILVTTSQFLS--KNF----DEL-PKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhc--CCCCEEEECHHHHH--HHH----Hhc-cccccCEEEEEChHHhhhc
Confidence 7 455666665543 2333333333332 56899999999985 322 212 1234899999999999987
Q ss_pred CCC---------Cc------------------cchhhhhhhhccCC-----CCCEEEEeeccchh-hHHHHH-HHhcCcc
Q 001155 530 GHD---------FR------------------PDYQGLGILKQKFP-----NTPVLALTATATAS-VKEDVV-QALGLVN 575 (1136)
Q Consensus 530 Ghd---------fR------------------~~y~~L~~l~~~~p-----~~~iv~LSAT~~~~-v~~dI~-~~L~l~~ 575 (1136)
+++ |. +.|.++..+...+. ..+++++|||+++. ++..+. ..+++..
T Consensus 217 ~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v 296 (1176)
T PRK09401 217 SKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEV 296 (1176)
T ss_pred ccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEe
Confidence 654 42 22333333333221 56789999999875 333222 2222110
Q ss_pred eEEecccCCCCchh-------hhHHHHHHHHHh----cccccc-hhh---HHHHHHHHhhcCCeEEEEcCCCCHHHHHHH
Q 001155 576 CIIFRQSFNRPNLW-------MDCEKVAERLQV----GLSYGH-FFL---LKEFYVVSLECGHKAAFYHGSIDPAQRAFV 640 (1136)
Q Consensus 576 ~~i~~~s~~r~nl~-------~~~e~lae~L~~----~l~~~~-~~~---~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i 640 (1136)
-.......|+. ...+.+.+.+.. .+.+.. ... +..+...+...|+.+..+||+| + ..
T Consensus 297 ---~~~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~--~~ 368 (1176)
T PRK09401 297 ---GSPVFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E--RK 368 (1176)
T ss_pred ---cCcccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H--HH
Confidence 00011111111 112234444432 222222 122 5667777888999999999999 2 23
Q ss_pred HHHHhcCCceEEEe----eccccccccCCC-ccEEEEcCCCC------CHhHHHHHhcccC
Q 001155 641 QKQWSKDEINIICA----TVAFGMGINKPD-VRFVIHHSLPK------SIEGYHQECGRAG 690 (1136)
Q Consensus 641 ~~~F~~g~i~VLVA----T~alg~GIDlP~-V~~VIh~d~P~------Sie~YiQriGRAG 690 (1136)
++.|++|+++|||| |++++||||+|+ |++||||++|+ ..+.|.+++||+-
T Consensus 369 l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 369 FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 49999999999999 589999999999 89999999999 5678999999995
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=9.5e-29 Score=286.29 Aligned_cols=286 Identities=17% Similarity=0.182 Sum_probs=182.1
Q ss_pred cEEEEccCCChHHHHHHhhhhh-----CCCcEEEEccChhhHHHHHHHHHHc-CCCeEEecCCCCHHH---------HHH
Q 001155 410 DVFVLMPTGGGKSLTYQLPALI-----CPGITLVISPLVSLIQDQIMHLLQA-NIPATFLSGNMEWTE---------QQE 474 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~~~~~~---------~~~ 474 (1136)
+++|.||||+|||++|++|++. ..+++||++|+++|+.|+.+.+... +-.+..+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 5899999999999999999983 3578999999999999999999886 656665555432110 000
Q ss_pred HHHHHhcc---cCcceEEEeChhhhhchHHHHHHH----HhhhhhhccceeeeeccccccccCCCCccchhh-hhhhhcc
Q 001155 475 ILRELNSD---YCKYKLLYVTPEKVAKSDVLLRQL----ESLNARELLARIVIDEAHCVSQWGHDFRPDYQG-LGILKQK 546 (1136)
Q Consensus 475 ~l~~l~~~---~~~~~ILV~TPEkL~~~d~l~r~l----~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~-L~~l~~~ 546 (1136)
........ ....+|+|+||+++. ..+...+ ..+.. -..++|||||||++.+++..+ +.. +..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~--~~~~~~~~~~~~~~~~-~~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-- 152 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVL--KSVFGEFGHYEFTLAS-IANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-- 152 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHH--HHHhcccchHHHHHHH-hcCCEEEEeCCCCCCHHHHHH---HHHHHHHHH--
Confidence 11000000 024679999999986 2222211 11111 124789999999998865333 222 22222
Q ss_pred CCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc----CCCCchh----------hhHHHHHHHHH----hcccccch
Q 001155 547 FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS----FNRPNLW----------MDCEKVAERLQ----VGLSYGHF 608 (1136)
Q Consensus 547 ~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s----~~r~nl~----------~~~e~lae~L~----~~l~~~~~ 608 (1136)
..+.+++++|||++..+...............+... ..+.... .....+.+.+. .++.....
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~ 232 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTV 232 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCH
Confidence 246899999999996654333222111111000000 0011110 01111222221 12233344
Q ss_pred hhHHHHHHHHhhcCC--eEEEEcCCCCHHHHHHH----HHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHH
Q 001155 609 FLLKEFYVVSLECGH--KAAFYHGSIDPAQRAFV----QKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 682 (1136)
Q Consensus 609 ~~~~~~~~~l~~~g~--~v~~~Hagm~~~dR~~i----~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~Y 682 (1136)
.....++..+...+. .+..+||+|+..+|..+ ++.|++|..+|||||+++++|||++ +++||++..| +++|
T Consensus 233 ~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~ 309 (358)
T TIGR01587 233 DRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSL 309 (358)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHH
Confidence 455666666666554 59999999999999764 8899999999999999999999995 8899998776 8899
Q ss_pred HHHhcccCCCCCC----cEEEEEecccc
Q 001155 683 HQECGRAGRDGQR----SSCVLYYSYSD 706 (1136)
Q Consensus 683 iQriGRAGR~G~~----g~~il~~~~~D 706 (1136)
+||+||+||.|+. |..++|+...+
T Consensus 310 iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 310 IQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 9999999998863 35666655443
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=8.7e-28 Score=290.09 Aligned_cols=285 Identities=18% Similarity=0.156 Sum_probs=197.4
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh---hC-CCcEEEEccChhhHHHHHHHHHHcC----CCeEEe
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL---IC-PGITLVISPLVSLIQDQIMHLLQAN----IPATFL 463 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL---~~-~g~~LVIsPtraL~~dqv~~L~~~g----I~v~~L 463 (1136)
..|+++|.++++.++.+++.+++||||+|||+++.+.+. .. .+++|||+|+++|+.|+.+.+.+++ ..+..+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 479999999999999999999999999999998654322 22 3489999999999999999998864 233344
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGIL 543 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l 543 (1136)
.++.... ...+|+|+||+++.+ .. . .....+++|||||||++.. ..+ ..+
T Consensus 193 ~~g~~~~-------------~~~~I~VaT~qsl~~--~~-~-----~~~~~~~~iIvDEaH~~~~------~~~---~~i 242 (501)
T PHA02558 193 YSGTAKD-------------TDAPIVVSTWQSAVK--QP-K-----EWFDQFGMVIVDECHLFTG------KSL---TSI 242 (501)
T ss_pred ecCcccC-------------CCCCEEEeeHHHHhh--ch-h-----hhccccCEEEEEchhcccc------hhH---HHH
Confidence 4443211 256899999999852 11 1 1234589999999999853 122 233
Q ss_pred hccCC-CCCEEEEeeccchhhHHH--HHHHhc---------------C-cceEE--ecccCCCC---ch----h-h----
Q 001155 544 KQKFP-NTPVLALTATATASVKED--VVQALG---------------L-VNCII--FRQSFNRP---NL----W-M---- 590 (1136)
Q Consensus 544 ~~~~p-~~~iv~LSAT~~~~v~~d--I~~~L~---------------l-~~~~i--~~~s~~r~---nl----~-~---- 590 (1136)
...++ ..++++||||+....... +...++ . ....+ +...+..+ .+ + .
T Consensus 243 l~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 243 ITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HHhhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 34454 456999999997543211 111111 0 00000 00000000 00 0 0
Q ss_pred ------hHHH---HHHHHH-----hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEee-
Q 001155 591 ------DCEK---VAERLQ-----VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT- 655 (1136)
Q Consensus 591 ------~~e~---lae~L~-----~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT- 655 (1136)
.... ++..+. .++.+..+.+.+.+...+...|..+..+||+|+.++|..+++.|+.|+..|||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 0001 111111 1222334445667777788889999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 656 ~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
+.+++|+|+|++++||++.+++|...|+||+||++|.+..+..+++|+..|
T Consensus 403 ~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 403 GVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred ceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 899999999999999999999999999999999999987666666666555
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=7.5e-27 Score=286.59 Aligned_cols=282 Identities=17% Similarity=0.167 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCChHHHH---------HHhhhhh---------CCCcEEEEccChhhHHHHHHHHHHc-
Q 001155 396 PNQREIINATMSGHDVFVLMPTGGGKSLT---------YQLPALI---------CPGITLVISPLVSLIQDQIMHLLQA- 456 (1136)
Q Consensus 396 piQ~eaI~~il~g~dvLV~APTGsGKTl~---------y~LpaL~---------~~g~~LVIsPtraL~~dqv~~L~~~- 456 (1136)
.+|.++++.+++|+++|++|+||+|||.+ |++|.+. ..+.++|++|+++|+.+....+.+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999987 4433332 1357999999999999878777652
Q ss_pred ------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccC
Q 001155 457 ------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530 (1136)
Q Consensus 457 ------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wG 530 (1136)
|+++....|+........ . ....+|+++|+.... .....+++|||||||..+..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t---~----~k~~~Ilv~T~~L~l------------~~L~~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINT---N----PKPYGLVFSTHKLTL------------NKLFDYGTVIIDEVHEHDQIG 307 (675)
T ss_pred CccccCCceEEEEECCcchHHhhc---c----cCCCCEEEEeCcccc------------cccccCCEEEccccccCccch
Confidence 456777888876211110 0 025689999976321 112348999999999987655
Q ss_pred CCCccchhhhhhhhccCCC-CCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCch------------------hhh
Q 001155 531 HDFRPDYQGLGILKQKFPN-TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNL------------------WMD 591 (1136)
Q Consensus 531 hdfR~~y~~L~~l~~~~p~-~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl------------------~~~ 591 (1136)
| . .+..++...+. .++++||||++..+.. +..+++-.. .+.........+ ...
T Consensus 308 -D----l-lL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~~p~-~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~ 379 (675)
T PHA02653 308 -D----I-IIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFPNPA-FVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEE 379 (675)
T ss_pred -h----H-HHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhcCCc-EEEeCCCcCCCeEEEEeecCcccccchhhhHHH
Confidence 1 1 12223333232 4799999999877643 455554221 111111100000 001
Q ss_pred HHHHHHHHHh---------cccccchhhHHHHHHHHhhc--CCeEEEEcCCCCHHHHHHHHHHH-hcCCceEEEeecccc
Q 001155 592 CEKVAERLQV---------GLSYGHFFLLKEFYVVSLEC--GHKAAFYHGSIDPAQRAFVQKQW-SKDEINIICATVAFG 659 (1136)
Q Consensus 592 ~e~lae~L~~---------~l~~~~~~~~~~~~~~l~~~--g~~v~~~Hagm~~~dR~~i~~~F-~~g~i~VLVAT~alg 659 (1136)
...+...+.. +++.........+...+... ++.+..+||+|++. +++++.| ++|+.+|||||++++
T Consensus 380 k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE 457 (675)
T PHA02653 380 KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE 457 (675)
T ss_pred HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh
Confidence 1112222221 11112223344455555444 68999999999974 4566776 689999999999999
Q ss_pred ccccCCCccEEEEcC---CCC---------CHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 660 MGINKPDVRFVIHHS---LPK---------SIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 660 ~GIDlP~V~~VIh~d---~P~---------Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
+|||+|+|++||+++ .|. |.++|.||+|||||. .+|.|+.||+..+.
T Consensus 458 RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 458 SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999 665 888999999999999 89999999998875
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=8.5e-26 Score=278.77 Aligned_cols=309 Identities=21% Similarity=0.223 Sum_probs=220.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
..+.++.+..+|+ .++++|..++..++.|+ |+.|.||+|||++|.+|++. .+..++||+|++.|+.+....+..
T Consensus 65 A~vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 65 AVVREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred HHHHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHH
Confidence 3566778888897 68999999988888886 99999999999999999984 478899999999999988877765
Q ss_pred c----CCCeEEecCCCC-HHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh---hhhhhccceeeeecccccc
Q 001155 456 A----NIPATFLSGNME-WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES---LNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 456 ~----gI~v~~L~g~~~-~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~---l~~~~~l~lVVIDEAH~ls 527 (1136)
. |++++++.|+.+ ..++... ..++|+|+||..+. .|.+...+.. ......+.++||||||.|+
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~~--------y~~dIvygT~~~l~-fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKAI--------YEADIIYTTNSELG-FDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHHh--------cCCCEEEECCcccc-chhHHhccccchhhhcccccceEEEeccccce
Confidence 4 999999999988 4444322 26899999999983 2555544321 1123458999999999885
Q ss_pred -cc------------------------------CCCCc-------------------------cch----hhh-------
Q 001155 528 -QW------------------------------GHDFR-------------------------PDY----QGL------- 540 (1136)
Q Consensus 528 -~w------------------------------GhdfR-------------------------~~y----~~L------- 540 (1136)
+. +-+|. +.| ..+
T Consensus 213 iDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~A 292 (790)
T PRK09200 213 LDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILA 292 (790)
T ss_pred eccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHH
Confidence 00 00111 000 000
Q ss_pred ----------------------------------------------------------------hhhhccCCCCCEEEEe
Q 001155 541 ----------------------------------------------------------------GILKQKFPNTPVLALT 556 (1136)
Q Consensus 541 ----------------------------------------------------------------~~l~~~~p~~~iv~LS 556 (1136)
..+.+.++ .+.|||
T Consensus 293 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~--kl~GmT 370 (790)
T PRK09200 293 LRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFP--KLSGMT 370 (790)
T ss_pred HHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhH--HHhccC
Confidence 00011111 356777
Q ss_pred eccchhhHHHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh--------cccccchhhHHHHHH
Q 001155 557 ATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV--------GLSYGHFFLLKEFYV 616 (1136)
Q Consensus 557 AT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~--------~l~~~~~~~~~~~~~ 616 (1136)
+|+... ...+.+..++. ++.-+.++|... .....+.+.+.. ++..........+..
T Consensus 371 GTa~t~-~~e~~~~Y~l~---v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~ 446 (790)
T PRK09200 371 GTAKTE-EKEFFEVYNME---VVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSK 446 (790)
T ss_pred CCChHH-HHHHHHHhCCc---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHH
Confidence 777543 23444444443 223344455443 112223333322 233334444566777
Q ss_pred HHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC---CCcc-----EEEEcCCCCCHhHHHHHhcc
Q 001155 617 VSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK---PDVR-----FVIHHSLPKSIEGYHQECGR 688 (1136)
Q Consensus 617 ~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl---P~V~-----~VIh~d~P~Sie~YiQriGR 688 (1136)
.+...|+.+..+||.+...++..+...+..| +|+|||+++|||+|+ |+|. +||+|++|.|...|.||+||
T Consensus 447 ~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GR 524 (790)
T PRK09200 447 LLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGR 524 (790)
T ss_pred HHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhcc
Confidence 7778899999999999999988888888776 799999999999999 7998 99999999999999999999
Q ss_pred cCCCCCCcEEEEEeccccH
Q 001155 689 AGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 689 AGR~G~~g~~il~~~~~D~ 707 (1136)
+||.|.+|.++.|++..|.
T Consensus 525 tGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 525 SGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred ccCCCCCeeEEEEEcchHH
Confidence 9999999999999997764
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5.3e-26 Score=275.41 Aligned_cols=309 Identities=22% Similarity=0.192 Sum_probs=218.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.-+.++.+..+|+. ++++|..+++.++.|+ |+.|.||+|||++|.+|++.. +..++||+|++.|+.+....+..
T Consensus 90 A~~rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 90 ALVREASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred HHHHHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHH
Confidence 34667778888975 5799999999999998 999999999999999999865 67899999999999877776655
Q ss_pred c----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh-------------h---------
Q 001155 456 A----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES-------------L--------- 509 (1136)
Q Consensus 456 ~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~-------------l--------- 509 (1136)
+ |+.++++.|+++...+... -.++|+|+|...+. .|.+...+.. +
T Consensus 167 l~~~lGlsv~~i~gg~~~~~r~~~--------y~~dIvygT~~e~~-FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 237 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPDERRAA--------YGADITYCTNKELV-FDYLRDRLALGQRASDARLALESLHGRSSRSTQ 237 (656)
T ss_pred HHhhcCCEEEEEeCCCCHHHHHHH--------cCCCEEEECCCchh-hhhccccccccccccchhhhhhhhccccCchhh
Confidence 3 8999999999875443322 27899999999884 3555544332 0
Q ss_pred hhhhccceeeeecccccc-c-----------c---------------------CCCCc----------------------
Q 001155 510 NARELLARIVIDEAHCVS-Q-----------W---------------------GHDFR---------------------- 534 (1136)
Q Consensus 510 ~~~~~l~lVVIDEAH~ls-~-----------w---------------------GhdfR---------------------- 534 (1136)
.....+.+.||||||.++ + - +-+|.
T Consensus 238 ~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~ 317 (656)
T PRK12898 238 LLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELA 317 (656)
T ss_pred hcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHh
Confidence 011347889999999874 0 0 00111
Q ss_pred ----cchh----h-------h-----------------------------------------------------------
Q 001155 535 ----PDYQ----G-------L----------------------------------------------------------- 540 (1136)
Q Consensus 535 ----~~y~----~-------L----------------------------------------------------------- 540 (1136)
+.|. . |
T Consensus 318 ~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a 397 (656)
T PRK12898 318 ESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLA 397 (656)
T ss_pred CcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeee
Confidence 0010 0 0
Q ss_pred ----hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh---
Q 001155 541 ----GILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV--- 601 (1136)
Q Consensus 541 ----~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~--- 601 (1136)
..+...++ .+.|||||+... ..++.+.+++.... -+.++|+.. .....+.+.+..
T Consensus 398 ~It~q~~Fr~Y~--kl~GmTGTa~~~-~~El~~~y~l~vv~---IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~ 471 (656)
T PRK12898 398 RITYQRFFRRYL--RLAGMTGTAREV-AGELWSVYGLPVVR---IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHA 471 (656)
T ss_pred eehHHHHHHhhH--HHhcccCcChHH-HHHHHHHHCCCeEE---eCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHh
Confidence 00001111 356899999864 56777777775322 222333321 112223333322
Q ss_pred -----cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC---Ccc-----
Q 001155 602 -----GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP---DVR----- 668 (1136)
Q Consensus 602 -----~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP---~V~----- 668 (1136)
++..........+...+...|+.+..+||.+...++. +..|..+...|+|||+++|||+|++ +|.
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCC
Confidence 2333344456677777888999999999997655544 4455555567999999999999999 776
Q ss_pred EEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 669 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 669 ~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
+||+|++|.|...|+||+||+||.|.+|.++.|++..|.
T Consensus 550 hVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 550 HVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred EEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999999999999998774
No 70
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=4.5e-26 Score=285.57 Aligned_cols=284 Identities=17% Similarity=0.122 Sum_probs=191.4
Q ss_pred HHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH-cCC----CeEEecCCCCHH
Q 001155 399 REIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ-ANI----PATFLSGNMEWT 470 (1136)
Q Consensus 399 ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~-~gI----~v~~L~g~~~~~ 470 (1136)
.+++.++.+++++|++|+||||||.+|.++++.. .+++||+.|++.++.+....+.+ ++. .++........
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~- 86 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK- 86 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc-
Confidence 4556667778899999999999999999998854 56899999999999988888854 333 33332222110
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc-ccccCCCCccchhhhhhhhc-cCC
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC-VSQWGHDFRPDYQGLGILKQ-KFP 548 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~-ls~wGhdfR~~y~~L~~l~~-~~p 548 (1136)
. ...++|+|+||+.|. +.+.. ......+++|||||+|. ..+- ||--.+ +..+.. ..+
T Consensus 87 --------~---s~~t~I~v~T~G~Ll--r~l~~----d~~L~~v~~VIiDEaHER~L~~--Dl~L~l--l~~i~~~lr~ 145 (819)
T TIGR01970 87 --------V---SRRTRLEVVTEGILT--RMIQD----DPELDGVGALIFDEFHERSLDA--DLGLAL--ALDVQSSLRE 145 (819)
T ss_pred --------c---CCCCcEEEECCcHHH--HHHhh----CcccccCCEEEEeccchhhhcc--chHHHH--HHHHHHhcCC
Confidence 0 136789999999986 33322 22345699999999995 3321 121111 122222 235
Q ss_pred CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC--chh-------hh----HHHHHHHHHh-----cccccchhh
Q 001155 549 NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP--NLW-------MD----CEKVAERLQV-----GLSYGHFFL 610 (1136)
Q Consensus 549 ~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~--nl~-------~~----~e~lae~L~~-----~l~~~~~~~ 610 (1136)
+.++++||||++... +..+++-. +.+...+...| ..+ .. ...+...+.. +++......
T Consensus 146 dlqlIlmSATl~~~~---l~~~l~~~-~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 221 (819)
T TIGR01970 146 DLKILAMSATLDGER---LSSLLPDA-PVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAE 221 (819)
T ss_pred CceEEEEeCCCCHHH---HHHHcCCC-cEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 788999999999764 33444311 11111110000 000 00 0111122221 111122223
Q ss_pred HHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC----------
Q 001155 611 LKEFYVVSLE---CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK---------- 677 (1136)
Q Consensus 611 ~~~~~~~l~~---~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~---------- 677 (1136)
+..++..+.. .++.+..+||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++||++++|+
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 4444444443 478899999999999999999999999999999999999999999999999999986
Q ss_pred --------CHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 678 --------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 678 --------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
|-.+|.||.|||||. .+|.|+.+|+..++..
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 234699999999999 8999999999887654
No 71
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.94 E-value=1.1e-25 Score=279.79 Aligned_cols=307 Identities=19% Similarity=0.188 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHCC---CcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhhHHHHHHHHHH-cCCCeEEecC
Q 001155 393 SFRPNQREIINATMSG---HDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSLIQDQIMHLLQ-ANIPATFLSG 465 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g---~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL~~dqv~~L~~-~gI~v~~L~g 465 (1136)
.|++.|.++++.+..+ +++++.||||+|||.+|+.++. ..++.+||++|+++|+.|+++.|.+ +|+.+..++|
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 7899999999999999987653 4477899999999999999999987 4889999999
Q ss_pred CCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch--hhhhhh
Q 001155 466 NMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY--QGLGIL 543 (1136)
Q Consensus 466 ~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y--~~L~~l 543 (1136)
+.+..++...+..+.. +..+|+|+||..+. .....+++|||||+|..+-+..+ .+.| +.+..+
T Consensus 224 ~~s~~~r~~~~~~~~~--g~~~IVVgTrsal~------------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~ 288 (679)
T PRK05580 224 GLSDGERLDEWRKAKR--GEAKVVIGARSALF------------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVV 288 (679)
T ss_pred CCCHHHHHHHHHHHHc--CCCCEEEeccHHhc------------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHH
Confidence 9988877776666544 67899999998762 12345899999999998766543 4544 556666
Q ss_pred hccCCCCCEEEEeeccchhhHHHHHH----HhcC---------cceEEecccC--CCCc---hh-hhHHHHHHHHHh---
Q 001155 544 KQKFPNTPVLALTATATASVKEDVVQ----ALGL---------VNCIIFRQSF--NRPN---LW-MDCEKVAERLQV--- 601 (1136)
Q Consensus 544 ~~~~p~~~iv~LSAT~~~~v~~dI~~----~L~l---------~~~~i~~~s~--~r~n---l~-~~~e~lae~L~~--- 601 (1136)
+....+.+++++|||++......+.. .+.+ ....++.... ...+ +. ...+.+.+.|..
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~q 368 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQ 368 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCe
Confidence 67778999999999988765544321 0001 1111111000 0000 10 111122222221
Q ss_pred -cccccc------------------------------------------------------h------hhHHHHHHHHhh
Q 001155 602 -GLSYGH------------------------------------------------------F------FLLKEFYVVSLE 620 (1136)
Q Consensus 602 -~l~~~~------------------------------------------------------~------~~~~~~~~~l~~ 620 (1136)
++.... . .-...+...+..
T Consensus 369 vll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~ 448 (679)
T PRK05580 369 VLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE 448 (679)
T ss_pred EEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH
Confidence 010000 0 001122222323
Q ss_pred c--CCeEEEEcCCCC--HHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC--CCC----------HhHHHH
Q 001155 621 C--GHKAAFYHGSID--PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL--PKS----------IEGYHQ 684 (1136)
Q Consensus 621 ~--g~~v~~~Hagm~--~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~--P~S----------ie~YiQ 684 (1136)
. +.++..+|+++. ..+++.+++.|.+|+++|||+|+++++|+|+|+|.+|+.++. +-+ ...|+|
T Consensus 449 ~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q 528 (679)
T PRK05580 449 LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQ 528 (679)
T ss_pred hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHH
Confidence 2 678899999987 467999999999999999999999999999999999965544 332 357999
Q ss_pred HhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 685 ECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 685 riGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
++||+||.+..|.+++.+...+-..+..++
T Consensus 529 ~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 529 VAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred HHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 999999999999999887655544444443
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=2.2e-25 Score=282.95 Aligned_cols=295 Identities=20% Similarity=0.242 Sum_probs=200.3
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHc-CC---CeEEe
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQA-NI---PATFL 463 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~-gI---~v~~L 463 (1136)
-++|++|.+++..++.+ |+|+++|||+|||++|++++... ++++|||+|+++|+.|+...+... ++ ++..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 46899999999998887 99999999999999998887643 689999999999999999998875 44 67888
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhh-hhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG-LGI 542 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~-L~~ 542 (1136)
+|+.....+...+ ...+|+|+||+.+.. +.+. .......+++|||||||++... + .|.. +..
T Consensus 93 ~g~~~~~~r~~~~-------~~~~iiv~T~~~l~~-~l~~----~~~~~~~~~liVvDEaH~~~~~---~--~~~~i~~~ 155 (773)
T PRK13766 93 TGEVSPEKRAELW-------EKAKVIVATPQVIEN-DLIA----GRISLEDVSLLIFDEAHRAVGN---Y--AYVYIAER 155 (773)
T ss_pred eCCCCHHHHHHHH-------hCCCEEEECHHHHHH-HHHc----CCCChhhCcEEEEECCcccccc---c--cHHHHHHH
Confidence 8888766544433 267899999998852 2222 2223345899999999997531 1 1222 222
Q ss_pred hhccCCCCCEEEEeeccchhh--HHHHHHHhcCcceEEecccCC--------CC----------c---------------
Q 001155 543 LKQKFPNTPVLALTATATASV--KEDVVQALGLVNCIIFRQSFN--------RP----------N--------------- 587 (1136)
Q Consensus 543 l~~~~p~~~iv~LSAT~~~~v--~~dI~~~L~l~~~~i~~~s~~--------r~----------n--------------- 587 (1136)
+....+...+++||||+.... ...+...|++....+. ..+. ++ +
T Consensus 156 ~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~-~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 156 YHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVR-TEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKD 234 (773)
T ss_pred HHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEc-CCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 334444566999999984331 1222333322211100 0000 00 0
Q ss_pred ----------------------------------------hhhh----------------------------H-------
Q 001155 588 ----------------------------------------LWMD----------------------------C------- 592 (1136)
Q Consensus 588 ----------------------------------------l~~~----------------------------~------- 592 (1136)
.+.. +
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 0000 0
Q ss_pred -----------------------------------HHHHHHHHh----------cccccchhhHHHHHHHHhhcCCeEEE
Q 001155 593 -----------------------------------EKVAERLQV----------GLSYGHFFLLKEFYVVSLECGHKAAF 627 (1136)
Q Consensus 593 -----------------------------------e~lae~L~~----------~l~~~~~~~~~~~~~~l~~~g~~v~~ 627 (1136)
..+.+.|.. +++.........++..+...|+.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 000000000 00000011122334444566788888
Q ss_pred EcCC--------CCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 628 YHGS--------IDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 628 ~Hag--------m~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
+||. |++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|. |.++
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~ 473 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVV 473 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEE
Confidence 8875 999999999999999999999999999999999999999999999999999999999999865 7777
Q ss_pred EEecccc
Q 001155 700 LYYSYSD 706 (1136)
Q Consensus 700 l~~~~~D 706 (1136)
+++....
T Consensus 474 ~l~~~~t 480 (773)
T PRK13766 474 VLIAKGT 480 (773)
T ss_pred EEEeCCC
Confidence 7776544
No 73
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=4.6e-26 Score=286.01 Aligned_cols=285 Identities=19% Similarity=0.156 Sum_probs=191.3
Q ss_pred HHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH-c----CCCeEEecCCCCHH
Q 001155 399 REIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ-A----NIPATFLSGNMEWT 470 (1136)
Q Consensus 399 ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~-~----gI~v~~L~g~~~~~ 470 (1136)
.+++.++.+++++++.||||||||.+|.++++.. .+++||+.|++.++.+....+.. + |..++...+.....
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~ 90 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV 90 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc
Confidence 3556667788999999999999999999998854 46899999999999988888754 3 34444444332211
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhc-cCCC
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQ-KFPN 549 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~-~~p~ 549 (1136)
. ...+|+|+||++|. +.+.. ......+++|||||+|..+- ..|+.-.+ +..+.. ..++
T Consensus 91 ~------------~~t~I~v~T~G~Ll--r~l~~----d~~L~~v~~IIlDEaHER~l-~~Dl~L~l--l~~i~~~lr~~ 149 (812)
T PRK11664 91 G------------PNTRLEVVTEGILT--RMIQR----DPELSGVGLVILDEFHERSL-QADLALAL--LLDVQQGLRDD 149 (812)
T ss_pred C------------CCCcEEEEChhHHH--HHHhh----CCCcCcCcEEEEcCCCcccc-ccchHHHH--HHHHHHhCCcc
Confidence 0 25689999999985 33322 22346699999999997310 01111111 112222 2357
Q ss_pred CCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-ch-h------hhH-----HHHHHHHHh-----cccccchhhH
Q 001155 550 TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-NL-W------MDC-----EKVAERLQV-----GLSYGHFFLL 611 (1136)
Q Consensus 550 ~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-nl-~------~~~-----e~lae~L~~-----~l~~~~~~~~ 611 (1136)
.++++||||++... +..+++-. +.+...+...| .. + ... ..+...+.. +++......+
T Consensus 150 lqlilmSATl~~~~---l~~~~~~~-~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei 225 (812)
T PRK11664 150 LKLLIMSATLDNDR---LQQLLPDA-PVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEI 225 (812)
T ss_pred ceEEEEecCCCHHH---HHHhcCCC-CEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHH
Confidence 88999999998753 33444311 11111111001 00 0 001 112222221 1112222234
Q ss_pred HHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCC----------
Q 001155 612 KEFYVVSLE---CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS---------- 678 (1136)
Q Consensus 612 ~~~~~~l~~---~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~S---------- 678 (1136)
..+...+.. .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++++.
T Consensus 226 ~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~ 305 (812)
T PRK11664 226 QRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLT 305 (812)
T ss_pred HHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcc
Confidence 444444443 4788999999999999999999999999999999999999999999999999888763
Q ss_pred --------HhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 679 --------IEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 679 --------ie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
-++|.||.|||||. .+|.|+.+|+..++..
T Consensus 306 ~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 306 RLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred eeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 35899999999998 6999999999887643
No 74
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=5.6e-26 Score=273.06 Aligned_cols=159 Identities=24% Similarity=0.363 Sum_probs=113.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHcCCC--eEE
Q 001155 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQANIP--ATF 462 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~gI~--v~~ 462 (1136)
+.-.||.+|.+++..+| |+|+||++|||+|||.++...++.+ .+++|+.+|++-|+.||...+...+++ +..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 44579999999999999 9999999999999999988888744 789999999999999999888888765 333
Q ss_pred ecCC-CCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhh
Q 001155 463 LSGN-MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541 (1136)
Q Consensus 463 L~g~-~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~ 541 (1136)
..|+ .....+..++ ...+|+|+||..+. +.+....... +..+.++||||||+-.. .|.|-..++.+.
T Consensus 138 ~l~~~~~~~~r~~i~-------~s~~vff~TpQil~--ndL~~~~~~~--ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIV-------ASKRVFFRTPQILE--NDLKSGLHDE--LSDFSLIVFDECHRTSK-NHPYNNIMREYL 205 (746)
T ss_pred eccCccCCCchhhhh-------cccceEEeChHhhh--hhcccccccc--cceEEEEEEcccccccc-cccHHHHHHHHH
Confidence 3344 4444444333 36899999999986 3333322222 45689999999999642 122222222222
Q ss_pred hhhccCCCCCEEEEeeccchhh
Q 001155 542 ILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 542 ~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
.+.. ...+++|||||+....
T Consensus 206 ~~k~--~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 206 DLKN--QGNQILGLTASPGSKL 225 (746)
T ss_pred Hhhh--ccccEEEEecCCCccH
Confidence 2222 2339999999988654
No 75
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=9.3e-27 Score=244.53 Aligned_cols=300 Identities=20% Similarity=0.236 Sum_probs=214.0
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCC----C--cEEEEccChhhH
Q 001155 373 WDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICP----G--ITLVISPLVSLI 446 (1136)
Q Consensus 373 ~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~----g--~~LVIsPtraL~ 446 (1136)
.+|-+.+++..++-.. ||..+...|.++||.+.-|-|++..|..|.|||.+|.|..|+.. | .+||++.||+|+
T Consensus 45 rdfllkpellraivdc-gfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrela 123 (387)
T KOG0329|consen 45 RDFLLKPELLRAIVDC-GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELA 123 (387)
T ss_pred hhhhcCHHHHHHHHhc-cCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHH
Confidence 3677778888888776 99999999999999999999999999999999999999998762 2 478999999999
Q ss_pred HHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeee
Q 001155 447 QDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVID 521 (1136)
Q Consensus 447 ~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVID 521 (1136)
-|+-.++.++ ++++.++.|++......+.+.. -++|+|+||+++. .+...+..++ ..++.+|+|
T Consensus 124 fqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~------~PhivVgTPGril--ALvr~k~l~l---k~vkhFvlD 192 (387)
T KOG0329|consen 124 FQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN------CPHIVVGTPGRIL--ALVRNRSLNL---KNVKHFVLD 192 (387)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC------CCeEEEcCcHHHH--HHHHhccCch---hhcceeehh
Confidence 9877666554 7899999999998877777664 7899999999995 4444443333 348999999
Q ss_pred ccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhhHHHHHHHHHh
Q 001155 522 EAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQV 601 (1136)
Q Consensus 522 EAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~~e~lae~L~~ 601 (1136)
||+.+++|- |.|.++..+ ++......+++.+|||++..++.-..+++.- +..+|......-.+ .-|++
T Consensus 193 Ecdkmle~l-DMrRDvQEi--fr~tp~~KQvmmfsatlskeiRpvC~kFmQd-PmEi~vDdE~KLtL--------HGLqQ 260 (387)
T KOG0329|consen 193 ECDKMLEQL-DMRRDVQEI--FRMTPHEKQVMMFSATLSKEIRPVCHKFMQD-PMEIFVDDEAKLTL--------HGLQQ 260 (387)
T ss_pred hHHHHHHHH-HHHHHHHHH--hhcCcccceeeeeeeecchhhHHHHHhhhcC-chhhhccchhhhhh--------hhHHH
Confidence 999998763 456565544 4455557889999999999877655444432 22233222111111 11111
Q ss_pred cc----cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC
Q 001155 602 GL----SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 677 (1136)
Q Consensus 602 ~l----~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~ 677 (1136)
.. .......+..+...+.-. .+.++-- ...|-. | +.+ +|||+.||+|+|+..+..||+||+|.
T Consensus 261 ~YvkLke~eKNrkl~dLLd~LeFN--QVvIFvK---sv~Rl~----f---~kr-~vat~lfgrgmdiervNi~~NYdmp~ 327 (387)
T KOG0329|consen 261 YYVKLKENEKNRKLNDLLDVLEFN--QVVIFVK---SVQRLS----F---QKR-LVATDLFGRGMDIERVNIVFNYDMPE 327 (387)
T ss_pred HHHhhhhhhhhhhhhhhhhhhhhc--ceeEeee---hhhhhh----h---hhh-hHHhhhhccccCcccceeeeccCCCC
Confidence 00 000011111111111111 2333322 223311 4 334 99999999999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 678 SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 678 Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
+...|+||+|||||.|.+|.+|.|.+......
T Consensus 328 ~~DtYlHrv~rAgrfGtkglaitfvs~e~da~ 359 (387)
T KOG0329|consen 328 DSDTYLHRVARAGRFGTKGLAITFVSDENDAK 359 (387)
T ss_pred CchHHHHHhhhhhccccccceeehhcchhhHH
Confidence 99999999999999999999999987655443
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3e-25 Score=271.66 Aligned_cols=299 Identities=18% Similarity=0.220 Sum_probs=192.9
Q ss_pred CCCCHHHHHHHHHHHC-C--CcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc-C---CCeEEec
Q 001155 392 HSFRPNQREIINATMS-G--HDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA-N---IPATFLS 464 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~-g--~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~-g---I~v~~L~ 464 (1136)
..+||+|.+++..++. | +..++++|||+|||++.+..+.....++|||+|+..|+.||.+++.+. . ..+..++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~t 333 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFT 333 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 4689999999999884 4 478999999999999998777777889999999999999999999886 2 3445555
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhch----HHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS----DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~----d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
|+..... .+...|+|+|+..+... ......+..+ ....+++||+||||++.. +.|++
T Consensus 334 g~~k~~~-----------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l-~~~~~gLII~DEvH~lpA------~~fr~- 394 (732)
T TIGR00603 334 SDAKERF-----------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWL-TNREWGLILLDEVHVVPA------AMFRR- 394 (732)
T ss_pred cCccccc-----------ccCCcEEEEEHHHhhcccccchhhhHHHHHh-ccccCCEEEEEccccccH------HHHHH-
Confidence 5422110 12467999999988521 0011111111 113478999999999842 22332
Q ss_pred hhhhccCCCCCEEEEeeccchhhH--HHHHHHhcCcceEEecc--------cCCCC------------chh---------
Q 001155 541 GILKQKFPNTPVLALTATATASVK--EDVVQALGLVNCIIFRQ--------SFNRP------------NLW--------- 589 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~--~dI~~~L~l~~~~i~~~--------s~~r~------------nl~--------- 589 (1136)
+...+.....++||||+..... .++...+| +.++.. ++--+ ..+
T Consensus 395 --il~~l~a~~RLGLTATP~ReD~~~~~L~~LiG---P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~ 469 (732)
T TIGR00603 395 --VLTIVQAHCKLGLTATLVREDDKITDLNFLIG---PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSR 469 (732)
T ss_pred --HHHhcCcCcEEEEeecCcccCCchhhhhhhcC---CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcch
Confidence 3333445678999999975432 12222221 111110 00000 000
Q ss_pred -------------hhHHHHHHHHH----hcccc-cchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-Cce
Q 001155 590 -------------MDCEKVAERLQ----VGLSY-GHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD-EIN 650 (1136)
Q Consensus 590 -------------~~~e~lae~L~----~~l~~-~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~ 650 (1136)
..|+.+..... ..+.+ .....+..+.. .. .+.++||+++..+|..+++.|+.| .++
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~---~L--~~~~I~G~ts~~ER~~il~~Fr~~~~i~ 544 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAI---KL--GKPFIYGPTSQQERMQILQNFQHNPKVN 544 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHH---Hc--CCceEECCCCHHHHHHHHHHHHhCCCcc
Confidence 01111111110 01111 11112222222 22 356789999999999999999875 889
Q ss_pred EEEeeccccccccCCCccEEEEcCCC-CCHhHHHHHhcccCCCCCCcEE-------EEEeccccHH------HHHHHHhc
Q 001155 651 IICATVAFGMGINKPDVRFVIHHSLP-KSIEGYHQECGRAGRDGQRSSC-------VLYYSYSDFI------RVKHMISQ 716 (1136)
Q Consensus 651 VLVAT~alg~GIDlP~V~~VIh~d~P-~Sie~YiQriGRAGR~G~~g~~-------il~~~~~D~~------~~~~li~~ 716 (1136)
+||+|.++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.|++....+ +.+.|++|
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 99999999999999999999999998 5999999999999999876554 5555544332 34566777
Q ss_pred CcC
Q 001155 717 GVA 719 (1136)
Q Consensus 717 ~~~ 719 (1136)
+..
T Consensus 625 GY~ 627 (732)
T TIGR00603 625 GYS 627 (732)
T ss_pred CCe
Confidence 654
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=6.5e-25 Score=268.71 Aligned_cols=307 Identities=18% Similarity=0.229 Sum_probs=208.5
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH-
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ- 455 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~- 455 (1136)
.+.++.+..+|+ +|+|.+++..+..++..++.|+||+|||++|.+|++.. +..++||+|++.|+.++...+..
T Consensus 58 ~vrEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l 134 (762)
T TIGR03714 58 VVREADKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPV 134 (762)
T ss_pred HHHHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHH
Confidence 456666777775 66666677666655557999999999999999998753 66799999999999988887744
Q ss_pred ---cCCCeEEecCCC-----CHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhh---hhhhccceeeeeccc
Q 001155 456 ---ANIPATFLSGNM-----EWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL---NARELLARIVIDEAH 524 (1136)
Q Consensus 456 ---~gI~v~~L~g~~-----~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l---~~~~~l~lVVIDEAH 524 (1136)
+|+.+..+.++. ....+... ..++|+|+||+++.- |.+...+... .....+.++||||||
T Consensus 135 ~~~LGLsv~~~~~~s~~~~~~~~~rr~~--------y~~dIvygTp~~Lgf-DyLrD~l~~~~~~~~~r~l~~~IVDEaD 205 (762)
T TIGR03714 135 YEWLGLTVSLGVVDDPDEEYDANEKRKI--------YNSDIVYTTNSALGF-DYLIDNLASNKEGKFLRPFNYVIVDEVD 205 (762)
T ss_pred HhhcCCcEEEEECCCCccccCHHHHHHh--------CCCCEEEECchhhhh-hHHHHHhhcchhhcccccCcEEEEecHh
Confidence 489988776542 21111111 378999999999942 5554443221 123458899999999
Q ss_pred ccccc-------------------------------CCCCc-------------------------cch----hh-----
Q 001155 525 CVSQW-------------------------------GHDFR-------------------------PDY----QG----- 539 (1136)
Q Consensus 525 ~ls~w-------------------------------GhdfR-------------------------~~y----~~----- 539 (1136)
.|+-- +-||. ..| ..
T Consensus 206 sILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i 285 (762)
T TIGR03714 206 SVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHI 285 (762)
T ss_pred hHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHH
Confidence 98510 00110 000 00
Q ss_pred ---h---------------------------------------------------------------hhhhccCCCCCEE
Q 001155 540 ---L---------------------------------------------------------------GILKQKFPNTPVL 553 (1136)
Q Consensus 540 ---L---------------------------------------------------------------~~l~~~~p~~~iv 553 (1136)
| ..+...+ .++.
T Consensus 286 ~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y--~kl~ 363 (762)
T TIGR03714 286 NLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMF--NKLS 363 (762)
T ss_pred HHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhC--chhc
Confidence 0 0011111 1456
Q ss_pred EEeeccchhhHHHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh--------cccccchhhHHH
Q 001155 554 ALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV--------GLSYGHFFLLKE 613 (1136)
Q Consensus 554 ~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~--------~l~~~~~~~~~~ 613 (1136)
|||+|+... ...+.+..++. ++.-+.++|... .....+.+.+.. ++..........
T Consensus 364 GmTGTa~~~-~~Ef~~iY~l~---v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ 439 (762)
T TIGR03714 364 GMTGTGKVA-EKEFIETYSLS---VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEI 439 (762)
T ss_pred ccCCCChhH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHH
Confidence 788887543 33444544443 233344444433 112223333322 223333344556
Q ss_pred HHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC---------CccEEEEcCCCCCHhHHHH
Q 001155 614 FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP---------DVRFVIHHSLPKSIEGYHQ 684 (1136)
Q Consensus 614 ~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP---------~V~~VIh~d~P~Sie~YiQ 684 (1136)
+...+...|+.+..+||.+...+|..+...|..| .|+|||+++|||+|++ ++.+||+|++|....+ .|
T Consensus 440 ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~q 516 (762)
T TIGR03714 440 YSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQ 516 (762)
T ss_pred HHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HH
Confidence 6677778899999999999999998888877777 7999999999999999 9999999999988777 99
Q ss_pred HhcccCCCCCCcEEEEEeccccH
Q 001155 685 ECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 685 riGRAGR~G~~g~~il~~~~~D~ 707 (1136)
|+||+||.|.+|.++.|++..|.
T Consensus 517 r~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 517 LRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred hhhcccCCCCceeEEEEEccchh
Confidence 99999999999999999998774
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=4e-25 Score=285.90 Aligned_cols=280 Identities=18% Similarity=0.239 Sum_probs=188.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLL 454 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~ 454 (1136)
.++...+++..|+ .|+++|..+++.++.|+|++++||||+|||+ |.+|+.. .+.++|||+||++|+.|+...+.
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 4455556665565 6999999999999999999999999999997 5555542 26789999999999999988887
Q ss_pred Hc----CCCe---EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 455 QA----NIPA---TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 455 ~~----gI~v---~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
.+ ++.+ ..++|+.+..++...+..+.. +.++|||+||++|. +.+. .+.. .+++|||||||+++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~~dIlV~Tp~rL~--~~~~----~l~~--~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN--GDFDILITTTMFLS--KNYD----ELGP--KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHH--HHHH----HhcC--CCCEEEEeChHhhh
Confidence 75 4443 346788888776666555543 56999999999985 3222 2221 58999999999999
Q ss_pred ccCC---------CCccc-hhhh-------------------hhhhccCC-CCC--EEEEeecc-chhhHHHHHH-HhcC
Q 001155 528 QWGH---------DFRPD-YQGL-------------------GILKQKFP-NTP--VLALTATA-TASVKEDVVQ-ALGL 573 (1136)
Q Consensus 528 ~wGh---------dfR~~-y~~L-------------------~~l~~~~p-~~~--iv~LSAT~-~~~v~~dI~~-~L~l 573 (1136)
+|+. +|.++ ...+ ..+....| ..+ ++++|||+ +..+...+.. .+++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~ 292 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGF 292 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccce
Confidence 8542 36654 2211 11112223 333 46789994 5444332221 1111
Q ss_pred cceEEecccCCCCchh-------hhHHHHHHHHHh----cccccc-h---hhHHHHHHHHhhcCCeEEEEcCCCCHHHHH
Q 001155 574 VNCIIFRQSFNRPNLW-------MDCEKVAERLQV----GLSYGH-F---FLLKEFYVVSLECGHKAAFYHGSIDPAQRA 638 (1136)
Q Consensus 574 ~~~~i~~~s~~r~nl~-------~~~e~lae~L~~----~l~~~~-~---~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~ 638 (1136)
. +-.......++. ...+.+.+.+.. .+.+.. . ....++...+...|+.+..+||+|+ .
T Consensus 293 ~---v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~ 365 (1171)
T TIGR01054 293 E---VGGGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----K 365 (1171)
T ss_pred E---ecCccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----H
Confidence 0 000000111110 002234444443 222222 2 3456677777788999999999997 3
Q ss_pred HHHHHHhcCCceEEEee----ccccccccCCC-ccEEEEcCCCC
Q 001155 639 FVQKQWSKDEINIICAT----VAFGMGINKPD-VRFVIHHSLPK 677 (1136)
Q Consensus 639 ~i~~~F~~g~i~VLVAT----~alg~GIDlP~-V~~VIh~d~P~ 677 (1136)
.+++.|++|+++||||| ++++||||+|+ |++|||||+|+
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999995 89999999999 89999999997
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=5.6e-24 Score=259.08 Aligned_cols=308 Identities=19% Similarity=0.158 Sum_probs=218.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.+.++.+..+|+. ++++|..+...++.|+ |+.|+||+|||++|.+|++. .+..++||+|+..|+.+....+..+
T Consensus 44 ~vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 44 VVREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred HHHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 4567777888864 6888888888777776 99999999999999999963 3667999999999999887777654
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH---hhhhhhccceeeeeccccccc-
Q 001155 457 ----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE---SLNARELLARIVIDEAHCVSQ- 528 (1136)
Q Consensus 457 ----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~---~l~~~~~l~lVVIDEAH~ls~- 528 (1136)
|+++.++.|+++...+...+ .++|+|+||.+|. .|.+...+. .......+.++||||+|.++-
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlg-fDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LID 191 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELG-FDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILID 191 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchh-hHHHhcccccchhhhhccccceeEeecHHHHhHH
Confidence 89999999998876554432 5799999999983 166655421 112335689999999998851
Q ss_pred --------cC----------------------CCCc-------------------------cchhh--------h-----
Q 001155 529 --------WG----------------------HDFR-------------------------PDYQG--------L----- 540 (1136)
Q Consensus 529 --------wG----------------------hdfR-------------------------~~y~~--------L----- 540 (1136)
-| -+|. ..|.. +
T Consensus 192 eaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~ 271 (745)
T TIGR00963 192 EARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALK 271 (745)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHH
Confidence 01 0111 00000 0
Q ss_pred --------------------------------------------------------------hhhhccCCCCCEEEEeec
Q 001155 541 --------------------------------------------------------------GILKQKFPNTPVLALTAT 558 (1136)
Q Consensus 541 --------------------------------------------------------------~~l~~~~p~~~iv~LSAT 558 (1136)
..+.+.++ .+.|||+|
T Consensus 272 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~--kl~GmTGT 349 (745)
T TIGR00963 272 AKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYE--KLSGMTGT 349 (745)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCc--hhhccCCC
Confidence 00111111 35677888
Q ss_pred cchhhHHHHHHHhcCcceEEecccCCCCchh--------h----hHHHHHHHHHh--------cccccchhhHHHHHHHH
Q 001155 559 ATASVKEDVVQALGLVNCIIFRQSFNRPNLW--------M----DCEKVAERLQV--------GLSYGHFFLLKEFYVVS 618 (1136)
Q Consensus 559 ~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~--------~----~~e~lae~L~~--------~l~~~~~~~~~~~~~~l 618 (1136)
+... ...+.+..++.- +.-+.++|... . ....+.+.+.. ++.+........+...+
T Consensus 350 a~te-~~E~~~iY~l~v---v~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L 425 (745)
T TIGR00963 350 AKTE-EEEFEKIYNLEV---VVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLL 425 (745)
T ss_pred cHHH-HHHHHHHhCCCE---EEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHH
Confidence 7643 334455545442 22333344332 1 11222222211 23333444556677777
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC-------ccEEEEcCCCCCHhHHHHHhcccCC
Q 001155 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD-------VRFVIHHSLPKSIEGYHQECGRAGR 691 (1136)
Q Consensus 619 ~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~-------V~~VIh~d~P~Sie~YiQriGRAGR 691 (1136)
...|+....+||+ ..+|+..+..|+.+...|+|||+++|||+|++. ..+||+++.|.|...|.|++||+||
T Consensus 426 ~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGR 503 (745)
T TIGR00963 426 KERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGR 503 (745)
T ss_pred HHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccC
Confidence 8889999999999 789999999999999999999999999999999 5599999999999999999999999
Q ss_pred CCCCcEEEEEeccccH
Q 001155 692 DGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 692 ~G~~g~~il~~~~~D~ 707 (1136)
.|.+|.+..|.+..|.
T Consensus 504 qG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 504 QGDPGSSRFFLSLEDN 519 (745)
T ss_pred CCCCcceEEEEeccHH
Confidence 9999999999998874
No 80
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=9.6e-25 Score=260.90 Aligned_cols=308 Identities=21% Similarity=0.277 Sum_probs=212.4
Q ss_pred hhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.|+| .+-.+|++||-++..|..++|.|+|.+|||+++..++.+ +..++||-+|.++|-+|-++.|+..--.+..++
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlT 371 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLT 371 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceee
Confidence 3455 478999999999999999999999999999998776653 367999999999999999999999866777999
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc--cCCCCccchhhhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ--WGHDFRPDYQGLGI 542 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~--wGhdfR~~y~~L~~ 542 (1136)
|+.... ....++|+|.|.|- .++.+...- ...+.+||+||+|-+.+ .|+-+. ..
T Consensus 372 GDvqin-------------PeAsCLIMTTEILR--sMLYrgadl---iRDvE~VIFDEVHYiND~eRGvVWE------EV 427 (1248)
T KOG0947|consen 372 GDVQIN-------------PEASCLIMTTEILR--SMLYRGADL---IRDVEFVIFDEVHYINDVERGVVWE------EV 427 (1248)
T ss_pred cceeeC-------------CCcceEeehHHHHH--HHHhcccch---hhccceEEEeeeeecccccccccce------ee
Confidence 997653 36789999999984 344433322 23489999999999975 333221 11
Q ss_pred hhccCCCCCEEEEeeccchhhHHHHHHHhcCcc-e-EEecccCCCCchh-------------------------------
Q 001155 543 LKQKFPNTPVLALTATATASVKEDVVQALGLVN-C-IIFRQSFNRPNLW------------------------------- 589 (1136)
Q Consensus 543 l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~-~-~i~~~s~~r~nl~------------------------------- 589 (1136)
+....+.+.+|+||||.|+.. ....|+|-.. . +.+.....||...
T Consensus 428 iIMlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~ 505 (1248)
T KOG0947|consen 428 IIMLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDS 505 (1248)
T ss_pred eeeccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhh
Confidence 333344788999999999973 4555554211 1 1111111222111
Q ss_pred ------------------------------------------------------------------------hhHHHHHH
Q 001155 590 ------------------------------------------------------------------------MDCEKVAE 597 (1136)
Q Consensus 590 ------------------------------------------------------------------------~~~e~lae 597 (1136)
..|++-++
T Consensus 506 ~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~ 585 (1248)
T KOG0947|consen 506 LKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYAD 585 (1248)
T ss_pred hcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHH
Confidence 23444444
Q ss_pred HHHhcccccc--hhhH----HH----------------HHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEee
Q 001155 598 RLQVGLSYGH--FFLL----KE----------------FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655 (1136)
Q Consensus 598 ~L~~~l~~~~--~~~~----~~----------------~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT 655 (1136)
.|...--... ...+ .. ....++.+ ++++||||+-+--++-|+..|..|-++||+||
T Consensus 586 ~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~R--GiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 586 YLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLR--GIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred HHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhh--cchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 4332110000 0000 00 00111223 48899999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEcCCCC---------CHhHHHHHhcccCCCCC--CcEEEEEecc--ccHHHHHHHHhcCc-CCC
Q 001155 656 VAFGMGINKPDVRFVIHHSLPK---------SIEGYHQECGRAGRDGQ--RSSCVLYYSY--SDFIRVKHMISQGV-AEQ 721 (1136)
Q Consensus 656 ~alg~GIDlP~V~~VIh~d~P~---------Sie~YiQriGRAGR~G~--~g~~il~~~~--~D~~~~~~li~~~~-~~e 721 (1136)
.+|+||||.|+-.+|+. .+-+ .+-+|+||.|||||.|. .|..|++... .+...++++|-.+. .-+
T Consensus 664 ETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~ 742 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLE 742 (1248)
T ss_pred hhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhh
Confidence 99999999998777662 2222 67899999999999996 6888877754 46777888775432 234
Q ss_pred CCCC
Q 001155 722 SPFT 725 (1136)
Q Consensus 722 s~~~ 725 (1136)
||+.
T Consensus 743 SQFR 746 (1248)
T KOG0947|consen 743 SQFR 746 (1248)
T ss_pred hhhh
Confidence 4443
No 81
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.4e-24 Score=259.25 Aligned_cols=287 Identities=17% Similarity=0.203 Sum_probs=195.4
Q ss_pred EEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHc-CCCeEEecCCCCHHHHHHHHHHHhcccCcce
Q 001155 412 FVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQA-NIPATFLSGNMEWTEQQEILRELNSDYCKYK 487 (1136)
Q Consensus 412 LV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ 487 (1136)
|+.+|||+|||.+|+..+ +..++.+||++|+++|+.|++..|.+. +..+..++|+.+..++...+..+.. +..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEIL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCC
Confidence 578999999999997544 345778999999999999999999864 8889999999988877777766654 6789
Q ss_pred EEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch--hhhhhhhccCCCCCEEEEeeccchhhHH
Q 001155 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY--QGLGILKQKFPNTPVLALTATATASVKE 565 (1136)
Q Consensus 488 ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y--~~L~~l~~~~p~~~iv~LSAT~~~~v~~ 565 (1136)
|+|+|+..+. .....+++|||||+|..+-|+.++ +.| +.+..++....+.+++++|||++.....
T Consensus 79 IVVGTrsalf------------~p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 79 VVIGTRSALF------------LPFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred EEECChHHHc------------CcccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 9999998662 123458999999999998777654 555 4566777888899999999998866544
Q ss_pred HHHH-Hhc---C-------cceEEecccCCCCc----hh-hhHHHHHHHHHh---cccc-cc--------------h---
Q 001155 566 DVVQ-ALG---L-------VNCIIFRQSFNRPN----LW-MDCEKVAERLQV---GLSY-GH--------------F--- 608 (1136)
Q Consensus 566 dI~~-~L~---l-------~~~~i~~~s~~r~n----l~-~~~e~lae~L~~---~l~~-~~--------------~--- 608 (1136)
.+.. .+. + ..+.+......... +. ...+.+.+.+.. .+.+ +. .
T Consensus 146 ~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C 225 (505)
T TIGR00595 146 NAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCC 225 (505)
T ss_pred HHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCC
Confidence 3321 000 0 00111000011100 00 111222233322 1100 00 0
Q ss_pred --------h-----------------------------------hHHHHHHHHhhc--CCeEEEEcCCCCHHHH--HHHH
Q 001155 609 --------F-----------------------------------LLKEFYVVSLEC--GHKAAFYHGSIDPAQR--AFVQ 641 (1136)
Q Consensus 609 --------~-----------------------------------~~~~~~~~l~~~--g~~v~~~Hagm~~~dR--~~i~ 641 (1136)
+ -...+...+... +.++..+|++++...+ +.++
T Consensus 226 ~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l 305 (505)
T TIGR00595 226 PNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALL 305 (505)
T ss_pred CCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHH
Confidence 0 012222333332 6789999999987766 8999
Q ss_pred HHHhcCCceEEEeeccccccccCCCccEEE--EcCC----CC------CHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 642 KQWSKDEINIICATVAFGMGINKPDVRFVI--HHSL----PK------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 642 ~~F~~g~i~VLVAT~alg~GIDlP~V~~VI--h~d~----P~------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
+.|.+|+++|||+|.+++.|+|+|+|+.|+ ++|. |. ....|+|++|||||.+..|.+++.+...+-..
T Consensus 306 ~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~ 385 (505)
T TIGR00595 306 NQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPA 385 (505)
T ss_pred HHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHH
Confidence 999999999999999999999999999886 5553 21 24678999999999999999987654444333
Q ss_pred HHHH
Q 001155 710 VKHM 713 (1136)
Q Consensus 710 ~~~l 713 (1136)
+..+
T Consensus 386 ~~~~ 389 (505)
T TIGR00595 386 IQAA 389 (505)
T ss_pred HHHH
Confidence 3333
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=5.5e-23 Score=244.27 Aligned_cols=309 Identities=23% Similarity=0.286 Sum_probs=227.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC------CcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhh
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSG------HDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSL 445 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g------~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL 445 (1136)
+++...+.+.+.+.+.| +||.-|++++..+... .+=|+.+--|||||+++++.++. .+..+...+||--|
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEIL 323 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEIL 323 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHH
Confidence 44455666666666677 4899999999999753 25789999999999999888774 47899999999999
Q ss_pred HHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeee
Q 001155 446 IQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVID 521 (1136)
Q Consensus 446 ~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVID 521 (1136)
+.|.+..+.+. |+++..++|.+....+..++..+.+ |..+|+|+|-.-+.. --.+.++.+||||
T Consensus 324 A~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~--G~~~ivVGTHALiQd----------~V~F~~LgLVIiD 391 (677)
T COG1200 324 AEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLAS--GEIDIVVGTHALIQD----------KVEFHNLGLVIID 391 (677)
T ss_pred HHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhC--CCCCEEEEcchhhhc----------ceeecceeEEEEe
Confidence 99999888765 8999999999999999999988887 889999999876631 1234558999999
Q ss_pred ccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh------hhHHH
Q 001155 522 EAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------MDCEK 594 (1136)
Q Consensus 522 EAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------~~~e~ 594 (1136)
|=|+. |- .+=..++..-. .+.++.||||+-+.... +.-+-.+.-..+-.-+..|..+. ....+
T Consensus 392 EQHRF---GV------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA-lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~ 461 (677)
T COG1200 392 EQHRF---GV------HQRLALREKGEQNPHVLVMTATPIPRTLA-LTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE 461 (677)
T ss_pred ccccc---cH------HHHHHHHHhCCCCCcEEEEeCCCchHHHH-HHHhccccchhhccCCCCCCceEEEEeccccHHH
Confidence 99994 31 11123444444 56799999999887543 11122222222222333333332 12233
Q ss_pred HHHHHHhcccccc-------------h---hhHHHHHHHHh--hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeec
Q 001155 595 VAERLQVGLSYGH-------------F---FLLKEFYVVSL--ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV 656 (1136)
Q Consensus 595 lae~L~~~l~~~~-------------~---~~~~~~~~~l~--~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~ 656 (1136)
+.+++...+..++ . ....+.+..+. -.+++++.+||.|+.++++.+++.|++|+++|||||.
T Consensus 462 v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT 541 (677)
T COG1200 462 VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT 541 (677)
T ss_pred HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 3333332111110 0 01122222222 2357799999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 657 AFGMGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 657 alg~GIDlP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
+.+.|||+|+..++|..+.-. .+...-|-.||.||.+..+.|+++|.+..
T Consensus 542 VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 542 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999998766 88999999999999999999999998765
No 83
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=253.57 Aligned_cols=320 Identities=21% Similarity=0.296 Sum_probs=225.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHH--HHHHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREII--NATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMH 452 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI--~~il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~ 452 (1136)
+.+.+...+.+|...+..+|.+++ +.++.++|+|..+||++|||+++-+-++. +...++.|.|..+.+++-+..
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhh
Confidence 444555556669999999999998 56788999999999999999999887764 377899999999999998888
Q ss_pred HHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 453 LLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 453 L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
+..+ |+++....|........ ....|.|+|-|+- ..+...+..-.....+++|||||.|.+.+
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~~~----------k~~sv~i~tiEka---nslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEKRR----------KRESVAIATIEKA---NSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCCcc----------cceeeeeeehHhh---HhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 8776 77777777665544332 2567999999998 34444444444455689999999999987
Q ss_pred cCCCCccchhh--hhhhhccC--CCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh---------------
Q 001155 529 WGHDFRPDYQG--LGILKQKF--PNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW--------------- 589 (1136)
Q Consensus 529 wGhdfR~~y~~--L~~l~~~~--p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~--------------- 589 (1136)
-|.+ .... |..+.-.. ..+++|++|||+++. .++..+|. ..++...|.+..+.
T Consensus 356 ~~rg---~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~---A~~y~t~fRPv~L~E~ik~G~~i~~~~r~ 427 (1008)
T KOG0950|consen 356 KGRG---AILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLD---AFVYTTRFRPVPLKEYIKPGSLIYESSRN 427 (1008)
T ss_pred cccc---hHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhh---hhheecccCcccchhccCCCcccccchhh
Confidence 5532 2222 12222211 236799999999987 55566554 11121111111111
Q ss_pred -------------------------------------------hhHHHHHHHHHhcccccchhh--HH--HHH-------
Q 001155 590 -------------------------------------------MDCEKVAERLQVGLSYGHFFL--LK--EFY------- 615 (1136)
Q Consensus 590 -------------------------------------------~~~e~lae~L~~~l~~~~~~~--~~--~~~------- 615 (1136)
..|+.++..+...+......+ .. +..
T Consensus 428 ~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr 507 (1008)
T KOG0950|consen 428 KVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLR 507 (1008)
T ss_pred HHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhh
Confidence 234444433322111100000 00 000
Q ss_pred --------HHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC----CCCHhHHH
Q 001155 616 --------VVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL----PKSIEGYH 683 (1136)
Q Consensus 616 --------~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~----P~Sie~Yi 683 (1136)
.......+++++||+|++.++|+.++..|+.|.+.|++||+++++|+|+|+.+++|-.-+ ..+...|.
T Consensus 508 ~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Yk 587 (1008)
T KOG0950|consen 508 RIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYK 587 (1008)
T ss_pred cCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHH
Confidence 000123467999999999999999999999999999999999999999999999995433 23778999
Q ss_pred HHhcccCCCCC--CcEEEEEeccccHHHHHHHHhcCcC
Q 001155 684 QECGRAGRDGQ--RSSCVLYYSYSDFIRVKHMISQGVA 719 (1136)
Q Consensus 684 QriGRAGR~G~--~g~~il~~~~~D~~~~~~li~~~~~ 719 (1136)
||+|||||.|- .|.+++++...+......++....+
T Consensus 588 QM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 588 QMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred hhhhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 99999999985 7999999999999999999877654
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.91 E-value=1.2e-22 Score=256.47 Aligned_cols=314 Identities=19% Similarity=0.224 Sum_probs=199.9
Q ss_pred CCCHHHHHHHHHHHC--CCcEEEEccCCChHHHHHHhhhhh---C--CCcEEEEccChhhHHHHHHHHH-HcCCCeEEec
Q 001155 393 SFRPNQREIINATMS--GHDVFVLMPTGGGKSLTYQLPALI---C--PGITLVISPLVSLIQDQIMHLL-QANIPATFLS 464 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~y~LpaL~---~--~g~~LVIsPtraL~~dqv~~L~-~~gI~v~~L~ 464 (1136)
.|.|+|..++..++. ...+|+...+|.|||+-+.+.+.. . ..++|||+|. +|+.||..++. ++++...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 589999999988765 346999999999999987655432 2 3589999998 89999999985 4688887776
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCC-Cccchhhhhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHD-FRPDYQGLGIL 543 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhd-fR~~y~~L~~l 543 (1136)
++........ -.......+++|+|.+.+.........+. ...+++|||||||++. |..+ --..|..+..+
T Consensus 231 ~~~~~~~~~~----~~~pf~~~~~vI~S~~~l~~~~~~~~~l~----~~~wdlvIvDEAH~lk-~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 231 EERYAEAQHD----ADNPFETEQLVICSLDFLRRNKQRLEQAL----AAEWDLLVVDEAHHLV-WSEEAPSREYQVVEQL 301 (956)
T ss_pred Ccchhhhccc----ccCccccCcEEEEEHHHhhhCHHHHHHHh----hcCCCEEEEechhhhc-cCCCCcCHHHHHHHHH
Confidence 6542211100 00112356899999998853221111121 2348999999999985 2211 11225555444
Q ss_pred hccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEe--------------------------------------------
Q 001155 544 KQKFPNTPVLALTATATASVKEDVVQALGLVNCIIF-------------------------------------------- 579 (1136)
Q Consensus 544 ~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~-------------------------------------------- 579 (1136)
... ...+++||||+-..-..++...|.+-.+..|
T Consensus 302 a~~--~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 302 AEV--IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred hhc--cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 433 2358999999865333333322222221111
Q ss_pred --------------------------------------ccc------CCC----------Cchhhh--------------
Q 001155 580 --------------------------------------RQS------FNR----------PNLWMD-------------- 591 (1136)
Q Consensus 580 --------------------------------------~~s------~~r----------~nl~~~-------------- 591 (1136)
+.. |.. +.-+..
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 100 000 000000
Q ss_pred ---------------------HHHHHHHHHh------cccccchhhHHHHHHHH-hhcCCeEEEEcCCCCHHHHHHHHHH
Q 001155 592 ---------------------CEKVAERLQV------GLSYGHFFLLKEFYVVS-LECGHKAAFYHGSIDPAQRAFVQKQ 643 (1136)
Q Consensus 592 ---------------------~e~lae~L~~------~l~~~~~~~~~~~~~~l-~~~g~~v~~~Hagm~~~dR~~i~~~ 643 (1136)
.+.+.+.|+. +++.........+...+ ...|+.+..+||+|+..+|..+.+.
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 0001111111 01111112223344444 3568999999999999999999999
Q ss_pred HhcC--CceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecc---ccHHHHHHHHhcCc
Q 001155 644 WSKD--EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY---SDFIRVKHMISQGV 718 (1136)
Q Consensus 644 F~~g--~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~---~D~~~~~~li~~~~ 718 (1136)
|+++ .++|||||+++++|+|++.+++||+||+|+++..|.||+||+||.|+.+.+.+++.. .....+..++.+++
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 9984 699999999999999999999999999999999999999999999998877665532 22345555565544
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=5e-23 Score=244.78 Aligned_cols=269 Identities=20% Similarity=0.241 Sum_probs=183.2
Q ss_pred CCCCHHHHHHHHHHHC----CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcC-C--CeEEec
Q 001155 392 HSFRPNQREIINATMS----GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQAN-I--PATFLS 464 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~----g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~g-I--~v~~L~ 464 (1136)
..+|++|.+++.++.. ++..++++|||+|||.+++..+-.....+|||+|+++|+.||.+.+.... . .+..+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 4699999999999997 88899999999999999998888888889999999999999988777763 3 245555
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~ 544 (1136)
|+..... ...|.|+|...+.... .+..+ ....+++||+||||++.. +.|+.+ .
T Consensus 115 ~~~~~~~-------------~~~i~vat~qtl~~~~----~l~~~-~~~~~~liI~DE~Hh~~a------~~~~~~---~ 167 (442)
T COG1061 115 GGEKELE-------------PAKVTVATVQTLARRQ----LLDEF-LGNEFGLIIFDEVHHLPA------PSYRRI---L 167 (442)
T ss_pred CceeccC-------------CCcEEEEEhHHHhhhh----hhhhh-cccccCEEEEEccccCCc------HHHHHH---H
Confidence 5432110 1359999999885321 11111 122489999999999743 234433 2
Q ss_pred ccCCCCC-EEEEeeccchhhHH---HHHHHhcCcceEEeccc---------------------CCCCchh-------hhH
Q 001155 545 QKFPNTP-VLALTATATASVKE---DVVQALGLVNCIIFRQS---------------------FNRPNLW-------MDC 592 (1136)
Q Consensus 545 ~~~p~~~-iv~LSAT~~~~v~~---dI~~~L~l~~~~i~~~s---------------------~~r~nl~-------~~~ 592 (1136)
..+.... ++|||||+...... ++...++ ++++..+ ....... ...
T Consensus 168 ~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 168 ELLSAAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred HhhhcccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 3333333 99999998754322 2333332 1111100 0000000 000
Q ss_pred --------------------------HHHHHHHHh-------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHH
Q 001155 593 --------------------------EKVAERLQV-------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAF 639 (1136)
Q Consensus 593 --------------------------e~lae~L~~-------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~ 639 (1136)
..+...+.. .+..........+...+...|. +..+.+..+..+|..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~ 323 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREA 323 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHH
Confidence 000011110 0111112223344444445555 788999999999999
Q ss_pred HHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCC
Q 001155 640 VQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGR 691 (1136)
Q Consensus 640 i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR 691 (1136)
+++.|+.|.+++||++.++..|+|+|++.++|......|...|+||+||.-|
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999
No 86
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=245.79 Aligned_cols=299 Identities=20% Similarity=0.241 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEW 469 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~ 469 (1136)
.|-|+|+.+|..+-+++.+||.|-|.+|||.++-.++. ..+.++||-+|.++|.+|-+++|....-.|++.+|+.+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI 208 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI 208 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee
Confidence 58899999999999999999999999999999765554 347899999999999999999999988889999999875
Q ss_pred HHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCC
Q 001155 470 TEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPN 549 (1136)
Q Consensus 470 ~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~ 549 (1136)
. .....+|+|.|.|- .++.|...-. .-+.+||+||+|-|-+- -|+.+-. ..+.-...+
T Consensus 209 n-------------P~ASCLVMTTEILR--sMLYRGSEvm---rEVaWVIFDEIHYMRDk---ERGVVWE-ETIIllP~~ 266 (1041)
T KOG0948|consen 209 N-------------PDASCLVMTTEILR--SMLYRGSEVM---REVAWVIFDEIHYMRDK---ERGVVWE-ETIILLPDN 266 (1041)
T ss_pred C-------------CCCceeeeHHHHHH--HHHhccchHh---heeeeEEeeeehhcccc---ccceeee-eeEEecccc
Confidence 4 36778999999885 4444443333 34899999999998541 1111110 123334457
Q ss_pred CCEEEEeeccchhhHH-HHHHHhcCcceEEecccCCCCchh---------------------------------------
Q 001155 550 TPVLALTATATASVKE-DVVQALGLVNCIIFRQSFNRPNLW--------------------------------------- 589 (1136)
Q Consensus 550 ~~iv~LSAT~~~~v~~-dI~~~L~l~~~~i~~~s~~r~nl~--------------------------------------- 589 (1136)
++.++||||+|+...- +....++-.++.++.+.+.+..+.
T Consensus 267 vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 8999999999998532 233334555565555554444332
Q ss_pred -----------------------------------------------hhHHHHHHHHHhccccc--chhhHHHH------
Q 001155 590 -----------------------------------------------MDCEKVAERLQVGLSYG--HFFLLKEF------ 614 (1136)
Q Consensus 590 -----------------------------------------------~~~e~lae~L~~~l~~~--~~~~~~~~------ 614 (1136)
.+||..|-.+..+.... ....+..+
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 34444443333221110 00001111
Q ss_pred --------------HHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEE----EcCCC
Q 001155 615 --------------YVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----HHSLP 676 (1136)
Q Consensus 615 --------------~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VI----h~d~P 676 (1136)
..-++.+| +++||+||-+--++.|+-.|.+|-++||+||.+|++|+|.|+-.+|+ .||--
T Consensus 427 ~LseeDr~LPqie~iLPLL~RG--IGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRG--IGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGK 504 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhc--cccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCc
Confidence 11122344 78999999999999999999999999999999999999999877666 22221
Q ss_pred C----CHhHHHHHhcccCCCCC--CcEEEEEecccc-HHHHHHHHh
Q 001155 677 K----SIEGYHQECGRAGRDGQ--RSSCVLYYSYSD-FIRVKHMIS 715 (1136)
Q Consensus 677 ~----Sie~YiQriGRAGR~G~--~g~~il~~~~~D-~~~~~~li~ 715 (1136)
. |--+|+||.|||||.|. .|.||++.+..- ....+.|+.
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~k 550 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLK 550 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhc
Confidence 1 66799999999999997 788888887543 334444543
No 87
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.6e-23 Score=258.58 Aligned_cols=313 Identities=21% Similarity=0.219 Sum_probs=208.9
Q ss_pred hCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHcCCCe----E
Q 001155 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQANIPA----T 461 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v----~ 461 (1136)
||| .+-++|++++..+..|..++||||||+|||.++..++ +..+.+++|.+|.+||.+|.++.|......+ +
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vG 194 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVG 194 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhcc
Confidence 366 4899999999999999999999999999999966554 3457789999999999999999998875555 8
Q ss_pred EecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhh
Q 001155 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541 (1136)
Q Consensus 462 ~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~ 541 (1136)
+++|+.+.+ +...++|+|.|.|. .++.+... ....+..||+||+|+|.+. +|+.+-+.
T Consensus 195 L~TGDv~IN-------------~~A~clvMTTEILR--nMlyrg~~---~~~~i~~ViFDEvHyi~D~---eRG~VWEE- 252 (1041)
T COG4581 195 LMTGDVSIN-------------PDAPCLVMTTEILR--NMLYRGSE---SLRDIEWVVFDEVHYIGDR---ERGVVWEE- 252 (1041)
T ss_pred ceecceeeC-------------CCCceEEeeHHHHH--HHhccCcc---cccccceEEEEeeeecccc---ccchhHHH-
Confidence 889987654 47789999999885 44444322 3345899999999999763 45554332
Q ss_pred hhhccCCCCCEEEEeeccchhhHHHHHHHhcC---cceEEecccCCCCchh-----------------------------
Q 001155 542 ILKQKFPNTPVLALTATATASVKEDVVQALGL---VNCIIFRQSFNRPNLW----------------------------- 589 (1136)
Q Consensus 542 ~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l---~~~~i~~~s~~r~nl~----------------------------- 589 (1136)
.+......+++++||||.++.. ....|++. .++.++...+....+.
T Consensus 253 ~Ii~lP~~v~~v~LSATv~N~~--EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 253 VIILLPDHVRFVFLSATVPNAE--EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HHHhcCCCCcEEEEeCCCCCHH--HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 2333444689999999999983 44444431 1111111111111110
Q ss_pred -----------------------------------------------------------hhHHHHHHHHHhcccc---cc
Q 001155 590 -----------------------------------------------------------MDCEKVAERLQVGLSY---GH 607 (1136)
Q Consensus 590 -----------------------------------------------------------~~~e~lae~L~~~l~~---~~ 607 (1136)
..|+..+..+..+-.. ..
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 2344333333211000 00
Q ss_pred ---hh-hHH-----------------HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC
Q 001155 608 ---FF-LLK-----------------EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 666 (1136)
Q Consensus 608 ---~~-~~~-----------------~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~ 666 (1136)
+. .+. ..+..++.+| +++||+||-+..|..++..|..|-++|++||.+|++|||.|.
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RG--iavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa 488 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRG--IAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA 488 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhh--hhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc
Confidence 00 000 0011112233 569999999999999999999999999999999999999998
Q ss_pred ccEEE----EcC----CCCCHhHHHHHhcccCCCCC--CcEEEEEecc--ccHHHHHHHHhcC-cCCCCCCCCCC
Q 001155 667 VRFVI----HHS----LPKSIEGYHQECGRAGRDGQ--RSSCVLYYSY--SDFIRVKHMISQG-VAEQSPFTPGH 728 (1136)
Q Consensus 667 V~~VI----h~d----~P~Sie~YiQriGRAGR~G~--~g~~il~~~~--~D~~~~~~li~~~-~~~es~~~~~~ 728 (1136)
-.+|+ ++| .+-+..+|.|+.|||||.|. .|.+|++..+ .+......+.... .+-.|++.+.+
T Consensus 489 rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy 563 (1041)
T COG4581 489 RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSY 563 (1041)
T ss_pred cceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecch
Confidence 77766 333 22378999999999999997 5777777433 2244444444322 22344554444
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.1e-22 Score=250.54 Aligned_cols=310 Identities=20% Similarity=0.215 Sum_probs=233.5
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHC----C--CcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccCh
Q 001155 373 WDFPWTKKLEANNKKVFGNHSFRPNQREIINATMS----G--HDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLV 443 (1136)
Q Consensus 373 ~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~----g--~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtr 443 (1136)
..|+....+.+.+...|+|.. |+-|..||+.+.. + .|=|||+--|.|||-+++-++. +.+..+.|++||.
T Consensus 575 ~af~~d~~~q~~F~~~FPyeE-T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTT 653 (1139)
T COG1197 575 FAFPPDTEWQEEFEASFPYEE-TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTT 653 (1139)
T ss_pred CCCCCChHHHHHHHhcCCCcC-CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccH
Confidence 456777888889999999975 9999999999974 3 3789999999999999886654 5688999999999
Q ss_pred hhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceee
Q 001155 444 SLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519 (1136)
Q Consensus 444 aL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVV 519 (1136)
-|++|.++.|..+ +|++..+.-=.+..++..++..+.. |..+|||+|---|.+ + -.+..++|+|
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~--G~vDIvIGTHrLL~k-d---------v~FkdLGLlI 721 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE--GKVDIVIGTHRLLSK-D---------VKFKDLGLLI 721 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc--CCccEEEechHhhCC-C---------cEEecCCeEE
Confidence 9999999999876 6778888888888999999998887 899999999876642 1 1234589999
Q ss_pred eeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEe-cccCCCCchh---------
Q 001155 520 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIF-RQSFNRPNLW--------- 589 (1136)
Q Consensus 520 IDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~-~~s~~r~nl~--------- 589 (1136)
|||=|+. | +..=..+++...++-++.||||+-+.... ...+|+.+.-++ ..+.+|-.+.
T Consensus 722 IDEEqRF---G------Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~ 790 (1139)
T COG1197 722 IDEEQRF---G------VKHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL 790 (1139)
T ss_pred Eechhhc---C------ccHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCChH
Confidence 9999994 3 22223455666789999999999988654 334455543222 2333333222
Q ss_pred hhHHHHHHHHHh----cccccchhhHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccccc
Q 001155 590 MDCEKVAERLQV----GLSYGHFFLLKEFYVVSLE--CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN 663 (1136)
Q Consensus 590 ~~~e~lae~L~~----~l~~~~~~~~~~~~~~l~~--~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GID 663 (1136)
.-.+.+...|.. ...++.+..+......+.. -..++++-||.|+..+-+.++..|.+|+.+|||||.+.+.|||
T Consensus 791 ~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGID 870 (1139)
T COG1197 791 LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGID 870 (1139)
T ss_pred HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcC
Confidence 111222222221 1111222222222222222 2456999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 664 KPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 664 lP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
+|+++.+|..+.-+ .+...+|..||.||..+.+.|+++|.+.+
T Consensus 871 IPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 871 IPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 99999999777765 89999999999999999999999998644
No 89
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.2e-22 Score=259.42 Aligned_cols=280 Identities=19% Similarity=0.190 Sum_probs=176.8
Q ss_pred HHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----C--CcEEEEccC----hhhHHHHHHHHHH-cCCCeEEecCCC
Q 001155 399 REIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----P--GITLVISPL----VSLIQDQIMHLLQ-ANIPATFLSGNM 467 (1136)
Q Consensus 399 ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----~--g~~LVIsPt----raL~~dqv~~L~~-~gI~v~~L~g~~ 467 (1136)
.+++.++..++.++|+|+||||||. ++|.+.. + +.+++.-|. ++|+.+...++.. .|-.++.-.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v--- 154 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV--- 154 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee---
Confidence 4556666677788999999999999 7885432 1 233334463 5666666555543 233332211
Q ss_pred CHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc-ccccCCCCccchhhhhhhhcc
Q 001155 468 EWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC-VSQWGHDFRPDYQGLGILKQK 546 (1136)
Q Consensus 468 ~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~-ls~wGhdfR~~y~~L~~l~~~ 546 (1136)
....+. ...++|+|+||++|. +.+.. ......+++|||||||. ..+. ||...+ |..+...
T Consensus 155 rf~~~~---------s~~t~I~v~TpG~LL--~~l~~----d~~Ls~~~~IIIDEAHERsLn~--DfLLg~--Lk~lL~~ 215 (1294)
T PRK11131 155 RFNDQV---------SDNTMVKLMTDGILL--AEIQQ----DRLLMQYDTIIIDEAHERSLNI--DFILGY--LKELLPR 215 (1294)
T ss_pred cCcccc---------CCCCCEEEEChHHHH--HHHhc----CCccccCcEEEecCcccccccc--chHHHH--HHHhhhc
Confidence 111110 136899999999996 33322 12355699999999995 5443 354322 3334444
Q ss_pred CCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-chh-------------hhHHHHHHHHHh---------cc
Q 001155 547 FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-NLW-------------MDCEKVAERLQV---------GL 603 (1136)
Q Consensus 547 ~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-nl~-------------~~~e~lae~L~~---------~l 603 (1136)
.|+.++|++|||++.. .+.+.++-. +++...+...| ..+ .....+.+.+.. ++
T Consensus 216 rpdlKvILmSATid~e---~fs~~F~~a-pvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 216 RPDLKVIITSATIDPE---RFSRHFNNA-PIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred CCCceEEEeeCCCCHH---HHHHHcCCC-CEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999753 344444321 22211111111 000 011111111111 11
Q ss_pred cccchhhHHHHHHHHhhcCC---eEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC-----
Q 001155 604 SYGHFFLLKEFYVVSLECGH---KAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL----- 675 (1136)
Q Consensus 604 ~~~~~~~~~~~~~~l~~~g~---~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~----- 675 (1136)
+......+..+...+...++ .+..+||+|+..+|..+++. .|..+|||||+++++|||+|+|++||+++.
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~ 369 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISR 369 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccc
Confidence 12222334555555655554 47789999999999999886 578999999999999999999999999863
Q ss_pred ----------C---CCHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 676 ----------P---KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 676 ----------P---~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
| -|.++|.||+|||||. .+|.|+.+|+..++..
T Consensus 370 Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 370 YSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred cccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 3668999999999999 7999999999888754
No 90
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=1.5e-21 Score=250.33 Aligned_cols=283 Identities=18% Similarity=0.188 Sum_probs=179.0
Q ss_pred HHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHHHHHHHHHH-cCCCeEEecCC-CCHH
Q 001155 399 REIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMHLLQ-ANIPATFLSGN-MEWT 470 (1136)
Q Consensus 399 ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~dqv~~L~~-~gI~v~~L~g~-~~~~ 470 (1136)
.+++.++..++.+||+|+||||||. ++|.+.. .+.+++.-|.+--+......+.+ +|.+++...|- ....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 3455566667789999999999998 6776543 23444555766555555555544 36666554442 1111
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc-ccccCCCCccchhhhhhhhccCCC
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC-VSQWGHDFRPDYQGLGILKQKFPN 549 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~-ls~wGhdfR~~y~~L~~l~~~~p~ 549 (1136)
.+. ...++|+|+||+.|. ..+ ........+++|||||||. ..+. ||--.+ +..+....++
T Consensus 151 ~~~---------s~~T~I~~~TdGiLL--r~l----~~d~~L~~~~~IIIDEaHERsL~~--D~LL~l--Lk~il~~rpd 211 (1283)
T TIGR01967 151 DQV---------SSNTLVKLMTDGILL--AET----QQDRFLSRYDTIIIDEAHERSLNI--DFLLGY--LKQLLPRRPD 211 (1283)
T ss_pred ccc---------CCCceeeeccccHHH--HHh----hhCcccccCcEEEEcCcchhhccc--hhHHHH--HHHHHhhCCC
Confidence 111 136889999999986 222 2222345689999999994 4442 233222 3334445578
Q ss_pred CCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-chh-------------hhHHHHHHHHHh---------ccccc
Q 001155 550 TPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-NLW-------------MDCEKVAERLQV---------GLSYG 606 (1136)
Q Consensus 550 ~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-nl~-------------~~~e~lae~L~~---------~l~~~ 606 (1136)
.++|++|||+... .+.++++-. +++...+...| .++ ...+.+.+.+.. +++..
T Consensus 212 LKlIlmSATld~~---~fa~~F~~a-pvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLp 287 (1283)
T TIGR01967 212 LKIIITSATIDPE---RFSRHFNNA-PIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLP 287 (1283)
T ss_pred CeEEEEeCCcCHH---HHHHHhcCC-CEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 8899999999753 455554322 22211111100 000 011112222221 11122
Q ss_pred chhhHHHHHHHHhhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC------
Q 001155 607 HFFLLKEFYVVSLEC---GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK------ 677 (1136)
Q Consensus 607 ~~~~~~~~~~~l~~~---g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~------ 677 (1136)
....+..+...+... ++.+..+||+|+.++|..+++.+ +..+|||||+++++|||+|+|++||++++++
T Consensus 288 g~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 288 GEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 223344444445444 35688999999999999986654 3479999999999999999999999999654
Q ss_pred ------------CHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 678 ------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 678 ------------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
|.++|.||.|||||.| +|.|+.+|+..++..
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6689999999999997 999999999887754
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.86 E-value=1.7e-20 Score=235.70 Aligned_cols=296 Identities=17% Similarity=0.138 Sum_probs=185.9
Q ss_pred hCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc------C
Q 001155 389 FGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA------N 457 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~------g 457 (1136)
|+...+||+|..+........-++|.||||+|||.++++.+... ...++|..||++++++++.++.+. .
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 55568999999886544445668999999999999988776532 357899999999999999988642 2
Q ss_pred CCeEEecCCCCHHHHHHHH-----------------HHHhc----ccCcceEEEeChhhhhchHHHHHHHHhhhhhh-cc
Q 001155 458 IPATFLSGNMEWTEQQEIL-----------------RELNS----DYCKYKLLYVTPEKVAKSDVLLRQLESLNARE-LL 515 (1136)
Q Consensus 458 I~v~~L~g~~~~~~~~~~l-----------------~~l~~----~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~-~l 515 (1136)
..+..++|..........+ ..+.. ..--.+|+|+|+.++... .+..+...+..+. .-
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a-~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLIS-VLPVKHRFIRGFGLGR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHH-HHccchHHHHHHhhcc
Confidence 3466666654322110000 00000 001268999999998631 1111111111110 12
Q ss_pred ceeeeeccccccccCCCCccchhhhhhhhcc--CCCCCEEEEeeccchhhHHHHHHHhcCcc--------eE--------
Q 001155 516 ARIVIDEAHCVSQWGHDFRPDYQGLGILKQK--FPNTPVLALTATATASVKEDVVQALGLVN--------CI-------- 577 (1136)
Q Consensus 516 ~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~--~p~~~iv~LSAT~~~~v~~dI~~~L~l~~--------~~-------- 577 (1136)
++|||||+|.+..+ ...+ |..+... ....++|+||||+|...++.+...++... +.
T Consensus 441 svvIiDEVHAyD~y----m~~l--L~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 441 SVLIVDEVHAYDAY----MYGL--LEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred CeEEEechhhCCHH----HHHH--HHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 57999999995321 1111 1222221 13578999999999998888777543210 00
Q ss_pred --EecccC------CCCchh-------------hhHHHHHHHHHh----cccccchhhHHHHHHHHhhcC---CeEEEEc
Q 001155 578 --IFRQSF------NRPNLW-------------MDCEKVAERLQV----GLSYGHFFLLKEFYVVSLECG---HKAAFYH 629 (1136)
Q Consensus 578 --i~~~s~------~r~nl~-------------~~~e~lae~L~~----~l~~~~~~~~~~~~~~l~~~g---~~v~~~H 629 (1136)
.+.... .+..+. ...+.+.+.+.. ++..+.+....+++..+...+ ..+..+|
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 000000 000010 011122222221 234444555667777776554 6799999
Q ss_pred CCCCHHHHH----HHHHHH-hcCC---ceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCC
Q 001155 630 GSIDPAQRA----FVQKQW-SKDE---INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 694 (1136)
Q Consensus 630 agm~~~dR~----~i~~~F-~~g~---i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~ 694 (1136)
|.++..+|. .+++.| ++|+ ..|||||.+++.|||+ +++++|....| +..|+||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999994 566677 5565 4799999999999999 68999998888 7899999999999875
No 92
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.86 E-value=6.7e-21 Score=202.91 Aligned_cols=183 Identities=21% Similarity=0.238 Sum_probs=140.4
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSL 445 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL 445 (1136)
++++++.+...+.+ +|+..|+++|.++++.+++|+|+++++|||+|||++|++|++.. ++++|||+|+++|
T Consensus 3 ~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 3 ELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred cCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 45566888888888 59999999999999999999999999999999999999998732 3479999999999
Q ss_pred HHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeee
Q 001155 446 IQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVID 521 (1136)
Q Consensus 446 ~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVID 521 (1136)
+.|+...+... ++.+..+.|+.........+. ...+|+|+||++|. +.+.+.. .....++++|+|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~--~~l~~~~---~~~~~l~~lIvD 150 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLL--DLLERGK---LDLSKVKYLVLD 150 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHH--HHHHcCC---CChhhCCEEEEe
Confidence 99998888776 678888888887655544332 37899999999985 3333222 233558999999
Q ss_pred ccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 522 EAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 522 EAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
|+|.+.+++ |...+..+.. ......+++++|||+++.+...+...+.
T Consensus 151 E~h~~~~~~--~~~~~~~~~~--~l~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 151 EADRMLDMG--FEDQIREILK--LLPKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred ChHHhhccC--hHHHHHHHHH--hCCcccEEEEEeccCCHHHHHHHHHHCC
Confidence 999987654 4444433322 2223688999999999887665555443
No 93
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=231.07 Aligned_cols=336 Identities=19% Similarity=0.265 Sum_probs=239.6
Q ss_pred CCCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhC--CCcEEEEccChhhHHHHHHHHHHc-----CCCeEE
Q 001155 391 NHSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALIC--PGITLVISPLVSLIQDQIMHLLQA-----NIPATF 462 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~--~g~~LVIsPtraL~~dqv~~L~~~-----gI~v~~ 462 (1136)
|..++|+|.++++.+++ +.+++|++|+|+|||.|+.+.++.. .+++++|+|+-+.+..+++.|.+. |..+..
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~ 1220 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVK 1220 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEe
Confidence 34569999999999996 5679999999999999999998865 678999999999988888887664 888999
Q ss_pred ecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhh---
Q 001155 463 LSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG--- 539 (1136)
Q Consensus 463 L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~--- 539 (1136)
++|..+.+.... ..-+|+|+|||+| +.+. ..+.+++.|.||.|.+.. .+-+.|..
T Consensus 1221 l~ge~s~~lkl~---------~~~~vii~tpe~~---d~lq-------~iQ~v~l~i~d~lh~igg---~~g~v~evi~S 1278 (1674)
T KOG0951|consen 1221 LTGETSLDLKLL---------QKGQVIISTPEQW---DLLQ-------SIQQVDLFIVDELHLIGG---VYGAVYEVICS 1278 (1674)
T ss_pred cCCccccchHHh---------hhcceEEechhHH---HHHh-------hhhhcceEeeehhhhhcc---cCCceEEEEee
Confidence 999887765432 2668999999999 5551 456699999999999963 13333332
Q ss_pred hhhhhccC-CCCCEEEEeeccchhhHHHHHHHhcCcceEEec-ccCCCCchh-----------hhHH------HHHHHHH
Q 001155 540 LGILKQKF-PNTPVLALTATATASVKEDVVQALGLVNCIIFR-QSFNRPNLW-----------MDCE------KVAERLQ 600 (1136)
Q Consensus 540 L~~l~~~~-p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~-~s~~r~nl~-----------~~~e------~lae~L~ 600 (1136)
++.+..++ .++++++||..+++. .|. ++.....+|. .+..||+.. .... .....+.
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~ 1353 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIV 1353 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHH
Confidence 22233333 468899999998886 333 5555444443 333444433 0000 0000110
Q ss_pred h-------cccccch---------------------hhH------HHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 001155 601 V-------GLSYGHF---------------------FLL------KEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSK 646 (1136)
Q Consensus 601 ~-------~l~~~~~---------------------~~~------~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~ 646 (1136)
. .+.+... +.. ++.....+.+| ++ |-||+..+...+...|..
T Consensus 1354 ~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~g--vg--~e~~s~~d~~iv~~l~e~ 1429 (1674)
T KOG0951|consen 1354 RHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHG--VG--HEGLSSNDQEIVQQLFEA 1429 (1674)
T ss_pred HHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccc--cc--ccccCcchHHHHHHHHhc
Confidence 0 0000000 000 00011111233 33 999999999999999999
Q ss_pred CCceEEEeeccccccccCCCccEEE----------EcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 647 DEINIICATVAFGMGINKPDVRFVI----------HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 647 g~i~VLVAT~alg~GIDlP~V~~VI----------h~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
|.|+|+|...- .||+-....-+|+ |-..++++.+.+||+|+|.| .|.|++++...+..+|++++.+
T Consensus 1430 g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e 1505 (1674)
T KOG0951|consen 1430 GAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYE 1505 (1674)
T ss_pred CcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccC
Confidence 99999999888 9999887777776 44467789999999999998 5799999999999999999999
Q ss_pred CcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHH
Q 001155 717 GVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLL 764 (1136)
Q Consensus 717 ~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ 764 (1136)
.+|.+|.+..-+++.+ ..++....+++.++.++|++++..+||.-
T Consensus 1506 ~lPves~lq~~lhd~~---n~ei~~~tienkqd~vd~lt~s~~yrr~~ 1550 (1674)
T KOG0951|consen 1506 PLPVESHLQHCLHDNF---NAEIVTKTIENKQDAVDYLTWSFMYRRLP 1550 (1674)
T ss_pred cCchHHHHHHHHHhhh---hHHHHHHHHHhHHHHHHHHHHHHhhhccc
Confidence 9999987765555433 23455566889999999999887777643
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.84 E-value=8.4e-20 Score=231.51 Aligned_cols=292 Identities=21% Similarity=0.157 Sum_probs=193.6
Q ss_pred CCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhh--hhC----CCcEEEEccChhhHHHHHHHHHHc--CCCe
Q 001155 393 SFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPA--LIC----PGITLVISPLVSLIQDQIMHLLQA--NIPA 460 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~Lpa--L~~----~g~~LVIsPtraL~~dqv~~L~~~--gI~v 460 (1136)
.|+++|.+++..++ .|.+.|++-.+|.|||+..+..+ +.. .+.+|||+|. +|+.+|..++.+. .+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999999875 57789999999999999654332 221 4678999997 6777899999876 4667
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
..+.|+... +........ ..+.++|+|+|++.+... ...+.. ...++|||||||+|-.. -..+
T Consensus 248 ~~~~G~~~e--R~~~~~~~~-~~~~~dVvITSYe~l~~e---~~~L~k----~~W~~VIvDEAHrIKN~-------~Skl 310 (1033)
T PLN03142 248 VKFHGNPEE--RAHQREELL-VAGKFDVCVTSFEMAIKE---KTALKR----FSWRYIIIDEAHRIKNE-------NSLL 310 (1033)
T ss_pred EEEeCCHHH--HHHHHHHHh-cccCCCcceecHHHHHHH---HHHhcc----CCCCEEEEcCccccCCH-------HHHH
Confidence 777765332 222111111 125789999999988531 111111 23689999999997432 1223
Q ss_pred hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc------CCC------------------Cchh-------
Q 001155 541 GILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS------FNR------------------PNLW------- 589 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s------~~r------------------~nl~------- 589 (1136)
......+.....++||+|+-.+...++...|.+..+-+|... |.. |-+.
T Consensus 311 skalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV 390 (1033)
T PLN03142 311 SKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV 390 (1033)
T ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHH
Confidence 334444556678999999988877777777765544332210 000 0000
Q ss_pred ------------------------hh-----------------HHHHHHHHHhc--------------------------
Q 001155 590 ------------------------MD-----------------CEKVAERLQVG-------------------------- 602 (1136)
Q Consensus 590 ------------------------~~-----------------~e~lae~L~~~-------------------------- 602 (1136)
.. +..+...|+..
T Consensus 391 ~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~S 470 (1033)
T PLN03142 391 EKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENS 470 (1033)
T ss_pred hhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhh
Confidence 00 00000001000
Q ss_pred ---------------------ccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC---CceEEEeeccc
Q 001155 603 ---------------------LSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD---EINIICATVAF 658 (1136)
Q Consensus 603 ---------------------l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g---~i~VLVAT~al 658 (1136)
++......+..+...+...|+....+||+++..+|..+++.|... ..-+|++|.+.
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAG 550 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAG 550 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccc
Confidence 000000111222333445688889999999999999999999753 34578999999
Q ss_pred cccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEe
Q 001155 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 702 (1136)
Q Consensus 659 g~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~ 702 (1136)
|.|||+..+++||+||+++++..+.|++||+.|.|+...+.+|.
T Consensus 551 GlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 551 GLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred ccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999999999999999999999999999987665553
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.4e-19 Score=222.63 Aligned_cols=315 Identities=18% Similarity=0.150 Sum_probs=205.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
..+.++.+..+|+. +++.|.-..-.+..|+ |+.|.||.|||+++.+|++.. +..+-|++|+--|+.+-...+..
T Consensus 67 A~vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 67 AVAREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred HHHHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHH
Confidence 35667788888864 6788877766666776 999999999999999998854 77899999999999887776654
Q ss_pred ----cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh---hhhhhccceeeeecccccc-
Q 001155 456 ----ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES---LNARELLARIVIDEAHCVS- 527 (1136)
Q Consensus 456 ----~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~---l~~~~~l~lVVIDEAH~ls- 527 (1136)
+|++++++.++++..++...+ .++|+|+|...+. .|.+...+.. -.....+.+.||||||.++
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--------~~dI~Y~t~~e~g-fDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi 214 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--------NCDITYSTNSELG-FDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI 214 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--------cCCCeecCCcccc-ccchhhccccchhhhhccCcceeeeccchheee
Confidence 499999999998887766554 6799999999884 3555543321 1112357899999999874
Q ss_pred cc--------C--CCCccchhhhhhhhccC--------------------CCCCEEEEeeccchh---------------
Q 001155 528 QW--------G--HDFRPDYQGLGILKQKF--------------------PNTPVLALTATATAS--------------- 562 (1136)
Q Consensus 528 ~w--------G--hdfR~~y~~L~~l~~~~--------------------p~~~iv~LSAT~~~~--------------- 562 (1136)
+. | ......|..+..+...+ ...+.+.||..-...
T Consensus 215 DeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~ 294 (796)
T PRK12906 215 DEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSEN 294 (796)
T ss_pred ccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchh
Confidence 10 1 01111222221111111 012223333210000
Q ss_pred --hHHHHHHHhc----C--c--------ceEEecccCCCCch--h-----------------------------------
Q 001155 563 --VKEDVVQALG----L--V--------NCIIFRQSFNRPNL--W----------------------------------- 589 (1136)
Q Consensus 563 --v~~dI~~~L~----l--~--------~~~i~~~s~~r~nl--~----------------------------------- 589 (1136)
....+.+.|. + . ...++.....|.-. .
T Consensus 295 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~ 374 (796)
T PRK12906 295 TALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRM 374 (796)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHh
Confidence 0011111110 0 0 01111111111100 0
Q ss_pred -------------------------------------------------hhHHHHHHHHHh--------cccccchhhHH
Q 001155 590 -------------------------------------------------MDCEKVAERLQV--------GLSYGHFFLLK 612 (1136)
Q Consensus 590 -------------------------------------------------~~~e~lae~L~~--------~l~~~~~~~~~ 612 (1136)
.....+.+.+.. ++....+....
T Consensus 375 Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se 454 (796)
T PRK12906 375 YKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE 454 (796)
T ss_pred cchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 011122222211 12222233345
Q ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC---Ccc-----EEEEcCCCCCHhHHHH
Q 001155 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP---DVR-----FVIHHSLPKSIEGYHQ 684 (1136)
Q Consensus 613 ~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP---~V~-----~VIh~d~P~Sie~YiQ 684 (1136)
.+...+...|+....+||++...++..+.+.+..|. |+|||+++|||+|++ +|. +||+++.|.|...|.|
T Consensus 455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Q 532 (796)
T PRK12906 455 RLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQ 532 (796)
T ss_pred HHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHH
Confidence 566667778999999999999888888888888886 999999999999994 899 9999999999999999
Q ss_pred HhcccCCCCCCcEEEEEeccccH
Q 001155 685 ECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 685 riGRAGR~G~~g~~il~~~~~D~ 707 (1136)
++||+||.|.+|.+..|++..|-
T Consensus 533 l~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 533 LRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HhhhhccCCCCcceEEEEeccch
Confidence 99999999999999999998763
No 96
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.84 E-value=5.4e-21 Score=212.78 Aligned_cols=256 Identities=16% Similarity=0.209 Sum_probs=161.6
Q ss_pred EEEEccChhhHHHHHHHHHHc-------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh
Q 001155 436 TLVISPLVSLIQDQIMHLLQA-------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES 508 (1136)
Q Consensus 436 ~LVIsPtraL~~dqv~~L~~~-------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~ 508 (1136)
+||+-|.++|+.|..+++.++ .++..++.|+.....|...+.+ +.+|+|.||+++. +.+...+..
T Consensus 289 avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~------g~~ivvGtpgRl~--~~is~g~~~ 360 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKD------GTHIVVGTPGRLL--QPISKGLVT 360 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhc------CceeeecCchhhh--hhhhcccee
Confidence 699999999999887766554 2344456666666666555543 8999999999996 455444333
Q ss_pred hhhhhccceeeeeccccccccCCCCccchhhhhhhhccCC---CCCEEEEeeccchhhHHHHHHHh-cCcceE-------
Q 001155 509 LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP---NTPVLALTATATASVKEDVVQAL-GLVNCI------- 577 (1136)
Q Consensus 509 l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p---~~~iv~LSAT~~~~v~~dI~~~L-~l~~~~------- 577 (1136)
+. .++++|+|||+.++.-|.+ ...|+-.+.+..... ..+.+..|||+..-....+.+.+ .+...+
T Consensus 361 lt---~crFlvlDead~lL~qgy~-d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~ 436 (725)
T KOG0349|consen 361 LT---HCRFLVLDEADLLLGQGYD-DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDL 436 (725)
T ss_pred ee---eeEEEEecchhhhhhcccH-HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccc
Confidence 33 3799999999999876632 111111122222222 34578889996543211111111 110000
Q ss_pred ----------Eeccc-----------------CCCCchh---------hhHHHHH------HHHHh-----ccccc-chh
Q 001155 578 ----------IFRQS-----------------FNRPNLW---------MDCEKVA------ERLQV-----GLSYG-HFF 609 (1136)
Q Consensus 578 ----------i~~~s-----------------~~r~nl~---------~~~e~la------e~L~~-----~l~~~-~~~ 609 (1136)
....+ ..+.|+. ....++. ..++. .+.+. ...
T Consensus 437 vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 437 VPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQ 516 (725)
T ss_pred cchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccc
Confidence 00000 0011111 0000000 00000 01110 111
Q ss_pred hHHHHHHHHhhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHh
Q 001155 610 LLKEFYVVSLEC---GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQEC 686 (1136)
Q Consensus 610 ~~~~~~~~l~~~---g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQri 686 (1136)
..+.+..++... .+.+..+||+..+.+|+..++.|..++++.||||+++++|||+..+-++|+..+|..-.+|+|||
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRI 596 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhh
Confidence 123333444333 37899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEEec
Q 001155 687 GRAGRDGQRSSCVLYYS 703 (1136)
Q Consensus 687 GRAGR~G~~g~~il~~~ 703 (1136)
||.||+.+.|.+|.+..
T Consensus 597 grvgraermglaislva 613 (725)
T KOG0349|consen 597 GRVGRAERMGLAISLVA 613 (725)
T ss_pred hccchhhhcceeEEEee
Confidence 99999999999998864
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=3.8e-20 Score=190.46 Aligned_cols=156 Identities=35% Similarity=0.507 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc----CCCeEEecC
Q 001155 395 RPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA----NIPATFLSG 465 (1136)
Q Consensus 395 rpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g 465 (1136)
+|+|.++++.+++|+++++.||||+|||++|+++++.. ..++||++|+++|+.++...+... ++++..+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999742 248999999999999999999886 357888888
Q ss_pred CCCHHHHH-HHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhh
Q 001155 466 NMEWTEQQ-EILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544 (1136)
Q Consensus 466 ~~~~~~~~-~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~ 544 (1136)
+....... ..+ . ..++|+|+||+++. +.+.. ... ....+++|||||+|++..|+ |+..+..+....
T Consensus 81 ~~~~~~~~~~~~-~-----~~~~ilv~T~~~l~--~~~~~--~~~-~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~ 147 (169)
T PF00270_consen 81 GQSISEDQREVL-S-----NQADILVTTPEQLL--DLISN--GKI-NISRLSLIVIDEAHHLSDET--FRAMLKSILRRL 147 (169)
T ss_dssp TSCHHHHHHHHH-H-----TTSSEEEEEHHHHH--HHHHT--TSS-TGTTESEEEEETHHHHHHTT--HHHHHHHHHHHS
T ss_pred cccccccccccc-c-----ccccccccCcchhh--ccccc--ccc-ccccceeeccCccccccccc--HHHHHHHHHHHh
Confidence 88755222 222 1 47999999999985 33332 112 23348999999999999874 777777665555
Q ss_pred ccCCCCCEEEEeeccchhh
Q 001155 545 QKFPNTPVLALTATATASV 563 (1136)
Q Consensus 545 ~~~p~~~iv~LSAT~~~~v 563 (1136)
...++.+++++|||++..+
T Consensus 148 ~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp HTTTTSEEEEEESSSTHHH
T ss_pred cCCCCCcEEEEeeCCChhH
Confidence 5555788999999999543
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.83 E-value=3e-19 Score=230.31 Aligned_cols=305 Identities=19% Similarity=0.165 Sum_probs=176.6
Q ss_pred CCCCHHHHHHHHHHH----C-CCcEEEEccCCChHHHHHHhhh--hhC---CCcEEEEccChhhHHHHHHHHHHcCCCeE
Q 001155 392 HSFRPNQREIINATM----S-GHDVFVLMPTGGGKSLTYQLPA--LIC---PGITLVISPLVSLIQDQIMHLLQANIPAT 461 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~-g~dvLV~APTGsGKTl~y~Lpa--L~~---~g~~LVIsPtraL~~dqv~~L~~~gI~v~ 461 (1136)
..+|++|.+||.++. . .+.+|++||||+|||.+++..+ +.. ..++|||+|+++|+.|....|...++...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 358999999998875 2 3579999999999998754222 222 46899999999999999999988755332
Q ss_pred -EecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh--hhhhhccceeeeeccccccc----cC---C
Q 001155 462 -FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES--LNARELLARIVIDEAHCVSQ----WG---H 531 (1136)
Q Consensus 462 -~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~--l~~~~~l~lVVIDEAH~ls~----wG---h 531 (1136)
.+.+-..... +.... .....+|+|+|..++.+ .+...... ......+++|||||||+-.. .+ .
T Consensus 492 ~~~~~i~~i~~----L~~~~-~~~~~~I~iaTiQtl~~--~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 492 QTFASIYDIKG----LEDKF-PEDETKVHVATVQGMVK--RILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred cchhhhhchhh----hhhhc-ccCCCCEEEEEHHHHHH--hhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 1111111110 00000 01357899999998852 11110000 01234588999999999421 00 0
Q ss_pred CCc---cchhhhhhhhccCCCCCEEEEeeccchhhHHHH---------HHHh--cCc----ceEEecccCCCCc------
Q 001155 532 DFR---PDYQGLGILKQKFPNTPVLALTATATASVKEDV---------VQAL--GLV----NCIIFRQSFNRPN------ 587 (1136)
Q Consensus 532 dfR---~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI---------~~~L--~l~----~~~i~~~s~~r~n------ 587 (1136)
.|| ..|...+.+...| +...||||||+......-. .+.+ |.. .+..+...+.+..
T Consensus 565 ~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred ccchhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 011 1133344444433 5678999999975432210 0000 100 1111111100000
Q ss_pred ---------------------hh-----------------hhHHHHHHHHHh------cccccchhhHHHHHHHHhh---
Q 001155 588 ---------------------LW-----------------MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLE--- 620 (1136)
Q Consensus 588 ---------------------l~-----------------~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~--- 620 (1136)
+. ..++.+.+.+.. ++++....+...+...+.+
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 00 001111111110 1111122222222222211
Q ss_pred -c--C---CeEEEEcCCCCHHHHHHHHHHHhcCCc-eEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCC
Q 001155 621 -C--G---HKAAFYHGSIDPAQRAFVQKQWSKDEI-NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 621 -~--g---~~v~~~Hagm~~~dR~~i~~~F~~g~i-~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G 693 (1136)
. + ..+..+||+++ ++..+++.|+++.. +|+|+++++.+|+|+|.|..||.+..++|...|+||+||+.|..
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 1 1 24566888875 56789999999887 69999999999999999999999999999999999999999964
Q ss_pred C--CcEEEEEecccc
Q 001155 694 Q--RSSCVLYYSYSD 706 (1136)
Q Consensus 694 ~--~g~~il~~~~~D 706 (1136)
. .....++++..+
T Consensus 802 ~~~~K~~f~I~D~vg 816 (1123)
T PRK11448 802 PEIGKTHFRIFDAVD 816 (1123)
T ss_pred ccCCCceEEEEehHH
Confidence 3 233444554433
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=8.2e-18 Score=207.90 Aligned_cols=308 Identities=19% Similarity=0.143 Sum_probs=215.2
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
-+.++.+..+|+. +++.|.-..-.+..|+ |+.|.||+|||++|.+|++. .+..+-||+|+..|+.+-...+...
T Consensus 69 ~vrEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 69 VVREASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred HHHHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4567777777864 5778877766666664 99999999999999999963 3556889999999999877776554
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh-h--hhhhccceeeeecccccc-c
Q 001155 457 ----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES-L--NARELLARIVIDEAHCVS-Q 528 (1136)
Q Consensus 457 ----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~-l--~~~~~l~lVVIDEAH~ls-~ 528 (1136)
|++++++.|+++..++...+ .++|+|+||..+. .|.+...+.. . .....+.++||||||.|+ +
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y--------~~dI~ygT~~elg-fDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID 216 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAY--------AADITYGTNNEFG-FDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID 216 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhc--------CCCeEEECCcchh-hhhhhcccccchhhhcccccceEEEechhhheec
Confidence 89999999999888776653 5799999999993 1666544321 0 112458899999999885 0
Q ss_pred ------------------------------cCCCCc-------------------------cch----hhh---------
Q 001155 529 ------------------------------WGHDFR-------------------------PDY----QGL--------- 540 (1136)
Q Consensus 529 ------------------------------wGhdfR-------------------------~~y----~~L--------- 540 (1136)
-+.+|. ..| ..+
T Consensus 217 eArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~ 296 (830)
T PRK12904 217 EARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALR 296 (830)
T ss_pred cCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHH
Confidence 000110 000 000
Q ss_pred --------------------------------------------------------------hhhhccCCCCCEEEEeec
Q 001155 541 --------------------------------------------------------------GILKQKFPNTPVLALTAT 558 (1136)
Q Consensus 541 --------------------------------------------------------------~~l~~~~p~~~iv~LSAT 558 (1136)
..+...++ .+.|||+|
T Consensus 297 A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~--kl~GmTGT 374 (830)
T PRK12904 297 AHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYE--KLAGMTGT 374 (830)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcc--hhcccCCC
Confidence 00111111 35678888
Q ss_pred cchhhHHHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh--------cccccchhhHHHHHHHH
Q 001155 559 ATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV--------GLSYGHFFLLKEFYVVS 618 (1136)
Q Consensus 559 ~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~--------~l~~~~~~~~~~~~~~l 618 (1136)
+... ...+.+..++.- +.-+.++|... .....+.+.+.. ++....+.....+...+
T Consensus 375 a~te-~~E~~~iY~l~v---v~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L 450 (830)
T PRK12904 375 ADTE-AEEFREIYNLDV---VVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLL 450 (830)
T ss_pred cHHH-HHHHHHHhCCCE---EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHH
Confidence 8643 344555444432 23333444433 112223333321 23333444556677778
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCc-------------------------------
Q 001155 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV------------------------------- 667 (1136)
Q Consensus 619 ~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V------------------------------- 667 (1136)
...|+....+||. ..+|+..+..|+.+...|+|||+++|||+|++--
T Consensus 451 ~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (830)
T PRK12904 451 KKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHE 528 (830)
T ss_pred HHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhh
Confidence 8899999999996 7799999999999999999999999999998643
Q ss_pred -------cEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 668 -------RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 668 -------~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
-+||....|.|..---|-.|||||.|.+|.+..|.+..|-
T Consensus 529 ~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 529 EVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred hHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 3788888999999999999999999999999999998763
No 100
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=8.4e-18 Score=207.92 Aligned_cols=313 Identities=19% Similarity=0.159 Sum_probs=200.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHHc
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.+.++.+.++|.. +++.|.-.--++..|+ |+.|+||+|||++|.||++.. +..++||+|++.|+.+....+..+
T Consensus 70 ~vrEa~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 70 TVREVSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred HHHHHHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 4566777777853 4566665554555554 999999999999999999843 567999999999999877777654
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhh-hchHHHHHHHH-hhh--hhhccceeeeeccccccc
Q 001155 457 ----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV-AKSDVLLRQLE-SLN--ARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 457 ----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL-~~~d~l~r~l~-~l~--~~~~l~lVVIDEAH~ls~ 528 (1136)
|+.+.++.|+++...+...+ .++|+|+||++| . |.+...+. .+. ....+.++||||||.|+=
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgf--DyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGF--DYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhH--HHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 89999999998877665433 679999999998 3 55554421 110 124589999999999851
Q ss_pred ---------cC--CCCccchhhhhhhhccC---------------CCCCEEEEeeccchhhHH-----------------
Q 001155 529 ---------WG--HDFRPDYQGLGILKQKF---------------PNTPVLALTATATASVKE----------------- 565 (1136)
Q Consensus 529 ---------wG--hdfR~~y~~L~~l~~~~---------------p~~~iv~LSAT~~~~v~~----------------- 565 (1136)
-| .+-...|..+..+...+ .....+.||-.-...+..
T Consensus 217 DeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~ 296 (896)
T PRK13104 217 DEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHA 296 (896)
T ss_pred hccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCc
Confidence 01 11112233222221111 122344455431111111
Q ss_pred -------HHHHHhc----C--c--------ceEEecccCCCCc--------hh---------------------------
Q 001155 566 -------DVVQALG----L--V--------NCIIFRQSFNRPN--------LW--------------------------- 589 (1136)
Q Consensus 566 -------dI~~~L~----l--~--------~~~i~~~s~~r~n--------l~--------------------------- 589 (1136)
.+.+.|. + . ...++.....|.- ++
T Consensus 297 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~F 376 (896)
T PRK13104 297 SNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFF 376 (896)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHH
Confidence 1111110 0 0 0011111111100 00
Q ss_pred ---------------------------------------------------hhHHHHHHHHHh--------cccccchhh
Q 001155 590 ---------------------------------------------------MDCEKVAERLQV--------GLSYGHFFL 610 (1136)
Q Consensus 590 ---------------------------------------------------~~~e~lae~L~~--------~l~~~~~~~ 610 (1136)
.....+.+.+.. ++....+..
T Consensus 377 r~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 377 RMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred HhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 001112222211 122223333
Q ss_pred HHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC------------------------
Q 001155 611 LKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD------------------------ 666 (1136)
Q Consensus 611 ~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~------------------------ 666 (1136)
...+...+...|+....+||.+...+|..+.+.|+.| .|+|||+++|||+|+.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 4556667778899999999999999999999999999 49999999999999852
Q ss_pred --------------ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 667 --------------VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 667 --------------V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
=-+||-...+.|-.-=-|-.|||||.|.+|.+-.|.+..|-
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12678777888888889999999999999999999988774
No 101
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=5.4e-19 Score=212.33 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHH--HHhhhhhC---CCcEEEEccChhhHHHHHHHHHHcC-----CCeEE
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLT--YQLPALIC---PGITLVISPLVSLIQDQIMHLLQAN-----IPATF 462 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~--y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~g-----I~v~~ 462 (1136)
.+..||.+.+..+-.++.++|+|||.+|||.+ |.+-.+.+ .+++|+++|+++|+.|.......+. ..-..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 36789999999999999999999999999986 34444444 6899999999999997666655442 11223
Q ss_pred ecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhh
Q 001155 463 LSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGI 542 (1136)
Q Consensus 463 L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~ 542 (1136)
+.|+++.+.+.. ...++|+|+-||.+. ..+...-....+...+++||+||+|++... ..... ..
T Consensus 591 l~g~ltqEYsin--------p~nCQVLITvPecle--slLlspp~~q~~cerIRyiIfDEVH~iG~~----ed~l~--~E 654 (1330)
T KOG0949|consen 591 LLGDLTQEYSIN--------PWNCQVLITVPECLE--SLLLSPPHHQKFCERIRYIIFDEVHLIGNE----EDGLL--WE 654 (1330)
T ss_pred hHhhhhHHhcCC--------chhceEEEEchHHHH--HHhcCchhhhhhhhcceEEEechhhhcccc----ccchH--HH
Confidence 344443332221 137899999999984 223221223344567999999999999542 11111 11
Q ss_pred hhccCCCCCEEEEeeccchh
Q 001155 543 LKQKFPNTPVLALTATATAS 562 (1136)
Q Consensus 543 l~~~~p~~~iv~LSAT~~~~ 562 (1136)
..-..-.+|+++||||..+.
T Consensus 655 qll~li~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 655 QLLLLIPCPFLVLSATIGNP 674 (1330)
T ss_pred HHHHhcCCCeeEEecccCCH
Confidence 11122368999999998775
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.1e-17 Score=183.60 Aligned_cols=280 Identities=20% Similarity=0.243 Sum_probs=186.0
Q ss_pred CCCHHHHHHHHHHH----CCCcEEEEccCCChHHHH-HH--hhhhhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe
Q 001155 393 SFRPNQREIINATM----SGHDVFVLMPTGGGKSLT-YQ--LPALICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL 463 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~-y~--LpaL~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L 463 (1136)
+|++.|+.+-+.++ +.+++||.|-||+|||.. |+ -.++..++++.+.+|....+.+...+|.+. ++.+.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 69999999888765 467999999999999975 33 334566899999999999999999999875 6889999
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGIL 543 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l 543 (1136)
+|+..... ..+++|+|..+|.+ +.+.++++||||+|. +.|..+-..--.+
T Consensus 177 yg~S~~~f-------------r~plvVaTtHQLlr------------Fk~aFD~liIDEVDA-----FP~~~d~~L~~Av 226 (441)
T COG4098 177 YGDSDSYF-------------RAPLVVATTHQLLR------------FKQAFDLLIIDEVDA-----FPFSDDQSLQYAV 226 (441)
T ss_pred ecCCchhc-------------cccEEEEehHHHHH------------HHhhccEEEEecccc-----ccccCCHHHHHHH
Confidence 99866432 46799999988841 123389999999998 4566543221122
Q ss_pred h-ccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-----------h------hHHHHHHHHHh----
Q 001155 544 K-QKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-----------M------DCEKVAERLQV---- 601 (1136)
Q Consensus 544 ~-~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-----------~------~~e~lae~L~~---- 601 (1136)
. ..-+.-.++.||||+++....++..- -...+....-|.+..+. . ...++..+|..
T Consensus 227 ~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~ 304 (441)
T COG4098 227 KKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKT 304 (441)
T ss_pred HHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhc
Confidence 2 22345678999999999877666431 01011111111111110 0 11123333332
Q ss_pred ----cccccchhhHHHHHHHH-hhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC
Q 001155 602 ----GLSYGHFFLLKEFYVVS-LECG-HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 675 (1136)
Q Consensus 602 ----~l~~~~~~~~~~~~~~l-~~~g-~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~ 675 (1136)
+++...+.........+ ...+ ..++..|+. ...|.+..++|++|++.+||+|.++++|+.+|+|++++...-
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae 382 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE 382 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCC
Confidence 12222222223333222 1222 345777876 568999999999999999999999999999999999874433
Q ss_pred C--CCHhHHHHHhcccCCCCC-CcEEEEEecccc
Q 001155 676 P--KSIEGYHQECGRAGRDGQ-RSSCVLYYSYSD 706 (1136)
Q Consensus 676 P--~Sie~YiQriGRAGR~G~-~g~~il~~~~~D 706 (1136)
- .+-+..+|..||+||.-. +.--++||..+-
T Consensus 383 h~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 383 HRVFTESALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred cccccHHHHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 3 578899999999999654 333355555443
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3.3e-17 Score=202.29 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=103.4
Q ss_pred CCCCC---CHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHHc----CCC
Q 001155 390 GNHSF---RPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQA----NIP 459 (1136)
Q Consensus 390 G~~~l---rpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~----gI~ 459 (1136)
||..+ +|+|.++++.++.++++++.|+||+|||++|.||++.. +..++||+|+++|+.+..+.+..+ |+.
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLs 165 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLT 165 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 78777 99999999999999999999999999999999999854 345899999999998776666553 799
Q ss_pred eEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhh-hchHHHHHHHHhhhh----hhccceeeeecccccc
Q 001155 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV-AKSDVLLRQLESLNA----RELLARIVIDEAHCVS 527 (1136)
Q Consensus 460 v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL-~~~d~l~r~l~~l~~----~~~l~lVVIDEAH~ls 527 (1136)
+.++.|+.+...+...+ .++|+|+||++| . |++.+....+.. ...+.++||||||.|+
T Consensus 166 V~~i~GG~~~~eq~~~y--------~~DIVygTPgRLgf--DyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 166 TGVLVSGSPLEKRKEIY--------QCDVVYGTASEFGF--DYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred EEEEeCCCCHHHHHHHc--------CCCEEEECCChhHH--HHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 99999999887765432 589999999999 5 666554222221 1347899999999985
No 104
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.75 E-value=4.5e-17 Score=192.82 Aligned_cols=292 Identities=23% Similarity=0.243 Sum_probs=205.3
Q ss_pred CCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHH--Hhhhhh----CCCcEEEEccChhhHHHHHHHHHHc--CCC
Q 001155 392 HSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTY--QLPALI----CPGITLVISPLVSLIQDQIMHLLQA--NIP 459 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y--~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~--gI~ 459 (1136)
..++++|.+.++.+. +|-|.|+.-..|-|||+.. +|..+. ..|.-|||+|.-.|- .|++++.+. +++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCCCcc
Confidence 479999999999875 5778999999999999753 233332 268899999998775 499999988 899
Q ss_pred eEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhh
Q 001155 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG 539 (1136)
Q Consensus 460 v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~ 539 (1136)
+.++.|+. .++....+.+.. .+..+|+|+|.|+..+...+.+ .+ ..+++||||||+|-... ..
T Consensus 245 ~~~~~Gdk--~eR~~~~r~~~~-~~~fdV~iTsYEi~i~dk~~lk---~~----~W~ylvIDEaHRiKN~~-------s~ 307 (971)
T KOG0385|consen 245 VVVYHGDK--EERAALRRDIML-PGRFDVCITSYEIAIKDKSFLK---KF----NWRYLVIDEAHRIKNEK-------SK 307 (971)
T ss_pred eEEEeCCH--HHHHHHHHHhhc-cCCCceEeehHHHHHhhHHHHh---cC----CceEEEechhhhhcchh-------hH
Confidence 99999985 444444444443 3589999999999865322222 22 36899999999985422 34
Q ss_pred hhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc------CCCCchh------------------------
Q 001155 540 LGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS------FNRPNLW------------------------ 589 (1136)
Q Consensus 540 L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s------~~r~nl~------------------------ 589 (1136)
|..+.+.|.....+++|+|+-.+....+...|++.-|.+|... |...+..
T Consensus 308 L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~d 387 (971)
T KOG0385|consen 308 LSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSD 387 (971)
T ss_pred HHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHh
Confidence 5566777777788999999988888888887776666555431 1111110
Q ss_pred --------------------------------------------hhHHHHHHHHHhc-----ccc---------------
Q 001155 590 --------------------------------------------MDCEKVAERLQVG-----LSY--------------- 605 (1136)
Q Consensus 590 --------------------------------------------~~~e~lae~L~~~-----l~~--------------- 605 (1136)
.....+.-.|+.. ++.
T Consensus 388 Ve~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv 467 (971)
T KOG0385|consen 388 VEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV 467 (971)
T ss_pred HhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH
Confidence 0000011111110 000
Q ss_pred ---cchhhHHHHHHHHhhc------------------------CCeEEEEcCCCCHHHHHHHHHHHhcC---CceEEEee
Q 001155 606 ---GHFFLLKEFYVVSLEC------------------------GHKAAFYHGSIDPAQRAFVQKQWSKD---EINIICAT 655 (1136)
Q Consensus 606 ---~~~~~~~~~~~~l~~~------------------------g~~v~~~Hagm~~~dR~~i~~~F~~g---~i~VLVAT 655 (1136)
|....++.+...+.+. ++...-+.|.++.++|...++.|... ..-.|++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 0001122233333334 44455558999999999999999864 34468999
Q ss_pred ccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEE
Q 001155 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 656 ~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~ 701 (1136)
.|.|.|||+...++||.||..+++..-+|..-||+|.|+...+++|
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 9999999999999999999999999999999999999997776665
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3.5e-16 Score=193.12 Aligned_cols=314 Identities=18% Similarity=0.114 Sum_probs=196.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH-
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ- 455 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~- 455 (1136)
.+.++.+..+|+. +++.|.-.--.+..| -|+.|+||.|||++|.||++.. +..+.||+|+..|+.+-.+.+..
T Consensus 70 ~vrEaa~R~lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 70 TVREASKRVFEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred HHHHHHHHHhCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4566777787864 466776554444455 4999999999999999999854 55699999999998865555543
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh-h--hhhhccceeeeecccccccc
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES-L--NARELLARIVIDEAHCVSQW 529 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~-l--~~~~~l~lVVIDEAH~ls~w 529 (1136)
+|+.+.++.++++...+... -.++|+|+||..+. .|.+...+.. . .....+.++||||||.|+--
T Consensus 147 ~~~lGlsv~~i~~~~~~~~r~~~--------Y~~dI~YgT~~e~g-fDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD 217 (908)
T PRK13107 147 FEFLGLTVGINVAGLGQQEKKAA--------YNADITYGTNNEFG-FDYLRDNMAFSPQERVQRPLHYALIDEVDSILID 217 (908)
T ss_pred HHhcCCeEEEecCCCCHHHHHhc--------CCCCeEEeCCCccc-chhhhccCccchhhhhccccceeeecchhhhccc
Confidence 39999999998886443332 26899999999982 1665554221 1 11245889999999988521
Q ss_pred ---------CC--CCccchhhhhhhhccC--------------------CCCCEEEEeeccchhhH--------------
Q 001155 530 ---------GH--DFRPDYQGLGILKQKF--------------------PNTPVLALTATATASVK-------------- 564 (1136)
Q Consensus 530 ---------Gh--dfR~~y~~L~~l~~~~--------------------p~~~iv~LSAT~~~~v~-------------- 564 (1136)
|. .-...|..+..+...+ .....+-||-.-...+.
T Consensus 218 EArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~ 297 (908)
T PRK13107 218 EARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDS 297 (908)
T ss_pred cCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccc
Confidence 10 0111222222111111 12223334321111100
Q ss_pred ----------HHHHHHhc------Cc--------ceEEecccCCCCchh-------------------------------
Q 001155 565 ----------EDVVQALG------LV--------NCIIFRQSFNRPNLW------------------------------- 589 (1136)
Q Consensus 565 ----------~dI~~~L~------l~--------~~~i~~~s~~r~nl~------------------------------- 589 (1136)
..+.+.|. -. ...++.....|.-.-
T Consensus 298 l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~ 377 (908)
T PRK13107 298 LYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITF 377 (908)
T ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehH
Confidence 11111110 00 011111111111000
Q ss_pred -------------------------------------------------------hhHHHHHHHHHh--------ccccc
Q 001155 590 -------------------------------------------------------MDCEKVAERLQV--------GLSYG 606 (1136)
Q Consensus 590 -------------------------------------------------------~~~e~lae~L~~--------~l~~~ 606 (1136)
.....+++.+.. ++...
T Consensus 378 QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~ 457 (908)
T PRK13107 378 QNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTV 457 (908)
T ss_pred HHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 001111111111 11222
Q ss_pred chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC--------------------
Q 001155 607 HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD-------------------- 666 (1136)
Q Consensus 607 ~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~-------------------- 666 (1136)
.....+.+...+...|+....+||.++..+|..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 458 sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~ 535 (908)
T PRK13107 458 SIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKA 535 (908)
T ss_pred cHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHH
Confidence 223334555667788999999999999999999999999998 9999999999999862
Q ss_pred -----------------ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 667 -----------------VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 667 -----------------V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
=-+||-...+.|-.-=-|-.|||||.|.+|.+..|.+..|-
T Consensus 536 ~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 536 KIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 13688888888988889999999999999999999998774
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.71 E-value=9.5e-17 Score=201.86 Aligned_cols=301 Identities=21% Similarity=0.193 Sum_probs=191.2
Q ss_pred CCHHHHHHHHHHHC---CC-cEEEEccCCChHHHHHHhhhhhC-------CCcEEEEccChhhHHHHHHHHHHcC---CC
Q 001155 394 FRPNQREIINATMS---GH-DVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMHLLQAN---IP 459 (1136)
Q Consensus 394 lrpiQ~eaI~~il~---g~-dvLV~APTGsGKTl~y~LpaL~~-------~g~~LVIsPtraL~~dqv~~L~~~g---I~ 459 (1136)
.++.|..++..++. .. .+++.||||+|||.+.+++++.. ..+++++.|++++++++++.+.... ..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 47889999988874 34 78999999999999999888732 5689999999999999999998752 11
Q ss_pred eEE-ecCCCCHHHHHHH-----HH-HH--hcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccC
Q 001155 460 ATF-LSGNMEWTEQQEI-----LR-EL--NSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530 (1136)
Q Consensus 460 v~~-L~g~~~~~~~~~~-----l~-~l--~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wG 530 (1136)
... +.|.......... .. .+ .....-..++++||-.+............ ...-..+++|+||+|.+.+-.
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LALLLTSLVILDEVHLYADET 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HHHHHhhchhhccHHhhcccc
Confidence 111 2332221111100 00 00 00012445667777666421000000111 111125889999999975421
Q ss_pred CCCccchhhhhhhhcc--CCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc----CCCCchh--------hh-----
Q 001155 531 HDFRPDYQGLGILKQK--FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS----FNRPNLW--------MD----- 591 (1136)
Q Consensus 531 hdfR~~y~~L~~l~~~--~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s----~~r~nl~--------~~----- 591 (1136)
....+..+... .-+.++|++|||+|+...+.+...++.........+ .+.+.+. ..
T Consensus 355 -----~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 355 -----MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred -----hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 11112222222 237899999999999999988888765544433222 1222211 00
Q ss_pred HHHHHHHH----HhcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHh----cCCceEEEeecccccccc
Q 001155 592 CEKVAERL----QVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWS----KDEINIICATVAFGMGIN 663 (1136)
Q Consensus 592 ~e~lae~L----~~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~----~g~i~VLVAT~alg~GID 663 (1136)
.+.+.+.+ +.++..+.+....++|..+...+..+..+|+.+...+|.+.++.+. .+...|+|||.+.+.|||
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 00111111 1234445555667888888877778999999999999998888644 578899999999999999
Q ss_pred CCCccEEEEcCCCCCHhHHHHHhcccCCCC--CCcEEEEEec
Q 001155 664 KPDVRFVIHHSLPKSIEGYHQECGRAGRDG--QRSSCVLYYS 703 (1136)
Q Consensus 664 lP~V~~VIh~d~P~Sie~YiQriGRAGR~G--~~g~~il~~~ 703 (1136)
+ +.+++|-=-. .+.+.+||+||++|.| ..|..+++-.
T Consensus 510 i-dfd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 510 I-DFDVLITELA--PIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred c-ccCeeeecCC--CHHHHHHHHHHHhhcccccCCceeEeec
Confidence 8 5777765444 4889999999999999 4666666543
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.70 E-value=2.9e-15 Score=185.22 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=91.2
Q ss_pred cchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcC-----CCCCHh
Q 001155 606 GHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHS-----LPKSIE 680 (1136)
Q Consensus 606 ~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d-----~P~Sie 680 (1136)
........+...+...|+.+..+|++|+..+|..+++.|+.|++.|||||+.+++|+|+|++++||+++ .|.+..
T Consensus 450 ~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~ 529 (655)
T TIGR00631 450 LTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSER 529 (655)
T ss_pred CCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHH
Confidence 344456677777888899999999999999999999999999999999999999999999999999988 799999
Q ss_pred HHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 681 GYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 681 ~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
.|+||+|||||. ..|.+++|++..+.
T Consensus 530 ~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 530 SLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 999999999998 68999999876554
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.3e-15 Score=187.16 Aligned_cols=308 Identities=18% Similarity=0.171 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHCC----CcEEEEccCCChHHHHHHhh---hhhCCCcEEEEccChhhHHHHHHHHHHc-CCCeEEe
Q 001155 392 HSFRPNQREIINATMSG----HDVFVLMPTGGGKSLTYQLP---ALICPGITLVISPLVSLIQDQIMHLLQA-NIPATFL 463 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g----~dvLV~APTGsGKTl~y~Lp---aL~~~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L 463 (1136)
..+++-|..++..+... ...++-+.||||||.+|+=. +|..+..+||++|-++|..|.+.+|..+ |.++.++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 35899999999998754 56999999999999998633 3455778999999999999999999875 9999999
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCC-CCccchhhhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGH-DFRPDYQGLGI 542 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGh-dfR~~y~~L~~ 542 (1136)
+++.+..++...+..... |..+|+|+|=--+. ..+.++++|||||=|--+=-.. ..|-.-+.+..
T Consensus 277 HS~Ls~~er~~~W~~~~~--G~~~vVIGtRSAlF------------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 277 HSGLSPGERYRVWRRARR--GEARVVIGTRSALF------------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred cccCChHHHHHHHHHHhc--CCceEEEEechhhc------------CchhhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 999999999988888776 89999999876552 2344589999999997531111 13334467888
Q ss_pred hhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCC---CCchh-----------------hhHHHHHHHHHh-
Q 001155 543 LKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFN---RPNLW-----------------MDCEKVAERLQV- 601 (1136)
Q Consensus 543 l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~---r~nl~-----------------~~~e~lae~L~~- 601 (1136)
++....++|+|+=|||++-+....+.+ +......+..-+. .|++. ...+.+.+.|..
T Consensus 343 ~Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~g 420 (730)
T COG1198 343 LRAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERG 420 (730)
T ss_pred HHHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcC
Confidence 888889999999999988765544411 1111111111111 11110 111222222221
Q ss_pred ---cccc--------------cchhh----------------------------------------------HHHHHHHH
Q 001155 602 ---GLSY--------------GHFFL----------------------------------------------LKEFYVVS 618 (1136)
Q Consensus 602 ---~l~~--------------~~~~~----------------------------------------------~~~~~~~l 618 (1136)
+++. +.+.. ...+...+
T Consensus 421 eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL 500 (730)
T COG1198 421 EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEEL 500 (730)
T ss_pred CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHH
Confidence 0000 00000 00011111
Q ss_pred h--hcCCeEEEEcCCCCHH--HHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC------------CHhHH
Q 001155 619 L--ECGHKAAFYHGSIDPA--QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK------------SIEGY 682 (1136)
Q Consensus 619 ~--~~g~~v~~~Hagm~~~--dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~------------Sie~Y 682 (1136)
. --+.++..+.++.+.. .-+..++.|.+|+++|||.|.+++.|.|+|++..|...|... ...-+
T Consensus 501 ~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll 580 (730)
T COG1198 501 KRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLL 580 (730)
T ss_pred HHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHH
Confidence 0 1245566666666543 346788999999999999999999999999999988555443 34467
Q ss_pred HHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 683 HQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 683 iQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
.|-.|||||.+.+|..++=+...|-..+..++.
T Consensus 581 ~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 581 MQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 899999999999999998877666655555554
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.7e-16 Score=195.59 Aligned_cols=286 Identities=19% Similarity=0.196 Sum_probs=175.1
Q ss_pred HHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHHHHHHHHHHc-CCCeEEecCCC-C
Q 001155 397 NQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMHLLQA-NIPATFLSGNM-E 468 (1136)
Q Consensus 397 iQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~~-~ 468 (1136)
...+++.++..+.-++|++|||||||. ++|-.+. .+.+++.=|.|-=+.....++.+. |.+++...|=. -
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR 131 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR 131 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE
Confidence 344556666678889999999999997 4554432 345555557763344444444332 43322222110 0
Q ss_pred HHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchh--hhhhhhcc
Q 001155 469 WTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ--GLGILKQK 546 (1136)
Q Consensus 469 ~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~--~L~~l~~~ 546 (1136)
.+... ...++|-|+|.+.|. +.+..-.....+++|||||+|.=+ ...++. .+..+...
T Consensus 132 fe~~~---------s~~Trik~mTdGiLl------rei~~D~~Ls~ys~vIiDEaHERS-----l~tDilLgllk~~~~~ 191 (845)
T COG1643 132 FESKV---------SPRTRIKVMTDGILL------REIQNDPLLSGYSVVIIDEAHERS-----LNTDILLGLLKDLLAR 191 (845)
T ss_pred eeccC---------CCCceeEEeccHHHH------HHHhhCcccccCCEEEEcchhhhh-----HHHHHHHHHHHHHHhh
Confidence 00000 137889999999885 333333345568999999999732 222221 12333333
Q ss_pred CC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh--------h-hHHHHHHHHHhcccc--c-------c
Q 001155 547 FP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW--------M-DCEKVAERLQVGLSY--G-------H 607 (1136)
Q Consensus 547 ~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~--------~-~~e~lae~L~~~l~~--~-------~ 607 (1136)
.+ +.++|.+|||+... .+..+++-.+.+....-..+..++ . ..+.+...+...+.. + .
T Consensus 192 rr~DLKiIimSATld~~---rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG 268 (845)
T COG1643 192 RRDDLKLIIMSATLDAE---RFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPG 268 (845)
T ss_pred cCCCceEEEEecccCHH---HHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCc
Confidence 34 68899999999985 555666532222211111111111 0 111222222221111 1 1
Q ss_pred hhhHHHHHHHHhh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC------
Q 001155 608 FFLLKEFYVVSLE----CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK------ 677 (1136)
Q Consensus 608 ~~~~~~~~~~l~~----~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~------ 677 (1136)
...++.....+.+ ....+..+||.|+.+++.++++--..|.-+|++||++++.+|.+|+|++||.-+.-+
T Consensus 269 ~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 269 QREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 1223333333333 347799999999999999998888888778999999999999999999999655443
Q ss_pred ------------CHhHHHHHhcccCCCCCCcEEEEEeccccHH
Q 001155 678 ------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFI 708 (1136)
Q Consensus 678 ------------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~ 708 (1136)
|-.+..||.|||||. .+|.|+-+|+..++.
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 567889999999998 599999999987764
No 110
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.69 E-value=3.8e-16 Score=184.76 Aligned_cols=280 Identities=17% Similarity=0.175 Sum_probs=170.2
Q ss_pred HHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh------CCCcEEEEccChhhHHHHHHHHHHc-----CCCeEEe--
Q 001155 397 NQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMHLLQA-----NIPATFL-- 463 (1136)
Q Consensus 397 iQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~------~~g~~LVIsPtraL~~dqv~~L~~~-----gI~v~~L-- 463 (1136)
.-.+++..+-.++-++|+++||||||. |+|-++ ..|.+.+.-|.|--+.....+.... |-.|+.-
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR 132 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR 132 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE
Confidence 335667777788889999999999997 555543 2456555556654444333333322 2222211
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchh--hhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ--GLG 541 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~--~L~ 541 (1136)
..+.+ ...++|.|.|-+.|++ .+..-......++|||||||.= ....++. .|+
T Consensus 133 Fed~t--------------s~~TrikymTDG~LLR------E~l~Dp~LskYsvIIlDEAHER-----sl~TDiLlGlLK 187 (674)
T KOG0922|consen 133 FEDST--------------SKDTRIKYMTDGMLLR------EILKDPLLSKYSVIILDEAHER-----SLHTDILLGLLK 187 (674)
T ss_pred ecccC--------------CCceeEEEecchHHHH------HHhcCCccccccEEEEechhhh-----hhHHHHHHHHHH
Confidence 11111 1378899999999853 2222223345799999999972 2333332 244
Q ss_pred hhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC-----------chhhhHHHHHHHHHhc------c-
Q 001155 542 ILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP-----------NLWMDCEKVAERLQVG------L- 603 (1136)
Q Consensus 542 ~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~-----------nl~~~~e~lae~L~~~------l- 603 (1136)
.+.+.-++-+++.+|||+...... ++++.. +++...+...| .....+-...-.+... +
T Consensus 188 ki~~~R~~LklIimSATlda~kfS---~yF~~a-~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILv 263 (674)
T KOG0922|consen 188 KILKKRPDLKLIIMSATLDAEKFS---EYFNNA-PILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILV 263 (674)
T ss_pred HHHhcCCCceEEEEeeeecHHHHH---HHhcCC-ceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEE
Confidence 555566677899999999976433 333221 12211111111 1111111111111100 0
Q ss_pred cccchhhHHHHH----HHHhhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC
Q 001155 604 SYGHFFLLKEFY----VVSLECG----HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 675 (1136)
Q Consensus 604 ~~~~~~~~~~~~----~~l~~~g----~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~ 675 (1136)
+...-..+.... ......+ .-+..+||.|+.+++.++++.-..|.-+|++||++++..|.+|.+++||.-++
T Consensus 264 FLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 264 FLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred EeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 000111111111 1111111 23578999999999999999999999999999999999999999999995443
Q ss_pred CC------------------CHhHHHHHhcccCCCCCCcEEEEEeccccHH
Q 001155 676 PK------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFI 708 (1136)
Q Consensus 676 P~------------------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~ 708 (1136)
.+ |-..-.||.|||||.| +|.|+-+|+..++.
T Consensus 344 vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 344 VKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred eEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 32 6778899999999984 99999999998874
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.66 E-value=3.3e-14 Score=176.84 Aligned_cols=100 Identities=20% Similarity=0.269 Sum_probs=89.4
Q ss_pred chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC-----CCCHhH
Q 001155 607 HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL-----PKSIEG 681 (1136)
Q Consensus 607 ~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~-----P~Sie~ 681 (1136)
.......+...+...|+.+..+||+|+..+|..+++.|+.|.+.|||||+.+++|+|+|++++||+++. |.+...
T Consensus 455 t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~ 534 (652)
T PRK05298 455 TKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 534 (652)
T ss_pred CHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHH
Confidence 334456677777788999999999999999999999999999999999999999999999999998885 789999
Q ss_pred HHHHhcccCCCCCCcEEEEEeccccH
Q 001155 682 YHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 682 YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
|+||+||+||. ..|.+++|++..+.
T Consensus 535 yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 535 LIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred HHHHhccccCC-CCCEEEEEecCCCH
Confidence 99999999996 78999999885443
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.4e-14 Score=177.06 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=195.6
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHH
Q 001155 378 TKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLL 454 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~ 454 (1136)
.+.+.+.+++..|+ .|+..|+--...++.|+..-++||||.|||.--++.++. .+.++++|+||..|+.|.++.+.
T Consensus 68 ~e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 68 YEEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHH
Confidence 35667778888788 799999999999999999999999999999866655553 36799999999999999999998
Q ss_pred HcC-----CCeEE-ecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 455 QAN-----IPATF-LSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 455 ~~g-----I~v~~-L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
++. ..+.+ +++.+...++...+.++.+ |+++|+|+|...|. ..+..+.. -.+++|++|.+|.++.
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~------k~~e~L~~-~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIES--GDFDILITTSQFLS------KRFEELSK-LKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhc--CCccEEEEeHHHHH------hhHHHhcc-cCCCEEEEccHHHHHh
Confidence 872 33333 6788788888888888876 89999999987764 33333332 3489999999998864
Q ss_pred cCC---------CCccc--------------------hhhhhhh---------hccCCCCCEEEEeeccchhh-HHH-HH
Q 001155 529 WGH---------DFRPD--------------------YQGLGIL---------KQKFPNTPVLALTATATASV-KED-VV 568 (1136)
Q Consensus 529 wGh---------dfR~~--------------------y~~L~~l---------~~~~p~~~iv~LSAT~~~~v-~~d-I~ 568 (1136)
-+. .|-.. +.++... ......-.++..|||..+.- +.. ..
T Consensus 218 askNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfR 297 (1187)
T COG1110 218 ASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFR 297 (1187)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHH
Confidence 221 02111 0111111 11122345788899987754 323 33
Q ss_pred HHhcCcceEE------ecccCCCCchhhhHHHHHHHHHhc----ccccch----hhHHHHHHHHhhcCCeEEEEcCCCCH
Q 001155 569 QALGLVNCII------FRQSFNRPNLWMDCEKVAERLQVG----LSYGHF----FLLKEFYVVSLECGHKAAFYHGSIDP 634 (1136)
Q Consensus 569 ~~L~l~~~~i------~~~s~~r~nl~~~~e~lae~L~~~----l~~~~~----~~~~~~~~~l~~~g~~v~~~Hagm~~ 634 (1136)
..|++...-. +......+ ...+++.+.++.+ +.+... ....++...+...|+++..+|++
T Consensus 298 eLlgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~--- 371 (1187)
T COG1110 298 ELLGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE--- 371 (1187)
T ss_pred HHhCCccCccchhhhheeeeeccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc---
Confidence 4455432210 00111111 2234444444432 333322 23567778888999999999984
Q ss_pred HHHHHHHHHHhcCCceEEEeec----cccccccCCC-ccEEEEcCCCC
Q 001155 635 AQRAFVQKQWSKDEINIICATV----AFGMGINKPD-VRFVIHHSLPK 677 (1136)
Q Consensus 635 ~dR~~i~~~F~~g~i~VLVAT~----alg~GIDlP~-V~~VIh~d~P~ 677 (1136)
....++.|..|+++|||... ++-+|||+|. ++++|.|+.|+
T Consensus 372 --~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 --KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred --chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 37789999999999999874 7899999996 89999999995
No 113
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=4.8e-14 Score=174.95 Aligned_cols=96 Identities=21% Similarity=0.174 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC---Ccc-----EEEEcCCCCCHhH
Q 001155 610 LLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP---DVR-----FVIHHSLPKSIEG 681 (1136)
Q Consensus 610 ~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP---~V~-----~VIh~d~P~Sie~ 681 (1136)
....+...+...|+....+|+ .+.+|+..+..|..+...|+|||+++|||+|++ .|. +||++..|.|...
T Consensus 610 ~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Ri 687 (1025)
T PRK12900 610 VSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRI 687 (1025)
T ss_pred HHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHH
Confidence 344555667778999999997 578999999999999999999999999999999 553 4599999999999
Q ss_pred HHHHhcccCCCCCCcEEEEEeccccH
Q 001155 682 YHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 682 YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
|.|++|||||.|.+|.++.|++..|.
T Consensus 688 d~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 688 DRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999999999999999998774
No 114
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.62 E-value=5.5e-15 Score=182.62 Aligned_cols=295 Identities=22% Similarity=0.216 Sum_probs=200.1
Q ss_pred CCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHH---HHh---hhhhCCCcEEEEccChhhHHHHHHHHHH-cCCCe
Q 001155 392 HSFRPNQREIINATM----SGHDVFVLMPTGGGKSLT---YQL---PALICPGITLVISPLVSLIQDQIMHLLQ-ANIPA 460 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~---y~L---paL~~~g~~LVIsPtraL~~dqv~~L~~-~gI~v 460 (1136)
..||.+|.+.++.++ .+.++|+.-..|-|||+. |+- -.+...|..|||+|+-.+.. |.+.|.. ..+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhce
Confidence 689999999998865 688999999999999963 333 33334788999999977765 4444433 48899
Q ss_pred EEecCCCCHHHHHHHHHHHhcc---cCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch
Q 001155 461 TFLSGNMEWTEQQEILRELNSD---YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY 537 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~---~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y 537 (1136)
.++.|+.....-...+.-.... .-.+++|++|.|.+++...++.. + ...+++|||||+|-.- -
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~---i----~w~~~~vDeahrLkN~-------~ 513 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK---I----PWRYLLVDEAHRLKND-------E 513 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc---C----CcceeeecHHhhcCch-------H
Confidence 9999987665544444333221 12589999999998754333222 2 2578999999998421 1
Q ss_pred hhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc------cCC--------------CCchh--------
Q 001155 538 QGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ------SFN--------------RPNLW-------- 589 (1136)
Q Consensus 538 ~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~------s~~--------------r~nl~-------- 589 (1136)
..|-.....|.....+++|.|+-.+....+...|++..|..|.. .++ +|-+.
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 22222344555667899999998888787777776554433321 110 00000
Q ss_pred ----------------------------------------------------hhH-----------HHHH---------H
Q 001155 590 ----------------------------------------------------MDC-----------EKVA---------E 597 (1136)
Q Consensus 590 ----------------------------------------------------~~~-----------e~la---------e 597 (1136)
..| +.+. +
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 000 0000 0
Q ss_pred HHHh-------------------------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCc
Q 001155 598 RLQV-------------------------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSK---DEI 649 (1136)
Q Consensus 598 ~L~~-------------------------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~---g~i 649 (1136)
.|+. +++...+..++.+..++..+++..--+.|.+..+-|+..++.|.. ...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 1111 111122223344445555556666667899999999999999985 577
Q ss_pred eEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEE
Q 001155 650 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 650 ~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~ 701 (1136)
..|+||.|.|.|||+...+.||.||..+++.+=+|...||+|.|++..+-+|
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 8899999999999999999999999999999999999999999987765443
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.61 E-value=2.6e-14 Score=178.32 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHH----C------CCcEEEEccCCChHHHHHHhhhhh-----CCCcEEEEccChhhHHHHHHHHHHcCC
Q 001155 394 FRPNQREIINATM----S------GHDVFVLMPTGGGKSLTYQLPALI-----CPGITLVISPLVSLIQDQIMHLLQANI 458 (1136)
Q Consensus 394 lrpiQ~eaI~~il----~------g~dvLV~APTGsGKTl~y~LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~gI 458 (1136)
++++|..|+..+. . .+..+|.+|||||||++....+.. ...++|||+|+++|..|+...+...+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 6889999998764 2 246999999999999876544322 256899999999999999999998865
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchh
Q 001155 459 PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ 538 (1136)
Q Consensus 459 ~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~ 538 (1136)
.... +..+...-.. .+.. ....|+|+|..++.. .+............--+||+||||+.. .| .+.
T Consensus 319 ~~~~--~~~s~~~L~~---~l~~--~~~~iivtTiQk~~~--~~~~~~~~~~~~~~~~lvIvDEaHrs~-~~-----~~~ 383 (667)
T TIGR00348 319 DCAE--RIESIAELKR---LLEK--DDGGIIITTIQKFDK--KLKEEEEKFPVDRKEVVVIFDEAHRSQ-YG-----ELA 383 (667)
T ss_pred CCCc--ccCCHHHHHH---HHhC--CCCCEEEEEhHHhhh--hHhhhhhccCCCCCCEEEEEEcCcccc-ch-----HHH
Confidence 3211 1111111111 1211 356899999999852 222211111100001279999999842 11 121
Q ss_pred hhhhhhccCCCCCEEEEeeccch
Q 001155 539 GLGILKQKFPNTPVLALTATATA 561 (1136)
Q Consensus 539 ~L~~l~~~~p~~~iv~LSAT~~~ 561 (1136)
..++..+|+..++|||||+-.
T Consensus 384 --~~l~~~~p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 384 --KNLKKALKNASFFGFTGTPIF 404 (667)
T ss_pred --HHHHhhCCCCcEEEEeCCCcc
Confidence 235567889999999999964
No 116
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=2.3e-15 Score=136.17 Aligned_cols=76 Identities=38% Similarity=0.532 Sum_probs=73.5
Q ss_pred HhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCC
Q 001155 618 SLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 618 l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G 693 (1136)
+...++.+..+||+|+..+|..+++.|.+++..|||||+++++|||+|++++||++++|+|+..|.|++||+||.|
T Consensus 3 L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 3 LEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred hHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999987
No 117
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=4.3e-15 Score=170.34 Aligned_cols=315 Identities=17% Similarity=0.073 Sum_probs=199.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc--CC----
Q 001155 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA--NI---- 458 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~--gI---- 458 (1136)
....+..+|.++++.+..|+++++.-.|.+||++||++.+.-. ....++++|+++|++++-+.+.-. -|
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 4567899999999999999999999999999999999887532 456799999999999876544211 01
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc-cCCCCccch
Q 001155 459 PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ-WGHDFRPDY 537 (1136)
Q Consensus 459 ~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~-wGhdfR~~y 537 (1136)
.+.+-..+.........+.+ -+.++||+.|.++.. ..+.+.+......-.+.++++||+|.+.- .|.-....+
T Consensus 363 ~A~V~~~D~~sE~~~~A~~R-----~~~~~~~s~~~~~~s-~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSALKR-----IGLNTLYSHQAEAIS-AALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred cceeecccCCCchhHHHHHh-----cCcceeecCHHHHHH-HHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 11222222222222223332 378899999998853 33444444333334467899999998642 111111223
Q ss_pred hhhhhhhccC---CCCCEEEEeeccchhhHHHHHHHhcCcceEEe--------------cccCCCCchh----hhHHHHH
Q 001155 538 QGLGILKQKF---PNTPVLALTATATASVKEDVVQALGLVNCIIF--------------RQSFNRPNLW----MDCEKVA 596 (1136)
Q Consensus 538 ~~L~~l~~~~---p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~--------------~~s~~r~nl~----~~~e~la 596 (1136)
++|..+..-| .+.+++-.+||....++. .....++.....+ -.+...|.-. ..+.+++
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s 515 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVS 515 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHH
Confidence 4444444433 256677788888776542 3334444432221 1111111111 1122222
Q ss_pred ----HHHHhccc---ccchhhHHH-----HHHHHhhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccc
Q 001155 597 ----ERLQVGLS---YGHFFLLKE-----FYVVSLECG----HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660 (1136)
Q Consensus 597 ----e~L~~~l~---~~~~~~~~~-----~~~~l~~~g----~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~ 660 (1136)
+.+...+. +.....+-+ ....+.+.| -.+..|.||...+||+.|+...-.|++.-+|||++++.
T Consensus 516 ~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALEL 595 (1034)
T KOG4150|consen 516 HLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALEL 595 (1034)
T ss_pred HHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhh
Confidence 22222221 111111111 111111222 13567899999999999999999999999999999999
Q ss_pred cccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEe--ccccHHHHH
Q 001155 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY--SYSDFIRVK 711 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~--~~~D~~~~~ 711 (1136)
|||+..++.|++.++|.|+.++.|..|||||..+++.++.+. .+-|-.++.
T Consensus 596 GIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 596 GIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred ccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhc
Confidence 999999999999999999999999999999999988776654 455544443
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=168.16 Aligned_cols=275 Identities=22% Similarity=0.252 Sum_probs=176.2
Q ss_pred CcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceE
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKL 488 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~I 488 (1136)
+=++-++||.||||.-++ --+......+|.-|++-|+.+.++++.+.||++-.++|.-..... . +....+.
T Consensus 192 kIi~H~GPTNSGKTy~AL-qrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~----~----~~~~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL-QRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVL----D----NGNPAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHHH-HHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecC----C----CCCcccc
Confidence 347788999999997643 223345678999999999999999999999999999986322111 0 0124678
Q ss_pred EEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc--cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHH
Q 001155 489 LYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ--WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKED 566 (1136)
Q Consensus 489 LV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~--wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~d 566 (1136)
+-||.|++.. ...+++.||||+++|.+ .|+.+-... |+.... .+.+.| .+.+..-
T Consensus 263 vScTVEM~sv-------------~~~yeVAViDEIQmm~Dp~RGwAWTrAL--LGl~Ad---EiHLCG-----epsvldl 319 (700)
T KOG0953|consen 263 VSCTVEMVSV-------------NTPYEVAVIDEIQMMRDPSRGWAWTRAL--LGLAAD---EIHLCG-----EPSVLDL 319 (700)
T ss_pred eEEEEEEeec-------------CCceEEEEehhHHhhcCcccchHHHHHH--Hhhhhh---hhhccC-----CchHHHH
Confidence 9999999841 12378899999999965 222111111 111111 111111 2233334
Q ss_pred HHHHhcCcceEEecccCCCCchhhhHHHHHHHHHhccc--ccchhhHHHHH---HHHhhcCC-eEEEEcCCCCHHHHHHH
Q 001155 567 VVQALGLVNCIIFRQSFNRPNLWMDCEKVAERLQVGLS--YGHFFLLKEFY---VVSLECGH-KAAFYHGSIDPAQRAFV 640 (1136)
Q Consensus 567 I~~~L~l~~~~i~~~s~~r~nl~~~~e~lae~L~~~l~--~~~~~~~~~~~---~~l~~~g~-~v~~~Hagm~~~dR~~i 640 (1136)
+.+.+.+....+....+.|-+.....+.+...|..+.. +...+.-+.++ ..+...|. .+++++|+|+++.|..-
T Consensus 320 V~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQ 399 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQ 399 (700)
T ss_pred HHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHH
Confidence 44444443333333333333332222233333432111 00111112222 22334444 49999999999999999
Q ss_pred HHHHhc--CCceEEEeeccccccccCCCccEEEEcCCCC---------CHhHHHHHhcccCCCCC---CcEEEEEecccc
Q 001155 641 QKQWSK--DEINIICATVAFGMGINKPDVRFVIHHSLPK---------SIEGYHQECGRAGRDGQ---RSSCVLYYSYSD 706 (1136)
Q Consensus 641 ~~~F~~--g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~---------Sie~YiQriGRAGR~G~---~g~~il~~~~~D 706 (1136)
...|.+ ++++|||||++.|||+|+ +++.||.|++-+ +.....|..|||||.|. .|.+. -+...|
T Consensus 400 A~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vT-tl~~eD 477 (700)
T KOG0953|consen 400 AALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVT-TLHSED 477 (700)
T ss_pred HHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEE-EeeHhh
Confidence 999998 899999999999999998 899999888764 56788999999999875 45444 445678
Q ss_pred HHHHHHHHhcC
Q 001155 707 FIRVKHMISQG 717 (1136)
Q Consensus 707 ~~~~~~li~~~ 717 (1136)
+..+.+.++..
T Consensus 478 L~~L~~~l~~p 488 (700)
T KOG0953|consen 478 LKLLKRILKRP 488 (700)
T ss_pred HHHHHHHHhCC
Confidence 99999888754
No 119
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=4.3e-14 Score=165.46 Aligned_cols=289 Identities=18% Similarity=0.208 Sum_probs=174.2
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEE-ccChhhHHHHHHHHHH-cCCCeEEe
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVI-SPLVSLIQDQIMHLLQ-ANIPATFL 463 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVI-sPtraL~~dqv~~L~~-~gI~v~~L 463 (1136)
-...++-.+.+.++-..+-+||.+.||||||. |||-.+. +++-|-+ -|.|--+-....+..+ .|++.+--
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 34566778888999999999999999999997 6776543 3443444 4655444434434333 24433211
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch--hhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY--QGLG 541 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y--~~L~ 541 (1136)
.|-. -+ +.+-. ...+-|=|+|-++|.+ -+..-......++|||||||.= ....+. ..+.
T Consensus 342 VGYs---IR---FEdcT--SekTvlKYMTDGmLlR------EfL~epdLasYSViiiDEAHER-----TL~TDILfgLvK 402 (902)
T KOG0923|consen 342 VGYS---IR---FEDCT--SEKTVLKYMTDGMLLR------EFLSEPDLASYSVIIVDEAHER-----TLHTDILFGLVK 402 (902)
T ss_pred cceE---EE---ecccc--CcceeeeeecchhHHH------HHhccccccceeEEEeehhhhh-----hhhhhHHHHHHH
Confidence 1100 00 00000 0256788999999852 2222223345789999999972 122222 1234
Q ss_pred hhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCC--CchhhhHHHHHHHHHh----------------cc
Q 001155 542 ILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNR--PNLWMDCEKVAERLQV----------------GL 603 (1136)
Q Consensus 542 ~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r--~nl~~~~e~lae~L~~----------------~l 603 (1136)
.+...-|+..++..|||+... ....+++ ++-+|.-+-.| ..++..-..-++.+.. .+
T Consensus 403 DIar~RpdLKllIsSAT~DAe---kFS~fFD--dapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDIL 477 (902)
T KOG0923|consen 403 DIARFRPDLKLLISSATMDAE---KFSAFFD--DAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDIL 477 (902)
T ss_pred HHHhhCCcceEEeeccccCHH---HHHHhcc--CCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEE
Confidence 444555888899999999875 3333332 23333322222 2222110000111110 00
Q ss_pred cc----cchhhHH-HHHHHHhhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEc
Q 001155 604 SY----GHFFLLK-EFYVVSLEC-----GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH 673 (1136)
Q Consensus 604 ~~----~~~~~~~-~~~~~l~~~-----g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~ 673 (1136)
.+ ..+...+ .+....... .+-+..+|+.|+.+.+..|++---.|.-+|++||++++..|.+++|.+||.-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 00 0111111 122222222 3457889999999999999999999999999999999999999999999954
Q ss_pred CCCC------------------CHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 674 SLPK------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 674 d~P~------------------Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
++.+ |-.+-.||.|||||.| +|.|+-+|+.-.+
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 4333 5567899999999996 9999999986443
No 120
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=3.4e-14 Score=166.26 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHHHHHHHHHH-cCCCeEEecCC
Q 001155 394 FRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMHLLQ-ANIPATFLSGN 466 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~dqv~~L~~-~gI~v~~L~g~ 466 (1136)
....+.+.+..+-.++-++|++.||||||. |||-.+. .|.+-+--|.|.-+-....++.. .|...+.-.|-
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 345667777777788889999999999997 4444322 45444555777665555555543 23332211110
Q ss_pred CCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch--hhhhhhh
Q 001155 467 MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY--QGLGILK 544 (1136)
Q Consensus 467 ~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y--~~L~~l~ 544 (1136)
. -+.+ +.. ...+.|-|+|-+.|++.. +... .....+.||+||||.=+ ...++ -.|..+.
T Consensus 435 s---IRFE---dvT--~~~T~IkymTDGiLLrEs-L~d~-----~L~kYSviImDEAHERs-----lNtDilfGllk~~l 495 (1042)
T KOG0924|consen 435 S---IRFE---DVT--SEDTKIKYMTDGILLRES-LKDR-----DLDKYSVIIMDEAHERS-----LNTDILFGLLKKVL 495 (1042)
T ss_pred E---EEee---ecC--CCceeEEEeccchHHHHH-hhhh-----hhhheeEEEechhhhcc-----cchHHHHHHHHHHH
Confidence 0 0000 000 036789999999886422 2111 22336889999999732 22222 1233334
Q ss_pred ccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-------hhHHHHHHH-HHhcccc--cch------
Q 001155 545 QKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-------MDCEKVAER-LQVGLSY--GHF------ 608 (1136)
Q Consensus 545 ~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-------~~~e~lae~-L~~~l~~--~~~------ 608 (1136)
..-.+..+|..|||+... .+..++|-.+.+.+..-..+.++. ..++..... +...+.. +.+
T Consensus 496 arRrdlKliVtSATm~a~---kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 496 ARRRDLKLIVTSATMDAQ---KFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred HhhccceEEEeeccccHH---HHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 444578899999999875 455555522222111111111111 111111111 1110000 000
Q ss_pred --------hhHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC
Q 001155 609 --------FLLKEFYVVSL---ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK 677 (1136)
Q Consensus 609 --------~~~~~~~~~l~---~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~ 677 (1136)
..+.+....+. ..+..+..+++.|+..-+.++++.-..|.-++||||++++..+.+|.+++||..+..+
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 01111111111 2367899999999999999999998899999999999999999999999999655433
Q ss_pred ------------------CHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcC
Q 001155 678 ------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVA 719 (1136)
Q Consensus 678 ------------------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~ 719 (1136)
|-.+--||.|||||.| +|.|+-+|+...+ ...|+....|
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay--~~eml~stvP 709 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY--KNEMLPSTVP 709 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH--HhhcccCCCc
Confidence 5567789999999985 9999999987543 3345544444
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.57 E-value=4.8e-14 Score=146.48 Aligned_cols=168 Identities=31% Similarity=0.416 Sum_probs=118.3
Q ss_pred hCCCCCCHHHHHHHHHHHCC-CcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHcC-----
Q 001155 389 FGNHSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQAN----- 457 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~il~g-~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~g----- 457 (1136)
+++..++++|.+++..++.. +.+++++|||+|||.++..+++.. ...+||++|+.+++.++...+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 46788999999999999988 999999999999999888777643 2679999999999999999888764
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch
Q 001155 458 IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY 537 (1136)
Q Consensus 458 I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y 537 (1136)
.....+.+... ..... .+.. ...+++++|++.+. +.+.... .....++++||||+|.+..+. +...+
T Consensus 84 ~~~~~~~~~~~-~~~~~---~~~~--~~~~v~~~t~~~l~--~~~~~~~---~~~~~~~~iIiDE~h~~~~~~--~~~~~ 150 (201)
T smart00487 84 KVVGLYGGDSK-REQLR---KLES--GKTDILVTTPGRLL--DLLENDL---LELSNVDLVILDEAHRLLDGG--FGDQL 150 (201)
T ss_pred EEEEEeCCcch-HHHHH---HHhc--CCCCEEEeChHHHH--HHHHcCC---cCHhHCCEEEEECHHHHhcCC--cHHHH
Confidence 23334444332 22222 2221 23499999999885 2222211 123458899999999987532 33333
Q ss_pred hhhhhhhcc-CCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 538 QGLGILKQK-FPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 538 ~~L~~l~~~-~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
.. +... .+..+++++|||+++.........+.
T Consensus 151 ~~---~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 151 EK---LLKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HH---HHHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 33 2232 35788999999999887666665554
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.57 E-value=4.5e-14 Score=175.33 Aligned_cols=288 Identities=20% Similarity=0.167 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHCCCcEEEEccCCChHHHH---HHhhhhhC--CC-cEEEEccChhhHHHHHHHHHHc-----CCCeEE
Q 001155 394 FRPNQREIINATMSGHDVFVLMPTGGGKSLT---YQLPALIC--PG-ITLVISPLVSLIQDQIMHLLQA-----NIPATF 462 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~---y~LpaL~~--~g-~~LVIsPtraL~~dqv~~L~~~-----gI~v~~ 462 (1136)
....+.++++++.+.+.++|++.||+|||.- |+|--... .. .+|+--|.|--+-...++.... |-.|+.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 4667888899999999999999999999973 33333222 12 3444447655444444444332 322221
Q ss_pred ecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhh--h
Q 001155 463 LSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG--L 540 (1136)
Q Consensus 463 L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~--L 540 (1136)
-..-.. . . .....++|||.+.|+ +.+........+..||+||+|.=+ ...++.. +
T Consensus 254 qvrl~~---------~-~--s~~t~L~fcTtGvLL------r~L~~~~~l~~vthiivDEVHER~-----i~~DflLi~l 310 (924)
T KOG0920|consen 254 QVRLES---------K-R--SRETRLLFCTTGVLL------RRLQSDPTLSGVTHIIVDEVHERS-----INTDFLLILL 310 (924)
T ss_pred EEeeec---------c-c--CCceeEEEecHHHHH------HHhccCcccccCceeeeeeEEEcc-----CCcccHHHHH
Confidence 111000 0 0 025789999999874 444444455669999999999843 3344432 3
Q ss_pred hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhhHHHHH------------------------
Q 001155 541 GILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVA------------------------ 596 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~~e~la------------------------ 596 (1136)
..+....|+.++++||||+..... ..+++ ..+++...++..|......|.+.
T Consensus 311 k~lL~~~p~LkvILMSAT~dae~f---s~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~ 386 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLDAELF---SDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLA 386 (924)
T ss_pred HHHhhhCCCceEEEeeeecchHHH---HHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccc
Confidence 445555688999999999986432 22332 12222222222222211111111
Q ss_pred ---------------HHHH---hccccc-------chhhHHHHHHHHhh-------cCCeEEEEcCCCCHHHHHHHHHHH
Q 001155 597 ---------------ERLQ---VGLSYG-------HFFLLKEFYVVSLE-------CGHKAAFYHGSIDPAQRAFVQKQW 644 (1136)
Q Consensus 597 ---------------e~L~---~~l~~~-------~~~~~~~~~~~l~~-------~g~~v~~~Hagm~~~dR~~i~~~F 644 (1136)
+.+. ..-..+ ....+...+..+.. ..+-+...|+.|+..+++.|+..-
T Consensus 387 ~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 387 RLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred cchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 1111 100001 01112222222211 235678899999999999999999
Q ss_pred hcCCceEEEeeccccccccCCCccEEE--------EcCCCC----------CHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 645 SKDEINIICATVAFGMGINKPDVRFVI--------HHSLPK----------SIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 645 ~~g~i~VLVAT~alg~GIDlP~V~~VI--------h~d~P~----------Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
..|..+||+||++++.+|.++||-+|| .||.-. |-.+-.||.|||||. .+|.|+-+|+...
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999999999999999999 444433 445678999999998 7999999998876
Q ss_pred HHH
Q 001155 707 FIR 709 (1136)
Q Consensus 707 ~~~ 709 (1136)
+..
T Consensus 546 ~~~ 548 (924)
T KOG0920|consen 546 YEK 548 (924)
T ss_pred hhh
Confidence 543
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.54 E-value=3.6e-13 Score=172.79 Aligned_cols=78 Identities=27% Similarity=0.435 Sum_probs=60.2
Q ss_pred hCCCCCCHHHHHHHHH----HHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHH----HHHc-
Q 001155 389 FGNHSFRPNQREIINA----TMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMH----LLQA- 456 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~----il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~----L~~~- 456 (1136)
.||. +|+.|.+.+.. +..++++++.||||+|||++|++|++.. +.++||.+||++|..|.+.. +.+.
T Consensus 242 ~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 3776 79999986664 4468899999999999999999999864 56899999999998877552 3322
Q ss_pred C--CCeEEecCCC
Q 001155 457 N--IPATFLSGNM 467 (1136)
Q Consensus 457 g--I~v~~L~g~~ 467 (1136)
+ ++++.+.|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 6666666654
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=7.7e-13 Score=160.60 Aligned_cols=137 Identities=18% Similarity=0.123 Sum_probs=106.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.-+.++.+..+|+. +++.|.-..-.++.|+ |+.|.||.|||+++.+|++.. +..+.||+|+--|+.+-...+..
T Consensus 65 AvvREa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 65 AIAREAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HHHHHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHH
Confidence 35667777888874 6889999988888875 789999999999999998854 77899999999999877766654
Q ss_pred ----cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhh---hhhhccceeeeecccccc
Q 001155 456 ----ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL---NARELLARIVIDEAHCVS 527 (1136)
Q Consensus 456 ----~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l---~~~~~l~lVVIDEAH~ls 527 (1136)
+|+.++++.++++..++...+ .++|+|+|...+. .|.+...+... .....+.+.||||+|.++
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY--------~~DItYgTn~e~g-FDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAY--------ACDVTYASVNEIG-FDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHH--------cCCCEEcCCcccc-cccchhhhccChHhhcCCccceeeecchhhhe
Confidence 399999999998877766554 6789999998874 35555554311 112347899999999885
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.1e-12 Score=151.50 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=108.3
Q ss_pred CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-----hhHHHHHHHHHhcccc--------cchhhHHHHH
Q 001155 549 NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-----MDCEKVAERLQVGLSY--------GHFFLLKEFY 615 (1136)
Q Consensus 549 ~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-----~~~e~lae~L~~~l~~--------~~~~~~~~~~ 615 (1136)
..+++.+|||+.+.-.+.-.. .+...++-.++.--|.+. -.++.+...++..... -......++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT 463 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLT 463 (663)
T ss_pred cCCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHH
Confidence 357899999998864331110 111111111222222111 2334444444432222 2233456778
Q ss_pred HHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC-----CHhHHHHHhcccC
Q 001155 616 VVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK-----SIEGYHQECGRAG 690 (1136)
Q Consensus 616 ~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~-----Sie~YiQriGRAG 690 (1136)
.++.+.|+++.++|+++..-+|.++++..+.|.++|||.-+.+-.|+|+|.|.+|...|..+ |-.+.+|-+|||.
T Consensus 464 ~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAA 543 (663)
T COG0556 464 EYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 (663)
T ss_pred HHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999888765 8899999999999
Q ss_pred CCCCCcEEEEEec
Q 001155 691 RDGQRSSCVLYYS 703 (1136)
Q Consensus 691 R~G~~g~~il~~~ 703 (1136)
|. -.|.+|+|.+
T Consensus 544 RN-~~GkvIlYAD 555 (663)
T COG0556 544 RN-VNGKVILYAD 555 (663)
T ss_pred hc-cCCeEEEEch
Confidence 96 5788888753
No 126
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=99.53 E-value=1.1e-14 Score=140.15 Aligned_cols=105 Identities=33% Similarity=0.538 Sum_probs=86.4
Q ss_pred chhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccCCcccCCHHHHHHHHHHHHHhcchhhhhhccc
Q 001155 795 DVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSD 874 (1136)
Q Consensus 795 d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~gk~~s~~~~~~li~~l~~~g~L~e~~~~~~ 874 (1136)
|+|++|+.+++||.++++++|..+++|+|||++++++.+++++++++||.||++++.+|++++++|+.+|||.+....
T Consensus 1 D~T~~a~~il~~V~~~~~~~~~~~ivdvlrGs~~~~i~~~~~~~l~~yG~gk~~~~~~~~~li~~Li~~g~L~~~~~~-- 78 (106)
T PF09382_consen 1 DVTEEAKKILSCVQRLKQRFGLSQIVDVLRGSKSKKIREKGHDQLPTYGIGKDMSKDDWERLIRQLILEGYLSEDNGG-- 78 (106)
T ss_dssp E-HHHHHHHHHHHHHTTT-S-HHHHHHHHTT-S-CCCHHTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEEECC--
T ss_pred ChHHHHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhcCCCcCcccCCcccCCHHHHHHHHHHHHHcCCceecCCc--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999664321
Q ss_pred CCCceeeEEeeccccccccccCceeEEEecc
Q 001155 875 VYGSVSSVLKVNQSKAHNLIIGRQNVVLRFP 905 (1136)
Q Consensus 875 ~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p 905 (1136)
..+++|++++ +++.+++|..+|.|.++
T Consensus 79 ---~~~~~l~~~~-~~~~~l~g~~~v~l~~~ 105 (106)
T PF09382_consen 79 ---FAYPYLKLTP-KGKELLNGKQKVELSED 105 (106)
T ss_dssp ---CCTEEEEE-G-GGHHHHCTTS--EEEEE
T ss_pred ---ccccEEEECH-HHHHHHCCCceEEEEec
Confidence 2335899985 68999999999998765
No 127
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.51 E-value=6.8e-13 Score=158.51 Aligned_cols=297 Identities=22% Similarity=0.234 Sum_probs=196.1
Q ss_pred CCCCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHH--HHhhhhhC---CCcEEEEccChhhHHHHHHHHHHc--CC
Q 001155 390 GNHSFRPNQREIINATM----SGHDVFVLMPTGGGKSLT--YQLPALIC---PGITLVISPLVSLIQDQIMHLLQA--NI 458 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~--y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~--gI 458 (1136)
|++ |.++|.-.+++++ .+-+.|+.-..|-|||.. +.+..|.. .|.-|||+|.-.| ..|.++|.+. .+
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL 474 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce
Confidence 443 8999999999864 356789999999999963 33444433 6789999999666 5699999988 57
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchh
Q 001155 459 PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ 538 (1136)
Q Consensus 459 ~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~ 538 (1136)
++...+|.. .++.++...+......++||++|......+..-...+ ....+.++|+||+|.|-..+. .-|+
T Consensus 475 ~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsfl----k~~~~n~viyDEgHmLKN~~S---eRy~ 545 (941)
T KOG0389|consen 475 KVEPYYGSQ--DERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFL----KNQKFNYVIYDEGHMLKNRTS---ERYK 545 (941)
T ss_pred EEEeccCcH--HHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHH----HhccccEEEecchhhhhccch---HHHH
Confidence 777788875 5555555556665568999999999886432222222 224589999999999865442 1233
Q ss_pred hhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCC----------------------------------
Q 001155 539 GLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFN---------------------------------- 584 (1136)
Q Consensus 539 ~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~---------------------------------- 584 (1136)
.|.. .+....++||+|+-.+....+...|.+.-+.+|..+..
T Consensus 546 ~LM~----I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~ 621 (941)
T KOG0389|consen 546 HLMS----INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK 621 (941)
T ss_pred Hhcc----ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh
Confidence 3322 23556789999976665554544443322222211100
Q ss_pred ------------------------------------------------------CCc--hh-------------------
Q 001155 585 ------------------------------------------------------RPN--LW------------------- 589 (1136)
Q Consensus 585 ------------------------------------------------------r~n--l~------------------- 589 (1136)
+++ +.
T Consensus 622 PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~d 701 (941)
T KOG0389|consen 622 PFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTD 701 (941)
T ss_pred HHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccH
Confidence 000 00
Q ss_pred -----------------------------------------------------------hhHHHHHHHHHhcccccc---
Q 001155 590 -----------------------------------------------------------MDCEKVAERLQVGLSYGH--- 607 (1136)
Q Consensus 590 -----------------------------------------------------------~~~e~lae~L~~~l~~~~--- 607 (1136)
-.|..+...|......++
T Consensus 702 e~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVL 781 (941)
T KOG0389|consen 702 EKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVL 781 (941)
T ss_pred HHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEE
Confidence 011222222211111111
Q ss_pred -----hhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CceE-EEeeccccccccCCCccEEEEcCCCCCHh
Q 001155 608 -----FFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD-EINI-ICATVAFGMGINKPDVRFVIHHSLPKSIE 680 (1136)
Q Consensus 608 -----~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~V-LVAT~alg~GIDlP~V~~VIh~d~P~Sie 680 (1136)
...++.+..++...++...-+.|...-.+|+.+++.|..+ .+.| |++|.+.|.|||+-..++||.||+..++-
T Consensus 782 iFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 782 IFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred EeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc
Confidence 1112333344445677777778999999999999999875 3444 88999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCcEEEEE
Q 001155 681 GYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 681 ~YiQriGRAGR~G~~g~~il~ 701 (1136)
+-.|.--||+|.|+.-.+.++
T Consensus 862 dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 862 DDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred ccchhHHHHHhhCCcceeEEE
Confidence 999999999999986554443
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.49 E-value=2e-12 Score=158.61 Aligned_cols=293 Identities=19% Similarity=0.149 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHHHC---CC----c---EEEEccCCChHHHHH--HhhhhhC---C-----CcEEEEccChhhHHHHHHH
Q 001155 393 SFRPNQREIINATMS---GH----D---VFVLMPTGGGKSLTY--QLPALIC---P-----GITLVISPLVSLIQDQIMH 452 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~---g~----d---vLV~APTGsGKTl~y--~LpaL~~---~-----g~~LVIsPtraL~~dqv~~ 452 (1136)
.++|+|++.+.-++. |. + +|+.-..|+|||+.. +|..+++ . .++|||+|. +|+..|..+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999988763 33 2 566668899999752 2333332 2 679999997 788999999
Q ss_pred HHHcC----CCeEEecCCCCH--HHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 453 LLQAN----IPATFLSGNMEW--TEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 453 L~~~g----I~v~~L~g~~~~--~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
|.+-. |....+.|.... -....++.. ....-...|++.+.|.+. +.+.. + ....++++|+||.|.+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~-~~~~~~~~vli~sye~~~--~~~~~-i----l~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFL-GYKQFTTPVLIISYETAS--DYCRK-I----LLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHh-hhhheeEEEEeccHHHHH--HHHHH-H----hcCCCCeEEECCCCCc
Confidence 98753 445555555442 222222211 111124567888888774 22222 1 2234899999999996
Q ss_pred cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc------cCCCCchh-----------
Q 001155 527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ------SFNRPNLW----------- 589 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~------s~~r~nl~----------- 589 (1136)
|..-..+........-.+.|+||+|+-.+...++...|++..|-++.. -+..+++.
T Consensus 389 -------kN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~ 461 (776)
T KOG0390|consen 389 -------KNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDR 461 (776)
T ss_pred -------cchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhh
Confidence 333333334444455567899999998887777777776554432211 00000000
Q ss_pred ----------------------------------------------hhHHHHHH----------------HHHh------
Q 001155 590 ----------------------------------------------MDCEKVAE----------------RLQV------ 601 (1136)
Q Consensus 590 ----------------------------------------------~~~e~lae----------------~L~~------ 601 (1136)
....++.+ .|..
T Consensus 462 ~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 462 EREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPS 541 (776)
T ss_pred hhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHH
Confidence 00000000 0100
Q ss_pred cccc-----------cch----------------------------------------------hhHHHHHHHHhhcCCe
Q 001155 602 GLSY-----------GHF----------------------------------------------FLLKEFYVVSLECGHK 624 (1136)
Q Consensus 602 ~l~~-----------~~~----------------------------------------------~~~~~~~~~l~~~g~~ 624 (1136)
++.+ ... ..++.+.....-.|+.
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred hhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 0000 000 0000011111234889
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCC--ceE-EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEE
Q 001155 625 AAFYHGSIDPAQRAFVQKQWSKDE--INI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 625 v~~~Hagm~~~dR~~i~~~F~~g~--i~V-LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~ 701 (1136)
+..+||.|+..+|..+.+.|.+-. ..| |.+|.|.|.||++-....||.||+.+++..-.|.++||-|+|++-.|++|
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999743 244 66788999999999999999999999999999999999999999988877
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=3.7e-12 Score=158.06 Aligned_cols=136 Identities=18% Similarity=0.095 Sum_probs=100.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.+.++.+.+.|. .+++.|.-.--.+..| -|+.|.||.|||+++.+|++. .+..+.||+|+--|+.+....+...
T Consensus 70 ~vrEa~~R~lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 70 VAREAGKRVMGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred HHHHHHHHHhCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 456677777784 3466666554444444 589999999999999999974 3778999999999999888777654
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh---hhhhhccceeeeecccccc
Q 001155 457 ----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES---LNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 457 ----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~---l~~~~~l~lVVIDEAH~ls 527 (1136)
|+.+.++++++...++...+ .++|+|+|..-+. .|.+...+.. -.....+.++||||+|.++
T Consensus 147 ~~~lGl~v~~i~~~~~~~err~~Y--------~~dI~YGT~~e~g-FDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 147 YEFLGLSVGIVTPFQPPEEKRAAY--------AADITYGTNNEFG-FDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred hcccCCEEEEECCCCCHHHHHHHh--------cCCEEEEcccccc-cchhhccceechhhhcccccceeEechhhhee
Confidence 99999999998877776654 5899999998862 2434333221 0112458999999999985
No 130
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.45 E-value=1.6e-12 Score=155.62 Aligned_cols=293 Identities=19% Similarity=0.168 Sum_probs=196.0
Q ss_pred CCCCHHHHHHHHHHHC----CCcEEEEccCCChHHH--HHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHc--CCC
Q 001155 392 HSFRPNQREIINATMS----GHDVFVLMPTGGGKSL--TYQLPALIC----PGITLVISPLVSLIQDQIMHLLQA--NIP 459 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~----g~dvLV~APTGsGKTl--~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~--gI~ 459 (1136)
..|.++|++.+..+++ +.-.|+--..|-|||. +..|.+|.. .+++|||+|. .||.||+.+|... .++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 4578999999998863 4568999999999996 344555554 3789999998 6888999999887 456
Q ss_pred eEEecCCCCHHH---------HHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccC
Q 001155 460 ATFLSGNMEWTE---------QQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530 (1136)
Q Consensus 460 v~~L~g~~~~~~---------~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wG 530 (1136)
+.++++..+... ....+.. .......|+++|.+.+. ..-..+ ......++|+||.|.|
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r--~~~~~~~ilitty~~~r---~~~d~l----~~~~W~y~ILDEGH~I---- 349 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIR--KVATDGGILITTYDGFR---IQGDDL----LGILWDYVILDEGHRI---- 349 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhhee--eecccCcEEEEehhhhc---ccCccc----ccccccEEEecCcccc----
Confidence 777777655211 1111111 11235679999999873 111111 1223689999999996
Q ss_pred CCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce------EEecccCCC----------Cchh-----
Q 001155 531 HDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNC------IIFRQSFNR----------PNLW----- 589 (1136)
Q Consensus 531 hdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~------~i~~~s~~r----------~nl~----- 589 (1136)
|..-.++...+..++.+..++||+|+-.+-...+...+.+..| .+|...|.. +++.
T Consensus 350 ---rNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ay 426 (923)
T KOG0387|consen 350 ---RNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAY 426 (923)
T ss_pred ---cCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHH
Confidence 4444556666777788889999999877766655544432211 111111111 1111
Q ss_pred --------------------------------------------------------------------------------
Q 001155 590 -------------------------------------------------------------------------------- 589 (1136)
Q Consensus 590 -------------------------------------------------------------------------------- 589 (1136)
T Consensus 427 kca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 427 KCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence
Q ss_pred -----------------------hhHHHHHHHHHhcccc--------cchhhHHHHHHHHh-hcCCeEEEEcCCCCHHHH
Q 001155 590 -----------------------MDCEKVAERLQVGLSY--------GHFFLLKEFYVVSL-ECGHKAAFYHGSIDPAQR 637 (1136)
Q Consensus 590 -----------------------~~~e~lae~L~~~l~~--------~~~~~~~~~~~~l~-~~g~~v~~~Hagm~~~dR 637 (1136)
-..+.++..|...... .....+..+...+. ..|+...-..|..+...|
T Consensus 507 dll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 507 DLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred ccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 0011112222111111 11112233333344 468999999999999999
Q ss_pred HHHHHHHhcCC-ceE-EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEE
Q 001155 638 AFVQKQWSKDE-INI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 638 ~~i~~~F~~g~-i~V-LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~ 701 (1136)
..+.+.|.+++ +.| |+.|.+.|-|+|+-..+-||.||+-|++..-.|..-||-|.|++-.+++|
T Consensus 587 ~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 587 QKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred hHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999999775 444 78999999999999999999999999999999999999999997776665
No 131
>PF00570 HRDC: HRDC domain Bloom syndrome. Werner syndrome.; InterPro: IPR002121 The HRDC (Helicase and RNase D C-terminal) domain has a putative role in nucleic acid binding. Mutations in the HRDC domain associated with the human BLM gene result in Bloom Syndrome (BS), an autosomal recessive disorder characterised by proportionate pre- and postnatal growth deficiency; sun-sensitive, telangiectatic, hypo- and hyperpigmented skin; predisposition to malignancy; and chromosomal instability [].; GO: 0003676 nucleic acid binding, 0005622 intracellular; PDB: 3SAG_B 3SAH_B 2CPR_A 3SAF_B 3CYM_A 1WUD_A 2HBK_A 2HBJ_A 2HBM_A 2HBL_A ....
Probab=99.45 E-value=1.1e-13 Score=122.44 Aligned_cols=67 Identities=43% Similarity=0.690 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETI 1019 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i 1019 (1136)
.++|++|..||.++|++ .++|||.||+|.+|.+||..+|.|.++|.+|+|+|+.++++||++||++|
T Consensus 2 ~~~~~~L~~~R~~~A~~--~~~~~~~Il~~~~L~~ia~~~P~s~~~L~~i~g~~~~~~~~~g~~il~~I 68 (68)
T PF00570_consen 2 LALLKALKEWREELARE--EDVPPYRILSDEALLEIAKRLPTSIEELLQIPGMGKRKVRKYGDEILEII 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHH--HTS-HHHHS-HHHHHHHHHH--SSHHHHHTSTTCGHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--cCcCcccccCHHHHHHHHHhCCCCHHHHHHccCCCHHHHHHHHHHHHhhC
Confidence 57999999999999999 78999999999999999999999999999999999999999999999987
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.44 E-value=1.2e-12 Score=158.63 Aligned_cols=289 Identities=17% Similarity=0.176 Sum_probs=167.0
Q ss_pred CCCCHHHHHHHHHHH----CCC-cEEEEccCCChHHHHHH--hhhhhC---CCcEEEEccChhhHHHHHHHHHHc---CC
Q 001155 392 HSFRPNQREIINATM----SGH-DVFVLMPTGGGKSLTYQ--LPALIC---PGITLVISPLVSLIQDQIMHLLQA---NI 458 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~-dvLV~APTGsGKTl~y~--LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~---gI 458 (1136)
..+|.+|..||..+. .|+ .+|++|.||+|||.+++ +-.|++ ..++|+++-+++|+.|-+..+..+ +-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 468999999998765 344 39999999999997653 333444 468999999999999988888776 22
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhh--hhccceeeeeccccccccCCCCccc
Q 001155 459 PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA--RELLARIVIDEAHCVSQWGHDFRPD 536 (1136)
Q Consensus 459 ~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~--~~~l~lVVIDEAH~ls~wGhdfR~~ 536 (1136)
.+..+.+... .+.++|.++|...+. ..+...-..... .+.+++|||||||+= .
T Consensus 244 ~~n~i~~~~~--------------~~s~~i~lsTyqt~~--~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---------i 298 (875)
T COG4096 244 KMNKIEDKKG--------------DTSSEIYLSTYQTMT--GRIEQKEDEYRRFGPGFFDLIVIDEAHRG---------I 298 (875)
T ss_pred ceeeeecccC--------------CcceeEEEeehHHHH--hhhhccccccccCCCCceeEEEechhhhh---------H
Confidence 3333332211 025789999999885 222221111111 234899999999972 2
Q ss_pred hhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHh-cCc------------------ceEEec-----ccCCCCch----
Q 001155 537 YQGLGILKQKFPNTPVLALTATATASVKEDVVQAL-GLV------------------NCIIFR-----QSFNRPNL---- 588 (1136)
Q Consensus 537 y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L-~l~------------------~~~i~~-----~s~~r~nl---- 588 (1136)
|..-..+...| +..+++||||+......+-..++ +.. ..+-+. .+....++
T Consensus 299 ~~~~~~I~dYF-dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~sere 377 (875)
T COG4096 299 YSEWSSILDYF-DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSERE 377 (875)
T ss_pred HhhhHHHHHHH-HHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhh
Confidence 33333344444 23455669998875544333333 111 000000 00001111
Q ss_pred ------------------------h-----hhHHHHHHHHHhc----------ccccchhhHHHHHHHHh----hc-CCe
Q 001155 589 ------------------------W-----MDCEKVAERLQVG----------LSYGHFFLLKEFYVVSL----EC-GHK 624 (1136)
Q Consensus 589 ------------------------~-----~~~e~lae~L~~~----------l~~~~~~~~~~~~~~l~----~~-g~~ 624 (1136)
. ..+..+.+.+... ++.....+.+.+...+. +. |--
T Consensus 378 k~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~ 457 (875)
T COG4096 378 KLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRY 457 (875)
T ss_pred hhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCce
Confidence 0 1122333333321 11111122222222221 11 222
Q ss_pred EEEEcCCCCHHHHHHHHHHHh-cCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCC-C------CCc
Q 001155 625 AAFYHGSIDPAQRAFVQKQWS-KDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD-G------QRS 696 (1136)
Q Consensus 625 v~~~Hagm~~~dR~~i~~~F~-~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~-G------~~g 696 (1136)
+..+.+.- ......|.+.+. +.--+|.|+.+++..|||+|.|..++.+-...|...|.||+||+-|. + +..
T Consensus 458 a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK 536 (875)
T COG4096 458 AMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDK 536 (875)
T ss_pred EEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccc
Confidence 33344432 334444444444 34567888889999999999999999999999999999999999993 1 234
Q ss_pred EEEEEeccccH
Q 001155 697 SCVLYYSYSDF 707 (1136)
Q Consensus 697 ~~il~~~~~D~ 707 (1136)
..+++++..+.
T Consensus 537 ~~F~ifDf~~~ 547 (875)
T COG4096 537 EFFTIFDFVDN 547 (875)
T ss_pred eeEEEEEhhhh
Confidence 55666665544
No 133
>COG4889 Predicted helicase [General function prediction only]
Probab=99.44 E-value=8e-13 Score=157.88 Aligned_cols=297 Identities=18% Similarity=0.244 Sum_probs=167.5
Q ss_pred CCCCCHHHHHHHHHHHCC----CcEEEEccCCChHHHHHHhhh-hhCCCcEEEEccChhhHHHHHHHHHHc---CCCeEE
Q 001155 391 NHSFRPNQREIINATMSG----HDVFVLMPTGGGKSLTYQLPA-LICPGITLVISPLVSLIQDQIMHLLQA---NIPATF 462 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g----~dvLV~APTGsGKTl~y~Lpa-L~~~g~~LVIsPtraL~~dqv~~L~~~---gI~v~~ 462 (1136)
-..|||+|++||+++++| ...=++|.+|+|||.+.+-.+ -+...++|+++|.++|+.|.++.|.+. .+.+..
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 367999999999999864 236677889999999876322 233588999999999999999999764 455555
Q ss_pred ecCCCCHH-----------------HHHHHHHHHhc--ccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 463 LSGNMEWT-----------------EQQEILRELNS--DYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 463 L~g~~~~~-----------------~~~~~l~~l~~--~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
++++.... ....++..+.. ...+.-|+++|...+. .+.. ........+++||.|||
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~---~i~e--AQe~G~~~fDliicDEA 313 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP---RIKE--AQEAGLDEFDLIICDEA 313 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH---HHHH--HHHcCCCCccEEEecch
Confidence 55543221 11112222111 1246779999999883 2211 12223456999999999
Q ss_pred cccccc--CCCCccchhhhhhhhccCCCCCEEEEeeccchhhHH---HHHH----HhcCcceEEecccCCCCchh-----
Q 001155 524 HCVSQW--GHDFRPDYQGLGILKQKFPNTPVLALTATATASVKE---DVVQ----ALGLVNCIIFRQSFNRPNLW----- 589 (1136)
Q Consensus 524 H~ls~w--GhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~---dI~~----~L~l~~~~i~~~s~~r~nl~----- 589 (1136)
|+--.- ..+-...|.++.. -+.....+.+-+|||+.-.... .... ...+.+..+|...|.|-+.-
T Consensus 314 HRTtGa~~a~dd~saFt~vHs-~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~r 392 (1518)
T COG4889 314 HRTTGATLAGDDKSAFTRVHS-DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVER 392 (1518)
T ss_pred hccccceecccCcccceeecC-cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHh
Confidence 986320 0111222221100 0111234567788886433211 0000 00111111121111111110
Q ss_pred -----------------------------------hhHHH---------------------------------HHHHHHh
Q 001155 590 -----------------------------------MDCEK---------------------------------VAERLQV 601 (1136)
Q Consensus 590 -----------------------------------~~~e~---------------------------------lae~L~~ 601 (1136)
..+.+ .+..++.
T Consensus 393 dlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~t 472 (1518)
T COG4889 393 DLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKT 472 (1518)
T ss_pred hhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHH
Confidence 00000 0000000
Q ss_pred cccc-cchhhHHHHHH-HHhh--cCC--eEEEEcCCCCHHHHHHHHH---HHhcCCceEEEeeccccccccCCCccEEEE
Q 001155 602 GLSY-GHFFLLKEFYV-VSLE--CGH--KAAFYHGSIDPAQRAFVQK---QWSKDEINIICATVAFGMGINKPDVRFVIH 672 (1136)
Q Consensus 602 ~l~~-~~~~~~~~~~~-~l~~--~g~--~v~~~Hagm~~~dR~~i~~---~F~~g~i~VLVAT~alg~GIDlP~V~~VIh 672 (1136)
.-.. ..+..+.+.|. .+.+ .++ .+-...|.|...+|...+. .|...+++||---..++.|||+|+++.||.
T Consensus 473 SK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF 552 (1518)
T COG4889 473 SKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF 552 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE
Confidence 0000 00001112222 1111 233 4445567899888854443 345678999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccCCCC
Q 001155 673 HSLPKSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 673 ~d~P~Sie~YiQriGRAGR~G 693 (1136)
++.-.|+.+.+|.+||..|-.
T Consensus 553 f~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 553 FDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred ecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999953
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=3.1e-11 Score=148.57 Aligned_cols=306 Identities=17% Similarity=0.175 Sum_probs=194.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHH---HHHHH
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQD---QIMHL 453 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~d---qv~~L 453 (1136)
.+.++.+..+|+ .+++.|.-.--.+..|+ |+.|.||-||||++.||+++. +..+-||...--|+.- ++..+
T Consensus 66 vvREA~~R~lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 66 VAREATKRVLGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred HHHHHHHHHhCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHH
Confidence 466777888887 35777777666666664 899999999999999999753 5567777777778653 33333
Q ss_pred H-HcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh---hhhhhccceeeeecccccc-c
Q 001155 454 L-QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES---LNARELLARIVIDEAHCVS-Q 528 (1136)
Q Consensus 454 ~-~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~---l~~~~~l~lVVIDEAH~ls-~ 528 (1136)
- .+|+.++++..+++..++...+ .++|+|+|...+. .|.+...+.. -.....+.+.||||+|.++ +
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~aY--------~~DItYgTn~E~g-FDYLRDnm~~~~~~~vqR~~~faIVDEVDSILID 213 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREAY--------ACDITYSVHSELG-FDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILID 213 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHhc--------cCCCeeecCcccc-hhhhhhcccccHHHhcCcccceeeeccchheeec
Confidence 3 3499999999888877766554 6899999998874 3555544321 1112447889999999875 0
Q ss_pred c--------C---------------------CCCc-------------------------cchh--------h-------
Q 001155 529 W--------G---------------------HDFR-------------------------PDYQ--------G------- 539 (1136)
Q Consensus 529 w--------G---------------------hdfR-------------------------~~y~--------~------- 539 (1136)
. | .+|. ..|. .
T Consensus 214 EArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A 293 (925)
T PRK12903 214 EAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRA 293 (925)
T ss_pred ccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHH
Confidence 0 0 0110 0000 0
Q ss_pred ------------------------------------------------------------hhhhhccCCCCCEEEEeecc
Q 001155 540 ------------------------------------------------------------LGILKQKFPNTPVLALTATA 559 (1136)
Q Consensus 540 ------------------------------------------------------------L~~l~~~~p~~~iv~LSAT~ 559 (1136)
...+.+.+ ..+.|||+|+
T Consensus 294 ~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y--~kLsGMTGTA 371 (925)
T PRK12903 294 HKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLF--KKLSGMTGTA 371 (925)
T ss_pred HHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc--chhhccCCCC
Confidence 00001111 1345677776
Q ss_pred chhhHHHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh--------cccccchhhHHHHHHHHh
Q 001155 560 TASVKEDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV--------GLSYGHFFLLKEFYVVSL 619 (1136)
Q Consensus 560 ~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~--------~l~~~~~~~~~~~~~~l~ 619 (1136)
.... ..+.+..++. ++.-+.++|... .....+.+.+.. ++....+.....+...+.
T Consensus 372 ~te~-~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~ 447 (925)
T PRK12903 372 KTEE-QEFIDIYNMR---VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLL 447 (925)
T ss_pred HHHH-HHHHHHhCCC---EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 5432 2333433333 333444555433 111222232222 222223334455666677
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcC-CceEEEeeccccccccCCCcc--------EEEEcCCCCCHhHHHHHhcccC
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKD-EINIICATVAFGMGINKPDVR--------FVIHHSLPKSIEGYHQECGRAG 690 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~VLVAT~alg~GIDlP~V~--------~VIh~d~P~Sie~YiQriGRAG 690 (1136)
..|+...++++.-...+-..|- ..| .-.|.|||+++|||.|+.--. +||....|.|..---|-.||||
T Consensus 448 ~~gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaG 524 (925)
T PRK12903 448 EANIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSG 524 (925)
T ss_pred HCCCCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccc
Confidence 7899888888875544433333 234 457999999999999986432 8999999999988889999999
Q ss_pred CCCCCcEEEEEecccc
Q 001155 691 RDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 691 R~G~~g~~il~~~~~D 706 (1136)
|.|.+|.+..|.+..|
T Consensus 525 RQGDpGss~f~lSLeD 540 (925)
T PRK12903 525 RQGDVGESRFFISLDD 540 (925)
T ss_pred cCCCCCcceEEEecch
Confidence 9999999999998776
No 135
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.42 E-value=4.2e-13 Score=139.34 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHC-------CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEe--
Q 001155 393 SFRPNQREIINATMS-------GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFL-- 463 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~-------g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L-- 463 (1136)
+||++|.+++..+.. .+++++.||||+|||.+++..+.....++||++|+++|+.|+...+...+-.....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999883 57899999999999999886555443499999999999999999996543221111
Q ss_pred -------------cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHH------HHhhhhhhccceeeeeccc
Q 001155 464 -------------SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQ------LESLNARELLARIVIDEAH 524 (1136)
Q Consensus 464 -------------~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~------l~~l~~~~~l~lVVIDEAH 524 (1136)
.......... . ......+++++|..+|......... ..........++||+||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKS-E-----SDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHH-H-----HCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred ccccccccccccccccccccccc-c-----cccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 0111111111 1 1124788999999999632111000 0011122357899999999
Q ss_pred cccccCCCCccchhhhhhhhccCCCCCEEEEeeccch
Q 001155 525 CVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATA 561 (1136)
Q Consensus 525 ~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~ 561 (1136)
++..- ..|..+.. ++...+++||||+.+
T Consensus 157 ~~~~~-----~~~~~i~~----~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 157 HYPSD-----SSYREIIE----FKAAFILGLTATPFR 184 (184)
T ss_dssp CTHHH-----HHHHHHHH----SSCCEEEEEESS-S-
T ss_pred hcCCH-----HHHHHHHc----CCCCeEEEEEeCccC
Confidence 97421 11333322 677889999999863
No 136
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.40 E-value=1.4e-12 Score=148.86 Aligned_cols=286 Identities=19% Similarity=0.237 Sum_probs=174.1
Q ss_pred CCCCHHHHHHHHHHHC-C--CcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc----CCCeEEec
Q 001155 392 HSFRPNQREIINATMS-G--HDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA----NIPATFLS 464 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~-g--~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~ 464 (1136)
..+||+|...+..++. | +..+|+.|+|+|||++-.-++.--...+||++..---+.||..++... .-.++.++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 5799999999999984 3 579999999999999977666666788999998766677777666554 33456666
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhch----HHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS----DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~----d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
++..... ..++.|+|+|..++... .--.+.+. .......+++|+||+|.+...- ||..+..+
T Consensus 381 sd~Ke~~-----------~~~~gvvvsTYsMva~t~kRS~eaek~m~-~l~~~EWGllllDEVHvvPA~M--FRRVlsiv 446 (776)
T KOG1123|consen 381 SDAKERF-----------PSGAGVVVTTYSMVAYTGKRSHEAEKIMD-FLRGREWGLLLLDEVHVVPAKM--FRRVLSIV 446 (776)
T ss_pred ccccccC-----------CCCCcEEEEeeehhhhcccccHHHHHHHH-HHhcCeeeeEEeehhccchHHH--HHHHHHHH
Confidence 6543111 14788999999998631 11111111 1222347999999999985432 44332222
Q ss_pred hhhhccCCCCCEEEEeeccchhhHH--HH----------HHHhcCcc--------e-EEec---ccC-------------
Q 001155 541 GILKQKFPNTPVLALTATATASVKE--DV----------VQALGLVN--------C-IIFR---QSF------------- 583 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~~--dI----------~~~L~l~~--------~-~i~~---~s~------------- 583 (1136)
...-.++||||+-..... |+ .+|+.+.. | .+.. ..|
T Consensus 447 -------~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 447 -------QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred -------HHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 123468999998765321 00 01111110 0 0000 000
Q ss_pred ----CCCchhhhHHHHHHHHHh----c-ccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CceEEE
Q 001155 584 ----NRPNLWMDCEKVAERLQV----G-LSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD-EINIIC 653 (1136)
Q Consensus 584 ----~r~nl~~~~e~lae~L~~----~-l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~VLV 653 (1136)
..|+-+..|+-+...-.. . ++..+++.+++ +..+.| --+++|..++.+|..|++.|..+ .++.|+
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~---YAikl~--KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKE---YAIKLG--KPFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHH---HHHHcC--CceEECCCchhHHHHHHHhcccCCccceEE
Confidence 011111223332222211 0 11111122222 222222 34568999999999999999964 788899
Q ss_pred eeccccccccCCCccEEEEcCCCC-CHhHHHHHhcccCCCCC---CcEEEEEec
Q 001155 654 ATVAFGMGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQ---RSSCVLYYS 703 (1136)
Q Consensus 654 AT~alg~GIDlP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~---~g~~il~~~ 703 (1136)
-..+....||+|...++|+..... |-..--||.||.-|+-+ .+.-..||+
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeee
Confidence 999999999999999999776654 66677899999888632 344444443
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-12 Score=156.00 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=70.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEc--------CCCCCH----------hHHHH
Q 001155 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHH--------SLPKSI----------EGYHQ 684 (1136)
Q Consensus 623 ~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~--------d~P~Si----------e~YiQ 684 (1136)
.-|..+++-|+.+++.+|++.--.|..-++|||++++..+.+|.|++||.. |--.++ .+--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 347788999999999999999999999999999999999999999999944 433333 34469
Q ss_pred HhcccCCCCCCcEEEEEecccc
Q 001155 685 ECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 685 riGRAGR~G~~g~~il~~~~~D 706 (1136)
|.|||||.| +|+|+-+|+..-
T Consensus 685 RAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 685 RAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred hccccCCCC-CCceeehhhhHH
Confidence 999999986 999999998643
No 138
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.40 E-value=2e-11 Score=155.31 Aligned_cols=77 Identities=26% Similarity=0.316 Sum_probs=58.7
Q ss_pred CCCCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhhhC--CCcEEEEccChhhHHHHHH----HHHH-cCC
Q 001155 390 GNHSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPALIC--PGITLVISPLVSLIQDQIM----HLLQ-ANI 458 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL~~--~g~~LVIsPtraL~~dqv~----~L~~-~gI 458 (1136)
|| .+|+.|.+....+. .++.+++.|+||+|||++|++|++.. +.++||.+||++|.+|.+. .|.+ .++
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~ 321 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVKAIQEVFHI 321 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence 55 47999999555543 47789999999999999999999875 5789999999999987742 2332 366
Q ss_pred CeEEecCCC
Q 001155 459 PATFLSGNM 467 (1136)
Q Consensus 459 ~v~~L~g~~ 467 (1136)
++..+.|+.
T Consensus 322 ~~~~~kg~~ 330 (820)
T PRK07246 322 DCHSLKGPQ 330 (820)
T ss_pred cEEEEECCc
Confidence 666655543
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=1.3e-12 Score=117.59 Aligned_cols=75 Identities=35% Similarity=0.521 Sum_probs=72.2
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCC
Q 001155 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 619 ~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G 693 (1136)
...++.+..+||+|+..+|..+++.|.++...|||+|.++++|+|+|+++.||.+++|++...|.|++||++|.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 8 KELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 366899999999999999999999999999999999999999999999999999999999999999999999976
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.32 E-value=4.5e-12 Score=124.40 Aligned_cols=82 Identities=38% Similarity=0.546 Sum_probs=78.0
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..+..+..+||+++..+|..+++.|.++...||++|.++++|+|+|.+++||+++.|++...|+|++||+||.|+.|.++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~ 129 (131)
T cd00079 50 KPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAI 129 (131)
T ss_pred hcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred EE
Q 001155 700 LY 701 (1136)
Q Consensus 700 l~ 701 (1136)
+|
T Consensus 130 ~~ 131 (131)
T cd00079 130 LL 131 (131)
T ss_pred eC
Confidence 64
No 141
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=6.8e-12 Score=122.72 Aligned_cols=136 Identities=31% Similarity=0.373 Sum_probs=93.4
Q ss_pred CcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHcC---CCeEEecCCCCHHHHHHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQAN---IPATFLSGNMEWTEQQEILRELN 480 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~g---I~v~~L~g~~~~~~~~~~l~~l~ 480 (1136)
+++++.+|||+|||.+++..+... .+++||++|+..|+.++...+.... +.+..+.+...........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLL---- 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHh----
Confidence 468999999999999887776543 4789999999999999888887764 7777777765544433111
Q ss_pred cccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeecc
Q 001155 481 SDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATA 559 (1136)
Q Consensus 481 ~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~ 559 (1136)
....+|+++|++.+.. .+.. .......+++|||||+|.+..-. +.... ........+..+++++|||+
T Consensus 77 --~~~~~i~i~t~~~~~~--~~~~---~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 --SGKTDIVVGTPGRLLD--ELER---LKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cCCCCEEEECcHHHHH--HHHc---CCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 1478999999998852 1111 11122348899999999985421 11110 11233445678899999996
No 142
>smart00341 HRDC Helicase and RNase D C-terminal. Hypothetical role in nucleic acid binding. Mutations in the HRDC domain cause human disease.
Probab=99.30 E-value=8.5e-12 Score=114.04 Aligned_cols=75 Identities=29% Similarity=0.515 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFY 1027 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~~ 1027 (1136)
..+|++|..||.++|++ .++|||.||+|.+|.+||..+|.|.++|..|+|+|..++++||..|+++|.++.....
T Consensus 5 ~~~~~~L~~wR~~~A~~--~~~~~~~I~~~~~L~~ia~~~P~~~~~L~~i~g~~~~~~~~~g~~~~~~i~~~~~~~~ 79 (81)
T smart00341 5 LRLLRRLRQWRDEIARR--EDVPPYFVLPDETLIKMAAALPTNVSELLAIDGVGEEKARRYGKDLLAVIQEASDSPS 79 (81)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCCeEEECHHHHHHHHHHCCCCHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 67999999999999999 8999999999999999999999999999999999999999999999999999987654
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.30 E-value=4.9e-10 Score=138.95 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=100.4
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH-
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ- 455 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~- 455 (1136)
-+.++.+..+|+. +++.|.-..-.+ .+.-|+.|.||-|||+++.+|++. .+..+.||++...|+..-...+..
T Consensus 64 vvrEa~~R~lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 64 LTREASFRTLGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred HHHHHHHHHhCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHH
Confidence 4567777788875 567776654444 445799999999999999999964 367789999999998865555433
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh-h--hhhhccceeeeecccccc
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES-L--NARELLARIVIDEAHCVS 527 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~-l--~~~~~l~lVVIDEAH~ls 527 (1136)
+|+.++++.++++..++...+ .++|+|+|...+. .|.+...+.. . .....+.+.||||||.++
T Consensus 141 y~~LGLsvg~i~~~~~~~err~aY--------~~DItYgTn~e~g-FDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEERKKNY--------LKDITYVTNSELG-FDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHcCCceeeeCCCCChHHHHHhc--------CCCCEecCCcccc-ccchhhccCcChHHhhccccceeeeecchhhe
Confidence 499999999988887766654 6799999998774 3555554421 1 112448899999999875
No 144
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.30 E-value=2.8e-11 Score=147.98 Aligned_cols=298 Identities=18% Similarity=0.172 Sum_probs=198.4
Q ss_pred CCCCHHHHHHHHHHHC----CCcEEEEccCCChHHHH------HHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeE
Q 001155 392 HSFRPNQREIINATMS----GHDVFVLMPTGGGKSLT------YQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAT 461 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~----g~dvLV~APTGsGKTl~------y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~ 461 (1136)
..++++|...+..+.+ +-|.|+.-.+|-|||+. |++-.....|.-|||+|+-.|.+ |..++..-.-.+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccccee
Confidence 4799999999988652 34689999999999974 33333344788999999999986 7777766655566
Q ss_pred EecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhh
Q 001155 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541 (1136)
Q Consensus 462 ~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~ 541 (1136)
.+....+...+......+.. +.++||++|.|.+.+...++.++. ..++||||.|+|..- ..+|.
T Consensus 472 ~i~YkGtp~~R~~l~~qir~--gKFnVLlTtyEyiikdk~lLsKI~-------W~yMIIDEGHRmKNa-------~~KLt 535 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRH--GKFNVLLTTYEYIIKDKALLSKIS-------WKYMIIDEGHRMKNA-------ICKLT 535 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhc--ccceeeeeeHHHhcCCHHHHhccC-------Ccceeecccccccch-------hhHHH
Confidence 66666666666666666655 899999999999976554444333 578999999998541 12333
Q ss_pred hhhc-cCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc------CCCC----------------------------
Q 001155 542 ILKQ-KFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS------FNRP---------------------------- 586 (1136)
Q Consensus 542 ~l~~-~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s------~~r~---------------------------- 586 (1136)
.... .+.....++||+|+-.+....+...|++.-+.+|.+. |+.|
T Consensus 536 ~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRP 615 (1157)
T KOG0386|consen 536 DTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRP 615 (1157)
T ss_pred HHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhH
Confidence 2222 4445567888999877766666666655444443321 1111
Q ss_pred chh------------------hhHH-------------------------------------------------------
Q 001155 587 NLW------------------MDCE------------------------------------------------------- 593 (1136)
Q Consensus 587 nl~------------------~~~e------------------------------------------------------- 593 (1136)
.+. ..|.
T Consensus 616 FlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~ 695 (1157)
T KOG0386|consen 616 FLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS 695 (1157)
T ss_pred HHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccc
Confidence 000 0000
Q ss_pred ---------------------HHHHHHHh-----cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 001155 594 ---------------------KVAERLQV-----GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD 647 (1136)
Q Consensus 594 ---------------------~lae~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g 647 (1136)
.+..+|+. ++++........+..++.-.++...-+.|....++|-..++.|..-
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 00000000 0000000011112222333455566678999999999999999864
Q ss_pred C---ceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 648 E---INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 648 ~---i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
. ..+|.+|.+.|.|+|+...+.||.||..+++-...|+.-||.|.|+...+-++....-
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 3 4468899999999999999999999999999999999999999999887777765443
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=1.1e-09 Score=135.48 Aligned_cols=136 Identities=19% Similarity=0.197 Sum_probs=100.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH-
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ- 455 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~- 455 (1136)
.+.++.+..+|+. +++.|.-.--++..| -|+.|.||-|||+++.||++.. +..+-||.+.--|+..-.+.+..
T Consensus 73 ~vREa~~R~lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 73 VVREASKRVLGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred HHHHHHHHHhCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 4566777777864 466666555455444 5999999999999999999864 67789999999998754443332
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh-h--hhhhccceeeeecccccc
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES-L--NARELLARIVIDEAHCVS 527 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~-l--~~~~~l~lVVIDEAH~ls 527 (1136)
+|+.++++.++++..++...+ .++|+|+|+..+. .|.+...+.. . .....+.+.||||||.|+
T Consensus 150 y~~LGLtvg~i~~~~~~~err~aY--------~~DItYgTn~e~g-FDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRFLGLSVGLIQQDMSPEERKKNY--------ACDITYATNSELG-FDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHhCCeEEEECCCCChHHHHHhc--------CCCeEEecCCccc-ccchhhhhcccccccccCccceEEEeccccee
Confidence 499999999988877766543 7899999999884 3666555442 1 112458899999999885
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=5.9e-10 Score=144.23 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHH----HHHc---
Q 001155 392 HSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMH----LLQA--- 456 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~----L~~~--- 456 (1136)
-.+|+-|.+.+..+. .++.++|.||||+|||++|++|++.. +.++||-++|+.|.+|.+.. +.+.
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~ 335 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKIFPF 335 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcCC
Confidence 368999999666554 57789999999999999999999853 56788888999998776542 3332
Q ss_pred CCCeEEecCCC
Q 001155 457 NIPATFLSGNM 467 (1136)
Q Consensus 457 gI~v~~L~g~~ 467 (1136)
.++++.+.|..
T Consensus 336 ~~~~~~lKGr~ 346 (928)
T PRK08074 336 PVEAALLKGRS 346 (928)
T ss_pred CceEEEEEccc
Confidence 45566555543
No 147
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.21 E-value=2.3e-10 Score=131.15 Aligned_cols=288 Identities=18% Similarity=0.182 Sum_probs=172.0
Q ss_pred CCCCHHHHHHHHHHH-CCCcEEEEccCCChHHHHHHhhhh--hCCCcEEEEccChhhHHHHHHHHHHc---CCCeEEecC
Q 001155 392 HSFRPNQREIINATM-SGHDVFVLMPTGGGKSLTYQLPAL--ICPGITLVISPLVSLIQDQIMHLLQA---NIPATFLSG 465 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~y~LpaL--~~~g~~LVIsPtraL~~dqv~~L~~~---gI~v~~L~g 465 (1136)
..|-|+|++.+..++ .|..+|+.-..|-|||+.++.-+. ......|||+|- +|-..|.+.|... -.++.++.+
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 457899999998877 477899999999999998765443 336788999997 4555577777665 233444444
Q ss_pred CCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhc
Q 001155 466 NMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQ 545 (1136)
Q Consensus 466 ~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~ 545 (1136)
..+.-. .+. ....|.|++.|++. .+...+. ....++||+||.|.|-.--. .+......
T Consensus 276 ~~D~~~------~~~---t~~~v~ivSye~ls---~l~~~l~----~~~~~vvI~DEsH~Lk~skt------kr~Ka~~d 333 (689)
T KOG1000|consen 276 SSDPLP------DVC---TSNTVAIVSYEQLS---LLHDILK----KEKYRVVIFDESHMLKDSKT------KRTKAATD 333 (689)
T ss_pred ccCCcc------ccc---cCCeEEEEEHHHHH---HHHHHHh----cccceEEEEechhhhhccch------hhhhhhhh
Confidence 332110 000 13568999999884 2222222 23378999999999843110 11111111
Q ss_pred cCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEe-------------------cccCCCCchh----------------
Q 001155 546 KFP-NTPVLALTATATASVKEDVVQALGLVNCIIF-------------------RQSFNRPNLW---------------- 589 (1136)
Q Consensus 546 ~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~-------------------~~s~~r~nl~---------------- 589 (1136)
... ..++++||+|+.-.--..+...+...+..+| ..-..-.|+.
T Consensus 334 llk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK 413 (689)
T KOG1000|consen 334 LLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLK 413 (689)
T ss_pred HHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111 3468899999643221111111111111000 0000001111
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHh----------
Q 001155 590 ----------------------------------------------------------MDCEKVAERLQV---------- 601 (1136)
Q Consensus 590 ----------------------------------------------------------~~~e~lae~L~~---------- 601 (1136)
..+..+.+.|..
T Consensus 414 ~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~ 493 (689)
T KOG1000|consen 414 ADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPR 493 (689)
T ss_pred HHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCc
Confidence 000000111111
Q ss_pred --cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CceE-EEeeccccccccCCCccEEEEcCCCC
Q 001155 602 --GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD-EINI-ICATVAFGMGINKPDVRFVIHHSLPK 677 (1136)
Q Consensus 602 --~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~V-LVAT~alg~GIDlP~V~~VIh~d~P~ 677 (1136)
+++.-|...++.+...+.+.+++..-+.|..+..+|....+.|... +++| +++-.++++|+++.+.++|+...+++
T Consensus 494 KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 494 KFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred eEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 0000111122334444556677777888999999999999999864 5665 45566789999999999999999999
Q ss_pred CHhHHHHHhcccCCCCCCcEEEEEe
Q 001155 678 SIEGYHQECGRAGRDGQRSSCVLYY 702 (1136)
Q Consensus 678 Sie~YiQriGRAGR~G~~g~~il~~ 702 (1136)
++--.+|.--||.|.|+.+.+.++|
T Consensus 574 nPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 574 NPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred CCceEEechhhhhhccccceeeEEE
Confidence 9999999999999999976554444
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.18 E-value=7.2e-10 Score=126.77 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=76.2
Q ss_pred HhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CceE-EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCC-
Q 001155 618 SLECGHKAAFYHGSIDPAQRAFVQKQWSKD-EINI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ- 694 (1136)
Q Consensus 618 l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~V-LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~- 694 (1136)
+.+.|+.++-+-|+|++..|...++.|.++ +++| ||+-.+.|..+|+-....|+..|+.+++..-.|..-|..|.|+
T Consensus 658 L~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 658 LGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred hhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 446799999999999999999999999986 6666 6788899999999999999999999999999999999999987
Q ss_pred -CcEEEEEecc
Q 001155 695 -RSSCVLYYSY 704 (1136)
Q Consensus 695 -~g~~il~~~~ 704 (1136)
+-..+-|+-.
T Consensus 738 rPvkvvrf~iE 748 (791)
T KOG1002|consen 738 RPVKVVRFCIE 748 (791)
T ss_pred cceeEEEeehh
Confidence 5666666643
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.12 E-value=4.2e-09 Score=130.76 Aligned_cols=135 Identities=14% Similarity=0.016 Sum_probs=105.4
Q ss_pred CCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHc-C-CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEe
Q 001155 417 TGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQA-N-IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYV 491 (1136)
Q Consensus 417 TGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~-g-I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~ 491 (1136)
+|+|||.+|+-.+ +..++.+||++|.++|..|.+..|... | ..+..+++..+..++...+..+.. |..+|+|+
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IViG 246 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARVVVG 246 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcEEEE
Confidence 5999999997544 455778999999999999999999876 5 679999999999998888877765 78999999
Q ss_pred ChhhhhchHHHHHHHHhhhhhhccceeeeecccccccc-CCCCccchhhhhhhhccCCCCCEEEEeeccchhhHH
Q 001155 492 TPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQW-GHDFRPDYQGLGILKQKFPNTPVLALTATATASVKE 565 (1136)
Q Consensus 492 TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~w-GhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~ 565 (1136)
|-.-+. ..+.++++|||||=|--+=- ....+..-+.+..++....+.++|+-|||++-....
T Consensus 247 tRSAvF------------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 247 TRSAVF------------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred cceeEE------------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 988763 23455899999999964311 001222336677788888899999999998876543
No 150
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.10 E-value=1.4e-11 Score=151.05 Aligned_cols=167 Identities=19% Similarity=0.277 Sum_probs=128.7
Q ss_pred CCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc----CCCeE
Q 001155 392 HSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA----NIPAT 461 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~----gI~v~ 461 (1136)
..|+|+|.+++...+. ..+.++.+|||+|||++|.+.+... ..+++||+|.++|+.+-+..|..+ |+++.
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 4688999999988775 6789999999999999999888743 678999999999999888888765 88899
Q ss_pred EecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhh
Q 001155 462 FLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLG 541 (1136)
Q Consensus 462 ~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~ 541 (1136)
.++|+...+.... ...+++|+|||+| +-+.|.|.....++.+.++|+||.||+.+ -|..+..+.
T Consensus 1006 e~tgd~~pd~~~v---------~~~~~~ittpek~---dgi~Rsw~~r~~v~~v~~iv~de~hllg~----~rgPVle~i 1069 (1230)
T KOG0952|consen 1006 ELTGDVTPDVKAV---------READIVITTPEKW---DGISRSWQTRKYVQSVSLIVLDEIHLLGE----DRGPVLEVI 1069 (1230)
T ss_pred eccCccCCChhhe---------ecCceEEcccccc---cCccccccchhhhccccceeecccccccC----CCcceEEEE
Confidence 9999987763221 3788999999999 67888899999999999999999999854 233333322
Q ss_pred hhhccC------CCCCEEEEeeccchhhHHHHHHHhcCcce
Q 001155 542 ILKQKF------PNTPVLALTATATASVKEDVVQALGLVNC 576 (1136)
Q Consensus 542 ~l~~~~------p~~~iv~LSAT~~~~v~~dI~~~L~l~~~ 576 (1136)
..+..+ +.++.++||--+.+. .|+.++|+..+.
T Consensus 1070 vsr~n~~s~~t~~~vr~~glsta~~na--~dla~wl~~~~~ 1108 (1230)
T KOG0952|consen 1070 VSRMNYISSQTEEPVRYLGLSTALANA--NDLADWLNIKDM 1108 (1230)
T ss_pred eeccccCccccCcchhhhhHhhhhhcc--HHHHHHhCCCCc
Confidence 222222 245566665555444 689999988766
No 151
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.08 E-value=2e-09 Score=127.14 Aligned_cols=81 Identities=26% Similarity=0.268 Sum_probs=70.6
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceE-EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 698 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~V-LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~ 698 (1136)
..|+.-.-+.|.....+|..+.+.|...++-| |++|.+.|.|||+.+.+.||.||..+++..-.|.+.||.|-|+.-.+
T Consensus 1066 yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1066 YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 44555556689999999999999999877765 78999999999999999999999999999999999999999986554
Q ss_pred EE
Q 001155 699 VL 700 (1136)
Q Consensus 699 il 700 (1136)
.+
T Consensus 1146 tv 1147 (1185)
T KOG0388|consen 1146 TV 1147 (1185)
T ss_pred ee
Confidence 33
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.07 E-value=2.7e-09 Score=132.64 Aligned_cols=287 Identities=20% Similarity=0.219 Sum_probs=181.3
Q ss_pred CCCHHHHHHHHHHH--C--CCcEEEEccCCChHHHHHHhhhh----hC--------CCcEEEEccChhhHHHHHHHHHHc
Q 001155 393 SFRPNQREIINATM--S--GHDVFVLMPTGGGKSLTYQLPAL----IC--------PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il--~--g~dvLV~APTGsGKTl~y~LpaL----~~--------~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.+|.+|.+.++++. + +-+.|+|--.|-|||+..+.-+. .+ .-..|||+|. +|.-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 47889999999863 2 55799999999999986542222 11 2248999998 7888899999887
Q ss_pred --CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCc
Q 001155 457 --NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFR 534 (1136)
Q Consensus 457 --gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR 534 (1136)
-+++....|.-. .+...... ....+|+|++.+.+-+ |. ..+... ...++|+||-|-| |
T Consensus 1054 ~pfL~v~~yvg~p~--~r~~lR~q----~~~~~iiVtSYDv~Rn-D~--d~l~~~----~wNYcVLDEGHVi-------k 1113 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPA--ERRELRDQ----YKNANIIVTSYDVVRN-DV--DYLIKI----DWNYCVLDEGHVI-------K 1113 (1549)
T ss_pred cchhhhhhhcCChH--HHHHHHhh----ccccceEEeeHHHHHH-HH--HHHHhc----ccceEEecCccee-------c
Confidence 355555555432 22222111 2357999999988742 21 112222 2578999999986 3
Q ss_pred cchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce------EEecccCCCCchh-------------------
Q 001155 535 PDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNC------IIFRQSFNRPNLW------------------- 589 (1136)
Q Consensus 535 ~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~------~i~~~s~~r~nl~------------------- 589 (1136)
+.-.+|......+.....+.||+|+-.+...++...+.+--| ..|...|.+|-..
T Consensus 1114 N~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAle 1193 (1549)
T KOG0392|consen 1114 NSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALE 1193 (1549)
T ss_pred chHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHH
Confidence 334455555555566678899999887766666665433222 1233333333221
Q ss_pred -----------------------------hhH------HHH----HHH--------------------------H---Hh
Q 001155 590 -----------------------------MDC------EKV----AER--------------------------L---QV 601 (1136)
Q Consensus 590 -----------------------------~~~------e~l----ae~--------------------------L---~~ 601 (1136)
+.| +++ .+. | +.
T Consensus 1194 aLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrK 1273 (1549)
T KOG0392|consen 1194 ALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRK 1273 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHH
Confidence 000 000 000 0 00
Q ss_pred c-----ccccc----hh--------------------hHHHHHHHHhhcCC-----------------eEE---------
Q 001155 602 G-----LSYGH----FF--------------------LLKEFYVVSLECGH-----------------KAA--------- 626 (1136)
Q Consensus 602 ~-----l~~~~----~~--------------------~~~~~~~~l~~~g~-----------------~v~--------- 626 (1136)
+ +.... .. .+..+...+.++|+ ++.
T Consensus 1274 LcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~ml 1353 (1549)
T KOG0392|consen 1274 LCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSML 1353 (1549)
T ss_pred hcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHH
Confidence 0 00000 00 00111122223322 122
Q ss_pred ------------------EEcCCCCHHHHHHHHHHHhcC-CceEEE-eeccccccccCCCccEEEEcCCCCCHhHHHHHh
Q 001155 627 ------------------FYHGSIDPAQRAFVQKQWSKD-EINIIC-ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQEC 686 (1136)
Q Consensus 627 ------------------~~Hagm~~~dR~~i~~~F~~g-~i~VLV-AT~alg~GIDlP~V~~VIh~d~P~Sie~YiQri 686 (1136)
-+.|..++.+|.++.++|.++ .|+||+ .|-+.|-|+|+-..+.||.+.-.|++-.-+|.+
T Consensus 1354 DlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAM 1433 (1549)
T KOG0392|consen 1354 DLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAM 1433 (1549)
T ss_pred HHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHH
Confidence 247889999999999999998 899865 778999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEE
Q 001155 687 GRAGRDGQRSSCVL 700 (1136)
Q Consensus 687 GRAGR~G~~g~~il 700 (1136)
-||+|-|++-.+-+
T Consensus 1434 DRAHRIGQKrvVNV 1447 (1549)
T KOG0392|consen 1434 DRAHRIGQKRVVNV 1447 (1549)
T ss_pred HHHHhhcCceeeee
Confidence 99999998765433
No 153
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.06 E-value=4.3e-09 Score=120.70 Aligned_cols=303 Identities=17% Similarity=0.162 Sum_probs=155.1
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh-----hC-CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL-----IC-PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL-----~~-~g~~LVIsPtraL~~ 447 (1136)
..|++..-.+.+++.-.. ..+..+.+.+..+.+++-+++++.||+|||.. +|-. .. .+.+..--|.+--+-
T Consensus 29 ~~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~~~~v~CTQprrvaam 105 (699)
T KOG0925|consen 29 GKPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSHLTGVACTQPRRVAAM 105 (699)
T ss_pred CCcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhhccceeecCchHHHHH
Confidence 445556666667665322 12333444455556788899999999999962 3321 11 233333345554333
Q ss_pred HHHHHHHH-cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 448 DQIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 448 dqv~~L~~-~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
+...+... ..+..+.-.|-.- +.+ +-. ..++-+-|||-++|. +..-.-...+..++||+||||.=
T Consensus 106 sva~RVadEMDv~lG~EVGysI---rfE---dC~--~~~T~Lky~tDgmLl------rEams~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 106 SVAQRVADEMDVTLGEEVGYSI---RFE---DCT--SPNTLLKYCTDGMLL------REAMSDPLLGRYGVIILDEAHER 171 (699)
T ss_pred HHHHHHHHHhccccchhccccc---ccc---ccC--ChhHHHHHhcchHHH------HHHhhCcccccccEEEechhhhh
Confidence 33333322 2222221111100 000 000 011223356666654 22222333455789999999973
Q ss_pred cccCCCCccch--hhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcc---------eEEec-ccCCCCchhhhHHH
Q 001155 527 SQWGHDFRPDY--QGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVN---------CIIFR-QSFNRPNLWMDCEK 594 (1136)
Q Consensus 527 s~wGhdfR~~y--~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~---------~~i~~-~s~~r~nl~~~~e~ 594 (1136)
. ...+. -.|..+...-|+.++|.+|||+...-. ..+++-.+ ..+|. ....|..+...+..
T Consensus 172 t-----lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kf---q~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 172 T-----LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKF---QRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRT 243 (699)
T ss_pred h-----HHHHHHHHHHHHHHhhCCCceEEEeecccchHHH---HHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHH
Confidence 1 22222 124455555689999999999887633 33332211 11222 22222222122222
Q ss_pred HHHHHHhcccccch-------hhH----HHHHHHH----hhc-CCeEEEEcCCCCHHHHHHHHHHHhc---C--CceEEE
Q 001155 595 VAERLQVGLSYGHF-------FLL----KEFYVVS----LEC-GHKAAFYHGSIDPAQRAFVQKQWSK---D--EINIIC 653 (1136)
Q Consensus 595 lae~L~~~l~~~~~-------~~~----~~~~~~l----~~~-g~~v~~~Hagm~~~dR~~i~~~F~~---g--~i~VLV 653 (1136)
+.+.-.... -|.+ ..+ +.+.... ... ..++..+| +.++..+++-... | ..+|+|
T Consensus 244 V~qih~~ee-~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 244 VLQIHMCEE-PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHhccC-CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 222111100 0000 001 1111111 112 24677777 3344444443322 2 358999
Q ss_pred eeccccccccCCCccEEEEcCCC------------------CCHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 654 ATVAFGMGINKPDVRFVIHHSLP------------------KSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 654 AT~alg~GIDlP~V~~VIh~d~P------------------~Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
+|+.++..+-++.|.+||.-++- -|-.+-.||.|||||. .+|.|+-+|+..-+
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh
Confidence 99999999999999999955543 2666788999999997 79999999987543
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.05 E-value=3.1e-09 Score=133.47 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=55.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHHH---h-----------------------cCCceEEEeeccccccccCCCccEEEEcCCC
Q 001155 623 HKAAFYHGSIDPAQRAFVQKQW---S-----------------------KDEINIICATVAFGMGINKPDVRFVIHHSLP 676 (1136)
Q Consensus 623 ~~v~~~Hagm~~~dR~~i~~~F---~-----------------------~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P 676 (1136)
+.+.+||+..+..+|..+++.. . .+...|+|||.+.+.|+|+ |.+++| .-|
T Consensus 787 i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~ 863 (1110)
T TIGR02562 787 IHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADP 863 (1110)
T ss_pred eeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--ecc
Confidence 4578899999888888877553 1 1467899999999999996 455544 446
Q ss_pred CCHhHHHHHhcccCCCCC
Q 001155 677 KSIEGYHQECGRAGRDGQ 694 (1136)
Q Consensus 677 ~Sie~YiQriGRAGR~G~ 694 (1136)
.++...+|++||..|.|.
T Consensus 864 ~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 864 SSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CcHHHHHHHhhccccccc
Confidence 789999999999999876
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=2.6e-08 Score=124.79 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHH---HHHHHHHH-cCCCeEEecC-
Q 001155 394 FRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQ---DQIMHLLQ-ANIPATFLSG- 465 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~---dqv~~L~~-~gI~v~~L~g- 465 (1136)
++|+=.+.+-.+.-.+--|+-|.||-||||++.||+.+. +.-+-||...--|+. +|+..+.. +|+.++++..
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCC
Confidence 455555555555444445999999999999999999865 555666677767755 34444433 4999998876
Q ss_pred CCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhh---hhhhccceeeeecccccc
Q 001155 466 NMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL---NARELLARIVIDEAHCVS 527 (1136)
Q Consensus 466 ~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l---~~~~~l~lVVIDEAH~ls 527 (1136)
.++..++...+ .++|.|+|...+. .|.+...+... .....+.+.||||+|-++
T Consensus 248 ~~~~~~rr~aY--------~~DItYgTn~EfG-FDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 248 QPNSEARRKAY--------NADITYGTNNEFG-FDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCCHHHHHHhC--------CCcceecCCCccc-cccchhccccchHhhhCcCCceeEeechhhhh
Confidence 55666655543 7899999998874 35555443321 112347899999999874
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.00 E-value=3.9e-09 Score=125.49 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=73.2
Q ss_pred HhhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCceE-EEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCC
Q 001155 618 SLECGHKAAFYHGSIDPAQRAFVQKQWSK--DEINI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 694 (1136)
Q Consensus 618 l~~~g~~v~~~Hagm~~~dR~~i~~~F~~--g~i~V-LVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~ 694 (1136)
+...|+....+||.....+|..+.+.|.. |..+| |++-.+.|.|+|+-...++|..|+.|++.-=-|..-|.-|.|+
T Consensus 766 i~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQ 845 (901)
T KOG4439|consen 766 IQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQ 845 (901)
T ss_pred HhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcc
Confidence 34567888899999999999999999974 55677 4566788999999999999999999999999999999999999
Q ss_pred CcEEEEE
Q 001155 695 RSSCVLY 701 (1136)
Q Consensus 695 ~g~~il~ 701 (1136)
+..++++
T Consensus 846 kK~V~Ih 852 (901)
T KOG4439|consen 846 KKDVFIH 852 (901)
T ss_pred cCceEEE
Confidence 8876665
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.91 E-value=1e-07 Score=119.98 Aligned_cols=70 Identities=30% Similarity=0.458 Sum_probs=56.9
Q ss_pred HHhhCCCCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHH
Q 001155 386 KKVFGNHSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 386 k~~fG~~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
...|....+|+.|.+.+..+. .++.+++.||||+|||++|++|++.. +.+++|.++|+.|..|.+++...
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 344566789999999987654 35559999999999999999999965 37899999999998877766543
No 158
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.83 E-value=1.8e-07 Score=115.72 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHH----CCCcEEEEccCCChHHHH--HHhhhhhC----CCcEEEEccChhhHHHHHHHHHHc--CCCe
Q 001155 393 SFRPNQREIINATM----SGHDVFVLMPTGGGKSLT--YQLPALIC----PGITLVISPLVSLIQDQIMHLLQA--NIPA 460 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~--y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~--gI~v 460 (1136)
.||.+|...++++. ++-|.|+.-..|-|||+. .+|+-|.+ -|.-|||+||--+++ |-.+|++. |+++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 57888999988764 356799999999999974 34444433 477899999966664 88888887 8888
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
..++|... ++......+. ....+||.|++.-.+.+ .+..+. ..+..++||||||.|-.|-. ++.
T Consensus 694 LTYyGs~k--ErkeKRqgW~-kPnaFHVCItSYklv~q------d~~AFk-rkrWqyLvLDEaqnIKnfks------qrW 757 (1958)
T KOG0391|consen 694 LTYYGSHK--ERKEKRQGWA-KPNAFHVCITSYKLVFQ------DLTAFK-RKRWQYLVLDEAQNIKNFKS------QRW 757 (1958)
T ss_pred eeecCCHH--HHHHHhhccc-CCCeeEEeehhhHHHHh------HHHHHH-hhccceeehhhhhhhcchhH------HHH
Confidence 88888643 2222222222 12468899998876643 122221 13478999999999976541 111
Q ss_pred hhhhccCCCCCEEEEeeccchhhHHHHHHHh
Q 001155 541 GILKQKFPNTPVLALTATATASVKEDVVQAL 571 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L 571 (1136)
..+ -.|...+.++||.|+-.+....+...+
T Consensus 758 QAl-lnfnsqrRLLLtgTPLqNslmELWSLm 787 (1958)
T KOG0391|consen 758 QAL-LNFNSQRRLLLTGTPLQNSLMELWSLM 787 (1958)
T ss_pred HHH-hccchhheeeecCCchhhHHHHHHHHH
Confidence 111 223456688899997665544444443
No 159
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.72 E-value=4.4e-08 Score=110.17 Aligned_cols=160 Identities=19% Similarity=0.159 Sum_probs=95.4
Q ss_pred HHHHHHHHHHC-------------CCcEEEEccCCChHHHHHHhhhhh---CC-----CcEEEEccChhhHHHHHHHHHH
Q 001155 397 NQREIINATMS-------------GHDVFVLMPTGGGKSLTYQLPALI---CP-----GITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 397 iQ~eaI~~il~-------------g~dvLV~APTGsGKTl~y~LpaL~---~~-----g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
+|.+++..++. .+.+|++-.+|.|||+..+..+.. .. ..+|||+|. +++.+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 57777776532 346899999999999887655541 11 249999999 888899999988
Q ss_pred cC----CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhh--chHHHHHHHHhhhhhhccceeeeecccccccc
Q 001155 456 AN----IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVA--KSDVLLRQLESLNARELLARIVIDEAHCVSQW 529 (1136)
Q Consensus 456 ~g----I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~--~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~w 529 (1136)
.. +++..+.|..... ..........+++++|.+.+. ........+.. ..+++|||||+|.+...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERR------RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSCHHH------HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred ccccccccccccccccccc------cccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 73 4666666654111 111112357899999999885 00011112222 23899999999998432
Q ss_pred CCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCc
Q 001155 530 GHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLV 574 (1136)
Q Consensus 530 GhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~ 574 (1136)
. ..+......+....+++||||+...-..++...+.+-
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L 187 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFL 187 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHH
T ss_pred c-------ccccccccccccceEEeeccccccccccccccchhee
Confidence 2 1222222224466789999999888777777766543
No 160
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.63 E-value=1.5e-07 Score=115.86 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHCCCcEEEEccCCChHHHHHHhhhhh-----CCCcEEEEccChhhHHHHHHHHHH
Q 001155 403 NATMSGHDVFVLMPTGGGKSLTYQLPALI-----CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 403 ~~il~g~dvLV~APTGsGKTl~y~LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.++..++.+++.||||+|||++|++|++. .+.++||++||++|+.|.+..+..
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHH
Confidence 33446788999999999999999999975 367899999999999998876643
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.58 E-value=1.1e-06 Score=113.38 Aligned_cols=80 Identities=25% Similarity=0.219 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcC--CceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 622 GHKAAFYHGSIDPAQRAFVQKQWSKD--EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 622 g~~v~~~Hagm~~~dR~~i~~~F~~g--~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
++....++|.++..+|..+++.|.++ ..-++++|.+.|.|+|+-..++||+||..+++....|.+.||.|.|+...+.
T Consensus 735 ~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~ 814 (866)
T COG0553 735 GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVK 814 (866)
T ss_pred CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeE
Confidence 44566789999999999999999986 4456778889999999999999999999999999999999999999876655
Q ss_pred EE
Q 001155 700 LY 701 (1136)
Q Consensus 700 l~ 701 (1136)
++
T Consensus 815 v~ 816 (866)
T COG0553 815 VY 816 (866)
T ss_pred EE
Confidence 54
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.57 E-value=1.4e-07 Score=114.56 Aligned_cols=354 Identities=17% Similarity=0.145 Sum_probs=193.2
Q ss_pred CCCCCcccccccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001155 325 GNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINA 404 (1136)
Q Consensus 325 ~p~~s~r~~~~~~e~l~vp~~~~~~~~~~~~~i~i~~~~~~~~~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~ 404 (1136)
.+|..+..+|..|-...+|..+... ..+. ...+..|..+.+...++...++... +-...-..-++++.+
T Consensus 321 i~wapP~anwn~w~A~nide~~la~--~~~~--------s~~q~~~~~~~~~~d~e~~~~~a~r-e~lpva~~~~~i~q~ 389 (1282)
T KOG0921|consen 321 ISWAPPLQNWNPWRASNIDEEPLAF--MSME--------SISQRIMEKERFKRDEALDKITAQR-EELPVAQYRSEILQA 389 (1282)
T ss_pred CCCCCccccccccccccCccccccc--cccc--------Ccccchhhhhhhhcccchhhhhhhh-hhCcHHHHHHHHHHH
Confidence 7899999999999998888876552 1111 1123445444444444444333222 111222334556666
Q ss_pred HHCCCcEEEEccCCChHHHH---HHhhhhhCCC-----cEEEEccChhhHHHHHHHHHHc-CCCeEEecCCCCHHHHHHH
Q 001155 405 TMSGHDVFVLMPTGGGKSLT---YQLPALICPG-----ITLVISPLVSLIQDQIMHLLQA-NIPATFLSGNMEWTEQQEI 475 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~---y~LpaL~~~g-----~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~~~~~~~~~~ 475 (1136)
+..+.-++|...||+|||.- |+|-.+...+ -+.+--|++--+.-..+.+.+. +-.++-..|-.. . ....
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v-R-f~Sa 467 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV-R-FDSA 467 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc-c-cccc
Confidence 66777799999999999975 5666665533 2444557665555555555432 111111111100 0 0000
Q ss_pred HHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhh--hhhhhccCCCCCEE
Q 001155 476 LRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQG--LGILKQKFPNTPVL 553 (1136)
Q Consensus 476 l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~--L~~l~~~~p~~~iv 553 (1136)
.. ...--|++||.+-+. +.+..- ...+.++|+||+|.- |--.++.. ++.++..+++..++
T Consensus 468 ~p-----rpyg~i~fctvgvll------r~~e~g--lrg~sh~i~deiher-----dv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 468 TP-----RPYGSIMFCTVGVLL------RMMENG--LRGISHVIIDEIHER-----DVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred cc-----ccccceeeeccchhh------hhhhhc--ccccccccchhhhhh-----ccchHHHHHHHHhhhccchhhhhh
Confidence 00 023458899988774 333221 223789999999984 33333322 35566667777777
Q ss_pred EEeeccchhhHH------------------------HHHHHhcCcc------eEEecccCCCC---------chh---hh
Q 001155 554 ALTATATASVKE------------------------DVVQALGLVN------CIIFRQSFNRP---------NLW---MD 591 (1136)
Q Consensus 554 ~LSAT~~~~v~~------------------------dI~~~L~l~~------~~i~~~s~~r~---------nl~---~~ 591 (1136)
++|||....... ++...+.... ...+...+..+ |.. ..
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 888876554221 1111110000 00000000000 000 00
Q ss_pred HH----------------HHHHHHHhc------ccccchhhH-----HHHHHHHh-------hcCCeEEEEcCCCCHHHH
Q 001155 592 CE----------------KVAERLQVG------LSYGHFFLL-----KEFYVVSL-------ECGHKAAFYHGSIDPAQR 637 (1136)
Q Consensus 592 ~e----------------~lae~L~~~------l~~~~~~~~-----~~~~~~l~-------~~g~~v~~~Hagm~~~dR 637 (1136)
++ .+.+.+... ..+..++.. ..+...++ ...+.+...|..+...+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 00 011111110 000000000 00000000 123557778999999999
Q ss_pred HHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC------------------CHhHHHHHhcccCCCCCCcEEE
Q 001155 638 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK------------------SIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 638 ~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~------------------Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..+.+....|..++|++|.++..-|.+-++.+||..+.-+ |..+..|+.||+||. ++|.|.
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f 768 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCF 768 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccc
Confidence 9999999999999999999999999999999988444322 566789999999997 789998
Q ss_pred EEeccccHHHH
Q 001155 700 LYYSYSDFIRV 710 (1136)
Q Consensus 700 l~~~~~D~~~~ 710 (1136)
.+++...+..+
T Consensus 769 ~lcs~arF~~l 779 (1282)
T KOG0921|consen 769 HLCSRARFEAL 779 (1282)
T ss_pred cccHHHHHHHH
Confidence 88876555443
No 163
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.46 E-value=1.3e-06 Score=97.52 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=96.3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH-
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ- 455 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~- 455 (1136)
-+.++.++.+|+ .+++.|.-++-.+..|+ |+.+.||-|||++..+|+... +..+-||+....|+..-...+..
T Consensus 65 l~rea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 65 LVREAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHH
Confidence 455666677675 47888888887777776 999999999999998888743 66788889999998765555543
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhh---hhccceeeeecccccc
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA---RELLARIVIDEAHCVS 527 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~---~~~l~lVVIDEAH~ls 527 (1136)
+|+.+..+.++.+...+...+ ..+|+|+|...+. .|.+...+..... ...+.++||||||.++
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y--------~~dI~Y~t~~~~~-fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAY--------AADIVYGTNSEFG-FDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHH--------HSSEEEEEHHHHH-HHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhhccccCccccCHHHHHHHH--------hCcccccccchhh-HHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 499999999998876655554 4679999999885 3555554432222 2458899999999884
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.43 E-value=6.2e-06 Score=102.76 Aligned_cols=135 Identities=18% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHH---HHHHHHH
Q 001155 381 LEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQ---DQIMHLL 454 (1136)
Q Consensus 381 l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~---dqv~~L~ 454 (1136)
..++-+.++|+.. +=-+.+-.+.....-++-|-||-|||+++.+|+.+. +..+.||.-.--||. +|...+-
T Consensus 69 ~REa~~Rvlg~~~---~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 69 VREASKRVLGMRH---FDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred hhHHHHHhcCCCh---hhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 4455566667543 334555555555567999999999999999999854 555677777777755 3444443
Q ss_pred -HcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhh---hhhccceeeeecccccc
Q 001155 455 -QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLN---ARELLARIVIDEAHCVS 527 (1136)
Q Consensus 455 -~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~---~~~~l~lVVIDEAH~ls 527 (1136)
-+|+.+++...+++..++...+ .++|.|+|-..+- .|.+...+.... ....+.+.|+||++-|+
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY--------~~DItY~TnnElG-FDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAY--------ACDITYGTNNELG-FDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHH--------hcCceeccccccC-cchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 3499999999999888887765 6789999998873 355444332111 11237889999999774
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.41 E-value=2.3e-06 Score=104.61 Aligned_cols=78 Identities=21% Similarity=0.102 Sum_probs=67.9
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcC----CceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 624 KAAFYHGSIDPAQRAFVQKQWSKD----EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 624 ~v~~~Hagm~~~dR~~i~~~F~~g----~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
...-+.|......|..+.+.|.+- .--.||+|.|.+.|||+-+...||.||..|++.--.|-|=|+-|.|+..-|+
T Consensus 1190 DyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1190 DYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred ceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCcee
Confidence 344567888999999999999863 2346999999999999999999999999999999999999999999977776
Q ss_pred EE
Q 001155 700 LY 701 (1136)
Q Consensus 700 l~ 701 (1136)
+|
T Consensus 1270 iY 1271 (1567)
T KOG1015|consen 1270 IY 1271 (1567)
T ss_pred eh
Confidence 65
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.40 E-value=1.9e-07 Score=94.01 Aligned_cols=133 Identities=17% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCcEEEEccCCChHHHHHHhh----hhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhccc
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP----ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDY 483 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp----aL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~ 483 (1136)
|+-.+|-+.+|+|||--.+-- .+..+.++||+.|||.++.++.+.|....+.+. ..-..... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~--t~~~~~~~-----------~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFH--TNARMRTH-----------F 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEE--STTSS---------------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccC--ceeeeccc-----------c
Confidence 445788899999999753322 334689999999999999999999876543332 22111100 1
Q ss_pred CcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh
Q 001155 484 CKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 484 ~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
+..-|-++|...+. .+ +.+-......++||+||||...-+.--+|.....+ .......+|.+|||+|-..
T Consensus 71 g~~~i~vMc~at~~--~~----~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~----~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 71 GSSIIDVMCHATYG--HF----LLNPCRLKNYDVIIMDECHFTDPTSIAARGYLREL----AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp SSSSEEEEEHHHHH--HH----HHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHH----HHTTS-EEEEEESS-TT--
T ss_pred CCCcccccccHHHH--HH----hcCcccccCccEEEEeccccCCHHHHhhheeHHHh----hhccCeeEEEEeCCCCCCC
Confidence 45557778777653 22 22233345689999999998644332233322221 2223467999999998764
No 167
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.30 E-value=4.9e-06 Score=103.05 Aligned_cols=270 Identities=16% Similarity=0.165 Sum_probs=150.2
Q ss_pred cEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCc
Q 001155 410 DVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCK 485 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~ 485 (1136)
-.+|.+|.|+|||.+..-++-. ....+|+|+-.++|+.+...+|...++.-...+.+.... .+.. ..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~----~i~~-----~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY----IIDG-----RP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc----cccc-----cc
Confidence 3788999999999865443322 357899999999999999999988876422222221110 0000 13
Q ss_pred ceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhh----hhccCC-CCCEEEEeeccc
Q 001155 486 YKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGI----LKQKFP-NTPVLALTATAT 560 (1136)
Q Consensus 486 ~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~----l~~~~p-~~~iv~LSAT~~ 560 (1136)
.+-+++..+.|.+ + .. ......++|||||+--+.. |=|-+-++++.. +..... ...+|++-|++.
T Consensus 122 ~~rLivqIdSL~R---~---~~--~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 122 YDRLIVQIDSLHR---L---DG--SLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred cCeEEEEehhhhh---c---cc--ccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 4567777777631 1 11 1123478999999976643 213233222222 222222 345899999999
Q ss_pred hhhHHHHHHHhcCcceEEecccCCCCchh---------hhHH--------------------------------------
Q 001155 561 ASVKEDVVQALGLVNCIIFRQSFNRPNLW---------MDCE-------------------------------------- 593 (1136)
Q Consensus 561 ~~v~~dI~~~L~l~~~~i~~~s~~r~nl~---------~~~e-------------------------------------- 593 (1136)
....+.+...-+-.+..++...+.-++.. ...+
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 99877766643333333333332222111 0111
Q ss_pred --HHHHHHHhccccc----chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCc
Q 001155 594 --KVAERLQVGLSYG----HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV 667 (1136)
Q Consensus 594 --~lae~L~~~l~~~----~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V 667 (1136)
.+...|..+.... .......+.......+.++..+++.-+..+ +. .| ++.+|++=|.+...|+++-+.
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v~-~W--~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---VE-SW--KKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---cc-cc--cceeEEEEeceEEEEeccchh
Confidence 1122222111111 111112222333345677888877665552 22 23 568999999999999998654
Q ss_pred cE--EEEc--CCC--CCHhHHHHHhcccCCCCCCcEEEEEeccc
Q 001155 668 RF--VIHH--SLP--KSIEGYHQECGRAGRDGQRSSCVLYYSYS 705 (1136)
Q Consensus 668 ~~--VIh~--d~P--~Sie~YiQriGRAGR~G~~g~~il~~~~~ 705 (1136)
.| |.-| ... .++.+.+|++||.-.. ...+-+++++..
T Consensus 346 HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 346 HFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred hceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 32 2222 222 2566799999999655 355666666654
No 168
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.05 E-value=0.00037 Score=82.74 Aligned_cols=229 Identities=10% Similarity=0.131 Sum_probs=143.8
Q ss_pred cCcceEEEeChhhhhchHHHHH----HHHhhhhhhccceeeeeccccccc--cCCC-------------C-ccchhhhhh
Q 001155 483 YCKYKLLYVTPEKVAKSDVLLR----QLESLNARELLARIVIDEAHCVSQ--WGHD-------------F-RPDYQGLGI 542 (1136)
Q Consensus 483 ~~~~~ILV~TPEkL~~~d~l~r----~l~~l~~~~~l~lVVIDEAH~ls~--wGhd-------------f-R~~y~~L~~ 542 (1136)
....+|||++|=-|. .+.. +-........|.++|||.||.|.- |-|- . -.++.+++.
T Consensus 129 Fy~SDIIiASPLGLr---~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~ 205 (442)
T PF06862_consen 129 FYSSDIIIASPLGLR---MIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRP 205 (442)
T ss_pred cccCCEEEEChHHHH---HHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHH
Confidence 457889999997773 2222 223444556799999999998852 5431 0 123333332
Q ss_pred hhcc-CC--CCCEEEEeeccchhhHHHHHHHh-cCcceEEecccCC--------------------CCchh--------h
Q 001155 543 LKQK-FP--NTPVLALTATATASVKEDVVQAL-GLVNCIIFRQSFN--------------------RPNLW--------M 590 (1136)
Q Consensus 543 l~~~-~p--~~~iv~LSAT~~~~v~~dI~~~L-~l~~~~i~~~s~~--------------------r~nl~--------~ 590 (1136)
+.-. .. -.|+|++|+..++....-+.... +....+.+..... -+++. .
T Consensus 206 w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~y 285 (442)
T PF06862_consen 206 WYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKY 285 (442)
T ss_pred HHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHH
Confidence 2111 11 25789999999998766555522 2221111111111 11111 1
Q ss_pred hHHHHHHHHH-h------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeec--ccccc
Q 001155 591 DCEKVAERLQ-V------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV--AFGMG 661 (1136)
Q Consensus 591 ~~e~lae~L~-~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~--alg~G 661 (1136)
-.+.+...+. . ++.....+..-.+..++...++..+.+|--.+..+-.+.-..|.+|+.+||+-|. -+=+-
T Consensus 286 F~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrR 365 (442)
T PF06862_consen 286 FTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRR 365 (442)
T ss_pred HHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhh
Confidence 1222333333 1 1111112222333444557789999999999999999999999999999999996 34566
Q ss_pred ccCCCccEEEEcCCCCCHhHHHHHhcccCCCC------CCcEEEEEeccccHHHHHHHH
Q 001155 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDG------QRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G------~~g~~il~~~~~D~~~~~~li 714 (1136)
..+..++.||.|.+|..+.=|-..++-.+... ....|.++|+.-|...+.+++
T Consensus 366 y~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 366 YRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred ceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 77889999999999999987766665444433 268999999999998888876
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.01 E-value=3e-05 Score=88.16 Aligned_cols=90 Identities=26% Similarity=0.268 Sum_probs=64.1
Q ss_pred hCCCCCCHHHHHHHHH----HHCCCcEEEEccCCChHHHHHHhhhhh----CCC-----cEEEEccChhhHHHHHHHHHH
Q 001155 389 FGNHSFRPNQREIINA----TMSGHDVFVLMPTGGGKSLTYQLPALI----CPG-----ITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~----il~g~dvLV~APTGsGKTl~y~LpaL~----~~g-----~~LVIsPtraL~~dqv~~L~~ 455 (1136)
|.|. ++|.|.+.+.. +..|.++++.||||+|||++|++|++. .+. +++|.++|.+++.+.+..+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4555 49999995554 446889999999999999999999973 233 799999999998887787776
Q ss_pred cCCCeEEecCCCCHHHHHHHHHHHh
Q 001155 456 ANIPATFLSGNMEWTEQQEILRELN 480 (1136)
Q Consensus 456 ~gI~v~~L~g~~~~~~~~~~l~~l~ 480 (1136)
..... .+.++.+.....+.+.++.
T Consensus 84 ~~~~~-~~~~~~t~sq~~q~~~el~ 107 (289)
T smart00489 84 LMQKV-EYESDEESEKQAQLLHELG 107 (289)
T ss_pred ccccc-ceecccchhHHHHHHHHHh
Confidence 53332 2334444444455555544
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.01 E-value=3e-05 Score=88.16 Aligned_cols=90 Identities=26% Similarity=0.268 Sum_probs=64.1
Q ss_pred hCCCCCCHHHHHHHHH----HHCCCcEEEEccCCChHHHHHHhhhhh----CCC-----cEEEEccChhhHHHHHHHHHH
Q 001155 389 FGNHSFRPNQREIINA----TMSGHDVFVLMPTGGGKSLTYQLPALI----CPG-----ITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~----il~g~dvLV~APTGsGKTl~y~LpaL~----~~g-----~~LVIsPtraL~~dqv~~L~~ 455 (1136)
|.|. ++|.|.+.+.. +..|.++++.||||+|||++|++|++. .+. +++|.++|.+++.+.+..+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4555 49999995554 446889999999999999999999973 233 799999999998887787776
Q ss_pred cCCCeEEecCCCCHHHHHHHHHHHh
Q 001155 456 ANIPATFLSGNMEWTEQQEILRELN 480 (1136)
Q Consensus 456 ~gI~v~~L~g~~~~~~~~~~l~~l~ 480 (1136)
..... .+.++.+.....+.+.++.
T Consensus 84 ~~~~~-~~~~~~t~sq~~q~~~el~ 107 (289)
T smart00488 84 LMQKV-EYESDEESEKQAQLLHELG 107 (289)
T ss_pred ccccc-ceecccchhHHHHHHHHHh
Confidence 53332 2334444444455555544
No 171
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.90 E-value=0.0002 Score=93.27 Aligned_cols=139 Identities=22% Similarity=0.184 Sum_probs=88.2
Q ss_pred CcEEEEccCCChHHHHHHhhh-----hhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhccc
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA-----LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDY 483 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa-----L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~ 483 (1136)
+..+|.=-||||||++-.-.+ +.....++||+-.+.|-.|....+...+..........+..+-...+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~----- 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLED----- 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhc-----
Confidence 358999999999998633222 2336789999999999999999998875433221133333333333332
Q ss_pred CcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh
Q 001155 484 CKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 484 ~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
+.-.|||||-.++. .......... ....=-+||+||||+ ++.|. . -..+...+++...+|||+|+--.-
T Consensus 349 ~~~~ii~TTIQKf~--~~~~~~~~~~-~~~~~ivvI~DEaHR-SQ~G~--~-----~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 349 GKGKIIVTTIQKFN--KAVKEDELEL-LKRKNVVVIIDEAHR-SQYGE--L-----AKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred CCCcEEEEEecccc--hhhhcccccc-cCCCcEEEEEechhh-ccccH--H-----HHHHHHHhccceEEEeeCCccccc
Confidence 34589999999995 2222210001 111123588999998 55552 1 123467788899999999976543
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.86 E-value=9e-05 Score=94.52 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=41.9
Q ss_pred CceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCC
Q 001155 648 EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD 692 (1136)
Q Consensus 648 ~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~ 692 (1136)
.++.|++-.+|..|-|-|+|=++....-..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999999999999888999999999999994
No 173
>PRK10829 ribonuclease D; Provisional
Probab=97.83 E-value=3.5e-05 Score=90.22 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
-.++.+|-.||.++|++ .++||+.|++|.+|.+||++.|+|.++|.++ |+.+..+.+||+.++++|++...
T Consensus 214 lavl~~L~~WRe~~Ar~--~d~p~~~Vl~d~~L~~lA~~~P~~~~~L~~~-~~~~~~~r~~g~~ll~~i~~a~~ 284 (373)
T PRK10829 214 LACLQLLADWRLRKARE--RDLAVNFVVREEHLWQVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVAKAQA 284 (373)
T ss_pred HHHHHHHHHHHHHHHHH--hCCCcceecChHHHHHHHHhCCCCHHHHHhc-cCChHhHHhhHHHHHHHHHHHhc
Confidence 46799999999999999 8999999999999999999999999999999 99999999999999999998653
No 174
>TIGR01388 rnd ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.
Probab=97.81 E-value=4.1e-05 Score=89.84 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
-.++.+|-.||.++|++ .++||+.|++|..|.+||++.|+|.++|.++ |+.+..+.+||+.++++|++...
T Consensus 210 l~~l~~L~~wRe~~A~~--~d~p~~~il~d~~l~~lA~~~P~~~~~l~~~-~~~~~~~r~~~~~l~~~i~~a~~ 280 (367)
T TIGR01388 210 LAVLQALAAWREREARE--RDLPRNFVLKEEALWELARQAPGNLTELASL-GPKGSEIRKHGDTLLALVKTALA 280 (367)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCcceeeCHHHHHHHHHhCCCCHHHHHhc-cCChHHHHhhHHHHHHHHHHHhh
Confidence 46789999999999999 8999999999999999999999999999999 99999999999999999998654
No 175
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00096 Score=78.67 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=74.8
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeec--cccccccCCCccEEEEcCCCCCHhHH---HHHhcccCCCC
Q 001155 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV--AFGMGINKPDVRFVIHHSLPKSIEGY---HQECGRAGRDG 693 (1136)
Q Consensus 619 ~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~--alg~GIDlP~V~~VIh~d~P~Sie~Y---iQriGRAGR~G 693 (1136)
.+.++..+.+|.--+..+-.+.-+.|..|...||+-|. -+=+-.++..|+.||.|.+|..+.=| +-+.+|+.-.|
T Consensus 573 K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 573 KKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred hhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 34455666666666666667778899999999999996 35677889999999999999998644 66777775444
Q ss_pred ----CCcEEEEEeccccHHHHHHHH
Q 001155 694 ----QRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 694 ----~~g~~il~~~~~D~~~~~~li 714 (1136)
....|.++|+.-|...+..++
T Consensus 653 n~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 653 NTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred CccccceEEEEEeechhhHHHHHhh
Confidence 357899999999998887765
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.34 E-value=0.00083 Score=80.86 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=65.1
Q ss_pred HhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh----hCCCcEEEEccChhhHHHHHHHHHHcCCCeEE
Q 001155 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL----ICPGITLVISPLVSLIQDQIMHLLQANIPATF 462 (1136)
Q Consensus 387 ~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL----~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~ 462 (1136)
..+|+..|+.-|..|+.++|...=.||.+|.|+|||.+..-.++ ...+.+||++|..--+.+..+.+.+.|+++.-
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvR 483 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVR 483 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEee
Confidence 34588999999999999999999999999999999975321111 24789999999998888888888888988876
Q ss_pred ecC
Q 001155 463 LSG 465 (1136)
Q Consensus 463 L~g 465 (1136)
+..
T Consensus 484 l~a 486 (935)
T KOG1802|consen 484 LCA 486 (935)
T ss_pred eeh
Confidence 554
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.21 E-value=0.0069 Score=66.22 Aligned_cols=152 Identities=26% Similarity=0.323 Sum_probs=87.4
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHC---CCcEEEEccCCChHHHHHHhhhhh----CC-CcEEEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMS---GHDVFVLMPTGGGKSLTYQLPALI----CP-GITLVI 439 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~---g~dvLV~APTGsGKTl~y~LpaL~----~~-g~~LVI 439 (1136)
..|+..++| ..+.- ++-+--.+|+.|.++...+.+ |+|.+..+-+|.|||.| ++|++. .+ ..+.+|
T Consensus 3 ~~w~p~~~P--~wLl~---E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~Lvrvi 76 (229)
T PF12340_consen 3 RNWDPMEYP--DWLLF---EIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVI 76 (229)
T ss_pred CCCCchhCh--HHHHH---HHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEE
Confidence 457766665 33322 222334689999999999885 67999999999999988 556553 23 345555
Q ss_pred ccChhhHHHHHHHHHHc-----CCCeEEecCCC--CHH-HHHHHHHHHh-cccCcceEEEeChhhhhchHHHHHHHHhh-
Q 001155 440 SPLVSLIQDQIMHLLQA-----NIPATFLSGNM--EWT-EQQEILRELN-SDYCKYKLLYVTPEKVAKSDVLLRQLESL- 509 (1136)
Q Consensus 440 sPtraL~~dqv~~L~~~-----gI~v~~L~g~~--~~~-~~~~~l~~l~-~~~~~~~ILV~TPEkL~~~d~l~r~l~~l- 509 (1136)
+|. +|..+....|.+. +-++..+.=+. ..+ .....+..+. .....-.|+++|||.+.. +....+..+
T Consensus 77 Vpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS--f~L~~le~l~ 153 (229)
T PF12340_consen 77 VPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS--FKLKGLERLQ 153 (229)
T ss_pred cCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH--HHHHHHHHHH
Confidence 554 7888877777664 33444333221 111 1111122111 111244599999999863 222222111
Q ss_pred --------------hhhhccceeeeeccccccc
Q 001155 510 --------------NARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 510 --------------~~~~~l~lVVIDEAH~ls~ 528 (1136)
........=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1112245569999998754
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.16 E-value=0.0029 Score=78.48 Aligned_cols=46 Identities=24% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCC
Q 001155 647 DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRD 692 (1136)
Q Consensus 647 g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~ 692 (1136)
...+.|++--+|-.|-|-|+|=.|+-.....|..+=.|++||.-|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4589999999999999999999999999999999999999999993
No 179
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.10 E-value=0.0012 Score=84.02 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=59.4
Q ss_pred hhCCCCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhhh----CC--CcEEEEccChhhHHHHHHHHHHc
Q 001155 388 VFGNHSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPALI----CP--GITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL~----~~--g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.|.|..++|.|.+.+..+. .+.++++.||||+|||++.+.|+|. .+ .+++|.+.|.+=+.|.+++|++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4678889999999988765 5788999999999999999888884 23 58999999999999999999873
No 180
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.10 E-value=0.0014 Score=83.34 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHH---CC------CcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHH
Q 001155 393 SFRPNQREIINATM---SG------HDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQI 450 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il---~g------~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv 450 (1136)
.+|+-|.+.+..+. .+ +.++|-||||+|||++|++|++.. +.++||=+.|++|-+|.+
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 68999999766654 33 568899999999999999999863 667777778999976554
No 181
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner. Sgs1 has a HRDC (helicase and RNaseD C-terminal) domain which modulates the helicase function via auxiliary contacts to DNA []. The proteins matching this entry are restricted to fungi (Saccharomycetaceae). ; PDB: 1D8B_A.
Probab=97.00 E-value=0.0014 Score=59.79 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYG 1012 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG 1012 (1136)
...|++|++.|-.++.+ .|.|--..++|.+|++||..+|.|.+|+.++.|+++...++|-
T Consensus 6 ~~aY~~Lr~~~~~~~~~--~n~p~~~f~sd~~LKk~A~~LP~te~eF~~l~g~~~~~~~kFk 65 (80)
T PF11408_consen 6 TSAYEKLREISINLSNR--MNPPNDNFMSDTILKKMATKLPTTEEEFSKLVGINEQQRKKFK 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHS--SSS--S-SS-HHHHHHHHHH---SHHHHGGGS---HHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhc--cCCCccccCCHHHHHHHHHHCCCCHHHHHHhcCCcHHHHHHHH
Confidence 45799999999999999 5555555669999999999999999999999999988877774
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.94 E-value=0.0034 Score=75.66 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHCCCc-EEEEccCCChHHHHHHhh---hhhCCCcEEEEccChhhHHHHHHHHH
Q 001155 392 HSFRPNQREIINATMSGHD-VFVLMPTGGGKSLTYQLP---ALICPGITLVISPLVSLIQDQIMHLL 454 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~d-vLV~APTGsGKTl~y~Lp---aL~~~g~~LVIsPtraL~~dqv~~L~ 454 (1136)
..+++-|.+|+..+.+.++ .++.+|+|+|||.+-..- ++..+.++||.+|+..-+..++++|.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 5689999999999998866 788899999999763322 23458899999999999999999765
No 183
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.84 E-value=0.0023 Score=68.85 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHCCCc-EEEEccCCChHHH--HHHhhhh---------hCCCcEEEEccChhhHHHHHHHHHH
Q 001155 393 SFRPNQREIINATMSGHD-VFVLMPTGGGKSL--TYQLPAL---------ICPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~d-vLV~APTGsGKTl--~y~LpaL---------~~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
+|++-|.+|+..++.... .+|.+|.|+|||. +.++..+ ..+.++||++|+..-+.+.+..|.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999988 9999999999994 3444444 3367899999999999999999887
No 184
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=96.51 E-value=0.05 Score=66.85 Aligned_cols=78 Identities=23% Similarity=0.203 Sum_probs=66.7
Q ss_pred cCCCCHHHHHHHHHHHhcC--C-ceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccc
Q 001155 629 HGSIDPAQRAFVQKQWSKD--E-INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 705 (1136)
Q Consensus 629 Hagm~~~dR~~i~~~F~~g--~-i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~ 705 (1136)
.|-.+..+|++.+++|.+- - .-++++|.+...|||+-...-+|.|+..+++.--.|.+-|.-|-|+...|++|----
T Consensus 768 dG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm 847 (1387)
T KOG1016|consen 768 DGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM 847 (1387)
T ss_pred cCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh
Confidence 5667889999999999863 2 368899999999999988889999999999999999999999999998898875433
Q ss_pred c
Q 001155 706 D 706 (1136)
Q Consensus 706 D 706 (1136)
|
T Consensus 848 D 848 (1387)
T KOG1016|consen 848 D 848 (1387)
T ss_pred h
Confidence 3
No 185
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.32 E-value=0.014 Score=73.61 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHCCCc-EEEEccCCChHHHH--HHhhhhh-CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCC
Q 001155 392 HSFRPNQREIINATMSGHD-VFVLMPTGGGKSLT--YQLPALI-CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNM 467 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~d-vLV~APTGsGKTl~--y~LpaL~-~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~ 467 (1136)
..|+.-|++|+-.++..+| .+|.+=+|+|||.+ .++-+|. .+.++|+.+=|-+-+....-.|...++.+.-|....
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEE 747 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCcc
Confidence 4789999999999998877 88888899999964 4454544 477888888998889999999999988877666654
Q ss_pred CHHHHHH-----------HHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 468 EWTEQQE-----------ILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 468 ~~~~~~~-----------~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
......+ .+..+......+.|+.+|==-+.. -+|. ...+++.|||||-.|+.
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-plf~--------~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-PLFV--------NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-hhhh--------ccccCEEEEcccccccc
Confidence 3322221 122222333577888887554431 1221 12389999999998854
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.30 E-value=0.0032 Score=67.97 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhh
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSL 445 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL 445 (1136)
...+..|..++.+++...-+++.+|.|+|||+.++..++.. -.+.+|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 45689999999999977779999999999999887776632 2467888888754
No 187
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.19 E-value=0.015 Score=65.89 Aligned_cols=161 Identities=19% Similarity=0.161 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHH----------CCCcEEEEccCCChHHHHH--Hh-hhhhCCC-cEEEEccChhhHHHHHHHHHHcCC
Q 001155 393 SFRPNQREIINATM----------SGHDVFVLMPTGGGKSLTY--QL-PALICPG-ITLVISPLVSLIQDQIMHLLQANI 458 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il----------~g~dvLV~APTGsGKTl~y--~L-paL~~~g-~~LVIsPtraL~~dqv~~L~~~gI 458 (1136)
.|...|.+++--+. .+.-.|+--.||.||--.. ++ --.+++. ++|+|+..-.|..|..+.|...|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 46788888775443 1234677779999997542 22 1223343 699999999999999999998754
Q ss_pred C---eEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchH--------HHHHHHHhhhhhhccceeeeecccccc
Q 001155 459 P---ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSD--------VLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 459 ~---v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d--------~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
. +..++.- .... .. .-.-.||++|...|.... .+...+.++. ...=.+||+||||...
T Consensus 117 ~~i~v~~l~~~-~~~~---~~------~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g-~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 117 DNIPVHPLNKF-KYGD---II------RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCG-EDFDGVIVFDECHKAK 185 (303)
T ss_pred Ccccceechhh-ccCc---CC------CCCCCccchhHHHHHhHHhccCCccchHHHHHHHHh-cCCCceEEeccchhcC
Confidence 3 3322221 0000 00 014458999999885321 1111111221 1123579999999985
Q ss_pred ccCCCC-ccch--hhhhhhhccCCCCCEEEEeeccchhhH
Q 001155 528 QWGHDF-RPDY--QGLGILKQKFPNTPVLALTATATASVK 564 (1136)
Q Consensus 528 ~wGhdf-R~~y--~~L~~l~~~~p~~~iv~LSAT~~~~v~ 564 (1136)
.....- .+.- .....+...+|+.+++..|||......
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPR 225 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCc
Confidence 421100 0111 123456778899999999999877654
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=96.18 E-value=0.011 Score=53.86 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHCCCc-EEEEccCCChHHHHHH-hh-hhh-C----CCcEEEEccChhhHHHHHHHH
Q 001155 401 IINATMSGHD-VFVLMPTGGGKSLTYQ-LP-ALI-C----PGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 401 aI~~il~g~d-vLV~APTGsGKTl~y~-Lp-aL~-~----~g~~LVIsPtraL~~dqv~~L 453 (1136)
++...+.+.. ++|.+|.|+|||.+.. +. .+. . +..++|++|++..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4554444444 5569999999994422 22 222 1 668999999999998777777
No 189
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.06 E-value=0.081 Score=67.52 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=91.5
Q ss_pred CCEEEEeeccchh-hHHHHHHHhcCcc-----eEEecccCCC--------------C-chhhhHHHHHHHHHhccc----
Q 001155 550 TPVLALTATATAS-VKEDVVQALGLVN-----CIIFRQSFNR--------------P-NLWMDCEKVAERLQVGLS---- 604 (1136)
Q Consensus 550 ~~iv~LSAT~~~~-v~~dI~~~L~l~~-----~~i~~~s~~r--------------~-nl~~~~e~lae~L~~~l~---- 604 (1136)
..+|++|||++.. ....+.+.+|+.. ...+..+|+. | +.....+.+++.+...+.
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~gg 536 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHKG 536 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC
Confidence 4589999999863 2345566778753 2222233321 1 111223344444433221
Q ss_pred ----ccchhhHHHHHHHHhh-cCCeEEEEcCCCCHHHHHHHHHHHh----cCCceEEEeeccccccccCCC--ccEEEEc
Q 001155 605 ----YGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWS----KDEINIICATVAFGMGINKPD--VRFVIHH 673 (1136)
Q Consensus 605 ----~~~~~~~~~~~~~l~~-~g~~v~~~Hagm~~~dR~~i~~~F~----~g~i~VLVAT~alg~GIDlP~--V~~VIh~ 673 (1136)
+.....++.++..+.. .+..+ ..++. ..|..+++.|+ .++-.||++|..|..|||+|+ ++.||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 1122233444444332 23333 33553 25677776676 467789999999999999986 6888877
Q ss_pred CCCCC------------------------------HhHHHHHhcccCCCCC-CcEEEEEeccccHHHHHHHHhcCcC
Q 001155 674 SLPKS------------------------------IEGYHQECGRAGRDGQ-RSSCVLYYSYSDFIRVKHMISQGVA 719 (1136)
Q Consensus 674 d~P~S------------------------------ie~YiQriGRAGR~G~-~g~~il~~~~~D~~~~~~li~~~~~ 719 (1136)
.+|.. +..+.|-+||.=|... .|..+++=..--...|.+.+-+.+|
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhCC
Confidence 77741 1144688899999755 4543333233233445444444444
No 190
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.028 Score=65.04 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
......|-.||...|++ .++|+-.|+.|..|.++|+..|.+..+|..+.++++ -..++|..++.+|.+...
T Consensus 210 la~l~~La~wRe~~Ar~--rd~~~~~vl~de~i~~~a~~~P~~~~~l~~l~~~~~-~~~~~~~~l~~~~~~a~~ 280 (361)
T COG0349 210 LAVLRELAAWREREARE--RDLARNFVLKDEALWELARYTPKNLKELDALGLIPK-ERRRHGKLLLALLANALA 280 (361)
T ss_pred HHHHHHHHHHHHHHHHH--hccccccccchhHHHHHHHhCCCCHHHHHhccCCcc-cchhhhHHHHHHHHHHHh
Confidence 56788999999999999 999999999999999999999999999999999999 888999999999987553
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.49 E-value=0.011 Score=58.19 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=12.6
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
++-++|.+|+|+|||.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 456899999999999764
No 192
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.45 E-value=0.017 Score=68.03 Aligned_cols=51 Identities=27% Similarity=0.388 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHH------HCCCcEEEEccCCChHHHHHHh--hhhhC-CCcEEEEccCh
Q 001155 393 SFRPNQREIINAT------MSGHDVFVLMPTGGGKSLTYQL--PALIC-PGITLVISPLV 443 (1136)
Q Consensus 393 ~lrpiQ~eaI~~i------l~g~dvLV~APTGsGKTl~y~L--paL~~-~g~~LVIsPtr 443 (1136)
+|++-|++++..+ ..+..++|.+|-|+|||.++-. -.+.. +..+++++||-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg 60 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTG 60 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchH
Confidence 3788899998888 4677899999999999987532 22222 45678888884
No 193
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.39 E-value=0.054 Score=68.29 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHCC-CcEEEEccCCChHHHHH--Hhhh-hhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCC
Q 001155 392 HSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTY--QLPA-LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGN 466 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g-~dvLV~APTGsGKTl~y--~Lpa-L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~ 466 (1136)
..|++.|.+|+..++.. ..++|.+|+|+|||.+. ++-. +..+.++|+++|+..-+.+.+..+...++++..+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 35799999999999876 56889999999999643 2222 3346789999999999999999998877777766654
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.14 Score=60.77 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCcEEEEccCCChHHHHHH-hhhhh------CCCcEEEEc--cChhhHHHHHHHHHH-cCCCeEEecCCCCHHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPALI------CPGITLVIS--PLVSLIQDQIMHLLQ-ANIPATFLSGNMEWTEQQEILR 477 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL~------~~g~~LVIs--PtraL~~dqv~~L~~-~gI~v~~L~g~~~~~~~~~~l~ 477 (1136)
...+++++|||+|||.+.. |.... .+..+.+|. +.+.-+.+|...+.. .|+++....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~------------- 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE------------- 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC-------------
Confidence 3568999999999997643 32221 122333333 445556666666555 355443211
Q ss_pred HHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccC-CC-CCEEEE
Q 001155 478 ELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PN-TPVLAL 555 (1136)
Q Consensus 478 ~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~-p~-~~iv~L 555 (1136)
+++.+ ...+.. ....++|+||++.+... + .....++..+.... +. ..++.|
T Consensus 241 --------------~~~~l------~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVl 293 (388)
T PRK12723 241 --------------SFKDL------KEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAV 293 (388)
T ss_pred --------------cHHHH------HHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEE
Confidence 12222 111111 23478999999988521 1 11123444444332 22 457899
Q ss_pred eeccchhhHHHHHHHhc
Q 001155 556 TATATASVKEDVVQALG 572 (1136)
Q Consensus 556 SAT~~~~v~~dI~~~L~ 572 (1136)
+||.......++.....
T Consensus 294 sat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 294 SSTTKTSDVKEIFHQFS 310 (388)
T ss_pred cCCCCHHHHHHHHHHhc
Confidence 99998877776666543
No 195
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.23 E-value=0.055 Score=67.98 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhh
Q 001155 393 SFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL 430 (1136)
++++.|...+..++ ...+.++..|||+|||++-+-..|
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 46888988777665 467899999999999987554433
No 196
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.08 E-value=0.043 Score=64.27 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=33.8
Q ss_pred cEEEEccCCChHHHHHHhhhh-h----CCCcEEEEccChhhHHHHHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQLPAL-I----CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL-~----~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
-+||.+..|+|||++++--+. + ....++++++..+|+......+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 378899999999998653332 2 367889999999998755555544
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.05 E-value=0.13 Score=64.38 Aligned_cols=75 Identities=19% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCC-CCHHHHHHHHHHHCCCcEEEEccCCChHHHH--HHhhhhhC-----CCcEEEEccChhhHHHHH
Q 001155 379 KKLEANNKKVFGNHS-FRPNQREIINATMSGHDVFVLMPTGGGKSLT--YQLPALIC-----PGITLVISPLVSLIQDQI 450 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~-lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~--y~LpaL~~-----~g~~LVIsPtraL~~dqv 450 (1136)
..+...+.+.|+... ..++|+.|+..++.++-++|.++.|+|||.+ .++..+.. ...+++++||---+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 455566777776542 3589999999999998999999999999975 33444422 235778899977766544
Q ss_pred HHH
Q 001155 451 MHL 453 (1136)
Q Consensus 451 ~~L 453 (1136)
+.+
T Consensus 217 e~~ 219 (615)
T PRK10875 217 ESL 219 (615)
T ss_pred HHH
Confidence 444
No 198
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.01 E-value=0.064 Score=60.50 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=50.3
Q ss_pred HHHHHHhcCCceEEEeeccccccccCCC--------ccEEEEcCCCCCHhHHHHHhcccCCCCCC
Q 001155 639 FVQKQWSKDEINIICATVAFGMGINKPD--------VRFVIHHSLPKSIEGYHQECGRAGRDGQR 695 (1136)
Q Consensus 639 ~i~~~F~~g~i~VLVAT~alg~GIDlP~--------V~~VIh~d~P~Sie~YiQriGRAGR~G~~ 695 (1136)
...+.|.+|+..|+|.+.+.+.||-+.+ -|+-|...+|+|....+|..||+.|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 4567899999999999999999998864 35667888999999999999999999883
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.93 E-value=0.16 Score=54.75 Aligned_cols=127 Identities=20% Similarity=0.172 Sum_probs=61.7
Q ss_pred EEEEccCCChHHHHHH-hhhh--hCCCcEEEEc--cChhhHHHHHHHHHHc-CCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 411 VFVLMPTGGGKSLTYQ-LPAL--ICPGITLVIS--PLVSLIQDQIMHLLQA-NIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~-LpaL--~~~g~~LVIs--PtraL~~dqv~~L~~~-gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
+++++|||+|||.+.. |.+. ..+.++.+|+ ..|.=+.+|.+.+.+. |+++.......+..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-------------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-------------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------------
Confidence 6889999999997532 2221 1133333333 3444455666666543 55544332222111
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccC-CCCCEEEEeeccchhh
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNTPVLALTATATASV 563 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~-p~~~iv~LSAT~~~~v 563 (1136)
+.+.+.+... .....++|+||-+-+. +.-......|..+.... |....+.++||.....
T Consensus 70 ---------------~~~~~~l~~~-~~~~~D~vlIDT~Gr~----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 70 ---------------EIAREALEKF-RKKGYDLVLIDTAGRS----PRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp ---------------HHHHHHHHHH-HHTTSSEEEEEE-SSS----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred ---------------HHHHHHHHHH-hhcCCCEEEEecCCcc----hhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 1111111111 1123677777776552 11112223344433333 4455788999998876
Q ss_pred HHHHHHHh
Q 001155 564 KEDVVQAL 571 (1136)
Q Consensus 564 ~~dI~~~L 571 (1136)
...+..+.
T Consensus 130 ~~~~~~~~ 137 (196)
T PF00448_consen 130 LEQALAFY 137 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555543
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.71 E-value=0.2 Score=51.22 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=41.1
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCC-ceEEEeeccccccccCCC--ccEEEEcCCCC
Q 001155 626 AFYHGSIDPAQRAFVQKQWSKDE-INIICATVAFGMGINKPD--VRFVIHHSLPK 677 (1136)
Q Consensus 626 ~~~Hagm~~~dR~~i~~~F~~g~-i~VLVAT~alg~GIDlP~--V~~VIh~d~P~ 677 (1136)
.++.-+....+...+++.|.... ..||++|.-++.|||+|+ .+.||...+|.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 45555666667899999998754 379999988999999997 47788777774
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.70 E-value=0.13 Score=50.26 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
++.+++.+|+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 667999999999999754
No 202
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.38 Score=56.98 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.1
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
+.+++++|||+|||....
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568999999999997643
No 203
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.51 E-value=0.29 Score=58.46 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=44.9
Q ss_pred hhCCCCCCHHHHHHHHHH---H-CCCcEEEEccCCChHHHHHHhhhh--h-----CCCcEEEEccChhhHHHHHHHHHH
Q 001155 388 VFGNHSFRPNQREIINAT---M-SGHDVFVLMPTGGGKSLTYQLPAL--I-----CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~i---l-~g~dvLV~APTGsGKTl~y~LpaL--~-----~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
+|.|...+|-|.+-+..+ + .+.+.++-||+|+|||.+-+--++ + ...+.||.+-|..=+...+.+|..
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 467788889887765443 3 466899999999999976432222 1 134677777776665555555543
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.42 E-value=0.063 Score=60.69 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhh---hhC----CCcEEEEccChhhHHHHHHHHHH
Q 001155 394 FRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA---LIC----PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~Lpa---L~~----~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
|++-|.+++.. ...+++|.|+.|||||.+.+-=+ +.. ...+|+|++|++.+.+...++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 57889999988 66689999999999998754222 222 45799999999999888877766
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.36 E-value=0.093 Score=50.68 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=26.3
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhCCC---cEEEEccChhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALICPG---ITLVISPLVSL 445 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~~g---~~LVIsPtraL 445 (1136)
+..+++.+|+|+|||.....-+..... .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 457899999999999876544443322 46777766544
No 206
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.21 E-value=0.23 Score=50.79 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=51.8
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCc---eEEEeecc--ccccccCCC--ccEEEEcCCCCC---------------------
Q 001155 627 FYHGSIDPAQRAFVQKQWSKDEI---NIICATVA--FGMGINKPD--VRFVIHHSLPKS--------------------- 678 (1136)
Q Consensus 627 ~~Hagm~~~dR~~i~~~F~~g~i---~VLVAT~a--lg~GIDlP~--V~~VIh~d~P~S--------------------- 678 (1136)
++.-+....+...+++.|.+..- .||+++.- +++|||+|+ ++.||...+|..
T Consensus 23 i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~ 102 (142)
T smart00491 23 VFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIR 102 (142)
T ss_pred EEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 33333334455788999987543 69999887 999999998 578888887741
Q ss_pred ----------HhHHHHHhcccCCCCCCcEEEEEe
Q 001155 679 ----------IEGYHQECGRAGRDGQRSSCVLYY 702 (1136)
Q Consensus 679 ----------ie~YiQriGRAGR~G~~g~~il~~ 702 (1136)
+..+.|.+||+=|....--+++++
T Consensus 103 ~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 103 PFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred cHHHHHHHHHHHHHHHHhCccccCccceEEEEEE
Confidence 124468888888876543344444
No 207
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.19 E-value=0.45 Score=61.06 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhc----CCceEEEee--ccccccccCCC--ccEEEEcCCCC
Q 001155 635 AQRAFVQKQWSK----DEINIICAT--VAFGMGINKPD--VRFVIHHSLPK 677 (1136)
Q Consensus 635 ~dR~~i~~~F~~----g~i~VLVAT--~alg~GIDlP~--V~~VIh~d~P~ 677 (1136)
.++..+++.|.. |.-.||+|+ ..+++|||+++ .+.||..++|.
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 578899999964 456799999 78999999998 68899999887
No 208
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=94.14 E-value=0.13 Score=53.86 Aligned_cols=70 Identities=26% Similarity=0.373 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCCceEEEeec--cccccccCCC--ccEEEEcCCCCC------------------------------H
Q 001155 634 PAQRAFVQKQWSKDEINIICATV--AFGMGINKPD--VRFVIHHSLPKS------------------------------I 679 (1136)
Q Consensus 634 ~~dR~~i~~~F~~g~i~VLVAT~--alg~GIDlP~--V~~VIh~d~P~S------------------------------i 679 (1136)
..++..+++.|..++-.||+|+. .+..|||+|+ ++.||...+|.. +
T Consensus 45 ~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (167)
T PF13307_consen 45 SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAI 124 (167)
T ss_dssp CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHH
T ss_pred cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHH
Confidence 56788999999999999999999 9999999996 778998888851 1
Q ss_pred hHHHHHhcccCCCCCCcEEEEEec
Q 001155 680 EGYHQECGRAGRDGQRSSCVLYYS 703 (1136)
Q Consensus 680 e~YiQriGRAGR~G~~g~~il~~~ 703 (1136)
....|.+||+-|....--++++++
T Consensus 125 ~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 125 RKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp HHHHHHHHCC--STT-EEEEEEES
T ss_pred HHHhhhcCcceeccCCcEEEEEEc
Confidence 134688999999866433344443
No 209
>PRK06526 transposase; Provisional
Probab=94.14 E-value=0.13 Score=57.64 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=17.9
Q ss_pred HHCCCcEEEEccCCChHHHHHH
Q 001155 405 TMSGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~y~ 426 (1136)
+-.+.++++++|+|+|||..+.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3457899999999999997543
No 210
>PRK08727 hypothetical protein; Validated
Probab=93.94 E-value=0.24 Score=54.75 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.2
Q ss_pred cEEEEccCCChHHHH
Q 001155 410 DVFVLMPTGGGKSLT 424 (1136)
Q Consensus 410 dvLV~APTGsGKTl~ 424 (1136)
-+++.+|+|+|||-.
T Consensus 43 ~l~l~G~~G~GKThL 57 (233)
T PRK08727 43 WLYLSGPAGTGKTHL 57 (233)
T ss_pred eEEEECCCCCCHHHH
Confidence 499999999999954
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=93.81 E-value=0.48 Score=55.29 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=31.5
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhc-cCCCCCEEEEeeccchhhHHHHHHH
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQ-KFPNTPVLALTATATASVKEDVVQA 570 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~-~~p~~~iv~LSAT~~~~v~~dI~~~ 570 (1136)
..++|+||.+.++. .-...+..|..+.. ..|+..++.++||........+..+
T Consensus 222 ~~DvVLIDTaGr~~----~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMH----TDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccC----CcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 36889999999863 12222333443333 2356667888998876655444433
No 212
>PRK08181 transposase; Validated
Probab=93.69 E-value=0.23 Score=56.14 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=25.4
Q ss_pred HCCCcEEEEccCCChHHHHHHhhh--hhCCCcEEEEccChhhHH
Q 001155 406 MSGHDVFVLMPTGGGKSLTYQLPA--LICPGITLVISPLVSLIQ 447 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y~Lpa--L~~~g~~LVIsPtraL~~ 447 (1136)
-.++++++++|+|+|||-.+...+ +...+..++..+...|+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 367899999999999995433221 223344444444445544
No 213
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.62 E-value=0.061 Score=67.24 Aligned_cols=171 Identities=20% Similarity=0.257 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHH--hhhh----hCCCcEEEEccChhhHH-HHHHHHHHcCCCe
Q 001155 392 HSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQ--LPAL----ICPGITLVISPLVSLIQ-DQIMHLLQANIPA 460 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~--LpaL----~~~g~~LVIsPtraL~~-dqv~~L~~~gI~v 460 (1136)
..+-++|.+.++.+. .+.+.++..+.|-|||...+ ++.+ ...+..|+++|.-..+. ...-.+..-.+.+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~v 373 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYV 373 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCccc
Confidence 346778888777665 47789999999999997521 2233 23567788888866654 1111111112233
Q ss_pred EEecCCCCHHHHHH----H------------HHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccc
Q 001155 461 TFLSGNMEWTEQQE----I------------LRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAH 524 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~----~------------l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH 524 (1136)
....|......-.. . .+.-......++++..+++.......+.... ..+++|+||+|
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v-------~w~~livde~~ 446 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSV-------QWGLLIVDEAH 446 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhh-------hcceeEeechh
Confidence 33333321100000 0 0000001136778888888875433332222 26889999999
Q ss_pred cccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcce
Q 001155 525 CVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNC 576 (1136)
Q Consensus 525 ~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~ 576 (1136)
++.. ++... -.....++.-..++||.|+.....+.+...|++..+
T Consensus 447 rlkn----~~s~~---f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~ 491 (696)
T KOG0383|consen 447 RLKN----KQSKR---FRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTP 491 (696)
T ss_pred hccc----chhhh---hhhccccccchhhhccCCcchhhhHHhhhcccccCc
Confidence 9853 22221 122334444556778888877777666666654443
No 214
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.61 E-value=0.096 Score=67.08 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=45.2
Q ss_pred HhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--HhhhhhC-C--CcEEEEccChhhHH
Q 001155 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALIC-P--GITLVISPLVSLIQ 447 (1136)
Q Consensus 387 ~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~~-~--g~~LVIsPtraL~~ 447 (1136)
+.+|+ .+++.|++|+..+..++-++|.++.|+|||.+. ++-++.. + ..+++++||-.-+.
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 33454 689999999999998888999999999999753 3333433 3 45777899976654
No 215
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.51 E-value=0.59 Score=51.67 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.5
Q ss_pred CCcEEEEccCCChHHHH
Q 001155 408 GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~ 424 (1136)
+..+++.+|+|+|||-.
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999964
No 216
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.38 E-value=0.24 Score=62.58 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=86.9
Q ss_pred cEEEEccCCChHHHHHHhhhhhC------------CCcEEEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQLPALIC------------PGITLVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQ 473 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~------------~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~ 473 (1136)
-.|+.---|-|||+..+.-++.. ...+|||+|+ +++.+|..++.+. .+.+.++.| .......
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g-r~kd~~e 231 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG-RTKDKSE 231 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc-cccccch
Confidence 36777788999998765555432 2347888887 7777899888333 344566666 2221111
Q ss_pred HHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEE
Q 001155 474 EILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVL 553 (1136)
Q Consensus 474 ~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv 553 (1136)
...++|+++||..|..+.. .. -..-+||+||||.+..+.. ......-.+.....-
T Consensus 232 ---------l~~~dVVltTy~il~~~~l-----~~----i~w~Riildea~~ikn~~t-------q~~~a~~~L~a~~RW 286 (674)
T KOG1001|consen 232 ---------LNSYDVVLTTYDILKNSPL-----VK----IKWLRIVLDEAHTIKNKDT-------QIFKAVCQLDAKYRW 286 (674)
T ss_pred ---------hcCCceEEeeHHHhhcccc-----cc----eeEEEEEeccccccCCcch-------Hhhhhheeeccceee
Confidence 1378899999999852111 11 1246799999999875431 111222233345567
Q ss_pred EEeeccchhhHHHHHHHhcC
Q 001155 554 ALTATATASVKEDVVQALGL 573 (1136)
Q Consensus 554 ~LSAT~~~~v~~dI~~~L~l 573 (1136)
.||+|+......++...++.
T Consensus 287 cLtgtPiqn~~~~lysl~~f 306 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKF 306 (674)
T ss_pred eecCChhhhhHHHHHHHHHH
Confidence 89999999988888776654
No 217
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.36 E-value=0.29 Score=61.25 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHCCCcEEEEccCCChHHHH--HHhhhhhC------CCcEEEEccChhhHHHHHHHH
Q 001155 395 RPNQREIINATMSGHDVFVLMPTGGGKSLT--YQLPALIC------PGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 395 rpiQ~eaI~~il~g~dvLV~APTGsGKTl~--y~LpaL~~------~g~~LVIsPtraL~~dqv~~L 453 (1136)
..+|+.|+..++.++-++|.++.|+|||.+ .++..+.. ..++++.+||---+....+.+
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 379999999999999999999999999975 33433322 146889999976655444333
No 218
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.31 E-value=0.22 Score=53.58 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHCCC--cEEEEccCCChHHHHHHh--hhh-hCCCcEEEEccChhhHHH
Q 001155 393 SFRPNQREIINATMSGH--DVFVLMPTGGGKSLTYQL--PAL-ICPGITLVISPLVSLIQD 448 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~--dvLV~APTGsGKTl~y~L--paL-~~~g~~LVIsPtraL~~d 448 (1136)
+|++-|.+++..++.+. -.+|.+|.|+|||.+... -++ ..+..+++++||...+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHH
Confidence 47899999999998544 377789999999975321 122 236789999999877664
No 219
>PRK06893 DNA replication initiation factor; Validated
Probab=93.24 E-value=0.21 Score=55.03 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=29.2
Q ss_pred ccceeeeeccccccccCCCCc-cchhhhhhhhccCCCCCEEEEeeccchhhH----HHHHHHhc
Q 001155 514 LLARIVIDEAHCVSQWGHDFR-PDYQGLGILKQKFPNTPVLALTATATASVK----EDVVQALG 572 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR-~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~----~dI~~~L~ 572 (1136)
..++|||||+|.+..... +. .-+..+..+.. .+.+++++|++.++... .++...++
T Consensus 91 ~~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~sRl~ 151 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-WELAIFDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLASRLT 151 (229)
T ss_pred cCCEEEEeChhhhcCChH-HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHHHHh
Confidence 368999999998742110 01 11111211111 13456788888766543 35555544
No 220
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.96 E-value=0.65 Score=52.07 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=57.0
Q ss_pred HHCCCcEEEEccCCChHHHHH-Hhhhh--hC-CCcEEEEccChhhHHHHHHHHHHc--CCCeEEec--CCCCHHHHHHHH
Q 001155 405 TMSGHDVFVLMPTGGGKSLTY-QLPAL--IC-PGITLVISPLVSLIQDQIMHLLQA--NIPATFLS--GNMEWTEQQEIL 476 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~y-~LpaL--~~-~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~--g~~~~~~~~~~l 476 (1136)
+..|.-+++.|++|+|||... ++..- .. +..++|++- -.-..+....+... ++++.... ......+....+
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 445777999999999999643 33222 23 557777763 22233344444332 44332211 111222222222
Q ss_pred HHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 477 RELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
..+.. .+.. +++-.+... ..+.+...+..+.....+++||||.++.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~-~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEY-SMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCcc-CHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 22211 1122 223222221 1133334444333334589999999998853
No 221
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.88 E-value=0.75 Score=54.39 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=64.8
Q ss_pred CCCcEEEEccCCChHHHHH-Hhhhhh----C-CCcEEEEcc-ChhhHHHHHHHHHHc-CCCeEEecCCCCHHHHHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY-QLPALI----C-PGITLVISP-LVSLIQDQIMHLLQA-NIPATFLSGNMEWTEQQEILRE 478 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y-~LpaL~----~-~g~~LVIsP-traL~~dqv~~L~~~-gI~v~~L~g~~~~~~~~~~l~~ 478 (1136)
.++.+.+++|||.|||.+- =|++.. . ...+||-.- .|.=+.+|...+... |+++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v---------------- 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV---------------- 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE----------------
Confidence 3788999999999999652 122221 1 223333332 233344555544432 444433
Q ss_pred HhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch--hhhhhhhccCC-CCCEEEE
Q 001155 479 LNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY--QGLGILKQKFP-NTPVLAL 555 (1136)
Q Consensus 479 l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y--~~L~~l~~~~p-~~~iv~L 555 (1136)
+-+|.-|. ..+. .....++|.||=+=+ .++... .+|..+...-. ..-.+.|
T Consensus 266 -----------v~~~~el~------~ai~---~l~~~d~ILVDTaGr------s~~D~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 266 -----------VYSPKELA------EAIE---ALRDCDVILVDTAGR------SQYDKEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred -----------ecCHHHHH------HHHH---HhhcCCEEEEeCCCC------CccCHHHHHHHHHHHhccccceEEEEE
Confidence 33444332 1111 122246677665532 233221 22333322222 2336889
Q ss_pred eeccchhhHHHHHHHhcCc
Q 001155 556 TATATASVKEDVVQALGLV 574 (1136)
Q Consensus 556 SAT~~~~v~~dI~~~L~l~ 574 (1136)
|||....+...|...+..-
T Consensus 320 sat~K~~dlkei~~~f~~~ 338 (407)
T COG1419 320 SATTKYEDLKEIIKQFSLF 338 (407)
T ss_pred ecCcchHHHHHHHHHhccC
Confidence 9999999988888877654
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.84 E-value=0.85 Score=54.98 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=31.3
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhc-c-CCCCCEEEEeeccchhhHHHHHHHhcC
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQ-K-FPNTPVLALTATATASVKEDVVQALGL 573 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~-~-~p~~~iv~LSAT~~~~v~~dI~~~L~l 573 (1136)
..++|+||.+-... .+ ......|..+.. . .+....+.++||........+...+..
T Consensus 299 ~~DlVlIDt~G~~~---~d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 299 DCDVILIDTAGRSQ---RD-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred CCCEEEEeCCCCCC---CC-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 36888888875421 00 111122333333 1 233447889999988777777666543
No 223
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.75 E-value=0.32 Score=55.50 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=14.8
Q ss_pred CcEEEEccCCChHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y 425 (1136)
.+++++++||-|||.+.
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 47999999999999753
No 224
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.65 E-value=0.6 Score=52.16 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhC-CCcEEEEccC---hhhHHHHHHHHHHcCCCeEEecCC-CCHHHHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LIC-PGITLVISPL---VSLIQDQIMHLLQANIPATFLSGN-MEWTEQQEILREL 479 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~-~g~~LVIsPt---raL~~dqv~~L~~~gI~v~~L~g~-~~~~~~~~~l~~l 479 (1136)
|.=++|.|+||.|||..++=-+ ... +..++|++.= ..++.-.+..+ .+++...+..+ ....+.... ...
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~~~~-~~~ 95 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL--SGVPYNKIRSGDLSDEEFERL-QAA 95 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHHHHH-HHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh--hcchhhhhhccccCHHHHHHH-HHH
Confidence 3448888999999997654222 233 4677887752 33333222222 25554444333 333322222 111
Q ss_pred hcccCcceEE-EeChhhhhchHHHHHHHHhhhhh-hccceeeeeccccccccCCCCccchhhh-------hhhhccCCCC
Q 001155 480 NSDYCKYKLL-YVTPEKVAKSDVLLRQLESLNAR-ELLARIVIDEAHCVSQWGHDFRPDYQGL-------GILKQKFPNT 550 (1136)
Q Consensus 480 ~~~~~~~~IL-V~TPEkL~~~d~l~r~l~~l~~~-~~l~lVVIDEAH~ls~wGhdfR~~y~~L-------~~l~~~~p~~ 550 (1136)
........+. ..+|. + +.+.+......+... ..+++||||=.|.|.... ...+.+..+ ..+...+ ++
T Consensus 96 ~~~l~~~~l~i~~~~~-~-~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~-~~~~~~~~~~~i~~~Lk~lA~~~-~i 171 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPS-L-TIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED-SSDNRRQEIGEISRELKALAKEL-NI 171 (259)
T ss_dssp HHHHHTSEEEEEESSS---BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC-SSSCCHHHHHHHHHHHHHHHHHH-TS
T ss_pred HHHHhhCcEEEECCCC-C-CHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHc-CC
Confidence 1111233344 34443 2 224445555544444 668999999999986543 122233332 2222222 56
Q ss_pred CEEEEeecc
Q 001155 551 PVLALTATA 559 (1136)
Q Consensus 551 ~iv~LSAT~ 559 (1136)
|++++|-.-
T Consensus 172 ~vi~~sQln 180 (259)
T PF03796_consen 172 PVIALSQLN 180 (259)
T ss_dssp EEEEEEEBS
T ss_pred eEEEccccC
Confidence 777666543
No 225
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.47 E-value=0.53 Score=52.50 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHH----CCC-cEEEEccCCChHHHHHHhh
Q 001155 394 FRPNQREIINATM----SGH-DVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 394 lrpiQ~eaI~~il----~g~-dvLV~APTGsGKTl~y~Lp 428 (1136)
..+.+.+++..+. .+. .+++.+|+|+|||.....-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 4555566666543 233 5889999999999876533
No 226
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.43 E-value=0.36 Score=50.61 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=31.9
Q ss_pred EEEEccCCChHHHHHH---hhhhhCCCcEEEEccChhhHHHHHHHHHHcCCC
Q 001155 411 VFVLMPTGGGKSLTYQ---LPALICPGITLVISPLVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~---LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~ 459 (1136)
++|.+|+|+|||...+ ...+..+..++|++.- +-..+....+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6899999999998543 3334456778888653 4455566666665554
No 227
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.25 E-value=0.12 Score=61.38 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=43.9
Q ss_pred cEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 410 DVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
+++++||||+|||.++.+|.+.. .+.+||+-|--++.......+...|-+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 47999999999999999998765 67788888999998766555566666666655
No 228
>PRK12377 putative replication protein; Provisional
Probab=92.23 E-value=0.7 Score=51.66 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=24.9
Q ss_pred CcEEEEccCCChHHHHHHh--hhhhCCCcEEEEccChhhHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQL--PALICPGITLVISPLVSLIQD 448 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L--paL~~~g~~LVIsPtraL~~d 448 (1136)
.++++.+|+|+|||-.+.. -.+...+..+++++..+|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 5799999999999954322 223334554555555555553
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.89 E-value=0.89 Score=45.72 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=23.4
Q ss_pred EEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhh
Q 001155 411 VFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSL 445 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL 445 (1136)
++|.+|+|+|||.....-+. ..++.++++..-..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 68999999999975432222 235677777765444
No 230
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=0.62 Score=56.58 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.0
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
+|+++|.|+|||.++.+-+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999998875544
No 231
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.60 E-value=0.16 Score=66.09 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=91.6
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhC---------------------CCcEEEEccChhhHHHHHHHHHHc---CCCeEEe
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALIC---------------------PGITLVISPLVSLIQDQIMHLLQA---NIPATFL 463 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~---------------------~g~~LVIsPtraL~~dqv~~L~~~---gI~v~~L 463 (1136)
|++++..-..|.|||.+-+...+.. .|.+|||+|.--| .||..+.... ++++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL-MQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH-HHHHHHHHHhccccceEEEE
Confidence 5677888889999998765444421 3569999998544 5688888664 5677666
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHH---Hhhhhh------------hccceeeeeccccccc
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQL---ESLNAR------------ELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l---~~l~~~------------~~l~lVVIDEAH~ls~ 528 (1136)
.|-........ .. ...++||++|...|...-...... ..+... -.+-.|++|||+++-.
T Consensus 453 ~Girk~~~~~~--~e----l~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP--FE----LLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhhcccCc--hh----hhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 55322111111 11 148999999999885311111000 000000 0134689999999732
Q ss_pred cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHh
Q 001155 529 WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQAL 571 (1136)
Q Consensus 529 wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L 571 (1136)
.-.....+...++.+...++|+|+-.. ..++.-.|
T Consensus 527 -------ssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 527 -------SSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred -------hHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
Confidence 223455677778888899999998887 45544433
No 232
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.59 E-value=0.17 Score=61.48 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=46.1
Q ss_pred CcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.+++++||||+|||..+.+|.++. .+-+||+-|--+|.......+.+.|-+|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 479999999999999999998866 56788888999998877777777776666655
No 233
>PRK06921 hypothetical protein; Provisional
Probab=91.57 E-value=1.3 Score=50.15 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChHHHH
Q 001155 408 GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~ 424 (1136)
+.++++.+|+|+|||..
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56799999999999954
No 234
>PF13173 AAA_14: AAA domain
Probab=91.33 E-value=0.65 Score=46.15 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=27.3
Q ss_pred cceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHH
Q 001155 515 LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 515 l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
-.+|+|||+|.+.+|. ..+..+....++.++ .+|++.......+...
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~i-i~tgS~~~~l~~~~~~ 108 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKI-ILTGSSSSLLSKDIAE 108 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceE-EEEccchHHHhhcccc
Confidence 5789999999997775 234444444444444 4555544443333333
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.21 E-value=1.2 Score=49.61 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=22.4
Q ss_pred CcEEEEccCCChHHHHHHh--hhhhCCCcEEEEccChhhH
Q 001155 409 HDVFVLMPTGGGKSLTYQL--PALICPGITLVISPLVSLI 446 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L--paL~~~g~~LVIsPtraL~ 446 (1136)
..+++.+++|+|||..+.. -.+...+..+++++...|+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 4699999999999964332 2223334444444444443
No 236
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.18 E-value=0.59 Score=45.62 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.0
Q ss_pred EEEEccCCChHHHHHHh
Q 001155 411 VFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~L 427 (1136)
+++.+|.|+|||.....
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999986543
No 237
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis]
Probab=90.87 E-value=0.8 Score=55.62 Aligned_cols=72 Identities=21% Similarity=0.267 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLE-INGIGKAKVSKYGVRLLETIESTIKE 1025 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~-I~Gig~~k~~kYG~~iL~~i~~~~~e 1025 (1136)
..++..|-+||..+|+. ++-.|+.|++|.+|..||+.+|.+...|.. ..++.+- +++--.+|+.+|++..+.
T Consensus 407 ~~~l~~L~~wRd~iARa--eDES~~yVlpN~~ll~l~e~~P~~v~gl~~~ln~~~p~-vkq~~~~~~~ii~~a~~~ 479 (687)
T KOG2206|consen 407 LDVLRALLRWRDFIARA--EDESVHYVLPNDQLLKLAEERPDTVDGLLGGLNRLSPL-VKQNVMDFLYIIRSAGRG 479 (687)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCceecccHHHHHHHHHCCccHHHHHHhccCCCHH-HHHHHHHHHHHHHHHhhh
Confidence 45899999999999999 899999999999999999999999999874 4556554 455555688888775443
No 238
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.80 E-value=1.5 Score=48.16 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=54.3
Q ss_pred CCCcEEEEccCCChHHHHHH-h--hhhhC-CCcEEEEcc---ChhhHHHHHHHHHHcCCCeEEec-CCCCHHHH---HHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-L--PALIC-PGITLVISP---LVSLIQDQIMHLLQANIPATFLS-GNMEWTEQ---QEI 475 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-L--paL~~-~g~~LVIsP---traL~~dqv~~L~~~gI~v~~L~-g~~~~~~~---~~~ 475 (1136)
.|.-++|.|++|+|||...+ + -+... +..++|++. ...++...... ..++....+. +....... ...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLAS--ESGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 46668999999999997532 2 22233 667888873 33444332221 1244332222 22222111 111
Q ss_pred HHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 476 LRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 476 l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
...+. ...+.+.....+. .+.+...+..+.....+++||||=.+.+.
T Consensus 90 ~~~~~----~~~~~i~~~~~~~-~~~l~~~i~~~~~~~~~~~vvID~l~~l~ 136 (242)
T cd00984 90 IGELK----ELPIYIDDSSSLT-VSDIRSRARRLKKEHGLGLIVIDYLQLMS 136 (242)
T ss_pred HHHHh----cCCEEEeCCCCCC-HHHHHHHHHHHHHhcCCCEEEEcCchhcC
Confidence 11211 2233332211111 13333444433333368999999988774
No 239
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.78 E-value=1.2 Score=57.37 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHHhcchhhh
Q 001155 847 HLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 847 ~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
.++. .+..++..|..-|+|-.+
T Consensus 1065 plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1065 SNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CcHH-HHHHHHHHHHhcCeEEec
Confidence 3445 777888999999988653
No 240
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.77 E-value=1.7 Score=51.44 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHhcchhh
Q 001155 847 HLAKSEASRILRHLVIEDFLME 868 (1136)
Q Consensus 847 ~~s~~~~~~li~~l~~~g~L~e 868 (1136)
.++..++..++..|...|++..
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEE
Confidence 4567788889999999998874
No 241
>PRK10867 signal recognition particle protein; Provisional
Probab=90.75 E-value=2.4 Score=51.17 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=33.8
Q ss_pred cEEEEccCCChHHHHHH-hhh-hh-C-CCcEEEEc--cChhhHHHHHHHHHHc-CCCeEEe
Q 001155 410 DVFVLMPTGGGKSLTYQ-LPA-LI-C-PGITLVIS--PLVSLIQDQIMHLLQA-NIPATFL 463 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-Lpa-L~-~-~g~~LVIs--PtraL~~dqv~~L~~~-gI~v~~L 463 (1136)
-+++++++|+|||.+.. |.. +. . +.++++|. +.++-+.+|...+... |+++...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEec
Confidence 47889999999997543 332 22 2 34455555 5666677777766543 6665543
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.61 E-value=0.84 Score=55.35 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=13.3
Q ss_pred cEEEEccCCChHHHH
Q 001155 410 DVFVLMPTGGGKSLT 424 (1136)
Q Consensus 410 dvLV~APTGsGKTl~ 424 (1136)
.+++.+|+|+|||-.
T Consensus 143 pl~L~G~~G~GKTHL 157 (445)
T PRK12422 143 PIYLFGPEGSGKTHL 157 (445)
T ss_pred eEEEEcCCCCCHHHH
Confidence 489999999999964
No 243
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.42 E-value=1.5 Score=51.91 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|..+++++|||+|||....
T Consensus 136 ~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999997643
No 244
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.41 E-value=2.5 Score=50.94 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=35.1
Q ss_pred cEEEEccCCChHHHHH-Hhhhhh-C-CCcEEEEc--cChhhHHHHHHHHHHc-CCCeEEecC
Q 001155 410 DVFVLMPTGGGKSLTY-QLPALI-C-PGITLVIS--PLVSLIQDQIMHLLQA-NIPATFLSG 465 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y-~LpaL~-~-~g~~LVIs--PtraL~~dqv~~L~~~-gI~v~~L~g 465 (1136)
-+++++++|+|||.+. -|...+ . +.++++|+ |.+.-+.+|...+... ++++.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~ 163 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYT 163 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecC
Confidence 4789999999998653 343332 2 33555554 4576777787766654 666654443
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.37 E-value=1 Score=49.26 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=12.3
Q ss_pred EEEEccCCChHHH
Q 001155 411 VFVLMPTGGGKSL 423 (1136)
Q Consensus 411 vLV~APTGsGKTl 423 (1136)
+++.+|+|+|||-
T Consensus 37 l~l~G~~G~GKTH 49 (219)
T PF00308_consen 37 LFLYGPSGLGKTH 49 (219)
T ss_dssp EEEEESTTSSHHH
T ss_pred eEEECCCCCCHHH
Confidence 8999999999996
No 246
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.37 E-value=2.1 Score=50.68 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.++-+++++|||+|||...
T Consensus 205 ~~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667899999999999653
No 247
>PRK05973 replicative DNA helicase; Provisional
Probab=90.32 E-value=1.8 Score=48.21 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=46.8
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHH---------HHHHHHCCCcEEEEccCCChHHHHHH---hhhhhCCCcEEEEcc
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQRE---------IINATMSGHDVFVLMPTGGGKSLTYQ---LPALICPGITLVISP 441 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~e---------aI~~il~g~dvLV~APTGsGKTl~y~---LpaL~~~g~~LVIsP 441 (1136)
..|+++.+.+...+. ||....-.... +...+..|.-++|.|++|+|||...+ .-+...+..++|++-
T Consensus 22 ~~~~~~~~~~~a~~~-g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 22 NIPLHEALDRIAAEE-GFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCcHHHHHHHHHHHh-ccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 345555555555554 65443322222 22233345568999999999997543 223344566777763
Q ss_pred ChhhHHHHHHHHHHcCCC
Q 001155 442 LVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 442 traL~~dqv~~L~~~gI~ 459 (1136)
--. ..+..+++...|+.
T Consensus 101 Ees-~~~i~~R~~s~g~d 117 (237)
T PRK05973 101 EYT-EQDVRDRLRALGAD 117 (237)
T ss_pred eCC-HHHHHHHHHHcCCC
Confidence 322 35566666666543
No 248
>PLN03025 replication factor C subunit; Provisional
Probab=90.28 E-value=1.6 Score=50.51 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=28.6
Q ss_pred cceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHH
Q 001155 515 LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 515 l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
.++|||||||.+.... ...|..+...++..-.+.|+++....+...+..
T Consensus 100 ~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 100 HKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred eEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 6889999999985322 223344445555544556666655554444444
No 249
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=90.15 E-value=0.25 Score=36.99 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=18.6
Q ss_pred hcCCCCHHHHccCCCCCHHHHH
Q 001155 988 KRVPRTEEELLEINGIGKAKVS 1009 (1136)
Q Consensus 988 ~~~P~t~~eL~~I~Gig~~k~~ 1009 (1136)
...|.|.+||.+|||||+..++
T Consensus 4 g~~pas~eeL~~lpGIG~~tA~ 25 (30)
T PF00633_consen 4 GLIPASIEELMKLPGIGPKTAN 25 (30)
T ss_dssp HHHTSSHHHHHTSTT-SHHHHH
T ss_pred CcCCCCHHHHHhCCCcCHHHHH
Confidence 3579999999999999999876
No 250
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.14 E-value=1.3 Score=56.31 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=26.4
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhH
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVK 564 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~ 564 (1136)
..+++||||+|.|..-. +..|.......+..-+++|+.|-...+.
T Consensus 119 r~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred CceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 46899999999986421 2334344444454445556666554443
No 251
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.13 E-value=1.1 Score=56.04 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=29.4
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHH
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
+..+++||||+|.|+.-. +..|.......|..-+++|..|-+..+..-|..
T Consensus 123 gr~KViIIDEah~Ls~~A------aNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHA------FNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred CCceEEEEEChHhcCHHH------HHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 457899999999996422 233333444444444555666655555444443
No 252
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.10 E-value=1.2 Score=51.97 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHCC-C---cEEEEccCCChHHHHHH
Q 001155 394 FRPNQREIINATMSG-H---DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g-~---dvLV~APTGsGKTl~y~ 426 (1136)
+.|||...+..++.. + -.|+.+|.|.|||..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 468888888887743 2 38899999999997653
No 253
>PRK08116 hypothetical protein; Validated
Probab=90.08 E-value=2.8 Score=47.47 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.3
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+++.+++|+|||..+.
T Consensus 116 gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA 132 (268)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997543
No 254
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.88 E-value=2 Score=54.01 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.2
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
-+|+++|.|.|||.++.+-+
T Consensus 39 AyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999998875444
No 255
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=89.70 E-value=0.9 Score=58.59 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHCC-CcEEEEccCCChHHHHHH--hhhhh-CCCcEEEEccChhhH
Q 001155 392 HSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTYQ--LPALI-CPGITLVISPLVSLI 446 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g-~dvLV~APTGsGKTl~y~--LpaL~-~~g~~LVIsPtraL~ 446 (1136)
..|++-|.+|+..++.+ +-++|.++.|+|||.+.- +-++. .+..+++++||---+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 35899999999999874 558999999999996532 22222 356788888985443
No 256
>PRK10536 hypothetical protein; Provisional
Probab=89.69 E-value=0.67 Score=51.93 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CC--CcEEEEccChhh
Q 001155 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CP--GITLVISPLVSL 445 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~--g~~LVIsPtraL 445 (1136)
++...+..|...+.++..+..+++.+|+|+|||+.+...++. .+ .+++|.-|..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 667788999999999988888999999999999876655442 22 235555576654
No 257
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=89.61 E-value=3.4 Score=52.21 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=37.8
Q ss_pred EEEcCCCCHHHHHHHHHHHhc----CCceEEEeeccccccccC----------CCccEEEEcCCCC
Q 001155 626 AFYHGSIDPAQRAFVQKQWSK----DEINIICATVAFGMGINK----------PDVRFVIHHSLPK 677 (1136)
Q Consensus 626 ~~~Hagm~~~dR~~i~~~F~~----g~i~VLVAT~alg~GIDl----------P~V~~VIh~d~P~ 677 (1136)
.++.|..+ .|...+++|+. |.-.||++|..|..|||+ ..+..||...+|-
T Consensus 498 ~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 498 IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 34455432 45668888887 478999999999999999 3588898877773
No 258
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.53 E-value=1.2 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHHHHhcchhhh
Q 001155 846 KHLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 846 k~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
+.++..++..++..|...|++.-.
T Consensus 327 ~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 327 DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 457788999999999999988754
No 259
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.49 E-value=0.59 Score=53.13 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHHHH---CC---CcEEEEccCCChHHHHHHhhhhh
Q 001155 397 NQREIINATM---SG---HDVFVLMPTGGGKSLTYQLPALI 431 (1136)
Q Consensus 397 iQ~eaI~~il---~g---~dvLV~APTGsGKTl~y~LpaL~ 431 (1136)
.|..++..+. .+ -++|..+|.|+|||-++++.+-.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 4666655543 22 35999999999999987765543
No 260
>PRK05642 DNA replication initiation factor; Validated
Probab=89.43 E-value=1.2 Score=49.30 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.6
Q ss_pred CcEEEEccCCChHHHH
Q 001155 409 HDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~ 424 (1136)
..+++++|+|+|||--
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588999999999953
No 261
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.39 E-value=1.6 Score=52.49 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=57.7
Q ss_pred CCCcEEEEccCCChHHHHHHhhh----hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHH---HH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA----LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQE---IL 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa----L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~---~l 476 (1136)
.|.=++|.|++|+|||...+--+ +..+..++|++ +-.-..+.+.++... +++...+ .|..+..+... ..
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-lEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-LEMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35568889999999997654332 12355677776 212233344444332 5544333 33333322221 22
Q ss_pred HHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhh-ccceeeeecccccc
Q 001155 477 RELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARE-LLARIVIDEAHCVS 527 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~-~l~lVVIDEAH~ls 527 (1136)
..+. ...+.|.-...+. .+.+......+.... .+++||||=.|.+.
T Consensus 272 ~~l~----~~~l~i~d~~~~t-~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 272 DRLS----EKDLYIDDTGGLT-VAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHh----cCCEEEECCCCCC-HHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 2222 3344444332221 133344444333222 58999999988875
No 262
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.30 E-value=1.3 Score=57.22 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=15.5
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
.|+++|.|+|||.++.+-+
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998765444
No 263
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.29 E-value=4.3 Score=46.04 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=31.6
Q ss_pred cEEEEccCCChHHHHHH-hhh-hhC-CCcEEEEc--cChhhHHHHHHHHHHc-CCCeE
Q 001155 410 DVFVLMPTGGGKSLTYQ-LPA-LIC-PGITLVIS--PLVSLIQDQIMHLLQA-NIPAT 461 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-Lpa-L~~-~g~~LVIs--PtraL~~dqv~~L~~~-gI~v~ 461 (1136)
-+++++|+|+|||.+.. |.. +.. +.++++|. +.+.-..+|...|... ++++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~ 131 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI 131 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE
Confidence 47788999999997543 322 222 34555555 4555566777766543 65543
No 264
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=89.13 E-value=1.3 Score=48.98 Aligned_cols=51 Identities=18% Similarity=0.061 Sum_probs=35.1
Q ss_pred CCcEEEEccCCChHHHHHH---hhhhhCCCcEEEEccChhhHHHHHHHHHHcCCC
Q 001155 408 GHDVFVLMPTGGGKSLTYQ---LPALICPGITLVISPLVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~---LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~ 459 (1136)
|..++|.+|+|+|||..++ ...+..+..++||+ +-+-..+.++.+..+|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 5679999999999998543 33345577888888 444555666666666543
No 265
>PRK04195 replication factor C large subunit; Provisional
Probab=89.04 E-value=1.4 Score=54.13 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=16.4
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.+|+.+|+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35699999999999976543
No 266
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.85 E-value=0.38 Score=60.23 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=47.2
Q ss_pred CcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.+++++||||+|||..+.+|.++. ++-+||+=|--++.......+++.|-+|.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 479999999999999999999876 67788888999999877777777787777665
No 267
>PRK04296 thymidine kinase; Provisional
Probab=88.69 E-value=0.54 Score=50.29 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=21.4
Q ss_pred CcEEEEccCCChHHHHHHhhhh---hCCCcEEEEcc
Q 001155 409 HDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISP 441 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsP 441 (1136)
.=.++.+|+|+|||...+--+. ..+.+++|+-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3468899999999976432222 23556666655
No 268
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.56 E-value=1.7 Score=53.24 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=16.8
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
..|+++|.|.|||.++.+-+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 37 SILLVGASGVGKTTCARIIS 56 (491)
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 59999999999998776554
No 269
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.38 E-value=5.5 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.+..+++++|+|+|||..+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 446799999999999987653
No 270
>PRK05595 replicative DNA helicase; Provisional
Probab=88.31 E-value=1.9 Score=52.24 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCcEEEEccCCChHHHHHHhhh----hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEec-CCCCHHHHHHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA----LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFLS-GNMEWTEQQEILRELN 480 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa----L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~-g~~~~~~~~~~l~~l~ 480 (1136)
|.=++|.|.||.|||..++--+ ...+..++|++.= .=..+.+.++... +++...+. |..+..+.........
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~ 279 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASG 279 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4447788999999997654222 2235566676542 1233344444332 55544332 3333222222211110
Q ss_pred cccCcceEEEe-ChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 481 SDYCKYKLLYV-TPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 481 ~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
......+.|- +|+ +. .+.+......+.....+++||||=.|.|..
T Consensus 280 -~l~~~~l~i~d~~~-~t-~~~i~~~~r~~~~~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 280 -PLAAAKIFIDDTAG-VS-VMEMRSKCRRLKIEHGIDMILIDYLQLMSG 325 (444)
T ss_pred -HHhcCCEEEECCCC-CC-HHHHHHHHHHHHHhcCCCEEEEeHHHhccC
Confidence 0112334443 333 21 133444444444444589999999999863
No 271
>PRK05748 replicative DNA helicase; Provisional
Probab=88.18 E-value=3.1 Score=50.55 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=56.1
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---hhC-CCcEEEEccChhhHHHHHHHHHH-c-CCCeEEe-cCCCCHHHHHH---HH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---LIC-PGITLVISPLVSLIQDQIMHLLQ-A-NIPATFL-SGNMEWTEQQE---IL 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L~~-~g~~LVIsPtraL~~dqv~~L~~-~-gI~v~~L-~g~~~~~~~~~---~l 476 (1136)
.|.=++|.|+||.|||.-.+--+ ... +..++|++ +-.-..+.+.++.. . ++....+ .|.....+... ..
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 35558889999999997544222 222 44555554 22223344445432 2 3443322 33333332221 22
Q ss_pred HHHhcccCcceEEEe-ChhhhhchHHHHHHHHhhhhhh-ccceeeeecccccc
Q 001155 477 RELNSDYCKYKLLYV-TPEKVAKSDVLLRQLESLNARE-LLARIVIDEAHCVS 527 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~~-~l~lVVIDEAH~ls 527 (1136)
..+. ...+.|. +|. +. .+.+......+.... .+++||||=.|.|.
T Consensus 281 ~~l~----~~~~~i~d~~~-~t-i~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 281 GSLS----DAPIYIDDTPG-IK-VTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHh----cCCEEEECCCC-CC-HHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2222 3334443 443 21 133334443333332 58999999999884
No 272
>PRK08760 replicative DNA helicase; Provisional
Probab=88.16 E-value=1.9 Score=52.86 Aligned_cols=115 Identities=22% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hC-CCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHH---HHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---IC-PGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQE---ILR 477 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~-~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~---~l~ 477 (1136)
|.=++|.|.+|.|||...+--+. .. +..++|++.= .=..+.+.++... ++....+ .|..+..+... ...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~ 307 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIK 307 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHH
Confidence 44478889999999976542221 22 4456666532 2233455555443 3443322 23333322221 222
Q ss_pred HHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 478 ELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 478 ~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
.+. ...+.|.-...+. .+.+......+.....+++||||=.+.|..
T Consensus 308 ~l~----~~~l~I~d~~~~t-~~~I~~~~r~l~~~~~~~lVvIDyLql~~~ 353 (476)
T PRK08760 308 MLK----ETKIFIDDTPGVS-PEVLRSKCRRLKREHDLGLIVIDYLQLMSV 353 (476)
T ss_pred HHh----cCCEEEeCCCCCC-HHHHHHHHHHHHHhcCCCEEEEecHHhcCC
Confidence 222 3445444322221 133334444444344589999999998853
No 273
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.09 E-value=0.68 Score=56.38 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=40.4
Q ss_pred CcceEEEeChhhhhchHHHHHHHHh--hhhhhccce-eeeeccccccccC----CCCccch----hhhhhhhccCCCCCE
Q 001155 484 CKYKLLYVTPEKVAKSDVLLRQLES--LNARELLAR-IVIDEAHCVSQWG----HDFRPDY----QGLGILKQKFPNTPV 552 (1136)
Q Consensus 484 ~~~~ILV~TPEkL~~~d~l~r~l~~--l~~~~~l~l-VVIDEAH~ls~wG----hdfR~~y----~~L~~l~~~~p~~~i 552 (1136)
..+.|.++|-..|.. ++...+-.. +.......+ ++-||||+|.... .|-.... ..+..-....++.-+
T Consensus 80 d~iei~fttiq~l~~-d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFS-DFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHH-HHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 478899999999862 333322111 112222344 4569999995311 0100000 111222233455667
Q ss_pred EEEeeccchh
Q 001155 553 LALTATATAS 562 (1136)
Q Consensus 553 v~LSAT~~~~ 562 (1136)
+.+|||.+..
T Consensus 159 lef~at~~k~ 168 (812)
T COG3421 159 LEFSATIPKE 168 (812)
T ss_pred ehhhhcCCcc
Confidence 8899998854
No 274
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.06 E-value=5.4 Score=48.19 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=35.0
Q ss_pred cEEEEccCCChHHHHHH-hhhh-h--CCCcEEEEc--cChhhHHHHHHHHHH-cCCCeEEec
Q 001155 410 DVFVLMPTGGGKSLTYQ-LPAL-I--CPGITLVIS--PLVSLIQDQIMHLLQ-ANIPATFLS 464 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-LpaL-~--~~g~~LVIs--PtraL~~dqv~~L~~-~gI~v~~L~ 464 (1136)
-+++++++|+|||.+.. |... . .+.++++|. +.|.-+.+|...+.. .++++....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecC
Confidence 48899999999997643 3322 2 244555554 456667777777654 477765543
No 275
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.01 E-value=1.3 Score=53.69 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.8
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+++.+|+|+|||...
T Consensus 150 ~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 150 PLFIYGGVGLGKTHLL 165 (450)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999653
No 276
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.01 E-value=3.6 Score=49.35 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=26.2
Q ss_pred CcEEEEccCCChHHHHHH-hhhh--hC-CCcEEEEc--cChhhHHHHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ-LPAL--IC-PGITLVIS--PLVSLIQDQIMHLL 454 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~-LpaL--~~-~g~~LVIs--PtraL~~dqv~~L~ 454 (1136)
.-+++++|||+|||.... |... .. +.++.++. +.++.+.+|...+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yA 275 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYA 275 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHH
Confidence 347899999999997643 3321 12 33333333 44555555555553
No 277
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.99 E-value=1.2 Score=48.69 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=14.5
Q ss_pred CCcEEEEccCCChHHHH
Q 001155 408 GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~ 424 (1136)
++.+++++|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45699999999999954
No 278
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=3.1 Score=49.21 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 500 DVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 500 d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
+.+...+..+......-+||+||++.|..
T Consensus 109 ~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 109 EILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred HHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 33444444444445567899999999965
No 279
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.89 E-value=2.3 Score=51.64 Aligned_cols=50 Identities=24% Similarity=0.175 Sum_probs=29.2
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhh--hCCCcEEEEccChhhHHHHHHHHHHcCC
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPAL--ICPGITLVISPLVSLIQDQIMHLLQANI 458 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL--~~~g~~LVIsPtraL~~dqv~~L~~~gI 458 (1136)
|.-+++.+++|+|||... ++... ..+.+++||+---+ ..+......++|+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~ 132 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGL 132 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCC
Confidence 456899999999999743 33222 23567888875433 2333333444443
No 280
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=87.85 E-value=1.3 Score=58.32 Aligned_cols=54 Identities=17% Similarity=0.003 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHCCCc-EEEEccCCChHHHHHH--hhhhh-CCCcEEEEccChhhH
Q 001155 393 SFRPNQREIINATMSGHD-VFVLMPTGGGKSLTYQ--LPALI-CPGITLVISPLVSLI 446 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~d-vLV~APTGsGKTl~y~--LpaL~-~~g~~LVIsPtraL~ 446 (1136)
.|++-|.+|+..++.+++ ++|.++.|+|||.+-- .-++. .+..++.++||-.-+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 599999999999998665 7899999999997521 11122 256788888985443
No 281
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.80 E-value=5.8 Score=46.09 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc--cChhhHHHHHHHHHH-cCCCeEE
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS--PLVSLIQDQIMHLLQ-ANIPATF 462 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs--PtraL~~dqv~~L~~-~gI~v~~ 462 (1136)
++-+++++|+|+|||... -|.... .++.++++. +.++-+.+|...+.. .++++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~ 174 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA 174 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEE
Confidence 445888999999999653 233322 244555554 345555566655544 3555443
No 282
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.76 E-value=0.56 Score=59.41 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.++++++||||+|||..+.+|-++. .+-+||+=|--++.........+.|-.|.++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~Fn 196 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFA 196 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEec
Confidence 3589999999999999999998876 67788888999998765555555676666554
No 283
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=87.68 E-value=1.9 Score=48.35 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=16.3
Q ss_pred CcEEEEccCCChHHHHHHhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lp 428 (1136)
.++++.+|+|+|||.++.+-
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 46899999999999876443
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.67 E-value=2.2 Score=49.23 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.5
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
.+++.+|+|+|||..+..
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999987543
No 285
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.63 E-value=1.6 Score=53.30 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.2
Q ss_pred EEEEccCCChHHHHHHhh
Q 001155 411 VFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lp 428 (1136)
+|+.+|.|+|||..+.+-
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999876544
No 286
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.60 E-value=1.4 Score=48.07 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCcEEEEccCCChHHHHH---HhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhccc
Q 001155 408 GHDVFVLMPTGGGKSLTY---QLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDY 483 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y---~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~ 483 (1136)
|.-++|.+|+|+|||.-. +...+.. +..++||+- .+-..+.++.+..+|+... . ... .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~---------~---~~~-----~ 80 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE---------E---YED-----S 80 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH---------H---HHH-----T
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH---------H---Hhh-----c
Confidence 567999999999999653 3344556 778888884 3444566677776655321 1 011 1
Q ss_pred CcceEEEeChhhhh----chHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 484 CKYKLLYVTPEKVA----KSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 484 ~~~~ILV~TPEkL~----~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
+...++=+.++... ..+.+...+.........++||||-..-+
T Consensus 81 g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 81 GKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp TSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred CCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 33444444444320 11233333333323333589999998887
No 287
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.21 E-value=1.4 Score=51.16 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHH-CCCcEEEEccCCChHHHH--HHhhhhh---CCCcEEEEccChhh
Q 001155 393 SFRPNQREIINATM-SGHDVFVLMPTGGGKSLT--YQLPALI---CPGITLVISPLVSL 445 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~--y~LpaL~---~~g~~LVIsPtraL 445 (1136)
.+.+.|.+.+..+. .+.+++|+++||||||.. +++..+. ...++++|=...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 47788888887766 577999999999999965 2333331 23456666666665
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.20 E-value=4.3 Score=50.03 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|+.+.+++|||+|||...
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999764
No 289
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.92 E-value=2.3 Score=48.46 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.++.+++++|||+|||...
T Consensus 193 ~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567889999999999653
No 290
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=86.67 E-value=2 Score=55.87 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=25.6
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccch
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATA 561 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~ 561 (1136)
...+++||||+|.|..-+ ...|..+....+..-+++|..|-..
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChh
Confidence 346899999999996532 3344455555554444444444443
No 291
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.63 E-value=8.3 Score=40.10 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=23.6
Q ss_pred EEEEccCCChHHHHHHhhh--hh-CCCcEEEEc--cChhhHHHHHHH
Q 001155 411 VFVLMPTGGGKSLTYQLPA--LI-CPGITLVIS--PLVSLIQDQIMH 452 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa--L~-~~g~~LVIs--PtraL~~dqv~~ 452 (1136)
+++.+++|+|||.....-+ +. .+.++++|. +.+.-..++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~ 49 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV 49 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH
Confidence 5788999999998754322 22 234454444 344333344444
No 292
>PRK09165 replicative DNA helicase; Provisional
Probab=86.42 E-value=2.8 Score=51.67 Aligned_cols=118 Identities=13% Similarity=0.120 Sum_probs=57.9
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hC---------------CCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---IC---------------PGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGN 466 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~---------------~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~ 466 (1136)
|.=++|.|+||.|||..++--+. .. +..++|++. -.=..+.+.++... +++...+ .|.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~i~~~~ 295 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSKIRRGK 295 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 44588899999999975432221 11 345666643 22234455555443 5554333 334
Q ss_pred CCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 467 MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 467 ~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
.+..+......... ......+.|-....+. .+.+......+.....+++||||=.|.|..
T Consensus 296 l~~~e~~~l~~a~~-~l~~~~l~I~d~~~~t-i~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 296 ISEEDFEKLVDASQ-ELQKLPLYIDDTPALS-ISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCHHHHHHHHHHHH-HHhcCCeEEeCCCCCC-HHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 44333222222111 0123345544322221 133333344343344589999999998854
No 293
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=86.41 E-value=2.2 Score=56.73 Aligned_cols=67 Identities=15% Similarity=0.024 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHh--hhhh-CCCcEEEEccChhhHHHHHHHHHH-cCCCeEE
Q 001155 392 HSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQL--PALI-CPGITLVISPLVSLIQDQIMHLLQ-ANIPATF 462 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~L--paL~-~~g~~LVIsPtraL~~dqv~~L~~-~gI~v~~ 462 (1136)
..|++-|.+++..+.. ++-++|.++-|+|||.+.-. -++. .+..++.++|+-.-+ ..|.+ .|+.+..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA----~~L~e~~Gi~a~T 451 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEAGIQSRT 451 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHH----HHHHHhhCCCeee
Confidence 4699999999998864 45589999999999976322 2222 356778888885443 33433 3555443
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.03 E-value=1.4 Score=52.65 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.7
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+++.+|+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4899999999999753
No 295
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=86.01 E-value=3.4 Score=52.26 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=25.6
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
+..+++||||||+|+.- ....|.......|..-+++|..|-+..+
T Consensus 118 g~~KV~IIDEah~Ls~~------a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH------SFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred CCCEEEEEechHhCCHH------HHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 45789999999998642 2233444444544433444445544443
No 296
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=85.97 E-value=4.7 Score=51.22 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=16.3
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+|+++|.|+|||.++.+-+
T Consensus 40 a~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47999999999998765443
No 297
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.84 E-value=3.9 Score=50.06 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCcEEEEccCCChHHHHHH-hhhhh---CCC-cEEEEc--cChhhHHHHHHHHHHc-CCCeEE
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPALI---CPG-ITLVIS--PLVSLIQDQIMHLLQA-NIPATF 462 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL~---~~g-~~LVIs--PtraL~~dqv~~L~~~-gI~v~~ 462 (1136)
|+-+++++|||+|||.+.. |.... .+. ++.+|. +.+.=+.+|+..|.+. |+++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA 318 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec
Confidence 5568899999999997643 33322 222 333322 3344455677766543 665543
No 298
>PRK10689 transcription-repair coupling factor; Provisional
Probab=85.77 E-value=3 Score=56.23 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=66.4
Q ss_pred hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH
Q 001155 430 LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507 (1136)
Q Consensus 430 L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~ 507 (1136)
+..+++++|++|++.-+......|.+. ++++..++|+++..++..++..+.. +..+|||+|-- + .+.+.
T Consensus 806 l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLVaTdI-i------erGID 876 (1147)
T PRK10689 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTI-I------ETGID 876 (1147)
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEECch-h------hcccc
Confidence 345789999999999988888888887 7899999999999988888888776 78999999942 2 22222
Q ss_pred hhhhhhccceeeeecccc
Q 001155 508 SLNARELLARIVIDEAHC 525 (1136)
Q Consensus 508 ~l~~~~~l~lVVIDEAH~ 525 (1136)
...+++||++.+++
T Consensus 877 ----IP~v~~VIi~~ad~ 890 (1147)
T PRK10689 877 ----IPTANTIIIERADH 890 (1147)
T ss_pred ----cccCCEEEEecCCC
Confidence 23489999998886
No 299
>PRK05636 replicative DNA helicase; Provisional
Probab=85.71 E-value=3.2 Score=51.18 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCcEEEEccCCChHHHHHHhhh----hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA----LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQEILRELN 480 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa----L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~~l~~l~ 480 (1136)
|.=++|.|.||.|||.-++--+ +..+..++|++. -.-..+.+.++... +++...+ .|..+..+.......+.
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl-EMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~ 343 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL-EMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLG 343 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe-eCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 4346888999999997544222 122445556532 11122333343332 4443323 33444333322221111
Q ss_pred cccCcceEEE-eChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 481 SDYCKYKLLY-VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 481 ~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
. .....+.| -+|..=. +.+..+...+.....+++||||=.|.|.
T Consensus 344 ~-l~~~~l~I~d~~~~ti--~~I~~~~r~~~~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 344 K-IAQAPIFIDDSANLTM--MEIRSKARRLKQKHDLKLIVVDYLQLMS 388 (505)
T ss_pred H-HhcCCEEEECCCCCCH--HHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 0 11333444 3443211 3344444444444458999999999985
No 300
>PHA02533 17 large terminase protein; Provisional
Probab=85.70 E-value=5.6 Score=49.45 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh-----hCCCcEEEEccChhhHHHHHHHHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL-----ICPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL-----~~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.|+|+|..++..+..++-.++..+=..|||.+....++ ..+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 48899999998877666678888999999986543222 2245788999999888877766653
No 301
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.69 E-value=4.7 Score=50.70 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=16.3
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+|+.+|.|+|||.++.+-+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998875544
No 302
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=85.56 E-value=4.7 Score=46.82 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHH----CCC---cEEEEccCCChHHHHHH
Q 001155 392 HSFRPNQREIINATM----SGH---DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~---dvLV~APTGsGKTl~y~ 426 (1136)
+.++|+|..++..+. .|+ -.|+.+|.|.||+..+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 567888888887765 333 38999999999997653
No 303
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.51 E-value=6 Score=47.63 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCcEEEEccCCChHHHHHH-hhhh---hC--CCcEEEEccChh-hHHHHHHHHHHc-CCCeEE
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPAL---IC--PGITLVISPLVS-LIQDQIMHLLQA-NIPATF 462 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-LpaL---~~--~g~~LVIsPtra-L~~dqv~~L~~~-gI~v~~ 462 (1136)
.|+-+.+++|||+|||.... |... .. ....++...+.. =..+|...+.+. |+++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~ 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec
Confidence 46668999999999997643 3321 11 223444444422 244455555443 555543
No 304
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=85.41 E-value=5.5 Score=48.10 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---hh-CCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHH---HH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---LI-CPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQE---IL 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L~-~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~---~l 476 (1136)
.|.=++|.|++|+|||...+--+ .. .+..+++++.= .=..+.+.++... ++....+ .|.....+... ..
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~ 272 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAA 272 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHH
Confidence 35558889999999997544222 22 24456666532 2233344444433 4443222 23333322211 12
Q ss_pred HHHhcccCcceEEE-eChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 477 RELNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
..+. ...+.| .+|..- .+.+...+..+.....+++||||=.+.|.
T Consensus 273 ~~l~----~~~l~i~d~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 273 GKLS----EAPLYIDDTPGLT--ITELRAKARRLKREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHh----cCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCEEEEcchHhcC
Confidence 2222 223333 344311 13333334333333458999999988874
No 305
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.29 E-value=8.1 Score=43.34 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|+.+++.+|.|+|||...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6888999999999999643
No 306
>PRK08506 replicative DNA helicase; Provisional
Probab=85.25 E-value=3.4 Score=50.54 Aligned_cols=142 Identities=22% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHH--cCCCeEEe-cCCCCHHHHHH---HHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQ--ANIPATFL-SGNMEWTEQQE---ILR 477 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~--~gI~v~~L-~g~~~~~~~~~---~l~ 477 (1136)
.|.=++|.|.||.|||..++--+ ...+..++|++.= .=..+.+.++.. .+++...+ .|..+..+... ...
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 269 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACD 269 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 35558888999999997654222 2334456666432 223444445543 25544333 34444333322 222
Q ss_pred HHhcccCcceEEE-eChhhhhchHHHHHHHHhhhhh-hccceeeeeccccccccCCCCccchhhhh-------hhhccCC
Q 001155 478 ELNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNAR-ELLARIVIDEAHCVSQWGHDFRPDYQGLG-------ILKQKFP 548 (1136)
Q Consensus 478 ~l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~-~~l~lVVIDEAH~ls~wGhdfR~~y~~L~-------~l~~~~p 548 (1136)
.+. ...+.| -+|. + +.+.+......+... ..+++||||=.+.|..-+ .+......+. .+... -
T Consensus 270 ~l~----~~~l~I~d~~~-~-ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~-~~~~r~~ev~~isr~LK~lAke-l 341 (472)
T PRK08506 270 ELS----KKKLFVYDSGY-V-NIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG-NFKDRHLQISEISRGLKLLARE-L 341 (472)
T ss_pred HHH----cCCeEEECCCC-C-CHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC-CCCCHHHHHHHHHHHHHHHHHH-h
Confidence 222 223433 2333 1 113333333333222 348999999999885322 1222222222 22222 2
Q ss_pred CCCEEEEee
Q 001155 549 NTPVLALTA 557 (1136)
Q Consensus 549 ~~~iv~LSA 557 (1136)
++|++++|-
T Consensus 342 ~ipVi~lsQ 350 (472)
T PRK08506 342 DIPIIALSQ 350 (472)
T ss_pred CCcEEEEee
Confidence 677777774
No 307
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.12 E-value=2.7 Score=51.89 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=15.6
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
.|+.+|.|+|||.++.+-+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lA 59 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILA 59 (509)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998765443
No 308
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=85.07 E-value=4 Score=44.16 Aligned_cols=33 Identities=24% Similarity=0.086 Sum_probs=22.2
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEc
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVIS 440 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIs 440 (1136)
|.-++|.+++|+|||...+--+. ..++.++||.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44588999999999975433222 2356777774
No 309
>PRK04328 hypothetical protein; Provisional
Probab=85.07 E-value=3.9 Score=45.64 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=32.1
Q ss_pred CCcEEEEccCCChHHHH-HHh--hhhhCCCcEEEEccChhhHHHHHHHHHHcCC
Q 001155 408 GHDVFVLMPTGGGKSLT-YQL--PALICPGITLVISPLVSLIQDQIMHLLQANI 458 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~-y~L--paL~~~g~~LVIsPtraL~~dqv~~L~~~gI 458 (1136)
|.-++|.+|+|+|||.. .++ -.+..+..++||+ +-+-..+..+.+.++|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 55699999999999864 333 3345566788887 33344445555555554
No 310
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.01 E-value=0.96 Score=57.18 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEecC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLSG 465 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g 465 (1136)
..++++.||||+|||..+.+|.++. ++-+||+=|--++........++.|-+|.++.-
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP 282 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDP 282 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3579999999999999999999876 667888889999877555555556767766653
No 311
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.97 E-value=3.7 Score=51.45 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=28.3
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHH
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 568 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~ 568 (1136)
...+++||||+|.|..- .+..|.......|..-++.|..|-+..+...|.
T Consensus 117 ~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~ 166 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTIR 166 (584)
T ss_pred CCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHH
Confidence 44689999999998642 333444444555544444444455544433333
No 312
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.90 E-value=3.7 Score=48.76 Aligned_cols=35 Identities=26% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCcEEEEccCCChHHHHHH-hhhh--hCCCcEEEEccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPAL--ICPGITLVISPL 442 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL--~~~g~~LVIsPt 442 (1136)
|.-+++.+++|+|||...+ +... ..+++++||+--
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4568999999999997543 3222 224677887754
No 313
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.87 E-value=1.9 Score=46.67 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.9
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+..+++.+|+|+|||..+.
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 314
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=84.83 E-value=3 Score=48.84 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=30.5
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHH
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
+..+++|||+||.|..-. -..|-......|..-++.|.++-+..+..-|.+
T Consensus 131 ~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S 181 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA------ANALLKTLEEPPPGTVFLLVSARIDRLLPTILS 181 (342)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh
Confidence 457899999999985321 223333444555545666666666655544444
No 315
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=84.80 E-value=1.7 Score=50.32 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=42.4
Q ss_pred hhCCCCCCHHHHHHHHHHHCCC-cEEEEccCCChHHHH-HHhhhh-hCCCcEEEEccChhh
Q 001155 388 VFGNHSFRPNQREIINATMSGH-DVFVLMPTGGGKSLT-YQLPAL-ICPGITLVISPLVSL 445 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~il~g~-dvLV~APTGsGKTl~-y~LpaL-~~~g~~LVIsPtraL 445 (1136)
+..|..+++-|...+..+...+ |+|+++.||||||.. ..|... -...++|.|=-+.+|
T Consensus 152 li~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 152 LIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 3367889999999999888755 999999999999964 222222 224477777666666
No 316
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.80 E-value=4.5 Score=47.07 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=51.4
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
|+-+.|.+|.|+|||..++-.+ ...++.++||..--++-.+ .+.++|+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~------------------------ 107 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL------------------------ 107 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH------------------------
Confidence 4568899999999997654322 2347788888876665432 333344321
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
-++++..|... +.+...+..+.....+++||||=+-.+
T Consensus 108 -~~l~v~~p~~~---eq~l~i~~~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 108 -DNLLISQPDTG---EQALEIADSLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred -HHheecCCCCH---HHHHHHHHHHHhccCCCEEEEcchHhh
Confidence 11455555433 112222333333346899999987665
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.77 E-value=3 Score=49.21 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.0
Q ss_pred EEEEccCCChHHHHHHhh
Q 001155 411 VFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lp 428 (1136)
+++.+|.|+|||..+..-
T Consensus 41 ~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLL 58 (363)
T ss_pred EEEecCCCCCHHHHHHHH
Confidence 689999999999876543
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.75 E-value=8.3 Score=46.76 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=28.5
Q ss_pred CcEEEEccCCChHHHHHH-hhh-hhC-CCcEEEEc--cChhhHHHHHHHHHHc-CCCe
Q 001155 409 HDVFVLMPTGGGKSLTYQ-LPA-LIC-PGITLVIS--PLVSLIQDQIMHLLQA-NIPA 460 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~-Lpa-L~~-~g~~LVIs--PtraL~~dqv~~L~~~-gI~v 460 (1136)
..+++++++|+|||.+.. |.. +.. +.++++|. +.+.-+.+|...+... ++++
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 358899999999997643 222 222 23444443 2344445555555432 4443
No 319
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.74 E-value=10 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCcEEEEccCCChHHHHHHhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+.+++.+|+|+|||..+..-+
T Consensus 156 p~gvLL~GppGtGKT~lakaia 177 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998765433
No 320
>PRK11054 helD DNA helicase IV; Provisional
Probab=84.58 E-value=2.1 Score=54.76 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=55.3
Q ss_pred chHHHHHHHHHhhC---CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhh--hh-----CCCcEEEEccChhhH
Q 001155 377 WTKKLEANNKKVFG---NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPA--LI-----CPGITLVISPLVSLI 446 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG---~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~Lpa--L~-----~~g~~LVIsPtraL~ 446 (1136)
|.+......+..|. -..|++-|.+|+.. ...+++|.|..|||||.+..--+ ++ .+..+|+++.++..+
T Consensus 177 ~~~~~l~~~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA 254 (684)
T PRK11054 177 WTEAMLEEYADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAA 254 (684)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHH
Confidence 34555555555553 24699999999853 34568999999999997643222 11 245899999999999
Q ss_pred HHHHHHHHHc
Q 001155 447 QDQIMHLLQA 456 (1136)
Q Consensus 447 ~dqv~~L~~~ 456 (1136)
.++.+++...
T Consensus 255 ~em~eRL~~~ 264 (684)
T PRK11054 255 EEMDERIRER 264 (684)
T ss_pred HHHHHHHHHh
Confidence 9888877653
No 321
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=84.53 E-value=1.4 Score=56.20 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH--hhhhh-C----CCcEEEEccChhhHHHHHHHHHHc
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ--LPALI-C----PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~--LpaL~-~----~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.|++-|.+|+.. ....++|.|+.|||||.+-. +.-++ . +..+|+|+.|+..+.++..++.+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 479999999865 34579999999999997632 22222 1 346999999999999888888654
No 322
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=84.50 E-value=1.1 Score=47.58 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=52.6
Q ss_pred EEEccCCChHHHHHHhhhh--hCC--CcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcce
Q 001155 412 FVLMPTGGGKSLTYQLPAL--ICP--GITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487 (1136)
Q Consensus 412 LV~APTGsGKTl~y~LpaL--~~~--g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ 487 (1136)
++.|+-|-|||.+--+.+- ... ..++|.+|..+=++..++.+. .+++..-+.... .........+. .....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~-~~l~~~~~~~~~--~~~~~~~~~~~--~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAE-KGLKALGYKEEK--KKRIGQIIKLR--FNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHH-hhcccccccccc--ccccccccccc--cccce
Confidence 5789999999987544432 222 368999999876654333222 122211111100 00000000000 13567
Q ss_pred EEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchh
Q 001155 488 LLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATAS 562 (1136)
Q Consensus 488 ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~ 562 (1136)
|-|..|+.+.. .....+++|||||=.|. +-.+.+.....+.++||.|..-+
T Consensus 76 i~f~~Pd~l~~------------~~~~~DlliVDEAAaIp------------~p~L~~ll~~~~~vv~stTi~GY 126 (177)
T PF05127_consen 76 IEFVAPDELLA------------EKPQADLLIVDEAAAIP------------LPLLKQLLRRFPRVVFSTTIHGY 126 (177)
T ss_dssp --B--HHHHCC------------T----SCEEECTGGGS-------------HHHHHHHHCCSSEEEEEEEBSST
T ss_pred EEEECCHHHHh------------CcCCCCEEEEechhcCC------------HHHHHHHHhhCCEEEEEeecccc
Confidence 88888887742 11125899999999872 12233444456788899997654
No 323
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=84.42 E-value=7.3 Score=43.78 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=24.3
Q ss_pred CCCcEEEEccCCChHHHHH-Hhhh--hhCCCcEEEEc
Q 001155 407 SGHDVFVLMPTGGGKSLTY-QLPA--LICPGITLVIS 440 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y-~Lpa--L~~~g~~LVIs 440 (1136)
.|.-++|.+|+|+|||... ++.. +..+.+++||+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3556999999999999743 3322 34466888888
No 324
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=84.36 E-value=7.4 Score=44.61 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=25.7
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHH
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
..++|||||+|.+.. ......|..+....+..-.+.++++-.......+..
T Consensus 100 ~~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred CCeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 357899999998721 111123344444444333445555544433333333
No 325
>PRK08840 replicative DNA helicase; Provisional
Probab=84.21 E-value=5.7 Score=48.58 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCCcEEEEccCCChHHHHHHhh----hhhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHHH---H
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLP----ALICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQEI---L 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lp----aL~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~~---l 476 (1136)
.|.=++|.|.||.|||.-++-- +...+..++|++.=-+ ..+.+.++... ++....+ .|..+..+.... .
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 294 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTM 294 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3545788899999999865322 1223445666653211 33444444332 4443322 334443333222 1
Q ss_pred HHHhcccCcceEEE-eChhhhhchHHHHHHHHhhhhh-hccceeeeeccccccc
Q 001155 477 RELNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNAR-ELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~-~~l~lVVIDEAH~ls~ 528 (1136)
..+.. ...+.| -+|..-. ..+..+...+... ..+++||||=.|.|..
T Consensus 295 ~~l~~---~~~l~I~d~~~~ti--~~i~~~~r~~~~~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 295 GILME---KKNMYIDDSSGLTP--TEVRSRARRIAREHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred HHHHh---cCCEEEECCCCCCH--HHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence 22211 222333 3333111 2233333333222 2489999999998853
No 326
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.16 E-value=2.9 Score=50.84 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.1
Q ss_pred cEEEEccCCChHHHH
Q 001155 410 DVFVLMPTGGGKSLT 424 (1136)
Q Consensus 410 dvLV~APTGsGKTl~ 424 (1136)
.+++.+++|+|||..
T Consensus 143 pl~i~G~~G~GKTHL 157 (450)
T PRK14087 143 PLFIYGESGMGKTHL 157 (450)
T ss_pred ceEEECCCCCcHHHH
Confidence 489999999999953
No 327
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=84.03 E-value=3.9 Score=45.94 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=56.3
Q ss_pred HHHHHHHCC-----CcEEEEccCCChHHH-HHHhhhhh--------CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecC
Q 001155 400 EIINATMSG-----HDVFVLMPTGGGKSL-TYQLPALI--------CPGITLVISPLVSLIQDQIMHLLQANIPATFLSG 465 (1136)
Q Consensus 400 eaI~~il~g-----~dvLV~APTGsGKTl-~y~LpaL~--------~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g 465 (1136)
..++.++.| .=+=+++|.|+|||- |.+|.+-. ..+.+|||----..-.+.+.++.+.-
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~-------- 96 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF-------- 96 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT--------
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc--------
Confidence 367777754 236689999999994 44554321 15679999865555444444443320
Q ss_pred CCCHHHHHHHHHHHhcccCcceEE-EeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 466 NMEWTEQQEILRELNSDYCKYKLL-YVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 466 ~~~~~~~~~~l~~l~~~~~~~~IL-V~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
+.+. ...+. ...+. +.+.+.+. ..+. .+........+++||||-+=.+
T Consensus 97 ~~~~---~~~l~-------~I~v~~~~~~~~l~--~~L~-~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 97 GLDP---EEILD-------NIFVIRVFDLEELL--ELLE-QLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp TS-H---HHHHH-------TEEEEE-SSHHHHH--HHHH-HHHHHHHHSCEEEEEEETSSHH
T ss_pred cccc---chhhh-------ceeeeecCCHHHHH--HHHH-HHHhhccccceEEEEecchHHH
Confidence 1111 12222 22222 22445443 3333 2333333456999999998765
No 328
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=83.98 E-value=2.1 Score=53.53 Aligned_cols=59 Identities=24% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHCC--CcEEEEccCCChHHHHHHhhhh----hCCCcEEEEccChhhHHHHHH
Q 001155 393 SFRPNQREIINATMSG--HDVFVLMPTGGGKSLTYQLPAL----ICPGITLVISPLVSLIQDQIM 451 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g--~dvLV~APTGsGKTl~y~LpaL----~~~g~~LVIsPtraL~~dqv~ 451 (1136)
..+|+|.+.++++-.. +.+.++.++-.|||.+.+..+. ..++.+|++.|+..++++.+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHH
Confidence 5689999999888753 5799999999999997554443 237889999999999988774
No 329
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.96 E-value=4.1 Score=50.22 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.8
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+|+++|.|+|||.++.+-+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999998875544
No 330
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.95 E-value=8 Score=49.76 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCcEEEEccCCChHHHHHH-hhhhh---CCC-cEEEEcc--ChhhHHHHHHHHHHc-CCCeE
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPALI---CPG-ITLVISP--LVSLIQDQIMHLLQA-NIPAT 461 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL~---~~g-~~LVIsP--traL~~dqv~~L~~~-gI~v~ 461 (1136)
++-+.+++|||+|||.+.. |.... .++ ++.+|.- .+.=+.+|...+... |+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc
Confidence 4568899999999987643 33322 232 3333332 222244555555543 55553
No 331
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.92 E-value=3.8 Score=49.72 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.9
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+++.+|+|+|||...
T Consensus 132 ~l~lyG~~G~GKTHLl 147 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL 147 (440)
T ss_pred eEEEEcCCCCcHHHHH
Confidence 5999999999999654
No 332
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=83.85 E-value=1.2 Score=55.97 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=44.2
Q ss_pred CcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcC-CCeEEecC
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQAN-IPATFLSG 465 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~g-I~v~~L~g 465 (1136)
.++++.||||+|||..+.+|-++. ++-+||+-|.-++..-.....++.| -+|.++.-
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 579999999999999999999876 6788888999999764444444455 56666543
No 333
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.85 E-value=3.8 Score=51.61 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=26.3
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
+..+++||||+|.|+.-. +..|.......|..-++.|.+|-+..+
T Consensus 123 g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEECCchhh
Confidence 347899999999986422 333444444444444455555655443
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.84 E-value=4.8 Score=44.45 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCcEEEEccCCChHHHHH-Hhhh-h-hCCCcEEEEccChhhHHHHHHHHHHcCC
Q 001155 407 SGHDVFVLMPTGGGKSLTY-QLPA-L-ICPGITLVISPLVSLIQDQIMHLLQANI 458 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y-~Lpa-L-~~~g~~LVIsPtraL~~dqv~~L~~~gI 458 (1136)
.|.-+++.+++|+|||... ++.. + ..+.++++|+.-. -..+.++.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~-~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL-TTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHhCC
Confidence 4667999999999999873 3322 3 3456788888443 33445555555554
No 335
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=83.72 E-value=6.7 Score=46.20 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=25.7
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
+..++|||||||.|..- ....|.......|...++.|.++.+..+
T Consensus 140 g~~rVviIDeAd~l~~~------aanaLLk~LEEpp~~~~fiLit~~~~~l 184 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN------AANAILKTLEEPPARALFILISHSSGRL 184 (351)
T ss_pred CCceEEEEEchhhcCHH------HHHHHHHHHhcCCCCceEEEEECChhhc
Confidence 45789999999998532 2223333444455444555555555443
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=83.64 E-value=8.8 Score=49.46 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.5
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
++++.+|+|+|||..+.+-+
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999998765443
No 337
>PRK09354 recA recombinase A; Provisional
Probab=83.58 E-value=6.4 Score=46.26 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=52.2
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
|+-+.|.+|+|+|||...+-.+ ...++.++||..--++-.+ .+..+|+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~---~a~~lGvdl------------------------ 112 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YAKKLGVDI------------------------ 112 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH---HHHHcCCCH------------------------
Confidence 4568899999999997644322 3447788888876666432 334444431
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
-++++..|.... .....+..+.....+++||||=+-.+
T Consensus 113 -d~lli~qp~~~E---q~l~i~~~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 113 -DNLLVSQPDTGE---QALEIADTLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred -HHeEEecCCCHH---HHHHHHHHHhhcCCCCEEEEeChhhh
Confidence 125566564432 22222333333346899999987765
No 338
>PHA02542 41 41 helicase; Provisional
Probab=83.52 E-value=5.6 Score=48.69 Aligned_cols=33 Identities=30% Similarity=0.043 Sum_probs=21.4
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEc
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVIS 440 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIs 440 (1136)
|.=++|.|++|.|||..++--+ ...+..++|++
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3347888999999998654322 23345666665
No 339
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=83.47 E-value=2.3 Score=60.39 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHCCC--cEEEEccCCChHHHHH------Hhhhhh-CCCcEEEEccChhhHHHHHHHHHHcCCCe
Q 001155 392 HSFRPNQREIINATMSGH--DVFVLMPTGGGKSLTY------QLPALI-CPGITLVISPLVSLIQDQIMHLLQANIPA 460 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~--dvLV~APTGsGKTl~y------~LpaL~-~~g~~LVIsPtraL~~dqv~~L~~~gI~v 460 (1136)
..|++.|++|+..++.+. -++|.++.|+|||... +.-++. .+..++.++||-.-+ ..|...|+.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa----~~L~~~g~~a 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV----GELKSAGVQA 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH----HHHHhcCCch
Confidence 468999999999998764 4788899999999764 111122 245677889995444 4444456554
No 340
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=83.41 E-value=5.9 Score=46.17 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=41.9
Q ss_pred CcceEEEeChh-h-hhchHHHHHH---HHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeec
Q 001155 484 CKYKLLYVTPE-K-VAKSDVLLRQ---LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTAT 558 (1136)
Q Consensus 484 ~~~~ILV~TPE-k-L~~~d~l~r~---l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT 558 (1136)
..+++.+..|+ . -..-+.+... +......+..+.+|||+||.|..-. -..|.......|..-++.|+++
T Consensus 72 ~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 72 NHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEEC
Confidence 36777777774 1 0111333322 2222233457899999999985422 2233344445554446666766
Q ss_pred cchhhHHHHHH
Q 001155 559 ATASVKEDVVQ 569 (1136)
Q Consensus 559 ~~~~v~~dI~~ 569 (1136)
-+..+..-|.+
T Consensus 146 ~~~~llpTI~S 156 (325)
T PRK06871 146 LSAALLPTIYS 156 (325)
T ss_pred ChHhCchHHHh
Confidence 66555444443
No 341
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=83.33 E-value=3 Score=47.97 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHH-CCCcEEEEccCCChHHHHH--HhhhhhC---CCcEEEEccChhh
Q 001155 393 SFRPNQREIINATM-SGHDVFVLMPTGGGKSLTY--QLPALIC---PGITLVISPLVSL 445 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~y--~LpaL~~---~g~~LVIsPtraL 445 (1136)
.+.+-|.+.+..+. .+++++|++|||+|||... ++-.+.. ..++++|-...+|
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 46677777776655 5679999999999999753 2222211 3566777666665
No 342
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.13 E-value=1.5 Score=46.40 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=24.4
Q ss_pred CCCcEEEEccCCChHHHHHHhhh--hhCCCcEEEEccChhhHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA--LICPGITLVISPLVSLIQ 447 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa--L~~~g~~LVIsPtraL~~ 447 (1136)
.++++++.+|+|+|||..+...+ +...+..++.++..+|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 47789999999999997543222 333555555555556654
No 343
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.09 E-value=2.8 Score=48.74 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHH-CCCcEEEEccCCChHHHHHH--hhhh---hCCCcEEEEccChhh
Q 001155 393 SFRPNQREIINATM-SGHDVFVLMPTGGGKSLTYQ--LPAL---ICPGITLVISPLVSL 445 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~y~--LpaL---~~~g~~LVIsPtraL 445 (1136)
.+.+.|.+.+..+. .+++++|+++||+|||.... +..+ ....++++|-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 36788888887655 57899999999999996432 2111 113456666666665
No 344
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.07 E-value=2.1 Score=47.99 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=34.1
Q ss_pred CCCcEEEEccCCChHHHHHHh--hhhhCCCcEEEEccChhhHHHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL--PALICPGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L--paL~~~g~~LVIsPtraL~~dqv~~L 453 (1136)
.+.++++.+|+|.|||..+.. -.+...|+-++++++-+|+.+....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 578999999999999965432 22345677888888888887554444
No 345
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=83.05 E-value=1.2 Score=56.52 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=42.7
Q ss_pred CcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.+++++||||+|||..+.+|-|+. .+-+||+=|--+|.........+.| +|.++.
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 579999999999999999999876 6788888899999775554444445 455443
No 346
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.93 E-value=3.6 Score=51.46 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.3
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
-+|+.+|.|+|||..+.+-+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998875543
No 347
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=6 Score=46.56 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.9
Q ss_pred CcEEEEccCCChHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y 425 (1136)
+.+|+.+|.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 56999999999999854
No 348
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=82.78 E-value=6.6 Score=42.16 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=23.6
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPL 442 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPt 442 (1136)
|.-+.+.+|+|+|||...+-.+. ..+..++||.--
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45589999999999976543322 234566776654
No 349
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=82.73 E-value=1.7 Score=50.60 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=47.6
Q ss_pred HHhhCCCCCCHHHHHHHHHHHCCC-c-EEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhH
Q 001155 386 KKVFGNHSFRPNQREIINATMSGH-D-VFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLI 446 (1136)
Q Consensus 386 k~~fG~~~lrpiQ~eaI~~il~g~-d-vLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~ 446 (1136)
+++||+...+..|.-|+..++... + +.+.++-|+|||+-++.+.+.. -.++||-=|+..+-
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 467899999999999999998643 2 7788999999999988887743 34566666776653
No 350
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=82.67 E-value=8.8 Score=45.96 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=40.9
Q ss_pred cceEEEeChhhhh-chHHHHHHHHhh---hhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccc
Q 001155 485 KYKLLYVTPEKVA-KSDVLLRQLESL---NARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATAT 560 (1136)
Q Consensus 485 ~~~ILV~TPEkL~-~~d~l~r~l~~l---~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~ 560 (1136)
.+++.+.+|+... .-+.+....... ......+++||||+|.|..-. ...|.......|...++.|++|-+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECCh
Confidence 5667777775321 112222211111 122346789999999985321 122333444555555667777766
Q ss_pred hhhHHHHHH
Q 001155 561 ASVKEDVVQ 569 (1136)
Q Consensus 561 ~~v~~dI~~ 569 (1136)
..+...|..
T Consensus 158 ~~llpTIrS 166 (394)
T PRK07940 158 EDVLPTIRS 166 (394)
T ss_pred HHChHHHHh
Confidence 655554444
No 351
>PRK06321 replicative DNA helicase; Provisional
Probab=82.53 E-value=7.2 Score=47.80 Aligned_cols=117 Identities=14% Similarity=0.076 Sum_probs=56.2
Q ss_pred CCcEEEEccCCChHHHHHHhhhh----hCCCcEEEEccChhhHHHHHHHHHH--cCCCeEEe-cCCCCHHHHHHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL----ICPGITLVISPLVSLIQDQIMHLLQ--ANIPATFL-SGNMEWTEQQEILRELN 480 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL----~~~g~~LVIsPtraL~~dqv~~L~~--~gI~v~~L-~g~~~~~~~~~~l~~l~ 480 (1136)
|.=++|.|.+|.|||.-++--+. ..+..++|++. -.=..+.+.++.. .+++...+ .+..+..+.........
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSL-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 304 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL-EMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVN 304 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 33367789999999976442222 22445666642 1112333444432 24544333 34443333222211111
Q ss_pred cccCcceEEEe-ChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 481 SDYCKYKLLYV-TPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 481 ~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
......+.|- +|..- .+.+......+.....+++||||=.+.|..
T Consensus 305 -~l~~~~~~idd~~~~t--i~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 305 -EMQEHTLLIDDQPGLK--ITDLRARARRMKESYDIQFLIIDYLQLLSG 350 (472)
T ss_pred -HHHcCCEEEeCCCCCC--HHHHHHHHHHHHHhcCCCEEEEcchHHcCC
Confidence 0123345553 33211 133344444444445589999999999853
No 352
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=82.50 E-value=2 Score=55.70 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=57.6
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh-
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV- 563 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v- 563 (1136)
...|+++||..|.. |++. .......|..|||||||++.+- +-.. .-++.+++..+..-+.||||.+...+
T Consensus 7 ~ggi~~~T~rIl~~-DlL~----~ri~~~~itgiiv~~Ahr~~~~---~~ea-FI~rlyr~~n~~gfIkafSdsP~~~~~ 77 (814)
T TIGR00596 7 EGGIFSITSRILVV-DLLT----GIIPPELITGILVLRADRIIES---SQEA-FILRLYRQKNKTGFIKAFSDNPEAFTM 77 (814)
T ss_pred cCCEEEEechhhHh-HHhc----CCCCHHHccEEEEeeccccccc---ccHH-HHHHHHHHhCCCcceEEecCCCccccc
Confidence 45699999998863 5443 3334456999999999998531 1111 22344556666667899999988743
Q ss_pred ----HHHHHHHhcCcceEE
Q 001155 564 ----KEDVVQALGLVNCII 578 (1136)
Q Consensus 564 ----~~dI~~~L~l~~~~i 578 (1136)
...+.+.|++....+
T Consensus 78 g~~~l~~vmk~L~i~~v~l 96 (814)
T TIGR00596 78 GFSPLETKMRNLFLRHVYL 96 (814)
T ss_pred chHHHHHHHHHhCcCeEEE
Confidence 567788887776544
No 353
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=82.42 E-value=1.8 Score=55.62 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhhh-----CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALI-----CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
..|++-|.+|+.. ....++|.|..|||||.+- -+.-|+ .+..+|+|+-|+..+.++..++.+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999864 3457999999999999752 222222 2457999999999999888888764
No 354
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=9.8 Score=43.38 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=62.3
Q ss_pred HHHHHCCC-----cEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHH
Q 001155 402 INATMSGH-----DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEIL 476 (1136)
Q Consensus 402 I~~il~g~-----dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l 476 (1136)
+|.++.|+ -+|+-+|.|+|||..+-..+-..+ -+.+-+..-.|+..|+.+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGE------------------------ 209 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGE------------------------ 209 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhcc------------------------
Confidence 35566664 489999999999964332222222 445544444554433211
Q ss_pred HHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCc-cchhhhh--hhhccCC----C
Q 001155 477 RELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFR-PDYQGLG--ILKQKFP----N 549 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR-~~y~~L~--~l~~~~p----~ 549 (1136)
-|+| .+.+..+...+..+.|.|||++.+...+.+-. ...++|. .+.++.. +
T Consensus 210 ----------------SEkL------VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 210 ----------------SEKL------VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ----------------HHHH------HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 1222 22233344445578999999998854332211 1223321 1222221 3
Q ss_pred CCEEEEeeccchhhHH
Q 001155 550 TPVLALTATATASVKE 565 (1136)
Q Consensus 550 ~~iv~LSAT~~~~v~~ 565 (1136)
--++.|.||-.+.+..
T Consensus 268 ~gvLVLgATNiPw~LD 283 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLD 283 (439)
T ss_pred CceEEEecCCCchhHH
Confidence 4588899997776654
No 355
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=82.14 E-value=5.7 Score=47.30 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH---CCCcEEEEccCCChHHHH
Q 001155 396 PNQREIINATM---SGHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 396 piQ~eaI~~il---~g~dvLV~APTGsGKTl~ 424 (1136)
+.=.++|+.+. .|+..+|.||.|+|||..
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 33345555544 578899999999999964
No 356
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=81.98 E-value=3.5 Score=50.59 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=55.2
Q ss_pred CCcEEEEccCCChHHHHHH---hhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQ---LPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~---LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
|.-++|.+|+|+|||...+ .-.+..+.+++||+ .-+-..+...+...+|+.. ... .. .+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~---------~~~---~~-----~g 324 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDF---------EEM---EQ-----QG 324 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCCh---------HHH---hh-----CC
Confidence 4569999999999997533 22334566888887 3344455666666666532 110 00 13
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
...|+-.-|....-.+.+....... .....++||||=+--+
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i-~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEI-ADFKPARIAIDSLSAL 365 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHH-HHcCCCEEEEcCHHHH
Confidence 4555554454432112222222222 2234788999987765
No 357
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.96 E-value=0.82 Score=52.19 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
...|+++++|||||||+.++
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 34589999999999998765
No 358
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.87 E-value=7.5 Score=48.84 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.1
Q ss_pred EEEEccCCChHHHHHHhh
Q 001155 411 VFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lp 428 (1136)
.|+.+|.|+|||.++.+-
T Consensus 41 yLf~Gp~G~GKtt~A~~l 58 (576)
T PRK14965 41 FLFTGARGVGKTSTARIL 58 (576)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999876543
No 359
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=81.60 E-value=6.2 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.|+-++|++|+|+|||....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH
Confidence 578899999999999976443
No 360
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=81.39 E-value=2.2 Score=55.01 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhhh-----CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALI-----CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
..|++-|.+|+.. ....++|.|..|||||.+- -+.-|+ .+..+|+|+-|+..+.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999864 3458999999999999653 222222 2457999999999999888888764
No 361
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=81.24 E-value=2.4 Score=49.73 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=30.8
Q ss_pred HHHHHHH-HCCCcEEEEccCCChHHHHH--HhhhhhCCCcEEEEccChhhH
Q 001155 399 REIINAT-MSGHDVFVLMPTGGGKSLTY--QLPALICPGITLVISPLVSLI 446 (1136)
Q Consensus 399 ~eaI~~i-l~g~dvLV~APTGsGKTl~y--~LpaL~~~g~~LVIsPtraL~ 446 (1136)
...+..+ ..+.+++|++|||||||... ++-.+-...+++.|-.+.+|.
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 3444443 46889999999999999752 222222245667777777663
No 362
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.21 E-value=3 Score=48.15 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.7
Q ss_pred CCcEEEEccCCChHHHH
Q 001155 408 GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~ 424 (1136)
++.+++.+|+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999964
No 363
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=80.92 E-value=14 Score=48.86 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=65.4
Q ss_pred hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH
Q 001155 430 LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507 (1136)
Q Consensus 430 L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~ 507 (1136)
+..+++++|++|+++-+......|.+. ++++..++|.++..++..++..+.. +..+|||+|- . +.+.+.
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILVaT~-i------ie~GID 727 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQVLVCTT-I------IETGID 727 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEECC-h------hhcccc
Confidence 345788999999999888777888775 7899999999999998888888776 7899999995 2 222222
Q ss_pred hhhhhhccceeeeecccc
Q 001155 508 SLNARELLARIVIDEAHC 525 (1136)
Q Consensus 508 ~l~~~~~l~lVVIDEAH~ 525 (1136)
...+++||++.++.
T Consensus 728 ----Ip~v~~VIi~~a~~ 741 (926)
T TIGR00580 728 ----IPNANTIIIERADK 741 (926)
T ss_pred ----cccCCEEEEecCCC
Confidence 23478999998876
No 364
>PRK06904 replicative DNA helicase; Validated
Probab=80.77 E-value=13 Score=45.60 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---h-hCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cC-CCCHHHHHHHH--
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---L-ICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SG-NMEWTEQQEIL-- 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L-~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g-~~~~~~~~~~l-- 476 (1136)
.|.=++|.|.||.|||.-++--+ . ..+..++|++.= -=..+.+.++... +++...+ .| ..+..+...+.
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a 298 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISST 298 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHH
Confidence 34447788999999998543221 1 224456666532 2233444454433 4544333 33 34433332221
Q ss_pred -HHHhcccCcceEEEe-ChhhhhchHHHHHHHHhhhhh-hccceeeeeccccccc
Q 001155 477 -RELNSDYCKYKLLYV-TPEKVAKSDVLLRQLESLNAR-ELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 477 -~~l~~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~-~~l~lVVIDEAH~ls~ 528 (1136)
..+.. ...+.|- +|. +. .+.+......+... ..+++||||=.+.|..
T Consensus 299 ~~~l~~---~~~l~I~d~~~-~t-~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 299 VGMFKQ---KPNLYIDDSSG-LT-PTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHhc---CCCEEEECCCC-CC-HHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 22211 2223332 332 11 12233333332222 2489999999998854
No 365
>PRK07004 replicative DNA helicase; Provisional
Probab=80.75 E-value=5.5 Score=48.67 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=55.8
Q ss_pred CCCcEEEEccCCChHHHHHHhhh----hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHH---HH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA----LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQE---IL 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa----L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~---~l 476 (1136)
.|.=++|.|.+|.|||..++--+ +..+..+++++. --=..+.+.++... +++...+ .|..+..+... ..
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~ 290 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAV 290 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35558889999999998654222 223445666642 11123334444322 3444323 34444333322 22
Q ss_pred HHHhcccCcceEEEe-ChhhhhchHHHHHHHHhhhhh-hccceeeeeccccccc
Q 001155 477 RELNSDYCKYKLLYV-TPEKVAKSDVLLRQLESLNAR-ELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~-~~l~lVVIDEAH~ls~ 528 (1136)
..+. ...+.|. +|. +. ...+..+...+... ..+++||||=.+.|..
T Consensus 291 ~~l~----~~~l~I~d~~~-~~-~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 291 QKMS----EAQLFIDETGG-LN-PMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHh----cCCEEEECCCC-CC-HHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 2222 3445543 343 21 12233333333222 3489999999999853
No 366
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=80.74 E-value=6.1 Score=41.17 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=42.8
Q ss_pred cceEEEeChhhh---hchHHHHHHHHhhh---hhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeec
Q 001155 485 KYKLLYVTPEKV---AKSDVLLRQLESLN---ARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTAT 558 (1136)
Q Consensus 485 ~~~ILV~TPEkL---~~~d~l~r~l~~l~---~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT 558 (1136)
.+++.+..|+.- ..-+.+........ .....+.+||||||.|.. .....|.......|..-++.|+++
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEEC
Confidence 566777776643 11133332222221 123578999999999853 222345556666666666677777
Q ss_pred cchhhHHHHHH
Q 001155 559 ATASVKEDVVQ 569 (1136)
Q Consensus 559 ~~~~v~~dI~~ 569 (1136)
-...+..-|..
T Consensus 141 ~~~~il~TI~S 151 (162)
T PF13177_consen 141 NPSKILPTIRS 151 (162)
T ss_dssp -GGGS-HHHHT
T ss_pred ChHHChHHHHh
Confidence 66665555443
No 367
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=80.66 E-value=3.5 Score=43.78 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHH-CCCcEEEEccCCChHHHHH
Q 001155 392 HSFRPNQREIINATM-SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~y 425 (1136)
..+.+-|.+.+...+ .+..+++++|||+|||...
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 457788888888776 5888999999999999753
No 368
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=80.65 E-value=6.1 Score=46.07 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHC-CC--cEEEEccCCChHHHHHHhhhh
Q 001155 384 NNKKVFGNHSFRPNQREIINATMS-GH--DVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 384 ~lk~~fG~~~lrpiQ~eaI~~il~-g~--dvLV~APTGsGKTl~y~LpaL 430 (1136)
.|..++|-..+- .|.-.+..++. ++ .+|+.+|.|+|||..+-+.+.
T Consensus 136 tL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 136 TLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred hHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 355556644322 23445555553 33 599999999999987655444
No 369
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.57 E-value=11 Score=46.99 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=15.7
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
+|+.+|.|+|||..+.+-+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999998765443
No 370
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.36 E-value=6.8 Score=46.88 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=12.8
Q ss_pred cEEEEccCCChHHH
Q 001155 410 DVFVLMPTGGGKSL 423 (1136)
Q Consensus 410 dvLV~APTGsGKTl 423 (1136)
-+++.+|+|+|||-
T Consensus 115 plfi~G~~GlGKTH 128 (408)
T COG0593 115 PLFIYGGVGLGKTH 128 (408)
T ss_pred cEEEECCCCCCHHH
Confidence 49999999999995
No 371
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=80.34 E-value=8.4 Score=48.59 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=16.6
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+|+.+|.|.|||..+.+-+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999998875544
No 372
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=80.27 E-value=7.1 Score=42.86 Aligned_cols=52 Identities=19% Similarity=0.103 Sum_probs=34.0
Q ss_pred CCcEEEEccCCChHHHHHHhh---hhhCCCcEEEEccChhhHHHHHHHHHHcCCCe
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP---ALICPGITLVISPLVSLIQDQIMHLLQANIPA 460 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp---aL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v 460 (1136)
|.-+++.+++|+|||...+-- .+..+.+++|++=-.. ..+.++.+.++|+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESVKIDI 79 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHCCCCh
Confidence 456899999999999653322 2344667777765433 355677777776543
No 373
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.24 E-value=2.8 Score=50.93 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 394 FRPNQREIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
+.+.|.+.+..+++... +||.+|||||||..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 47888888888887554 78889999999976
No 374
>PRK09401 reverse gyrase; Reviewed
Probab=80.03 E-value=11 Score=51.16 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=41.9
Q ss_pred CCcEEEEccChhh---HHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSL---IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL---~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
+..+||.+|++.- +......|...|+++..++|++ .. .+..... |..+|||+|.
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l--~~---~l~~F~~--G~~~VLVata 384 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF--ER---KFEKFEE--GEVDVLVGVA 384 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--HH---HHHHHHC--CCCCEEEEec
Confidence 4578999998655 8888899999999999999998 22 2244433 8999999984
No 375
>PRK08006 replicative DNA helicase; Provisional
Probab=79.93 E-value=11 Score=46.37 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=54.5
Q ss_pred CCcEEEEccCCChHHHHHHhhh----hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHHHH---H
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA----LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQEIL---R 477 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa----L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~~l---~ 477 (1136)
|.=++|.|.+|.|||.-++--+ ...+..++|++.= -=..+.+.++... ++....+ .|..+..+...+. .
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 302 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMG 302 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 4447788999999997654222 1234456666532 1123344444432 4444333 2444433332222 1
Q ss_pred HHhcccCcceEEEe-ChhhhhchHHHHHHHHhhhhh-hccceeeeeccccccc
Q 001155 478 ELNSDYCKYKLLYV-TPEKVAKSDVLLRQLESLNAR-ELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 478 ~l~~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~-~~l~lVVIDEAH~ls~ 528 (1136)
.+. ....+.|- +|. +. ...+......+... ..+++||||=.|+|..
T Consensus 303 ~~~---~~~~l~I~d~~~-~t-~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 350 (471)
T PRK08006 303 ILL---EKRNMYIDDSSG-LT-PTEVRSRARRIFREHGGLSLIMIDYLQLMRV 350 (471)
T ss_pred HHH---hcCCEEEECCCC-CC-HHHHHHHHHHHHHhcCCCCEEEEccHHHccC
Confidence 221 12333332 222 11 12222333222222 2589999999999853
No 376
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=79.81 E-value=1.4 Score=55.71 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=41.8
Q ss_pred CcEEEEccCCChHHHHHHhhhhhC-CCcEEEEccChhhHHHHHHHHHH-cCCCeEEec
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALIC-PGITLVISPLVSLIQDQIMHLLQ-ANIPATFLS 464 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~-~g~~LVIsPtraL~~dqv~~L~~-~gI~v~~L~ 464 (1136)
++++++||||+|||..+.+|.++. ++.+||+=|--++.........+ .|-+|..+.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999999876 67788888999887543333323 355665444
No 377
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=79.36 E-value=3.4 Score=47.99 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
..+++.+|+|+|||..+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4699999999999987553
No 378
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=79.23 E-value=3.1 Score=53.00 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH--hhhhh-----CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ--LPALI-----CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~--LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.|++-|.+++.. ...+++|.|..|||||.+-. +.-++ ....+|+|+.|+..+.+.-.++.+.
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 378999998864 35689999999999997532 22222 2356899999999998888777653
No 379
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=79.08 E-value=6.4 Score=45.77 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=50.6
Q ss_pred CCcEEEEccCCChHHHHHHhh---hhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP---ALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp---aL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
|+-++|.+|+|+|||..++-. +...++.++||..--++-.. .+.++|+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~------------------------ 107 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI------------------------ 107 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH------------------------
Confidence 456889999999999764322 22346778888665444332 233334321
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
-++++..|.... .....+..+.....+++||||=+-.+
T Consensus 108 -~~l~v~~p~~~e---q~l~~~~~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 108 -DNLLVSQPDTGE---QALEIAETLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred -HHeEEecCCCHH---HHHHHHHHHhhccCCcEEEEcchhhh
Confidence 125566665442 22222333333345899999988765
No 380
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.99 E-value=3.1 Score=46.80 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEE
Q 001155 399 REIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVI 439 (1136)
Q Consensus 399 ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVI 439 (1136)
++++..+..|+++++.+|+|+|||.++..-+-..+...+.+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34455566789999999999999987654443334444444
No 381
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.82 E-value=11 Score=42.96 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.8
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+++.+|.|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999998754
No 382
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=78.64 E-value=12 Score=48.62 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.4
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..++|+.+|+|+|||..+.
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999998754
No 383
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=78.53 E-value=4 Score=46.25 Aligned_cols=18 Identities=28% Similarity=0.491 Sum_probs=15.2
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
++|+.+|.|-|||..+.+
T Consensus 54 HvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred eEEeeCCCCCcHHHHHHH
Confidence 599999999999976544
No 384
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.50 E-value=5.7 Score=49.88 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.7
Q ss_pred EEEEccCCChHHHH
Q 001155 411 VFVLMPTGGGKSLT 424 (1136)
Q Consensus 411 vLV~APTGsGKTl~ 424 (1136)
++|.+++|+|||-.
T Consensus 317 L~LyG~sGsGKTHL 330 (617)
T PRK14086 317 LFIYGESGLGKTHL 330 (617)
T ss_pred EEEECCCCCCHHHH
Confidence 89999999999964
No 385
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.45 E-value=6.3 Score=48.97 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.5
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
.|+.+|.|+|||.++.+-+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998765443
No 386
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=78.29 E-value=6 Score=46.46 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=28.0
Q ss_pred CCcEEEEccCCChHHHH-HHhhhhh--------CCCcEEEEccChhhHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLT-YQLPALI--------CPGITLVISPLVSLIQDQIMH 452 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~-y~LpaL~--------~~g~~LVIsPtraL~~dqv~~ 452 (1136)
|.-+.|++|.|+|||.. .++.+-. ..+.++||.---.+--+++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ 179 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP 179 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH
Confidence 44588999999999953 3343321 136889998755443333333
No 387
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.22 E-value=7.3 Score=46.12 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH---CCCcEEEEccCCChHHHHH
Q 001155 396 PNQREIINATM---SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 396 piQ~eaI~~il---~g~dvLV~APTGsGKTl~y 425 (1136)
.+-.++|+.+. .|+.++|.+|.|+|||...
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl 150 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL 150 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH
Confidence 44456787776 5889999999999999753
No 388
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=78.16 E-value=16 Score=46.85 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.3
Q ss_pred EEEEccCCChHHHHHHhh
Q 001155 411 VFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lp 428 (1136)
.|++||.|+|||.++.+-
T Consensus 43 YLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 689999999999887544
No 389
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=77.86 E-value=2.6 Score=52.37 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhh
Q 001155 393 SFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL 430 (1136)
+|+.||.+.+..++ .|+-.|.-.|||+|||+.-+..++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 57889999888765 588899999999999987544443
No 390
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.82 E-value=5.1 Score=50.10 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.5
Q ss_pred cEEEEccCCChHHHHHHhh
Q 001155 410 DVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lp 428 (1136)
-.|+++|.|+|||.++-+-
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999876544
No 391
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=77.31 E-value=12 Score=40.73 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEcc
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISP 441 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsP 441 (1136)
|.-+++.+++|+|||...+-.+ +..+..++||.=
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4568999999999986543222 233456666653
No 392
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=77.18 E-value=13 Score=48.90 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.9
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..+.++.+|+|.|||....
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997654
No 393
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=77.12 E-value=10 Score=49.08 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.1
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..++|+.+|+|+|||....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999998753
No 394
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=77.07 E-value=3.1 Score=46.64 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=54.5
Q ss_pred CcEEEEccChhhHHHHHHHHHHc---CCCeEEecCCC-CHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhh
Q 001155 434 GITLVISPLVSLIQDQIMHLLQA---NIPATFLSGNM-EWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESL 509 (1136)
Q Consensus 434 g~~LVIsPtraL~~dqv~~L~~~---gI~v~~L~g~~-~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l 509 (1136)
+.+|||+..--=+.|.++.+..+ +..++-|.+-. ...++...+.. ..++|.|+||+++. .++... .+
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~-----~~~~i~vGTP~Rl~--kLle~~--~L 197 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKK-----TRVHIAVGTPGRLS--KLLENG--AL 197 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHh-----CCceEEEeChHHHH--HHHHcC--CC
Confidence 45677776655577888888876 24565565554 66676666654 57899999999996 444222 22
Q ss_pred hhhhccceeeeecccc
Q 001155 510 NARELLARIVIDEAHC 525 (1136)
Q Consensus 510 ~~~~~l~lVVIDEAH~ 525 (1136)
....+.+||||--|.
T Consensus 198 -~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 198 -SLSNLKRIVLDWSYL 212 (252)
T ss_pred -CcccCeEEEEcCCcc
Confidence 234578899986553
No 395
>PRK06749 replicative DNA helicase; Provisional
Probab=76.33 E-value=15 Score=44.59 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEec-C--CCCHHHHH---HHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSLIQDQIMHLLQA--NIPATFLS-G--NMEWTEQQ---EIL 476 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~-g--~~~~~~~~---~~l 476 (1136)
|.=++|.|.+|.|||..++--+. ..+..+++++.=- -..+.+.++... +++...+. + ..+..+.. ...
T Consensus 186 G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEM-s~~ql~~R~ls~~~~i~~~~l~~~~~~l~~~e~~~~~~a~ 264 (428)
T PRK06749 186 GDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEM-SSKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVSKAF 264 (428)
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeC-CHHHHHHHHHHhccCCCHHHHhcCcccCCHHHHHHHHHHH
Confidence 44478889999999976542222 2344566665321 123344444332 34433332 2 12222221 112
Q ss_pred HHHhcccCcceEEE-eChhhhhchHHHHHHHHhhhhhhc--cceeeeecccccc
Q 001155 477 RELNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNAREL--LARIVIDEAHCVS 527 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~~~--l~lVVIDEAH~ls 527 (1136)
..+ ....+.| -+|..-. +.+......+..... ..+||||=.|.|.
T Consensus 265 ~~l----~~~~i~i~d~~~~t~--~~I~~~~r~~~~~~~~~~~lvvIDyLqli~ 312 (428)
T PRK06749 265 AEI----GELPLEIYDNAGVTV--QDIWMQTRKLKRKHGDKKILIIVDYLQLIT 312 (428)
T ss_pred HHH----hcCCEEEECCCCCCH--HHHHHHHHHHHHhcCCCCcEEEEeChhhcC
Confidence 222 1233333 3333211 333433333332222 4599999999885
No 396
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=76.11 E-value=10 Score=44.36 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=44.9
Q ss_pred cceEEEeChhhh---hchHHHHHH---HHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeec
Q 001155 485 KYKLLYVTPEKV---AKSDVLLRQ---LESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTAT 558 (1136)
Q Consensus 485 ~~~ILV~TPEkL---~~~d~l~r~---l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT 558 (1136)
.+|+.+.+|+.- .+-+.+... +......+..+.+|||+||.|..-. -..|.......|..-++.|.+.
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA------ANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH------HHHHHHHhcCCCCCeEEEEEEC
Confidence 677888888731 111223222 2222233557899999999985421 2234444555555556677777
Q ss_pred cchhhHHHHHHH
Q 001155 559 ATASVKEDVVQA 570 (1136)
Q Consensus 559 ~~~~v~~dI~~~ 570 (1136)
-+..+..-|.+.
T Consensus 147 ~~~~lLpTIrSR 158 (334)
T PRK07993 147 EPARLLATLRSR 158 (334)
T ss_pred ChhhChHHHHhc
Confidence 666655555443
No 397
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=75.94 E-value=4.1 Score=52.59 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH--hhhhh-----CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ--LPALI-----CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~--LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
..|++-|.+|+.. ....++|.|..|||||.+-. +.-++ .+..+|+|+-|+.-+.++..++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4689999999874 34579999999999997532 22222 2356899999999888888777654
No 398
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.94 E-value=16 Score=48.13 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..++++.+|+|+|||....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3479999999999998653
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=75.82 E-value=3.2 Score=48.44 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHCCCcEEEEccCCChHHHH--HHhhhhhCCCcEEEEccChhh
Q 001155 405 TMSGHDVFVLMPTGGGKSLT--YQLPALICPGITLVISPLVSL 445 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~--y~LpaL~~~g~~LVIsPtraL 445 (1136)
+..+.+++|+++||||||.. +++..+-...++++|=-+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 34688999999999999964 233223234456665555555
No 400
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=75.78 E-value=9.5 Score=47.92 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=53.7
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..++||+++++..++.....|...++.+..++|+++..++..++..+.. +..+|||+|-
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLVaTd 315 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK--GQLEILVATD 315 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEeh
Confidence 5689999999999999999999999999999999999999888888876 7899999994
No 401
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=75.64 E-value=7.2 Score=46.86 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=53.3
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..++||.++++.-+......|...|+++..++|++...++..++..+.. +..+|||+|-
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTd 313 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR--GDLDILVATD 313 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc--CCCcEEEEec
Confidence 5689999999999999999999999999999999999888888888776 7899999994
No 402
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=75.57 E-value=13 Score=40.16 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=40.7
Q ss_pred cEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEE
Q 001155 410 DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLL 489 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~IL 489 (1136)
-+-+.+|.|||||. |+...++.|+.. .+.+++.++....+....+.+. .+..++
T Consensus 15 ~i~v~Gp~GSGKTa---------------------Lie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~----~g~~i~ 68 (202)
T COG0378 15 RIGVGGPPGSGKTA---------------------LIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL----PGEPII 68 (202)
T ss_pred EEEecCCCCcCHHH---------------------HHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC----CCCeeE
Confidence 46677899999994 556667777665 7888888887765555554431 244555
Q ss_pred EeChhhh
Q 001155 490 YVTPEKV 496 (1136)
Q Consensus 490 V~TPEkL 496 (1136)
-++.++.
T Consensus 69 ~v~TG~~ 75 (202)
T COG0378 69 GVETGKG 75 (202)
T ss_pred EeccCCc
Confidence 5555543
No 403
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.47 E-value=11 Score=46.27 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.5
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
.|+.+|.|+|||.++.+-+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998876544
No 404
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=75.47 E-value=4.2 Score=49.85 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHC-----C----CcEEEEccCCChHHHHHHhhhh---hC----CCcEEEEccChhhHHHHHHHHHHc
Q 001155 396 PNQREIINATMS-----G----HDVFVLMPTGGGKSLTYQLPAL---IC----PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 396 piQ~eaI~~il~-----g----~dvLV~APTGsGKTl~y~LpaL---~~----~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
|+|.-++..++. | +.+++..|=|.|||...-..++ .. +..++++++++.-+...+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 456666655551 2 2488999999999975322221 21 356889999999988777766654
No 405
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=75.45 E-value=10 Score=40.17 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.2
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+|+.+|.|.|||..+.
T Consensus 16 ~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL 32 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999997643
No 406
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.43 E-value=5.2 Score=45.66 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.0
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
.++++.+|.|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 359999999999997644
No 407
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.42 E-value=6.5 Score=48.56 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.5
Q ss_pred EEEEccCCChHHHHHHh
Q 001155 411 VFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~L 427 (1136)
+|+++|.|+|||.++.+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 49999999999987644
No 408
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=75.27 E-value=14 Score=40.03 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=24.5
Q ss_pred CCcEEEEccCCChHHHHHH-hhhh--hCC------CcEEEEccChh
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPAL--ICP------GITLVISPLVS 444 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL--~~~------g~~LVIsPtra 444 (1136)
|.-+.|.+|+|+|||...+ +.+. ..+ ..++||..-..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 4558999999999997544 3322 223 56777776443
No 409
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.06 E-value=5.7 Score=46.36 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=30.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHH
Q 001155 221 LCPETSSHIQDMKDMLIAISNELLDNATNLSPAQTEKLRQERLQLSKQ 268 (1136)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~lld~~~~l~~~~~~~~r~~~~~l~~~ 268 (1136)
-+|+..+.-.++...-..++..++.+ ..-.....+++++++..|..+
T Consensus 34 ~~P~~~~id~~i~~~~~~~~~~~l~~-~~~~~~~~~~l~~~~~~l~~~ 80 (329)
T PRK06835 34 KIPEIAEIDDEIAKLGIKLSRAILKN-PDKKEETLKELKEKITDLRVK 80 (329)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHH
Confidence 36777777788888888888888842 222245566677776666433
No 410
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.91 E-value=37 Score=35.54 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=27.6
Q ss_pred hhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccch
Q 001155 512 RELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATA 561 (1136)
Q Consensus 512 ~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~ 561 (1136)
....++||+||+=....+|. -+.- .+..+....|...-+.+|.--.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gl--i~~~-~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 93 SGEYDLVILDEINYALGYGL--LDVE-EVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred cCCCCEEEEechHhHhhCCC--CCHH-HHHHHHHcCCCCCEEEEECCCCC
Confidence 34589999999998877773 2222 22333344444445556665444
No 411
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=74.82 E-value=15 Score=44.26 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=53.8
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||.+++++-+......|...++.+..++|+++..++...+..+.. +..+|||+|-
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~vLVaTd 303 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD--GRVNVLVATD 303 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC--CCCcEEEEcc
Confidence 5789999999999999999999999999999999999999988888776 7899999994
No 412
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=74.69 E-value=14 Score=40.28 Aligned_cols=51 Identities=20% Similarity=0.085 Sum_probs=33.1
Q ss_pred CCcEEEEccCCChHHHH-HHhh--hhhCCCcEEEEccChhhHHHHHHHHHHcCCC
Q 001155 408 GHDVFVLMPTGGGKSLT-YQLP--ALICPGITLVISPLVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~-y~Lp--aL~~~g~~LVIsPtraL~~dqv~~L~~~gI~ 459 (1136)
|.-+++.+++|+|||.. .++. .+..+..++|++--. -..+..+.+..+|..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCCC
Confidence 45689999999999864 3343 234566777876544 345566666666543
No 413
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.31 E-value=16 Score=39.30 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=29.2
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchh
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATAS 562 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~ 562 (1136)
...++||+||+=....+| +-+.-.-+ .+....|.---|.||.--.+.
T Consensus 114 ~~ydlvVLDEi~~Al~~g--li~~eevi-~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 114 ESYDLVVLDELTYALKYG--YLDVEEVL-EALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred CCCCEEEEehhhHHHHCC--CccHHHHH-HHHHcCCCCCEEEEECCCCCH
Confidence 458999999999988887 33322222 233344444456677765554
No 414
>PRK07773 replicative DNA helicase; Validated
Probab=74.03 E-value=12 Score=49.48 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hC-CCcEEEEccChhhHHHHHHHHHHc--CCCeEEe-cCCCCHHHHHH---HHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---IC-PGITLVISPLVSLIQDQIMHLLQA--NIPATFL-SGNMEWTEQQE---ILR 477 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~-~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L-~g~~~~~~~~~---~l~ 477 (1136)
|.=++|.|++|.|||..++--+. .. +..++|++ +-.=..+.+.++... +++...+ .|..+..+... ...
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 295 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMG 295 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 44488899999999976543222 22 34555655 222234455555443 4443322 23333322211 112
Q ss_pred HHhcccCcceEEE-eChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 478 ELNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 478 ~l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
.+ ....+.| -+|..-. +.+..+...+.....+++||||=.+.|.
T Consensus 296 ~l----~~~~i~i~d~~~~~i--~~i~~~~r~~~~~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 296 EI----SEAPIFIDDTPNLTV--MEIRAKARRLRQEANLGLIVVDYLQLMT 340 (886)
T ss_pred HH----hcCCEEEECCCCCCH--HHHHHHHHHHHHhcCCCEEEEcchhhcC
Confidence 22 1334444 2332211 2333333333333458999999999885
No 415
>PTZ00110 helicase; Provisional
Probab=73.88 E-value=11 Score=47.13 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=53.7
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...++||.++++.-+......|...|+++..++|++...++..++..+.. +..+|||+|-
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTd 435 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSPIMIATD 435 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc--CCCcEEEEcc
Confidence 46799999999999998889998889999999999999998888888776 7889999985
No 416
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.82 E-value=14 Score=46.99 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.1
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+|+.+|.|+|||..+.+-+
T Consensus 40 a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred eEEEECCCCCChHHHHHHHH
Confidence 57999999999998765443
No 417
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=73.50 E-value=4 Score=51.38 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=58.6
Q ss_pred HHHHhcCCceEEEeeccccccccCCCccEE--------EEcCCCCCHhHHHHHhcccCCCCC---CcEEEEEeccccHHH
Q 001155 641 QKQWSKDEINIICATVAFGMGINKPDVRFV--------IHHSLPKSIEGYHQECGRAGRDGQ---RSSCVLYYSYSDFIR 709 (1136)
Q Consensus 641 ~~~F~~g~i~VLVAT~alg~GIDlP~V~~V--------Ih~d~P~Sie~YiQriGRAGR~G~---~g~~il~~~~~D~~~ 709 (1136)
.++|++|+-.|-|-..+++-||-+..-+.| |...+|||...-+|.+||+.|..+ +-..+++....-..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 357999999998889999999998765544 467799999999999999999776 445555555444455
Q ss_pred HHHHHhcCc
Q 001155 710 VKHMISQGV 718 (1136)
Q Consensus 710 ~~~li~~~~ 718 (1136)
+..++.+.+
T Consensus 930 FAS~VAKRL 938 (1300)
T KOG1513|consen 930 FASIVAKRL 938 (1300)
T ss_pred HHHHHHHHH
Confidence 555555443
No 418
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.21 E-value=18 Score=43.23 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=15.7
Q ss_pred EEEEccCCChHHHHHHhhh
Q 001155 411 VFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lpa 429 (1136)
+|+.+|.|+|||.++.+-+
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999998765433
No 419
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.03 E-value=10 Score=44.33 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.1
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+-+|+-+|.|+|||+++=..+
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA 206 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVA 206 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHH
Confidence 569999999999999764433
No 420
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=73.02 E-value=3.4 Score=46.34 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred HCCCcEEEEccCCChHHHHH--HhhhhhCC-CcEEEEccChhh
Q 001155 406 MSGHDVFVLMPTGGGKSLTY--QLPALICP-GITLVISPLVSL 445 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y--~LpaL~~~-g~~LVIsPtraL 445 (1136)
..+.++++++|||||||... ++-.+-.. .++++|-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34778999999999999753 33323334 566666666655
No 421
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=72.97 E-value=5.1 Score=46.33 Aligned_cols=53 Identities=26% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHHHHCC----CcEEEEccCCChHHHH---HHhhhhhCCCcEEEEc---cChhhHHHHHHHH
Q 001155 401 IINATMSG----HDVFVLMPTGGGKSLT---YQLPALICPGITLVIS---PLVSLIQDQIMHL 453 (1136)
Q Consensus 401 aI~~il~g----~dvLV~APTGsGKTl~---y~LpaL~~~g~~LVIs---PtraL~~dqv~~L 453 (1136)
+++.++.| .=+++.+|||+|||.- |-|-....+-.+|+-+ |..-|+.-+..++
T Consensus 262 vLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qy 324 (514)
T KOG2373|consen 262 VLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQY 324 (514)
T ss_pred HHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHH
Confidence 34455654 3489999999999952 5666666666666544 6667766555444
No 422
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=72.96 E-value=12 Score=46.54 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...+||.+.++..+......|...|+++..|+|+++...+...+..+.. +..+|+|+|-
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVaTD 331 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD--GELRVLVATD 331 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEEec
Confidence 4569999999999999999999999999999999999999999988885 8999999984
No 423
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.92 E-value=12 Score=45.71 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=58.1
Q ss_pred HHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 421 KSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 421 KTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
+.+..++..+. .+..+||.++++.-+.+....|.+.|+.+..++|+++..++..++..+.. +..+|||+|-
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~--g~~~vLVaT~ 284 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR--DEIQVVVATV 284 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc--CCCcEEEEec
Confidence 44444444443 34566999999999999999999999999999999999998888888775 7899999985
No 424
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.49 E-value=11 Score=48.41 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccc
Q 001155 502 LLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATAT 560 (1136)
Q Consensus 502 l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~ 560 (1136)
+...+..+......=++|||.-|.+.+-- ....++.+.+..| +...++.|=+-|
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~~~~-----l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLISDPA-----LHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccCccc-----HHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 34444444444445689999999986421 1133555555555 455555555433
No 425
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=72.38 E-value=15 Score=38.61 Aligned_cols=48 Identities=31% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCCcEEEEccCCChHHHHHH-hhh-hh-----------CCCcEEEEccChhhHHHHHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPA-LI-----------CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-Lpa-L~-----------~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.|.=+++.||+|+|||...+ +.+ +. .+++++||..=.. ..+...++..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 45569999999999997532 222 22 2457788776544 2334444444
No 426
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=72.37 E-value=10 Score=43.31 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=27.5
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHH
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKE 565 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~ 565 (1136)
....+||||||+.|.. ..-..+.......+..-.+.|++..+..+..
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~il~ 154 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKILP 154 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhccc
Confidence 4578999999999853 2223344455555544455555554444333
No 427
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.11 E-value=11 Score=47.50 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.1
Q ss_pred EEEEccCCChHHHHHHhh
Q 001155 411 VFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~Lp 428 (1136)
+|+.+|.|+|||.++.+-
T Consensus 41 ~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 41 YLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999876544
No 428
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=72.11 E-value=13 Score=41.60 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=61.7
Q ss_pred CcEEEEccCCChHHHH--HHhhhhhCCCcEEEEccChhh--HHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcc--
Q 001155 409 HDVFVLMPTGGGKSLT--YQLPALICPGITLVISPLVSL--IQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSD-- 482 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~--y~LpaL~~~g~~LVIsPtraL--~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~-- 482 (1136)
.|+|+.++-|+|||-. +++..+...|.-||=++.-.| +.+.+..+.....+..++..+.+.......++.+++-
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 5899999999999965 456666667777888887776 4567777777778888888777765555444444431
Q ss_pred -----cCcceEEEeChhhh
Q 001155 483 -----YCKYKLLYVTPEKV 496 (1136)
Q Consensus 483 -----~~~~~ILV~TPEkL 496 (1136)
.+.--+||+|-.+=
T Consensus 133 Ggle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 133 GGLEARPDNVLIYATSNRR 151 (249)
T ss_pred CccccCCCcEEEEEecchh
Confidence 23445778887664
No 429
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=72.07 E-value=23 Score=34.07 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=50.5
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
++++||.++++..+......|.+.+.++..+.|+.+..++......+.. +...|+++|..
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~ 87 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDV 87 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcCh
Confidence 5789999999999988888888888999999999988877777777665 56789998864
No 430
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=71.84 E-value=10 Score=46.11 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=53.4
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...+||.++++.-+......|...++.+..++|+++..++..++..+.. +..+|+|+|-
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLVaTd 300 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN--RSCSVLVATD 300 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEec
Confidence 5679999999999999999999999999999999999999888888775 7899999984
No 431
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=71.62 E-value=5.8 Score=46.84 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.2
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
-+++.+|.|+|||+.+-
T Consensus 150 gllL~GPPGcGKTllAr 166 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCE 166 (413)
T ss_pred EEEeeCCCCCCHHHHHH
Confidence 48889999999998653
No 432
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=71.44 E-value=10 Score=54.23 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHCCC--cEEEEccCCChHHHHHH--hhhhh-CCCcEEEEccChhhH
Q 001155 393 SFRPNQREIINATMSGH--DVFVLMPTGGGKSLTYQ--LPALI-CPGITLVISPLVSLI 446 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~--dvLV~APTGsGKTl~y~--LpaL~-~~g~~LVIsPtraL~ 446 (1136)
.|++.|.+++..++... -.+|.++.|+|||.+-. +-++. .+..+++++|+-.-+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA 487 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSA 487 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 58999999999998754 48899999999997632 22232 266788899996544
No 433
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=71.43 E-value=15 Score=40.60 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=27.6
Q ss_pred cEEEEccCCChHHHHHHhhhhhCCCcEEEE-ccChhhHHHHHHHHHHc
Q 001155 410 DVFVLMPTGGGKSLTYQLPALICPGITLVI-SPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~~g~~LVI-sPtraL~~dqv~~L~~~ 456 (1136)
++|+.+|.|.|||..+.+-+-..+....++ .|..+-..|....+..+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l 99 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL 99 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT-
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc
Confidence 599999999999987776665554333333 35544444555444443
No 434
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=71.39 E-value=22 Score=44.97 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhhh---CCCcEEEEccChhhHHHHHHH
Q 001155 378 TKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALI---CPGITLVISPLVSLIQDQIMH 452 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~---~~g~~LVIsPtraL~~dqv~~ 452 (1136)
.+.+...|+.+|++..+.. .+-..+..+-.+++.|==.|||.+- ++..+. .+-.++|++|.+..++..+++
T Consensus 228 a~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~e 303 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEE 303 (738)
T ss_pred HHHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHH
Confidence 4678888999999877664 3334556778999999999999742 333333 467899999999998888877
Q ss_pred HHHc
Q 001155 453 LLQA 456 (1136)
Q Consensus 453 L~~~ 456 (1136)
+...
T Consensus 304 I~~~ 307 (738)
T PHA03368 304 IGAR 307 (738)
T ss_pred HHHH
Confidence 7664
No 435
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=71.35 E-value=21 Score=43.71 Aligned_cols=62 Identities=23% Similarity=0.454 Sum_probs=35.4
Q ss_pred hhhccceeeeeccccccccCCCCccchhh-----hhhhh-ccCCCCCEEEEeeccchhhHHHHHHHhcCcce
Q 001155 511 ARELLARIVIDEAHCVSQWGHDFRPDYQG-----LGILK-QKFPNTPVLALTATATASVKEDVVQALGLVNC 576 (1136)
Q Consensus 511 ~~~~l~lVVIDEAH~ls~wGhdfR~~y~~-----L~~l~-~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~ 576 (1136)
+...+++||||++.+|.+|.. .-|-|.. |..+. ...|.-+.++.-+|-... .+.+.+++..+
T Consensus 595 YkS~lsiivvDdiErLiD~vp-IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~---~vL~~m~i~~~ 662 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVP-IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRR---EVLQEMGILDC 662 (744)
T ss_pred hcCcceEEEEcchhhhhcccc-cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHH---HHHHHcCHHHh
Confidence 345689999999999999953 4555532 33333 334444445445554432 34444555444
No 436
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=71.30 E-value=16 Score=38.67 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=28.8
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchh
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATAS 562 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~ 562 (1136)
...++||+||+=....+| +-+.-. +..+....|..--+.||..-.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~g--li~~~~-v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 96 PELDLVLLDELTYALKYG--YLDVEE-VVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred CCCCEEEehhhHHHHHCC--CcCHHH-HHHHHHhCCCCCEEEEECCCCCH
Confidence 458999999999888877 332222 22333444444456677765554
No 437
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.21 E-value=9.2 Score=44.34 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHH-CCCcEEEEccCCChHHHH--HHhhhhhCCCcEEEEccChhh
Q 001155 391 NHSFRPNQREIINATM-SGHDVFVLMPTGGGKSLT--YQLPALICPGITLVISPLVSL 445 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~--y~LpaL~~~g~~LVIsPtraL 445 (1136)
+..+.+.|..-+..+. .++++++|++||+|||.. +++..+-...+.+.|=-+.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 4567788777666555 688999999999999964 233333334566666666555
No 438
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=71.10 E-value=7 Score=53.49 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHh---hhhhC---CCcEEEEccChhhHHHHHHHHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQL---PALIC---PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~L---paL~~---~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
++++-|.+||. ..+.+++|.|.-|||||.+-.- -.+.. ...+|+|+=|++-+.++-.++.+
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 36889999997 3688999999999999987432 22222 24589999999998876666654
No 439
>PF12846 AAA_10: AAA-like domain
Probab=70.97 E-value=4.1 Score=45.62 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.9
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.+++|+++||+|||....
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997644
No 440
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=70.85 E-value=25 Score=41.77 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=25.5
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccch
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATA 561 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~ 561 (1136)
...++|||||+|.+.. .....|.......|...+++|++.-+.
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 4467899999999743 222334444555555555555554444
No 441
>PRK10436 hypothetical protein; Provisional
Probab=70.74 E-value=6.7 Score=47.91 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHC--CCcEEEEccCCChHHHH
Q 001155 394 FRPNQREIINATMS--GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 394 lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~ 424 (1136)
+.+-|.+.+..++. +.-+|+++|||||||..
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 46777777877664 34589999999999975
No 442
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=70.54 E-value=8.2 Score=43.60 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHC--CCcEEEEccCCChHHHH
Q 001155 394 FRPNQREIINATMS--GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 394 lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~ 424 (1136)
+.+.|.+.+..++. +..+++++|||+|||..
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 46778888877664 33589999999999975
No 443
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=70.30 E-value=6.1 Score=49.79 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=47.9
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcce
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYK 487 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ 487 (1136)
|.=+++++|.|.||| +|...+.+.+.+..++.. .|++...... + |.-+
T Consensus 350 GpILcLVGPPGVGKT---------------------SLgkSIA~al~RkfvR~s--LGGvrDEAEI---R------GHRR 397 (782)
T COG0466 350 GPILCLVGPPGVGKT---------------------SLGKSIAKALGRKFVRIS--LGGVRDEAEI---R------GHRR 397 (782)
T ss_pred CcEEEEECCCCCCch---------------------hHHHHHHHHhCCCEEEEe--cCccccHHHh---c------cccc
Confidence 334888899999999 466666666654433332 3444322211 1 3434
Q ss_pred EEEe-ChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccc
Q 001155 488 LLYV-TPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPD 536 (1136)
Q Consensus 488 ILV~-TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~ 536 (1136)
-.|+ -|+++.+ .+....-.+ -++++||+|.|+ .+||++
T Consensus 398 TYIGamPGrIiQ------~mkka~~~N--Pv~LLDEIDKm~---ss~rGD 436 (782)
T COG0466 398 TYIGAMPGKIIQ------GMKKAGVKN--PVFLLDEIDKMG---SSFRGD 436 (782)
T ss_pred cccccCChHHHH------HHHHhCCcC--CeEEeechhhcc---CCCCCC
Confidence 4444 4888852 222221111 468999999984 556643
No 444
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.29 E-value=11 Score=44.14 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=56.0
Q ss_pred hhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 430 LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 430 L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
+...|.+||.+.|++-+.....++.+.|-.|.+++|++...++..++.+.+. |..+|+|+|.-
T Consensus 327 ~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLitTnV 389 (477)
T KOG0332|consen 327 LLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE--GKEKVLITTNV 389 (477)
T ss_pred hhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc--CcceEEEEech
Confidence 3457889999999999999999999999999999999999999888888776 88999999864
No 445
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=70.23 E-value=25 Score=34.88 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.1
Q ss_pred EEEEccCCChHHHHHHh
Q 001155 411 VFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~L 427 (1136)
+++++|+|+|||..+..
T Consensus 2 ii~~G~pgsGKSt~a~~ 18 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKR 18 (143)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976543
No 446
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=69.95 E-value=8.4 Score=45.54 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=26.0
Q ss_pred CcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCC
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNM 467 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~ 467 (1136)
+|++.-+|.|+|||+++ ++|+ ...|+...+++|+.
T Consensus 385 RNilfyGPPGTGKTm~A-----------------relA-------r~SGlDYA~mTGGD 419 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA-----------------RELA-------RHSGLDYAIMTGGD 419 (630)
T ss_pred hheeeeCCCCCCchHHH-----------------HHHH-------hhcCCceehhcCCC
Confidence 58999999999999864 2332 24588888887764
No 447
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.87 E-value=18 Score=46.22 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA 511 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~ 511 (1136)
.+.++||.++++..+......|...|+++..++|++...++..++..+.. +..+|+|+|- .+ .+.+.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~-~L------~rGfD---- 507 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGIN-LL------REGLD---- 507 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcC-hh------cCCee----
Confidence 36789999999999999999999999999999999988888888887765 7899999873 23 22221
Q ss_pred hhccceeeeecccc
Q 001155 512 RELLARIVIDEAHC 525 (1136)
Q Consensus 512 ~~~l~lVVIDEAH~ 525 (1136)
...+++||+-+++.
T Consensus 508 iP~v~lVvi~Dadi 521 (655)
T TIGR00631 508 LPEVSLVAILDADK 521 (655)
T ss_pred eCCCcEEEEeCccc
Confidence 23378888877765
No 448
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.77 E-value=6.1 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=16.2
Q ss_pred EEEEccCCChHHHH--HHhhhhhC
Q 001155 411 VFVLMPTGGGKSLT--YQLPALIC 432 (1136)
Q Consensus 411 vLV~APTGsGKTl~--y~LpaL~~ 432 (1136)
+||.+|||||||.+ +++-.+..
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhc
Confidence 88899999999854 45554443
No 449
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=69.58 E-value=13 Score=45.38 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=52.7
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...+||.++++.-+......|...++.+..++|+++..++...+..+.. +..+|||+|-
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTd 303 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIRVLVATD 303 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcc
Confidence 3578999999999999999999999999999999999988888888776 7899999985
No 450
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=69.57 E-value=13 Score=45.83 Aligned_cols=51 Identities=22% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCcEEEEccCCChHHHHHH-h--hhhhCCCcEEEEccChhhHHHHHHHHHHcCCC
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-L--PALICPGITLVISPLVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-L--paL~~~g~~LVIsPtraL~~dqv~~L~~~gI~ 459 (1136)
|.-++|.+++|+|||...+ + -.+..+..++||+-. +-..+..+.+..+|+.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~ 326 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGID 326 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCC
Confidence 5568899999999997532 2 233456778888654 3355556666666543
No 451
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.53 E-value=9.9 Score=46.69 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=54.2
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||.+-|+--+.+..+.+...+.++..|+|+.+..++...+...+. |.+.|||+|-
T Consensus 341 ~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLVATd 399 (519)
T KOG0331|consen 341 EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE--GKSPVLVATD 399 (519)
T ss_pred CCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc--CCcceEEEcc
Confidence 6799999999999999999999989999999999999999999988766 8999999985
No 452
>PTZ00293 thymidine kinase; Provisional
Probab=69.38 E-value=8 Score=42.27 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=22.1
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtr 443 (1136)
|+=.++.+|.++|||.-.+--+. ..+..++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 44468899999999963222111 2255666666653
No 453
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=69.34 E-value=27 Score=44.39 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHH---CCCcEEEEccCCChHHHHHHhh---hhh-CCCcEEEEccChhhHHHHHHHHHH
Q 001155 395 RPNQREIINATM---SGHDVFVLMPTGGGKSLTYQLP---ALI-CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 395 rpiQ~eaI~~il---~g~dvLV~APTGsGKTl~y~Lp---aL~-~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
+|.=.+=|+.++ ..+-.++.+|=|.|||.+.-+. ++. .+..++|.+|...-+++.+..+..
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 444445555544 5667899999999999763322 222 366799999988887776666544
No 454
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=69.04 E-value=25 Score=41.08 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHC--CC---cEEEEccCCChHHHHHH
Q 001155 395 RPNQREIINATMS--GH---DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 395 rpiQ~eaI~~il~--g~---dvLV~APTGsGKTl~y~ 426 (1136)
+|+|...+..+.. ++ -+|+.+|.|.|||..+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 4666666666552 32 48899999999997654
No 455
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=68.98 E-value=22 Score=41.39 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=42.3
Q ss_pred cceEEEeChhhh---hchHHHHHHHHh---hhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeec
Q 001155 485 KYKLLYVTPEKV---AKSDVLLRQLES---LNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTAT 558 (1136)
Q Consensus 485 ~~~ILV~TPEkL---~~~d~l~r~l~~---l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT 558 (1136)
.+++.+..|+.- .+-+.+...... ....+..+++|||+||.|..-. -..|.......|..-++.|.++
T Consensus 73 HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 73 HPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred CCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEEC
Confidence 677777777531 111223221111 1223457899999999985321 2234444455555456667776
Q ss_pred cchhhHHHHHH
Q 001155 559 ATASVKEDVVQ 569 (1136)
Q Consensus 559 ~~~~v~~dI~~ 569 (1136)
-+..+..-|.+
T Consensus 147 ~~~~lLpTI~S 157 (319)
T PRK06090 147 NQKRLLPTIVS 157 (319)
T ss_pred ChhhChHHHHh
Confidence 66655554444
No 456
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=68.91 E-value=25 Score=43.18 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAR 512 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~ 512 (1136)
+.++||.+=|+-++.|..+-|...|+++..++++...-++..+++.|+. |.++|+|+- +++...+ ++
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~DvLVGI-------NLLREGL-Di--- 512 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGI-------NLLREGL-DL--- 512 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCccEEEee-------hhhhccC-CC---
Confidence 6789999999999999999999999999999999999999999999987 899999982 2232222 22
Q ss_pred hccceeeeecccc
Q 001155 513 ELLARIVIDEAHC 525 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ 525 (1136)
.-+++|.|=.||.
T Consensus 513 PEVsLVAIlDADK 525 (663)
T COG0556 513 PEVSLVAILDADK 525 (663)
T ss_pred cceeEEEEeecCc
Confidence 2388898888886
No 457
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=68.77 E-value=37 Score=38.19 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCC-cEEEEccCCChHHHHHH--hhhhhCCCcEEEEccC
Q 001155 407 SGH-DVFVLMPTGGGKSLTYQ--LPALICPGITLVISPL 442 (1136)
Q Consensus 407 ~g~-dvLV~APTGsGKTl~y~--LpaL~~~g~~LVIsPt 442 (1136)
.|+ -+.++++-|+|||..-- +..+.....++|+.|-
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~ 87 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK 87 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC
Confidence 444 58899999999998865 2222334445544443
No 458
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=68.55 E-value=23 Score=45.85 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=52.8
Q ss_pred CCcEEEEccCCChHHHHHH---hhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQ---LPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~---LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
|.-++|.+|+|+|||...+ ..+...+++++||..--++-.+ .+.++|+...
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~---~A~~lGvDl~----------------------- 113 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD---YAKKLGVDTD----------------------- 113 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH---HHHHcCCChh-----------------------
Confidence 4568899999999997542 3333557788888876666532 3344444321
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
+++|..|... +.+...+..+.....+++||||-+--+.
T Consensus 114 --~llv~~~~~~---E~~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 114 --SLLVSQPDTG---EQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred --HeEEecCCCH---HHHHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 1345555433 2222223333233458999999988764
No 459
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=68.54 E-value=20 Score=43.67 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=61.0
Q ss_pred CCChHHHHHHhhhhhC--CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 417 TGGGKSLTYQLPALIC--PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 417 TGsGKTl~y~LpaL~~--~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
+-.-| .=.++++|.. .+.+||.+.++.=+.-....|.+.|+++..|+|+....++...+..++. +..+|+|+|--
T Consensus 500 ~ed~k-~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~--~t~dIlVaTDv 576 (673)
T KOG0333|consen 500 SEDEK-RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE--GTGDILVATDV 576 (673)
T ss_pred cchHH-HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh--cCCCEEEEecc
Confidence 33344 3346666654 4689999999999988888999999999999999999999999988886 67899999863
No 460
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=68.40 E-value=4.7 Score=43.74 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=12.2
Q ss_pred EEEEccCCChHHHH
Q 001155 411 VFVLMPTGGGKSLT 424 (1136)
Q Consensus 411 vLV~APTGsGKTl~ 424 (1136)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 461
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=68.29 E-value=18 Score=44.98 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.4
Q ss_pred EEEEccCCChHHHHHHh
Q 001155 411 VFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~L 427 (1136)
.|+++|.|+|||.++.+
T Consensus 39 yLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 39 YLFSGLRGSGKTSSARI 55 (535)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 58999999999987653
No 462
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=68.18 E-value=7.5 Score=47.83 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHCCC--cEEEEccCCChHHHH
Q 001155 394 FRPNQREIINATMSGH--DVFVLMPTGGGKSLT 424 (1136)
Q Consensus 394 lrpiQ~eaI~~il~g~--dvLV~APTGsGKTl~ 424 (1136)
|.+-|.+.+..++... -+++++|||||||..
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 4678888888777533 378999999999976
No 463
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=67.80 E-value=2 Score=58.54 Aligned_cols=57 Identities=26% Similarity=0.431 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCC
Q 001155 637 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 637 R~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G 693 (1136)
+..++..|....+.+|++|.++..|+|.+.+..|++++.|.....|+|..||+-+..
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccch
Confidence 678999999999999999999999999999999999999999999999999998753
No 464
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=67.77 E-value=20 Score=41.53 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=23.9
Q ss_pred CCcEEEEccCCChHHHH-HHhhhhh--------CCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLT-YQLPALI--------CPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~-y~LpaL~--------~~g~~LVIsPtr 443 (1136)
|.-+.|++|+|+|||.. .++.+-. .++.++||.---
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 55688999999999964 3443321 134788887433
No 465
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=67.68 E-value=7.9 Score=48.52 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHC--CCcEEEEccCCChHHHH
Q 001155 394 FRPNQREIINATMS--GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 394 lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~ 424 (1136)
+.+-|.+.+..++. ..-+|+++|||||||.+
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 46777888877664 33588999999999976
No 466
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=66.82 E-value=13 Score=37.21 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCC--cEEEEccChhhHHHHHHHHHHcCCCeEEec--CCCCHHHHHHH
Q 001155 400 EIINATMSGHDVFVLMPTGGGKSLTYQLPALICPG--ITLVISPLVSLIQDQIMHLLQANIPATFLS--GNMEWTEQQEI 475 (1136)
Q Consensus 400 eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g--~~LVIsPtraL~~dqv~~L~~~gI~v~~L~--g~~~~~~~~~~ 475 (1136)
++-..+..+..+++.++.|+||+.++-.-.-.... ..+++.....+-.+.++. ..-...++. ...+...|...
T Consensus 13 ~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L 89 (138)
T PF14532_consen 13 QLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQ---AKGGTLYLKNIDRLSPEAQRRL 89 (138)
T ss_dssp HHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHH---CTTSEEEEECGCCS-HHHHHHH
T ss_pred HHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHH---cCCCEEEECChHHCCHHHHHHH
Confidence 33333445778999999999999986533322221 122222222222222222 222222222 33455555555
Q ss_pred HHHHhcc-cCcceEEEeChhhhh
Q 001155 476 LRELNSD-YCKYKLLYVTPEKVA 497 (1136)
Q Consensus 476 l~~l~~~-~~~~~ILV~TPEkL~ 497 (1136)
...+... ....++|++|-..+.
T Consensus 90 ~~~l~~~~~~~~RlI~ss~~~l~ 112 (138)
T PF14532_consen 90 LDLLKRQERSNVRLIASSSQDLE 112 (138)
T ss_dssp HHHHHHCTTTTSEEEEEECC-CC
T ss_pred HHHHHhcCCCCeEEEEEeCCCHH
Confidence 5555432 346788888766653
No 467
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.62 E-value=20 Score=45.49 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=16.2
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
..|+++|.|+|||.++.+-+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38899999999998865443
No 468
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=66.54 E-value=22 Score=43.71 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.2
Q ss_pred CcEEEEccCCChHHHHHHhhhhhCCC
Q 001155 409 HDVFVLMPTGGGKSLTYQLPALICPG 434 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL~~~g 434 (1136)
+-+|+.+|.|+|||+.+-..+...+.
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~ 302 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRS 302 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCC
Confidence 35999999999999987766654433
No 469
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=66.39 E-value=14 Score=45.82 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhCCCCCCH----HHHHHHHHHHC--CCcEEEEccCCChHHHHHH--hhhhh-------CCCcEEEEccC
Q 001155 378 TKKLEANNKKVFGNHSFRP----NQREIINATMS--GHDVFVLMPTGGGKSLTYQ--LPALI-------CPGITLVISPL 442 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrp----iQ~eaI~~il~--g~dvLV~APTGsGKTl~y~--LpaL~-------~~g~~LVIsPt 442 (1136)
.+-|...|.+.- -..++. +|.+==+.+.. ++-++|.+..|||||.+++ ++-|+ ..+.+||+.|.
T Consensus 191 dEvL~~~Lek~s-s~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 191 DEVLQRVLEKNS-SAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHHhcc-chhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 344555555542 223443 44444444443 4458999999999998765 22222 24559999999
Q ss_pred hhhHHHHHHHHHHcCC
Q 001155 443 VSLIQDQIMHLLQANI 458 (1136)
Q Consensus 443 raL~~dqv~~L~~~gI 458 (1136)
+-++.=.-+.|=.+|.
T Consensus 270 ~vFleYis~VLPeLGe 285 (747)
T COG3973 270 RVFLEYISRVLPELGE 285 (747)
T ss_pred HHHHHHHHHhchhhcc
Confidence 9887644444444443
No 470
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=66.28 E-value=12 Score=47.83 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCHHHHHH---HHHHHCC--CcEEEEccCCChHHHHHHhhh---hhCC--CcEEEEccChhhHHHHHHHH----HHcCCC
Q 001155 394 FRPNQREI---INATMSG--HDVFVLMPTGGGKSLTYQLPA---LICP--GITLVISPLVSLIQDQIMHL----LQANIP 459 (1136)
Q Consensus 394 lrpiQ~ea---I~~il~g--~dvLV~APTGsGKTl~y~Lpa---L~~~--g~~LVIsPtraL~~dqv~~L----~~~gI~ 459 (1136)
.+.-|.++ +..++.. +-+++.|.=|=|||.+.=|.+ .... ..++|.+|+.+=++..+..+ ..+|.+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~ 291 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYK 291 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCc
Confidence 34555554 4455543 358888999999998754322 2233 48999999988766333322 223433
Q ss_pred eEEecCC-CCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchh
Q 001155 460 ATFLSGN-MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQ 538 (1136)
Q Consensus 460 v~~L~g~-~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~ 538 (1136)
-.+.... ...... ......|=|..|.... . .-++||||||=.|.
T Consensus 292 ~~v~~d~~g~~~~~---------~~~~~~i~y~~P~~a~-----------~----~~DllvVDEAAaIp----------- 336 (758)
T COG1444 292 RKVAPDALGEIREV---------SGDGFRIEYVPPDDAQ-----------E----EADLLVVDEAAAIP----------- 336 (758)
T ss_pred cccccccccceeee---------cCCceeEEeeCcchhc-----------c----cCCEEEEehhhcCC-----------
Confidence 2221111 110000 0124567788887651 0 04889999998862
Q ss_pred hhhhhhccCCCCCEEEEeeccchh
Q 001155 539 GLGILKQKFPNTPVLALTATATAS 562 (1136)
Q Consensus 539 ~L~~l~~~~p~~~iv~LSAT~~~~ 562 (1136)
+-.+.......+.++||.|.--+
T Consensus 337 -lplL~~l~~~~~rv~~sTTIhGY 359 (758)
T COG1444 337 -LPLLHKLLRRFPRVLFSTTIHGY 359 (758)
T ss_pred -hHHHHHHHhhcCceEEEeeeccc
Confidence 11222222334678899996554
No 471
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.27 E-value=5.7 Score=39.61 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.8
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
++++.+|+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999754
No 472
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=5 Score=47.78 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=17.5
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
...|+|+.+|||+|||+.++-
T Consensus 225 eKSNvLllGPtGsGKTllaqT 245 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQT 245 (564)
T ss_pred ecccEEEECCCCCchhHHHHH
Confidence 345899999999999997653
No 473
>PTZ00424 helicase 45; Provisional
Probab=66.14 E-value=16 Score=43.20 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=52.5
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..++||.++++.-+......+...++.+..++|+++..++..++..+.. +..+|||+|-
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~ 325 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRVLITTD 325 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcc
Confidence 4678999999999998888898889999999999999998888887775 7899999995
No 474
>PRK09183 transposase/IS protein; Provisional
Probab=65.86 E-value=7.9 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.9
Q ss_pred HHCCCcEEEEccCCChHHHHHH
Q 001155 405 TMSGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~y~ 426 (1136)
+..+.++++.+|+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 3457899999999999996543
No 475
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=65.56 E-value=12 Score=47.61 Aligned_cols=57 Identities=25% Similarity=0.234 Sum_probs=36.0
Q ss_pred CCcEEEEccCCChHHHHHHh--hhhhC-CCcEEEEccChh--hHHHHHHHHHHcCCC--eEEec
Q 001155 408 GHDVFVLMPTGGGKSLTYQL--PALIC-PGITLVISPLVS--LIQDQIMHLLQANIP--ATFLS 464 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L--paL~~-~g~~LVIsPtra--L~~dqv~~L~~~gI~--v~~L~ 464 (1136)
..+++|+++||+|||..+.+ .-... +..++|+=|--. |.......+...|-. ...+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~dd~~~f~ 239 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRPDRFYYFH 239 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCCceEEEEe
Confidence 35899999999999987632 22233 455566666643 666555555666655 44444
No 476
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=65.45 E-value=12 Score=46.59 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
-+-+|+.+|.|+|||..+
T Consensus 223 prGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CCceeeeCCCCccHHHHH
Confidence 467999999999999754
No 477
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=65.43 E-value=12 Score=40.05 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChHHHH
Q 001155 408 GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~ 424 (1136)
+..++|.+|-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 35689999999999974
No 478
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.14 E-value=20 Score=45.49 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=28.4
Q ss_pred hhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhh
Q 001155 512 RELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASV 563 (1136)
Q Consensus 512 ~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v 563 (1136)
....++|||||+|.++.. ....|..+....|..-++.|++|-...+
T Consensus 119 ~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred cCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 344689999999998642 2334445555555555666666644433
No 479
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=65.05 E-value=21 Score=41.52 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=14.3
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
..|+.+|.|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 480
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=64.91 E-value=16 Score=46.46 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=53.2
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...+||+++++.-+.+....|...|+.+..++|+++...+...+..+.. +..+|||+|-
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~ILVATd 303 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD--GRLDILIATD 303 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC--CCCCEEEEcc
Confidence 4679999999999999999999999999999999999988888888776 7899999994
No 481
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=64.86 E-value=22 Score=44.69 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=21.4
Q ss_pred CCCCCccccChHHHHHHhhcCCCCHHHHccC
Q 001155 970 EGVMAYHIFGNATLQHLSKRVPRTEEELLEI 1000 (1136)
Q Consensus 970 ~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I 1000 (1136)
.++-.|.+|+.=+.-.+-...|.=.++++.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (563)
T PRK06647 495 GEVLYYKIFSGFEYNQLQAYKNEIRDEFLKE 525 (563)
T ss_pred CCeEEEeecccCcHHHHhhhchhhHHHhhcc
Confidence 4677778887777666666677666666654
No 482
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=64.72 E-value=6.2 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=19.5
Q ss_pred HHHHHH-CCCcEEEEccCCChHHHHH
Q 001155 401 IINATM-SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 401 aI~~il-~g~dvLV~APTGsGKTl~y 425 (1136)
.+..++ .++.+|+++|+|+|||...
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHH
Confidence 344444 5788999999999999863
No 483
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=64.64 E-value=66 Score=38.69 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=17.8
Q ss_pred CCcEEEEccCCChHHHHHHhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
.+.+++.+|+|+|||+.+-.-+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5679999999999998764433
No 484
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=64.64 E-value=26 Score=38.24 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCcEEEEccCCChHHHHHH-hhhh-h-C------CCcEEEEcc
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPAL-I-C------PGITLVISP 441 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL-~-~------~g~~LVIsP 441 (1136)
|.-+.+.+|.|+|||...+ +.+. . . ...+++|.-
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 4568999999999997654 4322 1 1 257788774
No 485
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=64.48 E-value=14 Score=47.55 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=46.4
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecc-ccccccCCCccEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVA-FGMGINKPDVRFVI 671 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~a-lg~GIDlP~V~~VI 671 (1136)
..|+.+..+||+++..+|..++..+.+|++.|+|+|.. +...+.+.++.+||
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 45789999999999999999999999999999999975 45567888999988
No 486
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=64.44 E-value=33 Score=41.93 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=52.4
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..++||.++++.-+......|...|+.+..++|++...++...+..+.. +..+|||+|-
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLvaT~ 393 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE--GKIRVLVATD 393 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEcc
Confidence 3589999999999998888888889999999999999998888888775 7899999984
No 487
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=64.41 E-value=14 Score=43.42 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHH-CCCcEEEEccCCChHHHHHH--hhhhhCCCcEEEEccChhh
Q 001155 393 SFRPNQREIINATM-SGHDVFVLMPTGGGKSLTYQ--LPALICPGITLVISPLVSL 445 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~y~--LpaL~~~g~~LVIsPtraL 445 (1136)
.+.+.+.+.+..+. .+.+++++++||+|||.... +-.+-...+.++|--..+|
T Consensus 162 ~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 162 TFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 36677888877766 46799999999999997432 2222223456666666666
No 488
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=64.34 E-value=17 Score=46.07 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=54.1
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
.+..+||.++++.-+......|.+.|+++..++++++..++..++..+.. +..+|||+|.-
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLVaT~a 295 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR--DDLQIVVATVA 295 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC--CCCCEEEEech
Confidence 35689999999999999999999999999999999999988888887765 78899999874
No 489
>CHL00095 clpC Clp protease ATP binding subunit
Probab=64.31 E-value=28 Score=45.80 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=16.6
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
..++++.+|+|.|||.++..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 35799999999999987643
No 490
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=64.16 E-value=13 Score=45.86 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.0
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
.+.+|+.+|+|+|||..+.
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 3579999999999998654
No 491
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=63.71 E-value=24 Score=43.09 Aligned_cols=49 Identities=22% Similarity=0.096 Sum_probs=29.6
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHcC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQAN 457 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~g 457 (1136)
|.-+++.+++|+|||...+--+ ...+++++||+.--+ ..|...+..++|
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcC
Confidence 4568999999999997543222 123467888876433 333444444444
No 492
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=63.69 E-value=9.5 Score=43.17 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=23.6
Q ss_pred EEEEccCCChHH-HHHHhhhhhC--------CCcEEEEc-----cChhh
Q 001155 411 VFVLMPTGGGKS-LTYQLPALIC--------PGITLVIS-----PLVSL 445 (1136)
Q Consensus 411 vLV~APTGsGKT-l~y~LpaL~~--------~g~~LVIs-----PtraL 445 (1136)
+=+|+..|+||| +|-||..... ++.++||+ |++-|
T Consensus 105 TEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL 153 (351)
T KOG1564|consen 105 TEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRL 153 (351)
T ss_pred HHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHH
Confidence 347899999999 4445544422 56789997 55555
No 493
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=63.64 E-value=6.6 Score=42.98 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=17.4
Q ss_pred EEEEccCCChHHHHHHhhhhhCCCcEE
Q 001155 411 VFVLMPTGGGKSLTYQLPALICPGITL 437 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~LpaL~~~g~~L 437 (1136)
.++.+|||+|||..++..+-..++.+|
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI 30 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVI 30 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEE
Confidence 578899999999877655555444333
No 494
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=63.60 E-value=15 Score=38.08 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=11.7
Q ss_pred EEEEccCCChHHHH
Q 001155 411 VFVLMPTGGGKSLT 424 (1136)
Q Consensus 411 vLV~APTGsGKTl~ 424 (1136)
+.+++++|+|||..
T Consensus 2 i~i~G~~gsGKTtl 15 (155)
T TIGR00176 2 LQIVGPKNSGKTTL 15 (155)
T ss_pred EEEECCCCCCHHHH
Confidence 46889999999963
No 495
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.46 E-value=35 Score=38.43 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHH-CCCcEEEEccCCChHHHHHHhhh
Q 001155 378 TKKLEANNKKVFGNHSFRPNQREIINATM-SGHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrpiQ~eaI~~il-~g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
-.+..+.++++-...-+.|--. +..-. --+.+++-+|.|+|||+|+-..+
T Consensus 182 ckeqieklrevve~pll~perf--v~lgidppkgvllygppgtgktl~arava 232 (435)
T KOG0729|consen 182 CKEQIEKLREVVELPLLHPERF--VNLGIDPPKGVLLYGPPGTGKTLCARAVA 232 (435)
T ss_pred hHHHHHHHHHHHhccccCHHHH--hhcCCCCCCceEEeCCCCCchhHHHHHHh
Confidence 3445555666544444444211 11111 13569999999999999975443
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=63.37 E-value=20 Score=44.04 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=34.8
Q ss_pred CCCcEEEEccCCChHHHHHH-h--hhhhC-CCcEEEEccChhhHHHHHHHHHHcCCC
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-L--PALIC-PGITLVISPLVSLIQDQIMHLLQANIP 459 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-L--paL~~-~g~~LVIsPtraL~~dqv~~L~~~gI~ 459 (1136)
.|.-++|.+|+|+|||.-++ + -.+.. +..+|||+= -+-..+..+...++|+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCCC
Confidence 35679999999999997543 2 22344 568888884 34455566666666653
No 497
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=63.11 E-value=7.7 Score=49.00 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHC--------CCc--EEEEccCCChH--HHHHHhhh-hhC-CCcEEEEccChhhHHHHHHHHHHc--
Q 001155 393 SFRPNQREIINATMS--------GHD--VFVLMPTGGGK--SLTYQLPA-LIC-PGITLVISPLVSLIQDQIMHLLQA-- 456 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~--------g~d--vLV~APTGsGK--Tl~y~Lpa-L~~-~g~~LVIsPtraL~~dqv~~L~~~-- 456 (1136)
.+...|.+++--+.. |.. .||--..|.|| |.+-++-- .+. ..++|+++=...|-.|--+.|...
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 466778887754432 322 44444555555 54332221 122 457999999988977777777665
Q ss_pred -CCCeEEecCCC----CHHHHHHHHHHHhcccCcceEEEeChhhhhch------H---HHHHHHHhhhhhhccceeeeec
Q 001155 457 -NIPATFLSGNM----EWTEQQEILRELNSDYCKYKLLYVTPEKVAKS------D---VLLRQLESLNARELLARIVIDE 522 (1136)
Q Consensus 457 -gI~v~~L~g~~----~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~------d---~l~r~l~~l~~~~~l~lVVIDE 522 (1136)
+|.|..|+--. +.++.. ...-.||++|.--|... . .|...+.++. ...=.+||+||
T Consensus 344 ~~I~V~alnK~KYakIss~en~---------n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~G-e~feGvIvfDE 413 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKISSKENT---------NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCG-EDFEGVIVFDE 413 (1300)
T ss_pred CCccceehhhcccccccccccC---------CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhh-hccceeEEehh
Confidence 57776655321 111110 12446999999777421 0 1111111111 11236799999
Q ss_pred cccccccCC--CCcc--chhhhhhhhccCCCCCEEEEeeccch
Q 001155 523 AHCVSQWGH--DFRP--DYQGLGILKQKFPNTPVLALTATATA 561 (1136)
Q Consensus 523 AH~ls~wGh--dfR~--~y~~L~~l~~~~p~~~iv~LSAT~~~ 561 (1136)
||.--..-. .-.+ .=+....+.+.+|+.+++.-|||-..
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs 456 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS 456 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC
Confidence 998643100 0000 00234457788999999999999443
No 498
>PTZ00035 Rad51 protein; Provisional
Probab=62.96 E-value=21 Score=41.78 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=22.6
Q ss_pred CCcEEEEccCCChHHHHHH-hhhh-h-------CCCcEEEEcc
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPAL-I-------CPGITLVISP 441 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL-~-------~~g~~LVIsP 441 (1136)
|.-+.+++|.|+|||...+ +... . .++.++||.-
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 4458899999999996543 3221 1 2567778774
No 499
>PHA00350 putative assembly protein
Probab=62.93 E-value=14 Score=44.20 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=13.1
Q ss_pred EEEEccCCChHHHHHH
Q 001155 411 VFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~ 426 (1136)
.++.+..|+|||+.+.
T Consensus 4 ~l~tG~pGSGKT~~aV 19 (399)
T PHA00350 4 YAIVGRPGSYKSYEAV 19 (399)
T ss_pred EEEecCCCCchhHHHH
Confidence 4788999999998653
No 500
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=62.22 E-value=26 Score=45.40 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=16.7
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.+|+.+|+|+|||+.+-.-+
T Consensus 488 ~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999998764433
Done!