Query 001155
Match_columns 1136
No_of_seqs 656 out of 3854
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 13:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 9.7E-79 3.3E-83 744.1 49.6 511 367-910 18-549 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 3.1E-74 1.1E-78 695.9 48.6 495 374-905 6-513 (523)
3 2db3_A ATP-dependent RNA helic 100.0 4E-44 1.4E-48 423.1 33.2 320 368-705 56-407 (434)
4 4f92_B U5 small nuclear ribonu 100.0 3.7E-45 1.3E-49 489.1 26.8 426 298-762 2-527 (1724)
5 3i5x_A ATP-dependent RNA helic 100.0 1.1E-43 3.6E-48 431.7 33.2 328 377-716 79-460 (563)
6 3sqw_A ATP-dependent RNA helic 100.0 1E-43 3.6E-48 434.2 32.9 328 377-716 28-409 (579)
7 2i4i_A ATP-dependent RNA helic 100.0 7.5E-43 2.6E-47 406.2 31.5 332 368-715 15-393 (417)
8 2j0s_A ATP-dependent RNA helic 100.0 1.5E-41 5.1E-46 395.3 31.8 327 368-714 37-392 (410)
9 3eiq_A Eukaryotic initiation f 100.0 4.3E-42 1.5E-46 399.0 27.1 327 374-715 44-397 (414)
10 1xti_A Probable ATP-dependent 100.0 3.3E-41 1.1E-45 388.7 33.3 328 374-715 12-367 (391)
11 1s2m_A Putative ATP-dependent 100.0 3.7E-41 1.3E-45 390.3 30.9 330 368-716 21-376 (400)
12 1hv8_A Putative ATP-dependent 100.0 3E-40 1E-44 376.1 32.1 325 374-715 10-355 (367)
13 3pey_A ATP-dependent RNA helic 100.0 2.8E-40 9.7E-45 380.0 30.0 328 368-717 5-368 (395)
14 2z0m_A 337AA long hypothetical 100.0 4.6E-40 1.6E-44 370.6 29.2 311 378-713 2-330 (337)
15 3fht_A ATP-dependent RNA helic 100.0 9.8E-40 3.3E-44 378.6 30.3 324 368-711 25-385 (412)
16 1fuu_A Yeast initiation factor 100.0 7.2E-41 2.5E-45 385.8 17.9 323 374-713 25-374 (394)
17 4f92_B U5 small nuclear ribonu 100.0 3.6E-40 1.2E-44 441.1 23.9 353 390-765 923-1365(1724)
18 3oiy_A Reverse gyrase helicase 100.0 4.8E-39 1.6E-43 375.9 26.2 318 379-715 8-376 (414)
19 4a4z_A Antiviral helicase SKI2 100.0 3.8E-39 1.3E-43 414.4 26.8 370 386-787 33-576 (997)
20 3fmp_B ATP-dependent RNA helic 100.0 9.7E-40 3.3E-44 389.4 15.3 324 374-715 96-456 (479)
21 4gl2_A Interferon-induced heli 100.0 1.8E-39 6.2E-44 404.2 15.6 360 393-773 7-585 (699)
22 2ykg_A Probable ATP-dependent 100.0 1.3E-38 4.6E-43 396.1 19.4 305 388-709 8-520 (696)
23 2zj8_A DNA helicase, putative 100.0 4E-37 1.4E-41 385.3 25.8 320 374-715 5-398 (720)
24 2p6r_A Afuhel308 helicase; pro 100.0 2E-37 7E-42 386.9 22.9 312 377-710 10-393 (702)
25 2va8_A SSO2462, SKI2-type heli 100.0 3.9E-36 1.3E-40 375.9 31.6 319 374-714 12-419 (715)
26 3fho_A ATP-dependent RNA helic 100.0 1.6E-37 5.4E-42 374.1 10.5 309 376-705 125-470 (508)
27 4a2p_A RIG-I, retinoic acid in 100.0 1E-35 3.5E-40 358.6 23.5 307 390-709 4-512 (556)
28 3l9o_A ATP-dependent RNA helic 100.0 2.8E-35 9.7E-40 381.6 26.8 313 391-727 182-621 (1108)
29 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-35 5.9E-40 379.8 24.4 308 388-708 243-752 (936)
30 2xgj_A ATP-dependent RNA helic 100.0 7.8E-35 2.7E-39 374.6 28.4 304 388-716 82-511 (1010)
31 3tbk_A RIG-I helicase domain; 100.0 2.1E-35 7.1E-40 355.1 19.0 303 393-710 4-512 (555)
32 1gm5_A RECG; helicase, replica 100.0 1.9E-34 6.3E-39 361.1 24.0 301 380-704 356-696 (780)
33 1wp9_A ATP-dependent RNA helic 100.0 3E-33 1E-37 327.8 30.2 298 393-709 9-479 (494)
34 4a2q_A RIG-I, retinoic acid in 100.0 3.8E-34 1.3E-38 362.3 24.1 306 387-709 242-753 (797)
35 4ddu_A Reverse gyrase; topoiso 100.0 9.4E-34 3.2E-38 367.3 27.4 278 379-677 65-388 (1104)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-34 6.5E-39 373.5 14.4 309 379-713 44-462 (1054)
37 1tf5_A Preprotein translocase 100.0 3.5E-31 1.2E-35 326.9 35.4 307 380-706 71-546 (844)
38 2oca_A DAR protein, ATP-depend 100.0 1.5E-32 5E-37 329.8 21.6 288 392-706 112-456 (510)
39 2eyq_A TRCF, transcription-rep 100.0 1.8E-31 6.1E-36 347.9 30.4 309 374-706 585-923 (1151)
40 2fwr_A DNA repair protein RAD2 100.0 1.1E-31 3.6E-36 319.3 18.9 271 393-701 93-448 (472)
41 2jlq_A Serine protease subunit 100.0 1.7E-31 5.8E-36 317.1 11.0 281 390-703 1-309 (451)
42 2fsf_A Preprotein translocase 100.0 4.6E-29 1.6E-33 307.2 29.9 307 380-706 62-584 (853)
43 1nkt_A Preprotein translocase 100.0 1.5E-28 5.2E-33 302.8 31.5 311 380-707 99-619 (922)
44 3rc3_A ATP-dependent RNA helic 100.0 6.8E-30 2.3E-34 315.5 18.5 291 396-719 143-458 (677)
45 2wv9_A Flavivirin protease NS2 100.0 1.6E-31 5.6E-36 330.5 2.9 276 393-703 215-531 (673)
46 1yks_A Genome polyprotein [con 100.0 6.2E-31 2.1E-35 311.4 5.5 263 405-702 5-296 (440)
47 2whx_A Serine protease/ntpase/ 100.0 2.6E-30 8.9E-35 317.5 8.6 281 391-703 169-476 (618)
48 2xau_A PRE-mRNA-splicing facto 100.0 1.5E-29 5.3E-34 317.9 15.4 310 368-707 72-445 (773)
49 3o8b_A HCV NS3 protease/helica 100.0 3E-30 1E-34 315.8 8.6 274 393-707 217-516 (666)
50 2z83_A Helicase/nucleoside tri 100.0 3E-30 1E-34 307.0 6.4 266 403-705 16-313 (459)
51 3h1t_A Type I site-specific re 100.0 4.1E-28 1.4E-32 296.9 23.7 290 393-705 178-558 (590)
52 2v6i_A RNA helicase; membrane, 100.0 4E-29 1.4E-33 295.1 10.6 265 407-703 1-288 (431)
53 3dmq_A RNA polymerase-associat 100.0 2.7E-27 9.3E-32 304.6 25.0 316 392-718 152-629 (968)
54 1z63_A Helicase of the SNF2/RA 99.9 5.6E-26 1.9E-30 272.0 21.5 283 392-701 36-447 (500)
55 3fe2_A Probable ATP-dependent 99.9 8.2E-26 2.8E-30 245.6 19.7 183 374-572 33-230 (242)
56 3ly5_A ATP-dependent RNA helic 99.9 1.7E-25 5.7E-30 246.8 17.5 189 369-572 53-255 (262)
57 3iuy_A Probable ATP-dependent 99.9 1.1E-25 3.7E-30 241.8 14.9 182 375-572 25-221 (228)
58 3mwy_W Chromo domain-containin 99.9 1.7E-24 5.8E-29 274.0 21.1 295 392-701 235-678 (800)
59 3jux_A Protein translocase sub 99.9 7.5E-23 2.6E-27 247.6 33.8 308 379-706 62-588 (822)
60 1q0u_A Bstdead; DEAD protein, 99.9 5.3E-25 1.8E-29 235.3 12.8 194 374-586 8-216 (219)
61 3ber_A Probable ATP-dependent 99.9 2.5E-24 8.7E-29 235.6 17.6 188 368-572 43-240 (249)
62 1vec_A ATP-dependent RNA helic 99.9 2.1E-24 7.2E-29 227.5 16.3 182 374-572 7-200 (206)
63 3bor_A Human initiation factor 99.9 2.7E-24 9.3E-29 233.1 15.8 188 368-572 30-227 (237)
64 2gxq_A Heat resistant RNA depe 99.9 8.1E-24 2.8E-28 223.0 18.4 183 374-572 5-198 (207)
65 2oxc_A Probable ATP-dependent 99.9 3.5E-24 1.2E-28 231.0 15.5 184 368-570 24-219 (230)
66 1wrb_A DJVLGB; RNA helicase, D 99.9 2.2E-24 7.5E-29 235.5 13.9 183 376-572 29-232 (253)
67 1t6n_A Probable ATP-dependent 99.9 6.1E-24 2.1E-28 226.8 16.7 186 369-571 15-212 (220)
68 2pl3_A Probable ATP-dependent 99.9 8.1E-24 2.8E-28 228.4 17.3 183 368-569 25-222 (236)
69 1z3i_X Similar to RAD54-like; 99.9 3.1E-23 1.1E-27 256.5 24.7 294 392-701 54-522 (644)
70 1qde_A EIF4A, translation init 99.9 8.6E-24 3E-28 226.0 15.8 186 368-572 14-209 (224)
71 3dkp_A Probable ATP-dependent 99.9 1.7E-24 5.8E-29 235.1 10.2 187 375-572 34-233 (245)
72 3fmo_B ATP-dependent RNA helic 99.9 2.2E-23 7.6E-28 234.6 14.4 185 368-572 92-290 (300)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.5E-22 1.2E-26 256.4 22.2 291 393-703 271-707 (1038)
74 1c4o_A DNA nucleotide excision 99.9 3.4E-21 1.2E-25 238.7 24.2 102 607-709 448-554 (664)
75 2d7d_A Uvrabc system protein B 99.8 2.7E-19 9.4E-24 221.6 23.0 102 607-709 454-560 (661)
76 2ipc_A Preprotein translocase 99.8 1.4E-17 4.7E-22 205.2 31.6 137 379-527 66-215 (997)
77 3b6e_A Interferon-induced heli 99.8 5.6E-19 1.9E-23 186.4 9.6 160 390-558 30-216 (216)
78 2hjv_A ATP-dependent RNA helic 99.8 5.9E-18 2E-22 173.1 14.9 96 620-715 57-152 (163)
79 3eaq_A Heat resistant RNA depe 99.7 1.1E-17 3.7E-22 178.8 16.8 95 620-714 53-147 (212)
80 1t5i_A C_terminal domain of A 99.7 9.8E-18 3.4E-22 173.3 14.2 88 620-707 53-140 (172)
81 2rb4_A ATP-dependent RNA helic 99.7 1.1E-17 3.8E-22 172.9 14.2 96 620-715 56-157 (175)
82 1fuk_A Eukaryotic initiation f 99.7 1.7E-17 5.9E-22 169.8 15.0 96 620-715 52-147 (165)
83 2vl7_A XPD; helicase, unknown 99.7 1.7E-17 5.7E-22 201.3 14.9 137 389-527 4-188 (540)
84 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.3E-17 4.5E-22 174.5 11.0 95 620-714 68-162 (185)
85 2e1f_A Werner syndrome ATP-dep 99.7 1.6E-17 5.4E-22 157.3 10.2 88 947-1037 11-98 (103)
86 2p6n_A ATP-dependent RNA helic 99.7 3.3E-17 1.1E-21 172.5 13.1 91 620-710 76-167 (191)
87 2dgz_A Werner syndrome protein 99.7 1.7E-17 5.7E-22 159.5 9.6 88 947-1037 18-105 (113)
88 2fz4_A DNA repair protein RAD2 99.7 5.9E-17 2E-21 176.1 14.5 140 392-563 92-232 (237)
89 3i32_A Heat resistant RNA depe 99.7 1E-16 3.5E-21 180.3 15.1 95 620-714 50-144 (300)
90 2kv2_A Bloom syndrome protein; 99.7 3.7E-17 1.3E-21 149.9 8.9 78 948-1027 4-81 (85)
91 2rrd_A BLM HRDC domain, HRDC d 99.7 5.6E-17 1.9E-21 153.1 9.9 79 948-1028 19-97 (101)
92 2rhf_A DNA helicase RECQ; HRDC 99.7 5.6E-17 1.9E-21 146.0 8.4 73 950-1024 4-76 (77)
93 1rif_A DAR protein, DNA helica 99.7 1.1E-16 3.6E-21 177.8 12.4 145 393-563 113-266 (282)
94 1wud_A ATP-dependent DNA helic 99.7 8.1E-17 2.8E-21 148.9 7.4 76 950-1027 12-87 (89)
95 3llm_A ATP-dependent RNA helic 99.6 1.1E-16 3.8E-21 173.2 7.8 156 391-572 59-228 (235)
96 2yjt_D ATP-dependent RNA helic 99.4 1.3E-17 4.6E-22 171.6 0.0 94 620-713 52-145 (170)
97 3crv_A XPD/RAD3 related DNA he 99.6 8.5E-14 2.9E-18 169.2 27.9 132 393-528 3-187 (551)
98 3aaf_A Werner syndrome ATP-dep 99.4 5.4E-14 1.8E-18 139.7 5.6 102 791-898 9-110 (134)
99 4a15_A XPD helicase, ATP-depen 99.4 1E-11 3.4E-16 152.9 23.0 73 393-465 3-87 (620)
100 1z5z_A Helicase of the SNF2/RA 99.3 3.7E-12 1.3E-16 141.2 7.5 80 621-700 136-217 (271)
101 3saf_A Exosome component 10; e 98.9 6.4E-10 2.2E-14 130.3 7.3 71 951-1023 329-399 (428)
102 2hbj_A Exosome complex exonucl 98.9 1E-09 3.5E-14 128.4 7.6 72 951-1024 313-384 (410)
103 1yt3_A Ribonuclease D, RNAse D 98.8 3.2E-09 1.1E-13 123.0 8.6 72 950-1024 213-284 (375)
104 3cym_A Uncharacterized protein 98.5 4.5E-08 1.5E-12 115.5 4.6 73 950-1024 233-324 (440)
105 1w36_D RECD, exodeoxyribonucle 97.7 0.00013 4.5E-09 89.5 11.7 76 379-454 135-217 (608)
106 4b3f_X DNA-binding protein smu 97.6 0.00023 7.8E-09 88.0 11.8 73 392-464 188-264 (646)
107 1d8b_A SGS1 RECQ helicase; fiv 97.5 0.00017 5.7E-09 64.0 7.1 60 951-1012 6-65 (81)
108 2gk6_A Regulator of nonsense t 97.4 0.001 3.5E-08 81.9 14.3 74 391-464 178-255 (624)
109 2xzl_A ATP-dependent helicase 97.1 0.0017 5.8E-08 82.1 12.8 73 391-463 358-434 (802)
110 2wjy_A Regulator of nonsense t 97.1 0.0018 6.1E-08 81.9 12.9 74 391-464 354-431 (800)
111 3e1s_A Exodeoxyribonuclease V, 96.0 0.006 2E-07 74.3 6.2 58 393-450 189-249 (574)
112 2o0j_A Terminase, DNA packagin 94.5 0.17 5.7E-06 58.5 11.9 63 393-455 163-230 (385)
113 3upu_A ATP-dependent DNA helic 93.5 0.078 2.7E-06 62.5 6.7 62 390-451 22-92 (459)
114 3te6_A Regulatory protein SIR3 93.5 0.3 1E-05 55.0 11.0 18 408-425 45-62 (318)
115 3cpe_A Terminase, DNA packagin 93.2 0.37 1.3E-05 58.7 12.1 63 393-455 163-230 (592)
116 2chg_A Replication factor C sm 92.2 0.53 1.8E-05 48.0 10.1 17 409-425 39-55 (226)
117 2p65_A Hypothetical protein PF 92.1 0.36 1.2E-05 48.0 8.3 18 408-425 43-60 (187)
118 4a1f_A DNAB helicase, replicat 91.7 0.34 1.2E-05 55.0 8.5 113 408-527 46-169 (338)
119 3vkw_A Replicase large subunit 91.7 0.14 4.8E-06 60.1 5.3 44 411-456 164-207 (446)
120 2q6t_A DNAB replication FORK h 91.6 0.64 2.2E-05 54.5 11.0 115 408-528 200-324 (444)
121 3lfu_A DNA helicase II; SF1 he 91.6 0.15 5.3E-06 62.2 5.9 63 392-456 8-77 (647)
122 2r6a_A DNAB helicase, replicat 91.6 0.53 1.8E-05 55.4 10.2 116 407-528 202-327 (454)
123 2dr3_A UPF0273 protein PH0284; 90.5 1.2 4.2E-05 46.7 11.0 51 407-458 22-75 (247)
124 1jbk_A CLPB protein; beta barr 90.4 1.6 5.5E-05 43.1 11.2 18 408-425 43-60 (195)
125 1njg_A DNA polymerase III subu 89.7 0.98 3.3E-05 46.5 9.2 16 410-425 47-62 (250)
126 2orw_A Thymidine kinase; TMTK, 89.6 0.76 2.6E-05 47.2 8.1 36 408-443 3-41 (184)
127 2b8t_A Thymidine kinase; deoxy 89.5 0.24 8.1E-06 53.0 4.3 36 408-443 12-50 (223)
128 2zpa_A Uncharacterized protein 89.5 0.59 2E-05 57.5 8.2 116 393-563 175-292 (671)
129 2qby_B CDC6 homolog 3, cell di 89.2 0.79 2.7E-05 51.7 8.7 24 846-869 316-339 (384)
130 2v1u_A Cell division control p 89.1 0.77 2.6E-05 51.6 8.5 24 846-869 328-351 (387)
131 2hjv_A ATP-dependent RNA helic 89.0 1 3.6E-05 44.8 8.4 60 432-493 34-93 (163)
132 2rb4_A ATP-dependent RNA helic 88.9 0.96 3.3E-05 45.6 8.2 59 433-493 34-92 (175)
133 2r2a_A Uncharacterized protein 88.9 0.57 2E-05 49.0 6.6 17 410-426 7-23 (199)
134 2kjq_A DNAA-related protein; s 88.4 0.64 2.2E-05 46.1 6.3 19 407-425 35-53 (149)
135 2cvh_A DNA repair and recombin 88.3 1.4 4.8E-05 45.4 9.2 35 408-442 20-54 (220)
136 1fuk_A Eukaryotic initiation f 88.0 1.2 4.1E-05 44.4 8.1 60 432-493 29-88 (165)
137 1a5t_A Delta prime, HOLB; zinc 87.8 1 3.4E-05 50.6 8.3 32 395-426 4-42 (334)
138 3vfd_A Spastin; ATPase, microt 87.8 0.76 2.6E-05 52.7 7.4 24 408-431 148-171 (389)
139 1g5t_A COB(I)alamin adenosyltr 87.8 1.4 4.9E-05 46.0 8.7 36 408-443 28-66 (196)
140 2p6n_A ATP-dependent RNA helic 87.6 2.4 8.1E-05 43.7 10.3 73 418-493 39-112 (191)
141 1t5i_A C_terminal domain of A 87.5 1.5 5E-05 44.3 8.4 60 432-493 30-89 (172)
142 3eaq_A Heat resistant RNA depe 87.1 1.4 4.7E-05 46.2 8.3 61 431-493 29-89 (212)
143 3dm5_A SRP54, signal recogniti 87.0 3.6 0.00012 48.3 12.5 52 410-461 102-159 (443)
144 3syl_A Protein CBBX; photosynt 86.9 2 6.9E-05 46.9 9.9 18 409-426 68-85 (309)
145 3h4m_A Proteasome-activating n 86.7 1.1 3.9E-05 48.4 7.6 23 407-429 50-72 (285)
146 3ec2_A DNA replication protein 86.6 0.86 2.9E-05 45.9 6.1 32 395-426 16-56 (180)
147 2qby_A CDC6 homolog 1, cell di 86.5 1.9 6.6E-05 48.1 9.7 24 846-869 325-348 (386)
148 1uaa_A REP helicase, protein ( 86.3 0.54 1.8E-05 58.0 5.4 62 393-456 2-70 (673)
149 3u61_B DNA polymerase accessor 86.3 1 3.5E-05 49.9 7.1 51 514-570 105-156 (324)
150 1d2n_A N-ethylmaleimide-sensit 86.2 1.8 6E-05 46.8 8.8 20 409-428 65-84 (272)
151 3bos_A Putative DNA replicatio 86.2 0.59 2E-05 48.7 4.8 18 408-425 52-69 (242)
152 2jgn_A DBX, DDX3, ATP-dependen 86.2 1.3 4.5E-05 45.3 7.3 58 433-492 46-103 (185)
153 1pjr_A PCRA; DNA repair, DNA r 86.1 0.78 2.7E-05 57.2 6.7 63 392-456 10-79 (724)
154 1l8q_A Chromosomal replication 86.0 0.95 3.3E-05 50.2 6.7 18 409-426 38-55 (324)
155 2zan_A Vacuolar protein sortin 85.9 1.9 6.3E-05 50.6 9.4 23 408-430 167-189 (444)
156 1sxj_A Activator 1 95 kDa subu 85.8 0.85 2.9E-05 54.5 6.5 21 409-429 78-98 (516)
157 3bh0_A DNAB-like replicative h 85.6 3.3 0.00011 46.0 10.9 113 408-527 68-194 (315)
158 1fnn_A CDC6P, cell division co 85.6 1.6 5.5E-05 49.1 8.4 23 847-869 329-351 (389)
159 3eie_A Vacuolar protein sortin 85.1 1.5 5.3E-05 48.7 7.8 20 409-428 52-71 (322)
160 2z43_A DNA repair and recombin 85.0 2.9 9.9E-05 46.7 10.1 38 408-445 107-153 (324)
161 1sxj_D Activator 1 41 kDa subu 84.6 2.8 9.4E-05 46.6 9.6 17 409-425 59-75 (353)
162 3co5_A Putative two-component 84.1 3 0.0001 40.5 8.6 89 405-495 24-116 (143)
163 1u94_A RECA protein, recombina 83.9 3.2 0.00011 47.2 9.9 35 408-442 63-100 (356)
164 1xwi_A SKD1 protein; VPS4B, AA 83.9 2 6.8E-05 48.0 8.1 21 409-429 46-66 (322)
165 3u4q_A ATP-dependent helicase/ 83.5 1.2 4.2E-05 58.9 7.0 62 392-455 9-79 (1232)
166 3hgt_A HDA1 complex subunit 3; 83.3 1.9 6.7E-05 48.4 7.5 75 614-693 141-221 (328)
167 3n70_A Transport activator; si 83.2 3.9 0.00013 39.7 9.0 91 406-496 22-117 (145)
168 3i32_A Heat resistant RNA depe 83.1 3.3 0.00011 46.0 9.3 60 432-493 27-86 (300)
169 1n0w_A DNA repair protein RAD5 83.0 6 0.0002 41.2 11.0 37 407-443 23-68 (243)
170 1xp8_A RECA protein, recombina 82.0 3.6 0.00012 47.0 9.3 37 408-444 74-113 (366)
171 3kl4_A SRP54, signal recogniti 81.9 7.1 0.00024 45.6 11.9 52 410-461 99-156 (433)
172 1v5w_A DMC1, meiotic recombina 81.9 5.4 0.00018 45.0 10.7 37 408-444 122-167 (343)
173 1w5s_A Origin recognition comp 81.6 2.8 9.6E-05 47.5 8.3 23 847-869 349-371 (412)
174 2z4s_A Chromosomal replication 81.4 2.5 8.7E-05 49.4 8.0 18 409-426 131-148 (440)
175 2zr9_A Protein RECA, recombina 81.3 4.2 0.00014 46.1 9.5 35 408-442 61-98 (349)
176 3pvs_A Replication-associated 81.2 2.5 8.5E-05 49.7 7.8 21 409-429 51-71 (447)
177 1iqp_A RFCS; clamp loader, ext 80.7 2.3 7.9E-05 46.5 7.0 17 410-426 48-64 (327)
178 3bgw_A DNAB-like replicative h 80.0 5.3 0.00018 46.8 10.0 113 408-527 197-323 (444)
179 3hr8_A Protein RECA; alpha and 79.5 4.9 0.00017 45.7 9.3 38 408-445 61-101 (356)
180 3d8b_A Fidgetin-like protein 1 79.5 2.7 9.3E-05 47.6 7.2 23 408-430 117-139 (357)
181 2w0m_A SSO2452; RECA, SSPF, un 79.3 12 0.00041 38.4 11.6 35 407-441 22-59 (235)
182 2i4i_A ATP-dependent RNA helic 79.2 5.1 0.00017 45.4 9.5 60 432-493 275-334 (417)
183 1jr3_A DNA polymerase III subu 78.7 1.4 4.8E-05 49.4 4.5 17 410-426 40-56 (373)
184 1sxj_B Activator 1 37 kDa subu 78.3 6.8 0.00023 42.6 9.8 16 410-425 44-59 (323)
185 4b4t_J 26S protease regulatory 77.4 12 0.00041 43.3 11.7 20 408-427 182-201 (405)
186 3cmu_A Protein RECA, recombina 77.3 6.2 0.00021 54.3 10.6 94 402-526 1415-1517(2050)
187 1w4r_A Thymidine kinase; type 76.7 2.3 7.8E-05 44.4 5.0 36 407-442 19-57 (195)
188 2gno_A DNA polymerase III, gam 76.4 4.9 0.00017 44.6 8.0 48 514-567 82-129 (305)
189 3fht_A ATP-dependent RNA helic 75.8 5.1 0.00017 45.1 8.1 60 432-493 265-324 (412)
190 1j8m_F SRP54, signal recogniti 75.5 17 0.00058 40.1 12.0 53 408-460 98-156 (297)
191 1hv8_A Putative ATP-dependent 75.3 6.2 0.00021 43.5 8.4 60 432-493 237-296 (367)
192 3pey_A ATP-dependent RNA helic 75.3 5.5 0.00019 44.4 8.1 59 433-493 243-301 (395)
193 2ffh_A Protein (FFH); SRP54, s 75.1 19 0.00067 41.8 12.8 53 408-460 98-156 (425)
194 1xti_A Probable ATP-dependent 74.2 6.5 0.00022 44.0 8.4 60 432-493 249-308 (391)
195 2chq_A Replication factor C sm 74.0 5.4 0.00019 43.3 7.5 17 410-426 40-56 (319)
196 1s2m_A Putative ATP-dependent 73.7 6.4 0.00022 44.3 8.2 60 432-493 257-316 (400)
197 4b4t_H 26S protease regulatory 73.4 14 0.00049 43.4 11.1 55 368-427 206-262 (467)
198 3hjh_A Transcription-repair-co 73.0 11 0.00037 44.7 10.1 88 408-497 14-114 (483)
199 2i1q_A DNA repair and recombin 73.0 7.9 0.00027 42.8 8.6 18 408-425 98-115 (322)
200 2orv_A Thymidine kinase; TP4A 72.9 3.6 0.00012 44.1 5.4 37 408-444 19-58 (234)
201 3e70_C DPA, signal recognition 72.0 17 0.00059 40.7 11.1 53 408-460 129-187 (328)
202 2j0s_A ATP-dependent RNA helic 72.0 7 0.00024 44.2 8.0 61 432-494 275-335 (410)
203 1vma_A Cell division protein F 71.8 23 0.00079 39.3 11.9 53 408-460 104-162 (306)
204 3cym_A Uncharacterized protein 71.2 4.5 0.00015 47.4 6.2 70 951-1022 363-435 (440)
205 3cmw_A Protein RECA, recombina 71.0 8.7 0.0003 52.1 9.5 89 408-527 732-823 (1706)
206 2v1x_A ATP-dependent DNA helic 70.8 11 0.00037 45.9 9.7 61 432-494 266-326 (591)
207 2zts_A Putative uncharacterize 70.4 1.5 5.3E-05 45.9 1.9 48 408-456 30-81 (251)
208 3hws_A ATP-dependent CLP prote 70.3 10 0.00036 42.6 8.9 26 407-432 50-75 (363)
209 3e2i_A Thymidine kinase; Zn-bi 70.0 3.8 0.00013 43.4 4.8 36 408-443 28-66 (219)
210 2db3_A ATP-dependent RNA helic 70.0 14 0.00047 42.7 10.0 59 433-493 300-358 (434)
211 1oyw_A RECQ helicase, ATP-depe 69.5 8.9 0.0003 45.7 8.5 61 432-494 235-295 (523)
212 2yhs_A FTSY, cell division pro 69.1 26 0.0009 41.6 12.1 52 410-461 295-352 (503)
213 1r6b_X CLPA protein; AAA+, N-t 68.8 10 0.00034 47.3 9.1 19 408-426 207-225 (758)
214 1qvr_A CLPB protein; coiled co 68.7 8.6 0.00029 48.8 8.5 19 408-426 191-209 (854)
215 1e9r_A Conjugal transfer prote 68.0 2.7 9.3E-05 48.7 3.5 40 408-447 53-95 (437)
216 4a74_A DNA repair and recombin 68.0 15 0.00052 37.6 9.0 37 407-443 24-69 (231)
217 2yjt_D ATP-dependent RNA helic 70.4 1.1 3.9E-05 44.8 0.0 59 433-493 30-88 (170)
218 2px0_A Flagellar biosynthesis 67.1 16 0.00054 40.3 9.2 48 408-455 105-158 (296)
219 1cr0_A DNA primase/helicase; R 66.3 32 0.0011 37.2 11.5 35 407-441 34-72 (296)
220 1yt3_A Ribonuclease D, RNAse D 66.0 5.5 0.00019 45.5 5.5 69 950-1020 303-371 (375)
221 3io5_A Recombination and repai 65.2 13 0.00044 41.8 8.0 86 410-526 30-123 (333)
222 2j37_W Signal recognition part 64.1 39 0.0013 40.2 12.4 53 410-462 103-161 (504)
223 3i5x_A ATP-dependent RNA helic 63.9 13 0.00043 44.3 8.3 60 433-494 339-401 (563)
224 3sqw_A ATP-dependent RNA helic 63.6 13 0.00044 44.7 8.3 60 433-494 288-350 (579)
225 1wp9_A ATP-dependent RNA helic 63.3 10 0.00034 43.2 7.0 59 432-492 360-426 (494)
226 1c4o_A DNA nucleotide excision 63.0 19 0.00065 44.3 9.8 60 432-493 438-497 (664)
227 3lda_A DNA repair protein RAD5 63.0 20 0.00069 41.3 9.4 37 407-443 177-222 (400)
228 2d7d_A Uvrabc system protein B 63.0 18 0.00063 44.4 9.7 81 432-525 444-524 (661)
229 3eiq_A Eukaryotic initiation f 62.9 6.9 0.00024 44.1 5.5 60 433-494 280-339 (414)
230 1zu4_A FTSY; GTPase, signal re 62.8 45 0.0015 37.1 12.0 47 408-454 105-156 (320)
231 1q57_A DNA primase/helicase; d 62.8 24 0.00083 41.6 10.4 35 407-441 241-279 (503)
232 2xxa_A Signal recognition part 61.0 45 0.0016 38.8 12.0 44 410-453 102-151 (433)
233 2oap_1 GSPE-2, type II secreti 60.9 10 0.00036 45.2 6.7 32 393-424 244-276 (511)
234 3b85_A Phosphate starvation-in 57.6 9 0.00031 40.0 4.8 35 391-425 5-39 (208)
235 3cmu_A Protein RECA, recombina 57.6 21 0.00071 49.3 9.4 97 400-527 369-474 (2050)
236 2w58_A DNAI, primosome compone 56.9 12 0.00041 37.9 5.5 18 409-426 55-72 (202)
237 2r44_A Uncharacterized protein 56.3 10 0.00035 41.9 5.3 24 403-426 41-64 (331)
238 2eyq_A TRCF, transcription-rep 56.0 19 0.00066 47.2 8.5 83 430-525 809-893 (1151)
239 3crm_A TRNA delta(2)-isopenten 55.2 14 0.00046 41.6 6.0 24 410-433 7-30 (323)
240 3cf2_A TER ATPase, transitiona 54.9 16 0.00054 46.1 7.1 19 409-427 239-257 (806)
241 1rj9_A FTSY, signal recognitio 54.9 73 0.0025 35.1 11.9 33 408-440 102-137 (304)
242 3cmw_A Protein RECA, recombina 53.6 28 0.00094 47.4 9.4 97 400-527 369-474 (1706)
243 1um8_A ATP-dependent CLP prote 52.7 33 0.0011 38.5 8.9 22 408-429 72-93 (376)
244 3a8t_A Adenylate isopentenyltr 52.7 7.1 0.00024 44.1 3.2 19 409-427 41-59 (339)
245 2bjv_A PSP operon transcriptio 52.3 14 0.00049 39.2 5.4 22 407-428 28-49 (265)
246 2v6i_A RNA helicase; membrane, 51.6 17 0.00056 42.2 6.2 55 433-493 171-225 (431)
247 1p9r_A General secretion pathw 51.5 14 0.00046 43.0 5.4 31 394-424 151-183 (418)
248 2qgz_A Helicase loader, putati 50.8 15 0.00051 40.6 5.4 18 408-425 152-169 (308)
249 4gl2_A Interferon-induced heli 50.2 13 0.00046 45.4 5.4 59 433-493 400-472 (699)
250 2qz4_A Paraplegin; AAA+, SPG7, 50.2 11 0.00039 39.6 4.2 20 408-427 39-58 (262)
251 3cf0_A Transitional endoplasmi 49.2 12 0.00041 41.0 4.3 23 408-430 49-71 (301)
252 4ag6_A VIRB4 ATPase, type IV s 48.6 12 0.00042 42.5 4.4 39 407-445 34-75 (392)
253 3mwy_W Chromo domain-containin 48.5 1.3E+02 0.0043 37.7 14.0 64 433-496 572-635 (800)
254 3cf2_A TER ATPase, transitiona 48.5 13 0.00045 46.8 4.9 22 409-430 512-533 (806)
255 2og2_A Putative signal recogni 48.3 1E+02 0.0036 34.8 12.0 53 408-460 157-215 (359)
256 2p5t_B PEZT; postsegregational 48.2 47 0.0016 35.2 8.7 20 410-429 34-53 (253)
257 1gvn_B Zeta; postsegregational 48.2 52 0.0018 35.8 9.2 32 410-441 35-66 (287)
258 1ofh_A ATP-dependent HSL prote 48.0 12 0.00042 40.3 4.1 20 408-427 50-69 (310)
259 1gm5_A RECG; helicase, replica 47.4 23 0.00077 44.5 6.8 53 620-672 443-496 (780)
260 3foz_A TRNA delta(2)-isopenten 47.2 10 0.00034 42.5 3.2 16 411-426 13-28 (316)
261 1lv7_A FTSH; alpha/beta domain 47.1 13 0.00044 39.4 4.0 20 408-427 45-64 (257)
262 3b9p_A CG5977-PA, isoform A; A 47.0 14 0.00048 39.9 4.4 21 408-428 54-74 (297)
263 1yks_A Genome polyprotein [con 46.8 12 0.0004 43.6 4.0 56 433-494 177-232 (440)
264 1kgd_A CASK, peripheral plasma 46.5 9.4 0.00032 38.4 2.7 20 407-426 4-23 (180)
265 3nbx_X ATPase RAVA; AAA+ ATPas 46.4 12 0.0004 44.6 3.9 31 399-429 32-62 (500)
266 3b9q_A Chloroplast SRP recepto 46.3 1.1E+02 0.0038 33.5 11.6 47 408-454 100-151 (302)
267 3exa_A TRNA delta(2)-isopenten 46.3 10 0.00036 42.5 3.2 17 410-426 5-21 (322)
268 3trf_A Shikimate kinase, SK; a 45.5 11 0.00037 37.7 2.9 20 408-427 5-24 (185)
269 1qhx_A CPT, protein (chloramph 45.2 16 0.00055 36.0 4.1 22 408-429 3-24 (178)
270 2gza_A Type IV secretion syste 45.1 12 0.00039 42.6 3.4 21 405-425 172-192 (361)
271 3vaa_A Shikimate kinase, SK; s 44.9 11 0.00038 38.4 3.0 22 407-428 24-45 (199)
272 1u0j_A DNA replication protein 44.2 20 0.00067 39.2 4.9 36 392-427 82-123 (267)
273 2ze6_A Isopentenyl transferase 43.7 13 0.00043 39.9 3.3 16 410-425 3-18 (253)
274 3nwn_A Kinesin-like protein KI 43.5 14 0.00047 42.1 3.7 25 400-424 95-121 (359)
275 1bg2_A Kinesin; motor protein, 43.5 15 0.00051 41.3 3.9 26 400-425 68-95 (325)
276 2oca_A DAR protein, ATP-depend 42.6 56 0.0019 38.1 9.0 80 433-524 347-426 (510)
277 3lw7_A Adenylate kinase relate 42.4 10 0.00035 36.8 2.2 18 410-427 3-20 (179)
278 2l82_A Designed protein OR32; 42.3 2.2E+02 0.0074 26.6 11.9 127 436-650 5-131 (162)
279 1xx6_A Thymidine kinase; NESG, 42.3 17 0.00056 37.6 3.8 36 408-443 8-46 (191)
280 3t15_A Ribulose bisphosphate c 42.2 12 0.00042 40.9 3.0 19 409-427 37-55 (293)
281 4b4t_M 26S protease regulatory 42.0 15 0.00053 42.8 3.9 20 408-427 215-234 (434)
282 3tau_A Guanylate kinase, GMP k 41.8 13 0.00045 38.2 3.0 19 408-426 8-26 (208)
283 2v3c_C SRP54, signal recogniti 41.7 29 0.00098 40.5 6.1 32 409-440 100-134 (432)
284 2qp9_X Vacuolar protein sortin 41.5 17 0.00059 40.9 4.1 21 409-429 85-105 (355)
285 3pfi_A Holliday junction ATP-d 41.5 19 0.00066 39.6 4.5 19 409-427 56-74 (338)
286 3dc4_A Kinesin-like protein NO 41.3 15 0.0005 41.7 3.4 24 401-424 86-111 (344)
287 2eyu_A Twitching motility prot 41.3 11 0.00039 40.6 2.5 19 407-425 24-42 (261)
288 2kp7_A Crossover junction endo 41.1 1E+02 0.0035 27.7 8.3 67 952-1027 17-86 (87)
289 1c9k_A COBU, adenosylcobinamid 40.9 18 0.00061 37.1 3.7 34 411-445 2-35 (180)
290 2vvg_A Kinesin-2; motor protei 40.9 17 0.00058 41.2 3.9 25 400-424 80-106 (350)
291 2h58_A Kinesin-like protein KI 40.8 17 0.00059 40.8 3.9 26 400-425 71-98 (330)
292 4b4t_L 26S protease subunit RP 40.8 16 0.00055 42.7 3.8 21 408-428 215-235 (437)
293 2y65_A Kinesin, kinesin heavy 40.8 17 0.00058 41.5 3.9 25 400-424 75-101 (365)
294 3b6u_A Kinesin-like protein KI 40.7 16 0.00056 41.7 3.7 25 400-424 92-118 (372)
295 4a14_A Kinesin, kinesin-like p 40.5 17 0.00059 41.0 3.9 25 400-424 74-100 (344)
296 1ls1_A Signal recognition part 40.5 2E+02 0.0068 31.3 12.4 45 407-451 97-146 (295)
297 2ehv_A Hypothetical protein PH 40.3 21 0.00071 37.1 4.3 35 407-441 29-67 (251)
298 2zfi_A Kinesin-like protein KI 40.1 18 0.0006 41.3 3.9 25 400-424 80-106 (366)
299 2pt7_A CAG-ALFA; ATPase, prote 40.0 14 0.00048 41.4 3.0 20 406-425 169-188 (330)
300 3gbj_A KIF13B protein; kinesin 39.9 17 0.00058 41.3 3.7 26 400-425 83-110 (354)
301 1goj_A Kinesin, kinesin heavy 39.9 16 0.00056 41.4 3.6 24 401-424 72-97 (355)
302 1t5c_A CENP-E protein, centrom 39.5 17 0.0006 41.1 3.7 26 400-425 68-95 (349)
303 1kag_A SKI, shikimate kinase I 39.4 22 0.00075 34.8 4.1 22 408-429 4-25 (173)
304 1lvg_A Guanylate kinase, GMP k 39.3 14 0.00049 37.8 2.7 19 407-425 3-21 (198)
305 3lre_A Kinesin-like protein KI 39.3 17 0.00058 41.3 3.6 24 401-424 97-122 (355)
306 2nr8_A Kinesin-like protein KI 39.2 18 0.00061 41.2 3.7 25 400-424 94-120 (358)
307 3d3q_A TRNA delta(2)-isopenten 39.0 16 0.00054 41.3 3.2 17 410-426 9-25 (340)
308 2wv9_A Flavivirin protease NS2 38.6 25 0.00086 43.3 5.2 56 432-493 409-464 (673)
309 3rc3_A ATP-dependent RNA helic 38.5 58 0.002 40.2 8.4 60 435-494 322-381 (677)
310 1x88_A Kinesin-like protein KI 38.5 18 0.0006 41.2 3.5 26 400-425 79-106 (359)
311 2qmh_A HPR kinase/phosphorylas 38.4 12 0.00042 39.2 2.1 18 408-425 34-51 (205)
312 3ice_A Transcription terminati 38.4 91 0.0031 36.0 9.3 31 396-426 159-192 (422)
313 3uk6_A RUVB-like 2; hexameric 38.2 14 0.00049 41.1 2.7 21 409-429 71-91 (368)
314 4b4t_K 26S protease regulatory 38.2 20 0.00067 41.8 4.0 20 408-427 206-225 (428)
315 2heh_A KIF2C protein; kinesin, 38.1 19 0.00064 41.4 3.7 25 400-424 125-151 (387)
316 1v8k_A Kinesin-like protein KI 38.0 20 0.00067 41.6 3.9 26 400-425 145-172 (410)
317 3iij_A Coilin-interacting nucl 37.8 18 0.00063 35.9 3.2 21 407-427 10-30 (180)
318 2j41_A Guanylate kinase; GMP, 37.7 14 0.00049 37.3 2.4 20 407-426 5-24 (207)
319 1zp6_A Hypothetical protein AT 37.5 20 0.00069 35.7 3.5 20 407-426 8-27 (191)
320 2va8_A SSO2462, SKI2-type heli 37.5 84 0.0029 38.6 9.8 62 431-494 250-347 (715)
321 3u06_A Protein claret segregat 37.5 18 0.00063 41.9 3.5 26 400-425 129-156 (412)
322 3fmp_B ATP-dependent RNA helic 37.2 7.1 0.00024 45.5 0.0 59 433-493 333-391 (479)
323 2wbe_C Bipolar kinesin KRP-130 37.2 18 0.00063 41.3 3.4 25 400-424 91-117 (373)
324 4etp_A Kinesin-like protein KA 37.2 21 0.00073 41.2 4.0 26 400-425 131-158 (403)
325 3cob_A Kinesin heavy chain-lik 37.2 17 0.00059 41.5 3.2 24 401-424 71-96 (369)
326 1ojl_A Transcriptional regulat 36.9 19 0.00066 39.6 3.5 21 407-427 24-44 (304)
327 3tr0_A Guanylate kinase, GMP k 36.7 18 0.00061 36.5 3.0 19 407-425 6-24 (205)
328 1fuu_A Yeast initiation factor 36.3 7.5 0.00026 43.4 0.0 59 433-493 259-317 (394)
329 3dmq_A RNA polymerase-associat 36.2 39 0.0013 43.5 6.6 64 432-496 502-566 (968)
330 3a4m_A L-seryl-tRNA(SEC) kinas 36.2 1.2E+02 0.0042 32.1 9.7 19 409-427 5-23 (260)
331 1hqc_A RUVB; extended AAA-ATPa 36.2 18 0.00062 39.4 3.1 19 408-426 38-56 (324)
332 1ixz_A ATP-dependent metallopr 36.0 26 0.00088 36.9 4.2 19 409-427 50-68 (254)
333 2owm_A Nckin3-434, related to 35.9 22 0.00075 41.6 3.9 26 400-425 127-154 (443)
334 1y63_A LMAJ004144AAA protein; 35.8 19 0.00066 36.1 3.0 22 407-428 9-30 (184)
335 1tf7_A KAIC; homohexamer, hexa 35.4 1E+02 0.0034 36.6 9.6 38 407-444 280-320 (525)
336 3ney_A 55 kDa erythrocyte memb 34.7 18 0.00063 37.5 2.7 19 407-425 18-36 (197)
337 2qor_A Guanylate kinase; phosp 34.6 21 0.00073 36.4 3.2 19 407-425 11-29 (204)
338 3zvl_A Bifunctional polynucleo 34.6 1.2E+02 0.0041 34.8 9.9 18 410-427 260-277 (416)
339 3kb2_A SPBC2 prophage-derived 34.4 19 0.00065 35.0 2.7 17 410-426 3-19 (173)
340 1kht_A Adenylate kinase; phosp 34.4 20 0.00069 35.5 2.9 19 408-426 3-21 (192)
341 4fcw_A Chaperone protein CLPB; 34.3 22 0.00074 38.5 3.3 17 410-426 49-65 (311)
342 1ly1_A Polynucleotide kinase; 34.3 17 0.00057 35.8 2.2 18 410-427 4-21 (181)
343 3bfn_A Kinesin-like protein KI 34.3 18 0.00063 41.5 2.8 23 403-425 92-116 (388)
344 2v9p_A Replication protein E1; 34.3 18 0.0006 40.3 2.6 34 407-441 125-159 (305)
345 1sky_E F1-ATPase, F1-ATP synth 34.0 1.5E+02 0.005 35.0 10.4 25 401-425 141-168 (473)
346 3a00_A Guanylate kinase, GMP k 34.0 22 0.00074 35.8 3.1 17 409-425 2-18 (186)
347 3eph_A TRNA isopentenyltransfe 33.9 17 0.00059 42.0 2.5 15 411-425 5-19 (409)
348 3t0q_A AGR253WP; kinesin, alph 33.8 20 0.00069 40.5 3.1 26 400-425 76-103 (349)
349 2jlq_A Serine protease subunit 33.6 39 0.0013 39.2 5.5 55 433-493 188-242 (451)
350 4b4t_I 26S protease regulatory 33.6 26 0.00091 40.8 4.0 21 408-428 216-236 (437)
351 2bdt_A BH3686; alpha-beta prot 33.5 29 0.00099 34.7 3.9 20 409-428 3-22 (189)
352 3nwj_A ATSK2; P loop, shikimat 33.4 24 0.00083 37.9 3.5 24 406-429 46-69 (250)
353 3hu3_A Transitional endoplasmi 33.2 29 0.00098 41.1 4.3 23 408-430 238-260 (489)
354 2ewv_A Twitching motility prot 32.8 18 0.00062 41.2 2.4 18 407-424 135-152 (372)
355 1xjc_A MOBB protein homolog; s 32.8 44 0.0015 33.8 5.1 35 410-465 6-40 (169)
356 1z6g_A Guanylate kinase; struc 32.6 24 0.00083 36.6 3.2 20 406-425 21-40 (218)
357 1iy2_A ATP-dependent metallopr 32.2 32 0.0011 36.9 4.2 19 409-427 74-92 (278)
358 2whx_A Serine protease/ntpase/ 32.1 49 0.0017 40.3 6.3 56 432-493 354-409 (618)
359 3jvv_A Twitching mobility prot 32.1 19 0.00065 40.8 2.4 18 407-424 122-139 (356)
360 1f9v_A Kinesin-like protein KA 31.9 21 0.00071 40.5 2.7 25 401-425 76-102 (347)
361 3kta_A Chromosome segregation 31.8 25 0.00085 34.9 3.0 18 410-427 28-45 (182)
362 4eun_A Thermoresistant glucoki 31.8 24 0.00083 35.8 3.0 20 407-426 28-47 (200)
363 3fho_A ATP-dependent RNA helic 31.4 11 0.00038 44.5 0.4 60 432-493 356-415 (508)
364 1f2t_A RAD50 ABC-ATPase; DNA d 31.0 21 0.0007 35.0 2.2 16 410-425 25-40 (149)
365 2c9o_A RUVB-like 1; hexameric 31.0 22 0.00077 41.4 2.9 19 408-426 63-81 (456)
366 2x8a_A Nuclear valosin-contain 30.7 35 0.0012 36.9 4.2 18 409-426 45-62 (274)
367 2rep_A Kinesin-like protein KI 30.4 21 0.00072 40.8 2.5 24 401-424 107-132 (376)
368 1knq_A Gluconate kinase; ALFA/ 30.3 23 0.00078 34.9 2.4 20 408-427 8-27 (175)
369 1ex7_A Guanylate kinase; subst 30.3 24 0.00081 36.3 2.6 16 409-424 2-17 (186)
370 2z0m_A 337AA long hypothetical 30.2 53 0.0018 35.4 5.6 56 432-493 219-274 (337)
371 2duy_A Competence protein come 30.0 43 0.0015 28.8 3.8 20 992-1011 50-69 (75)
372 1g41_A Heat shock protein HSLU 29.9 37 0.0013 39.7 4.5 20 408-427 50-69 (444)
373 2j9r_A Thymidine kinase; TK1, 29.9 36 0.0012 35.8 4.0 35 410-444 30-67 (214)
374 1znw_A Guanylate kinase, GMP k 29.9 27 0.00094 35.7 3.0 22 404-425 16-37 (207)
375 4gp7_A Metallophosphoesterase; 29.6 20 0.0007 35.6 1.9 21 407-427 8-28 (171)
376 2zj8_A DNA helicase, putative 29.6 89 0.0031 38.4 8.2 62 431-494 235-329 (720)
377 3uie_A Adenylyl-sulfate kinase 29.2 25 0.00084 35.8 2.5 20 407-426 24-43 (200)
378 1g8p_A Magnesium-chelatase 38 29.2 29 0.001 38.1 3.3 20 408-427 45-64 (350)
379 3cm0_A Adenylate kinase; ATP-b 29.2 21 0.00072 35.4 2.0 20 408-427 4-23 (186)
380 2p6r_A Afuhel308 helicase; pro 29.1 92 0.0032 38.1 8.1 62 431-494 240-331 (702)
381 3t61_A Gluconokinase; PSI-biol 29.1 26 0.00089 35.5 2.7 18 409-426 19-36 (202)
382 2vhj_A Ntpase P4, P4; non- hyd 28.8 29 0.001 39.0 3.2 35 407-441 122-156 (331)
383 1zuh_A Shikimate kinase; alpha 28.3 34 0.0012 33.4 3.3 21 409-429 8-28 (168)
384 1via_A Shikimate kinase; struc 28.0 30 0.001 34.1 2.9 20 410-429 6-25 (175)
385 2qt1_A Nicotinamide riboside k 28.0 38 0.0013 34.4 3.7 20 408-427 21-40 (207)
386 3qf7_A RAD50; ABC-ATPase, ATPa 28.0 23 0.00078 40.1 2.2 16 410-425 25-40 (365)
387 2r62_A Cell division protease 28.0 16 0.00054 38.8 0.8 19 408-426 44-62 (268)
388 3dl0_A Adenylate kinase; phosp 27.8 38 0.0013 34.5 3.7 18 410-427 2-19 (216)
389 1tev_A UMP-CMP kinase; ploop, 27.8 26 0.0009 34.7 2.4 19 408-426 3-21 (196)
390 3k1j_A LON protease, ATP-depen 27.3 42 0.0015 40.6 4.5 27 403-429 55-81 (604)
391 3fb4_A Adenylate kinase; psych 27.2 35 0.0012 34.8 3.3 18 410-427 2-19 (216)
392 1in4_A RUVB, holliday junction 27.1 30 0.001 38.4 3.0 19 409-427 52-70 (334)
393 1z5z_A Helicase of the SNF2/RA 26.9 1.8E+02 0.006 31.3 9.0 80 416-496 92-175 (271)
394 3lnc_A Guanylate kinase, GMP k 26.8 24 0.00084 36.6 2.0 19 407-425 26-44 (231)
395 3auy_A DNA double-strand break 26.8 24 0.00081 40.0 2.0 16 410-425 27-42 (371)
396 2rhm_A Putative kinase; P-loop 26.8 25 0.00086 35.0 2.0 19 408-426 5-23 (193)
397 1cke_A CK, MSSA, protein (cyti 26.2 31 0.0011 35.3 2.7 19 409-427 6-24 (227)
398 1zd8_A GTP:AMP phosphotransfer 26.1 42 0.0014 34.7 3.7 19 408-426 7-25 (227)
399 2bwj_A Adenylate kinase 5; pho 26.1 33 0.0011 34.3 2.8 20 407-426 11-30 (199)
400 4akg_A Glutathione S-transfera 26.0 34 0.0012 48.7 3.7 49 379-429 892-944 (2695)
401 1pzn_A RAD51, DNA repair and r 26.0 40 0.0014 37.9 3.8 35 408-442 131-174 (349)
402 3dr5_A Putative O-methyltransf 25.8 5.5E+02 0.019 26.2 15.6 127 389-525 32-166 (221)
403 1u9l_A Transcription elongatio 25.5 78 0.0027 27.3 4.6 36 982-1024 29-64 (70)
404 3pxg_A Negative regulator of g 25.5 41 0.0014 39.4 3.8 19 408-426 201-219 (468)
405 2xau_A PRE-mRNA-splicing facto 25.4 42 0.0014 42.1 4.1 62 432-493 302-377 (773)
406 2c95_A Adenylate kinase 1; tra 25.4 35 0.0012 34.0 2.8 21 407-427 8-28 (196)
407 2iyv_A Shikimate kinase, SK; t 25.2 39 0.0013 33.5 3.1 19 409-427 3-21 (184)
408 1e6c_A Shikimate kinase; phosp 24.9 36 0.0012 33.2 2.7 20 409-428 3-22 (173)
409 2ce7_A Cell division protein F 24.9 42 0.0014 39.6 3.8 19 409-427 50-68 (476)
410 3m6a_A ATP-dependent protease 24.9 44 0.0015 39.9 4.0 21 407-427 107-127 (543)
411 1qf9_A UMP/CMP kinase, protein 24.7 34 0.0012 33.8 2.5 18 410-427 8-25 (194)
412 3arc_U Photosystem II 12 kDa e 24.7 54 0.0018 30.2 3.6 27 984-1010 40-67 (97)
413 1np6_A Molybdopterin-guanine d 24.7 67 0.0023 32.4 4.8 15 410-424 8-22 (174)
414 3f9v_A Minichromosome maintena 24.6 27 0.00093 42.4 2.1 19 410-428 329-347 (595)
415 4akg_A Glutathione S-transfera 24.5 56 0.0019 46.6 5.4 25 401-425 1259-1284(2695)
416 3p32_A Probable GTPase RV1496/ 24.2 1.1E+02 0.0039 34.0 7.1 16 410-425 81-96 (355)
417 3o8b_A HCV NS3 protease/helica 24.2 53 0.0018 40.4 4.5 53 432-493 395-447 (666)
418 1nks_A Adenylate kinase; therm 24.2 35 0.0012 33.7 2.5 17 410-426 3-19 (194)
419 1tue_A Replication protein E1; 24.1 30 0.001 36.4 2.1 28 399-426 45-76 (212)
420 1ypw_A Transitional endoplasmi 24.0 43 0.0015 42.2 3.8 22 408-429 238-259 (806)
421 4fn4_A Short chain dehydrogena 24.0 2.6E+02 0.0088 29.8 9.5 87 406-494 5-93 (254)
422 1s96_A Guanylate kinase, GMP k 23.6 41 0.0014 35.2 3.0 20 406-425 14-33 (219)
423 2z83_A Helicase/nucleoside tri 23.6 30 0.001 40.3 2.2 55 433-493 190-244 (459)
424 1sxj_C Activator 1 40 kDa subu 23.5 59 0.002 35.9 4.5 17 411-427 49-65 (340)
425 1zak_A Adenylate kinase; ATP:A 23.2 42 0.0014 34.5 3.0 19 408-426 5-23 (222)
426 4dzz_A Plasmid partitioning pr 23.2 1.3E+02 0.0045 29.8 6.8 12 415-426 9-20 (206)
427 1aky_A Adenylate kinase; ATP:A 23.2 43 0.0015 34.4 3.0 19 408-426 4-22 (220)
428 1ry6_A Internal kinesin; kines 23.2 47 0.0016 37.7 3.6 24 402-425 76-102 (360)
429 1ukz_A Uridylate kinase; trans 23.1 53 0.0018 33.0 3.7 16 410-425 17-32 (203)
430 1z3i_X Similar to RAD54-like; 23.0 2E+02 0.0067 35.0 9.4 81 416-496 395-479 (644)
431 2v54_A DTMP kinase, thymidylat 23.0 44 0.0015 33.5 3.0 19 408-426 4-22 (204)
432 4h1g_A Maltose binding protein 22.8 46 0.0016 41.2 3.7 25 400-424 453-479 (715)
433 2cdn_A Adenylate kinase; phosp 22.6 41 0.0014 33.9 2.7 19 409-427 21-39 (201)
434 3c8u_A Fructokinase; YP_612366 22.5 36 0.0012 34.8 2.3 18 408-425 22-39 (208)
435 2ius_A DNA translocase FTSK; n 22.4 40 0.0014 40.2 2.9 19 407-425 166-184 (512)
436 4g81_D Putative hexonate dehyd 22.4 2.5E+02 0.0087 29.9 9.1 87 406-495 7-96 (255)
437 2dhr_A FTSH; AAA+ protein, hex 22.4 56 0.0019 38.7 4.2 20 409-428 65-84 (499)
438 2pez_A Bifunctional 3'-phospho 22.4 37 0.0013 33.5 2.3 20 407-426 4-23 (179)
439 3asz_A Uridine kinase; cytidin 22.3 35 0.0012 34.6 2.1 19 408-426 6-24 (211)
440 2fna_A Conserved hypothetical 22.2 83 0.0028 34.1 5.3 21 848-868 320-340 (357)
441 2jaq_A Deoxyguanosine kinase; 22.1 42 0.0014 33.5 2.7 17 410-426 2-18 (205)
442 1m7g_A Adenylylsulfate kinase; 22.1 42 0.0014 34.3 2.7 31 395-426 13-43 (211)
443 3qks_A DNA double-strand break 21.9 37 0.0013 34.9 2.2 16 410-425 25-40 (203)
444 1ak2_A Adenylate kinase isoenz 21.9 47 0.0016 34.6 3.0 20 408-427 16-35 (233)
445 4e22_A Cytidylate kinase; P-lo 21.8 45 0.0016 35.4 3.0 21 407-427 26-46 (252)
446 2if2_A Dephospho-COA kinase; a 21.7 41 0.0014 33.9 2.5 18 410-427 3-20 (204)
447 1r6b_X CLPA protein; AAA+, N-t 21.7 76 0.0026 39.3 5.4 18 410-427 490-507 (758)
448 2pt5_A Shikimate kinase, SK; a 21.6 42 0.0014 32.6 2.5 18 410-427 2-19 (168)
449 3qkt_A DNA double-strand break 21.5 36 0.0012 37.9 2.2 15 411-425 26-40 (339)
450 1uf9_A TT1252 protein; P-loop, 21.4 42 0.0014 33.6 2.5 18 410-427 10-27 (203)
451 2yvu_A Probable adenylyl-sulfa 21.4 43 0.0015 33.3 2.5 19 408-426 13-31 (186)
452 2vli_A Antibiotic resistance p 21.4 54 0.0019 32.2 3.3 21 408-428 5-25 (183)
453 1jjv_A Dephospho-COA kinase; P 21.2 45 0.0015 33.7 2.7 18 410-427 4-21 (206)
454 3pxi_A Negative regulator of g 21.1 58 0.002 40.4 4.2 19 408-426 201-219 (758)
455 3sr0_A Adenylate kinase; phosp 21.0 46 0.0016 34.5 2.7 16 410-425 2-17 (206)
456 1ye8_A Protein THEP1, hypothet 21.0 47 0.0016 33.5 2.7 16 410-425 2-17 (178)
457 1x2i_A HEF helicase/nuclease; 20.7 67 0.0023 27.1 3.3 19 993-1011 44-62 (75)
458 2bbw_A Adenylate kinase 4, AK4 20.3 48 0.0016 34.8 2.7 18 408-425 27-44 (246)
459 1rz3_A Hypothetical protein rb 20.2 64 0.0022 32.7 3.6 16 410-425 24-39 (201)
460 3oiy_A Reverse gyrase helicase 20.1 1.1E+02 0.0038 34.3 6.0 52 433-492 252-304 (414)
461 3vkg_A Dynein heavy chain, cyt 20.1 53 0.0018 47.4 3.8 48 379-428 875-926 (3245)
462 2pbr_A DTMP kinase, thymidylat 20.1 46 0.0016 32.9 2.5 16 411-426 3-18 (195)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.7e-79 Score=744.10 Aligned_cols=511 Identities=40% Similarity=0.710 Sum_probs=444.8
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhH
Q 001155 367 DQKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLI 446 (1136)
Q Consensus 367 ~~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~ 446 (1136)
...|....++|++.+.+.|+++|||..|||+|.++|+.++.|+|+|++||||+|||+||++|++...+++|||+|+++||
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~ 97 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLM 97 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHH
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHH
Confidence 47899889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 447 QDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 447 ~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
.||+..|.+.|+++..++|+....+....+..+....+.++|+|+|||+|..+..+...+........+++||||||||+
T Consensus 98 ~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~i 177 (591)
T 2v1x_A 98 EDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCC 177 (591)
T ss_dssp HHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGG
T ss_pred HHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccc
Confidence 99999999999999999999998887777766643346899999999999754456665655555667999999999999
Q ss_pred cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhh-----------hHHHH
Q 001155 527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWM-----------DCEKV 595 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~-----------~~e~l 595 (1136)
++|||+||+.|..|..+...+|++|+++||||+++.+..++...|++..+..+..++.++|+.. ....+
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l 257 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDI 257 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998862 12334
Q ss_pred HHHHHh------cc-cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCcc
Q 001155 596 AERLQV------GL-SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVR 668 (1136)
Q Consensus 596 ae~L~~------~l-~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~ 668 (1136)
.+.+.. .+ ..........+...+...|+.+..|||+|+..+|..+++.|.+|+++|||||++|+||||+|+|+
T Consensus 258 ~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~ 337 (591)
T 2v1x_A 258 VKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVR 337 (591)
T ss_dssp HHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEE
T ss_pred HHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCccccc
Confidence 444432 12 22233456677777888899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHH
Q 001155 669 FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLL 748 (1136)
Q Consensus 669 ~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~ 748 (1136)
+||||++|+|++.|+||+|||||+|.+|.|++||++.|...+..++.... ...+++.
T Consensus 338 ~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~-----------------------~~~~~l~ 394 (591)
T 2v1x_A 338 FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN-----------------------VGQQKLY 394 (591)
T ss_dssp EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTST-----------------------THHHHHH
T ss_pred EEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhh-----------------------hhHHHHH
Confidence 99999999999999999999999999999999999999999998875310 1245688
Q ss_pred HHHHHHHhcHHHHHHHHHhhhCCCCCCccccCCCCCCCCCCcccccchhHHHHHHHHHHHH---hCCCCChhhhhHhhhc
Q 001155 749 RMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKL---TGQQFSSSHILEVFRG 825 (1136)
Q Consensus 749 ~mv~yc~~~~~CRR~~ll~yFge~~~~~~C~~~CDnC~~~~~~~~~d~t~~a~~~l~~v~~---~~~~~~~~~~~~~lrG 825 (1136)
.|+.||++...|||..+++||||.++...|+++||||.........|+|.+|++++++|.+ .+++||..+++|+|+|
T Consensus 395 ~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~~~Cd~C~~~~~~~~~d~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~g 474 (591)
T 2v1x_A 395 EMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPLKLIDSWMG 474 (591)
T ss_dssp HHHHHHTCSSSCHHHHHHHHHTCCC---CCCSCBHHHHCCCCEEEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred HHHHHHhcccccHHHHHHHHcCCCCCccccCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHhcCCcccHHHHHHHHhC
Confidence 9999999778999999999999998777898899999988766678999999999999987 7999999999999999
Q ss_pred cchhHHhhcccccccccCCcccCCHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEecc
Q 001155 826 SLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFP 905 (1136)
Q Consensus 826 s~~~~v~~~~~~~~~~~G~gk~~s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p 905 (1136)
++++++..++++ |+++++.+|++|+++|+.+|||.++... +.|+. ..+|++++ +++.++.|..+|.|++|
T Consensus 475 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 544 (591)
T 2v1x_A 475 KGAAKLRVAGVV-------APTLPREDLEKIIAHFLIQQYLKEDYSF-TAYAT-ISYLKIGP-KANLLNNEAHAITMQVT 544 (591)
T ss_dssp CSCGGGCCTTCC-------CCSCCHHHHHHHHHHHHHTTSEEEEEEE-CSSCE-EEEEEECG-GGGGGGSTTCCCEEEEE
T ss_pred CCchHHHhcCCC-------cCcCCHHHHHHHHHHHHHcCCcEEeccc-CCCce-eEEeeECH-HHHHHhcCCceEEEEec
Confidence 999888766665 7999999999999999999999987543 24663 34688885 68899999999999997
Q ss_pred ccccc
Q 001155 906 SAINS 910 (1136)
Q Consensus 906 ~~~k~ 910 (1136)
...+.
T Consensus 545 ~~~~~ 549 (591)
T 2v1x_A 545 KSTQN 549 (591)
T ss_dssp C----
T ss_pred CCCCc
Confidence 65443
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.1e-74 Score=695.89 Aligned_cols=495 Identities=35% Similarity=0.621 Sum_probs=433.8
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L 453 (1136)
.+++.+.+...|++.|||..|+|+|.++|+.++.|+|++++||||+|||+||++|++...+++|||+|+++|+.||+..+
T Consensus 6 ~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l 85 (523)
T 1oyw_A 6 VLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQL 85 (523)
T ss_dssp CSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCC
Q 001155 454 LQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDF 533 (1136)
Q Consensus 454 ~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdf 533 (1136)
...|+++..++|+.........+..+.. +.++|+|+|||+|... .+...+ ....+++||||||||+++|||+|
T Consensus 86 ~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tpe~l~~~-~~~~~l----~~~~~~~vViDEaH~i~~~g~~f 158 (523)
T 1oyw_A 86 QANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAPERLMLD-NFLEHL----AHWNPVLLAVDEAHCISQWGHDF 158 (523)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECHHHHTST-THHHHH----TTSCEEEEEESSGGGGCTTSSCC
T ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhCh-HHHHHH----hhCCCCEEEEeCccccCcCCCcc
Confidence 9999999999999888776666555544 5799999999999643 222222 22468999999999999999999
Q ss_pred ccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-------hhHHHHHHHHHh-----
Q 001155 534 RPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-------MDCEKVAERLQV----- 601 (1136)
Q Consensus 534 R~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-------~~~e~lae~L~~----- 601 (1136)
|+.|..|..+...+|+.|+++||||+++.+..++...+++..+.++..++.++++. .....+.+.+..
T Consensus 159 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~ 238 (523)
T 1oyw_A 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKS 238 (523)
T ss_dssp CHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999988888999999886 223445555542
Q ss_pred ccc-ccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHh
Q 001155 602 GLS-YGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 680 (1136)
Q Consensus 602 ~l~-~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie 680 (1136)
.+. .........+...+...|+.+..|||+|+.++|..+++.|.+|+++|||||++++||||+|+|++||||++|+|++
T Consensus 239 ~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~ 318 (523)
T 1oyw_A 239 GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318 (523)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHH
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHH
Confidence 222 2334456677777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHH
Q 001155 681 GYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDC 760 (1136)
Q Consensus 681 ~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~C 760 (1136)
.|+||+|||||+|.+|.|++||++.|...++.++.+..+ ....+.....+..|++||++ ..|
T Consensus 319 ~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~m~~~~~~-~~c 380 (523)
T 1oyw_A 319 SYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ-----------------GQLQDIERHKLNAMGAFAEA-QTC 380 (523)
T ss_dssp HHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC-----------------SHHHHHHHHHHHHHHHHHTC-SSC
T ss_pred HHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc-----------------HHHHHHHHHHHHHHHHHHhc-ccc
Confidence 999999999999999999999999999999999876211 01123345678999999997 689
Q ss_pred HHHHHHhhhCCCCCCccccCCCCCCCCCCcccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhccccccc
Q 001155 761 RRLLQLVHFGEKFDSAHCKKTCDNCSKIKSFIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLS 840 (1136)
Q Consensus 761 RR~~ll~yFge~~~~~~C~~~CDnC~~~~~~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~ 840 (1136)
||.+|++||||.+. ..|+ +||||..... ..|+|..|+++++++.+.+++|+..+++++|+|+.++++..++|++++
T Consensus 381 rr~~l~~~f~e~~~-~~c~-~cd~c~~~~~--~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 456 (523)
T 1oyw_A 381 RRLVLLNYFGEGRQ-EPCG-NCDICLDPPK--QYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLK 456 (523)
T ss_dssp HHHHHHHHTTCCCC-SCCS-CBHHHHSCCC--EEECHHHHHHHHHHHHHTTTCCCHHHHHHHHHTCCCHHHHHHTGGGST
T ss_pred HhhhhHhhcCCCCC-CCCC-CCCCCCCCcc--cccchHHHHHHHHHHHHhccCcCcchhHHHhcCCCcHhHHhhcccccc
Confidence 99999999999874 5787 7999997654 479999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHHHhcchhhhhhcccCCCceeeEEeeccccccccccCceeEEEecc
Q 001155 841 LHGAGKHLAKSEASRILRHLVIEDFLMEEVKKSDVYGSVSSVLKVNQSKAHNLIIGRQNVVLRFP 905 (1136)
Q Consensus 841 ~~G~gk~~s~~~~~~li~~l~~~g~L~e~~~~~~~~g~~~~~l~l~~~ka~~Ll~G~~~v~l~~p 905 (1136)
+||.|+++++.+|++++++|+..|||.+.. +.|+ +|.+++ ++..+++|..+|.++.|
T Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~----~~~~~~-~~~~~~~~~~~~~~~~~ 513 (523)
T 1oyw_A 457 VYGMGRDKSHEHWVSVIRQLIHLGLVTQNI---AQHS----ALQLTE-AARPVLRGESSLQLAVP 513 (523)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHTTSEEEEG---GGTT----EEEECG-GGHHHHHTSSCCEEECC
T ss_pred cccccCCCCHHHHHHHHHHHHHCCCceecc---CCCC----ceeeCH-HHHHHhcCCceEEEecc
Confidence 999999999999999999999999998753 3455 578875 68899999999999875
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4e-44 Score=423.15 Aligned_cols=320 Identities=20% Similarity=0.253 Sum_probs=254.4
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----------CCcE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----------PGIT 436 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----------~g~~ 436 (1136)
..|.. +.+.+.+.+.+++. ||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. ..++
T Consensus 56 ~~f~~--~~l~~~l~~~l~~~-g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 56 QHFTS--ADLRDIIIDNVNKS-GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCGGG--SCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CChhh--cCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 34553 45668898888875 9999999999999999999999999999999999999999843 4589
Q ss_pred EEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhh
Q 001155 437 LVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAR 512 (1136)
Q Consensus 437 LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~ 512 (1136)
|||+|+++|+.|+.+.+.++ ++++..+.|+.....+...+. .+++|+|+||++|. +.+.+.. ...
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Ivv~Tp~~l~--~~l~~~~---~~l 201 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT------RGCHVVIATPGRLL--DFVDRTF---ITF 201 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT------TCCSEEEECHHHHH--HHHHTTS---CCC
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh------cCCCEEEEChHHHH--HHHHhCC---ccc
Confidence 99999999999999998876 578888999988766554433 37899999999996 4443321 224
Q ss_pred hccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc-CC--CCch-
Q 001155 513 ELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS-FN--RPNL- 588 (1136)
Q Consensus 513 ~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s-~~--r~nl- 588 (1136)
..+++|||||||++.+|| |++.+..+.......+..++++||||+++.+.......+. ++..+... .. ..++
T Consensus 202 ~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~i~ 277 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK--NYVFVAIGIVGGACSDVK 277 (434)
T ss_dssp TTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCS--SCEEEEESSTTCCCTTEE
T ss_pred ccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhcc--CCEEEEeccccccccccc
Confidence 568999999999999998 8888887755544567889999999999987766555443 22222111 10 1111
Q ss_pred --------hhhHHHHHHHHHh-----cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEee
Q 001155 589 --------WMDCEKVAERLQV-----GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655 (1136)
Q Consensus 589 --------~~~~e~lae~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT 655 (1136)
......+.+.+.. +++.........+...+...|+.+..+||+|++.+|..+++.|++|+++|||||
T Consensus 278 ~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 278 QTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 1223344444443 223334445667777788889999999999999999999999999999999999
Q ss_pred ccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccc
Q 001155 656 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 705 (1136)
Q Consensus 656 ~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~ 705 (1136)
+++++|||+|++++||+||+|.++++|+||+||+||.|+.|.|++|+++.
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999854
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.7e-45 Score=489.07 Aligned_cols=426 Identities=19% Similarity=0.215 Sum_probs=310.7
Q ss_pred CCCCccccCCCceecccccccccccccCCCCCcccccccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCcc
Q 001155 298 TPQPAVLKIDPIRFDTQVHLYNESEGYGNWNSSSVSFSSVDRLGVSSYPVEREPFIPKIIKVNYIEGSNDQKWSSWDFPW 377 (1136)
Q Consensus 298 ~p~~~~~~~~~l~f~~~~~l~~~~~~~~p~~s~r~~~~~~e~l~vp~~~~~~~~~~~~~i~i~~~~~~~~~~w~~~~fp~ 377 (1136)
++++..++++.+.|+++.++|++.++.+|.++.+...+.|+++++|++...+......++++..+ +.|....|+
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~L-----p~~~~~~f~- 75 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKL-----PKYAQAGFE- 75 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTS-----CGGGSTTCT-
T ss_pred CCccceecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhc-----CHHHHHhcC-
Confidence 34567788999999999999999999999999999999999999998876654444555554433 556655565
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhC--------------CCcEEEEccC
Q 001155 378 TKKLEANNKKVFGNHSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPL 442 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~--------------~g~~LVIsPt 442 (1136)
||+.||++|+++++.++. ++|+||+||||||||++|.++++.. +.++|||+|+
T Consensus 76 ------------g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 76 ------------GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp ------------TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred ------------CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 999999999999999985 8899999999999999999999732 4579999999
Q ss_pred hhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcccee
Q 001155 443 VSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518 (1136)
Q Consensus 443 raL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lV 518 (1136)
+||++|+++.|.+. |+++..++|+.....+. ...++|+|+|||+| +.+++..........+++|
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---------~~~~~IlVtTpEkl---d~llr~~~~~~~l~~v~~v 211 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---------ISATQIIVCTPEKW---DIITRKGGERTYTQLVRLI 211 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---------GGGCSEEEECHHHH---HHHTTSSTTHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---------cCCCCEEEECHHHH---HHHHcCCccchhhcCcCEE
Confidence 99999999998764 89999999998754322 13789999999999 6776655444455679999
Q ss_pred eeeccccccccCCCCccchhhh------hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcc---eEEecccCCCCchh
Q 001155 519 VIDEAHCVSQWGHDFRPDYQGL------GILKQKFPNTPVLALTATATASVKEDVVQALGLVN---CIIFRQSFNRPNLW 589 (1136)
Q Consensus 519 VIDEAH~ls~wGhdfR~~y~~L------~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~---~~i~~~s~~r~nl~ 589 (1136)
||||+|+|. |.|+....+ ..+....+.+++|+||||+++. +++.++|+... ..+|..++.+..+.
T Consensus 212 IiDEvH~l~----d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~ 285 (1724)
T 4f92_B 212 ILDEIHLLH----DDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLE 285 (1724)
T ss_dssp EETTGGGGG----STTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEE
T ss_pred EEecchhcC----CccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccE
Confidence 999999984 346654331 1122345678999999999986 78999997642 23444443322221
Q ss_pred ------------hhH----HHHHHHHHh------cccccchh-----hHHHHHH--------------------------
Q 001155 590 ------------MDC----EKVAERLQV------GLSYGHFF-----LLKEFYV-------------------------- 616 (1136)
Q Consensus 590 ------------~~~----e~lae~L~~------~l~~~~~~-----~~~~~~~-------------------------- 616 (1136)
... +.+.+.+.. .+.+.+.. ....+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1724)
T 4f92_B 286 QTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEA 365 (1724)
T ss_dssp EECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTT
T ss_pred EEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhh
Confidence 000 111111111 11111100 0000000
Q ss_pred -------HHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE----cC------CCCCH
Q 001155 617 -------VSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS------LPKSI 679 (1136)
Q Consensus 617 -------~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh----~d------~P~Si 679 (1136)
.......++++|||||++++|..+++.|++|.++|||||++|+||||+|++++||+ |+ .|.++
T Consensus 366 ~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~ 445 (1724)
T 4f92_B 366 EQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGA 445 (1724)
T ss_dssp SCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCH
T ss_pred cccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCH
Confidence 00012346899999999999999999999999999999999999999999999995 44 35689
Q ss_pred hHHHHHhcccCCCCC--CcEEEEEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhc
Q 001155 680 EGYHQECGRAGRDGQ--RSSCVLYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCEND 757 (1136)
Q Consensus 680 e~YiQriGRAGR~G~--~g~~il~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~ 757 (1136)
.+|.||+|||||.|. .|.++++++..+...+..++....|.+|.+.+...+... .+++-..+.+..+.++|+..+
T Consensus 446 ~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~---aeI~~g~i~~~~~a~~~l~~T 522 (1724)
T 4f92_B 446 LDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN---AEIVLGNVQNAKDAVNWLGYA 522 (1724)
T ss_dssp HHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHH---HHHHHTSCCBHHHHHHHHHHS
T ss_pred HHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHH---HHHHHhhcCCHHHHHHHHhcc
Confidence 999999999999885 799999999999999999999999999887654321110 111111223345566666655
Q ss_pred HHHHH
Q 001155 758 VDCRR 762 (1136)
Q Consensus 758 ~~CRR 762 (1136)
....|
T Consensus 523 ~~~~r 527 (1724)
T 4f92_B 523 YLYIR 527 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-43 Score=431.65 Aligned_cols=328 Identities=19% Similarity=0.310 Sum_probs=252.4
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHH--CCCcEEEEccCCChHHHHHHhhhhhC----------CCcEEEEccChh
Q 001155 377 WTKKLEANNKKVFGNHSFRPNQREIINATM--SGHDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLVS 444 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il--~g~dvLV~APTGsGKTl~y~LpaL~~----------~g~~LVIsPtra 444 (1136)
+.+.+...+.+. ||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++.. ..++|||+|+++
T Consensus 79 l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRM-EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTT-CCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 567788888665 99999999999999999 67899999999999999999999853 248999999999
Q ss_pred hHHHHHHHHHHc--------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 445 LIQDQIMHLLQA--------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 445 L~~dqv~~L~~~--------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
|+.|++..+.++ ++.+..+.|+.....+...+.. ..++|+|+||++|. +.+.+. .......++
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~Iiv~Tp~~l~--~~l~~~--~~~~~~~~~ 228 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK-----LRPNIVIATPGRLI--DVLEKY--SNKFFRFVD 228 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH-----HCCSEEEECHHHHH--HHHHHH--HHHHCTTCC
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhc-----CCCCEEEECcHHHH--HHHHhc--cccccccce
Confidence 999999998873 3557778888776665544432 37899999999996 444332 122345689
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhc-----cCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh-
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQ-----KFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW- 589 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~-----~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~- 589 (1136)
+|||||||++++|| |++.+..+..... ..+.+++++||||+++.+...+...+.......+.. ....+...
T Consensus 229 ~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (563)
T 3i5x_A 229 YKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 306 (563)
T ss_dssp EEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred EEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccc
Confidence 99999999999999 9999877654432 234778999999999988776655554443333221 11111110
Q ss_pred -----------------hhHHHHHHHHHh------cc-cccchhhHHHHHHHHhhc---CCeEEEEcCCCCHHHHHHHHH
Q 001155 590 -----------------MDCEKVAERLQV------GL-SYGHFFLLKEFYVVSLEC---GHKAAFYHGSIDPAQRAFVQK 642 (1136)
Q Consensus 590 -----------------~~~e~lae~L~~------~l-~~~~~~~~~~~~~~l~~~---g~~v~~~Hagm~~~dR~~i~~ 642 (1136)
...+.+...+.. .+ ..........+...+... ++.+..|||+|+..+|..+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~ 386 (563)
T 3i5x_A 307 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 386 (563)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred cCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Confidence 112222222221 22 222333444555555444 899999999999999999999
Q ss_pred HHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 643 QWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 643 ~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
.|++|+++|||||+++++|||+|++++||+|++|.++.+|+||+|||||.|..|.|++|+.+.|...++.+...
T Consensus 387 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 387 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888653
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-43 Score=434.19 Aligned_cols=328 Identities=19% Similarity=0.302 Sum_probs=253.5
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHH--CCCcEEEEccCCChHHHHHHhhhhhC----------CCcEEEEccChh
Q 001155 377 WTKKLEANNKKVFGNHSFRPNQREIINATM--SGHDVFVLMPTGGGKSLTYQLPALIC----------PGITLVISPLVS 444 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il--~g~dvLV~APTGsGKTl~y~LpaL~~----------~g~~LVIsPtra 444 (1136)
+++.+.+++++. ||..|+|+|.++|+.++ .++|+|++||||+|||++|++|++.. ..++|||+|+++
T Consensus 28 l~~~l~~~l~~~-g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRM-EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTT-TCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHC-CCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 568888888765 99999999999999999 68899999999999999999999843 248999999999
Q ss_pred hHHHHHHHHHHc--------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 445 LIQDQIMHLLQA--------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 445 L~~dqv~~L~~~--------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
|+.|+...+.++ .+.+..+.|+.....+...+.. ..++|+|+||++|. +.+.+.. ......++
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-----~~~~IlV~Tp~~l~--~~l~~~~--~~~~~~~~ 177 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNK-----LRPNIVIATPGRLI--DVLEKYS--NKFFRFVD 177 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHH-----HCCSEEEECHHHHH--HHHHHHH--HHHCTTCC
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhc-----CCCCEEEECHHHHH--HHHHhcc--ccccccCC
Confidence 999999988774 3567778888776665544433 37899999999996 4443321 22345689
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhcc-----CCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh-
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQK-----FPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW- 589 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~-----~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~- 589 (1136)
+|||||||++++|| |++.+..|...... .+.+++++||||+++.+...+...+.......+.. ....+...
T Consensus 178 ~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 178 YKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp EEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred EEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999999 99998876554432 23678999999999988776665555433333221 11111111
Q ss_pred -----------------hhHHHHHHHHHh-------cccccchhhHHHHHHHHhhc---CCeEEEEcCCCCHHHHHHHHH
Q 001155 590 -----------------MDCEKVAERLQV-------GLSYGHFFLLKEFYVVSLEC---GHKAAFYHGSIDPAQRAFVQK 642 (1136)
Q Consensus 590 -----------------~~~e~lae~L~~-------~l~~~~~~~~~~~~~~l~~~---g~~v~~~Hagm~~~dR~~i~~ 642 (1136)
...+.+.+.+.. ++..........++..+... ++.+..|||+|+..+|..+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred ccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 111222222221 12222333445555555544 899999999999999999999
Q ss_pred HHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 643 QWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 643 ~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
.|++|+++|||||+++++|||+|++++||||++|.+++.|+||+|||||.|+.|.|++|+.+.|...++.+...
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887654
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-43 Score=406.24 Aligned_cols=332 Identities=19% Similarity=0.219 Sum_probs=255.1
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---------------
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------------- 432 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------------- 432 (1136)
..|+. +++.+.+.+.+... ||..|+|+|.++++.++.|+|++++||||+|||++|++|++..
T Consensus 15 ~~f~~--~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 15 ESFSD--VEMGEIIMGNIELT-RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp SSGGG--SCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCHhh--CCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 34553 45668999998775 9999999999999999999999999999999999999999843
Q ss_pred ---------CCcEEEEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhch
Q 001155 433 ---------PGITLVISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKS 499 (1136)
Q Consensus 433 ---------~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~ 499 (1136)
.+++|||+|+++|+.|+.+.+.++ ++++..+.|+.....+...+. ..++|+|+||++|.
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~-- 163 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE------RGCHLLVATPGRLV-- 163 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT------TCCSEEEECHHHHH--
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh------CCCCEEEEChHHHH--
Confidence 157999999999999999988775 688899999887766544332 37899999999995
Q ss_pred HHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCC--CCCEEEEeeccchhhHHHHHHHhcCcceE
Q 001155 500 DVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP--NTPVLALTATATASVKEDVVQALGLVNCI 577 (1136)
Q Consensus 500 d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p--~~~iv~LSAT~~~~v~~dI~~~L~l~~~~ 577 (1136)
+.+... ......+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+...+...+.-....
T Consensus 164 ~~l~~~---~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2i4i_A 164 DMMERG---KIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 238 (417)
T ss_dssp HHHHTT---SBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHcC---CcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEE
Confidence 333221 1123458999999999999988 8888877644333322 57799999999998776666655432211
Q ss_pred Eec-ccCCCCchh---------hhHHHHHHHHHh-------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHH
Q 001155 578 IFR-QSFNRPNLW---------MDCEKVAERLQV-------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFV 640 (1136)
Q Consensus 578 i~~-~s~~r~nl~---------~~~e~lae~L~~-------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i 640 (1136)
... .....+++. .....+.+.+.. +++.........++..+...|+.+..+||+|+..+|..+
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 239 AVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp EEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred EeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 111 111111111 222334444432 222333445667777788889999999999999999999
Q ss_pred HHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 641 QKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 641 ~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
++.|++|+++|||||+++++|||+|++++||+|++|.|+..|+||+||+||.|+.|.|++|++..|...+..+++
T Consensus 319 ~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 319 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp HHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred HHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998766665543
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-41 Score=395.28 Aligned_cols=327 Identities=18% Similarity=0.260 Sum_probs=252.2
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|+ ++++.+.+.+.+.+. ||..|+|+|.++++.++.|+|++++||||+|||++|++|++.. ..++|||+|
T Consensus 37 ~~f~--~~~l~~~l~~~l~~~-g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 37 PTFD--TMGLREDLLRGIYAY-GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CSGG--GGCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCHh--hcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 3455 345668898888765 9999999999999999999999999999999999999999853 578999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+.|+.+.+.++ ++.+..+.|+.....+...+.. ..+|+|+||++|. +.+.+. ......+++
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~ivv~Tp~~l~--~~l~~~---~~~~~~~~~ 182 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY------GQHVVAGTPGRVF--DMIRRR---SLRTRAIKM 182 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH------CCSEEEECHHHHH--HHHHTT---SSCCTTCCE
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc------CCCEEEcCHHHHH--HHHHhC---CccHhheeE
Confidence 999999999998876 5788888888887666554443 6799999999985 333321 122345899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc---cCCCCchh-----
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ---SFNRPNLW----- 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~---s~~r~nl~----- 589 (1136)
|||||||++.+|+ |+..+..+ +....+..+++++|||++..+...+...+. .+..+.. .....++.
T Consensus 183 vViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 256 (410)
T 2j0s_A 183 LVLDEADEMLNKG--FKEQIYDV--YRYLPPATQVVLISATLPHEILEMTNKFMT--DPIRILVKRDELTLEGIKQFFVA 256 (410)
T ss_dssp EEEETHHHHTSTT--THHHHHHH--HTTSCTTCEEEEEESCCCHHHHTTGGGTCS--SCEEECCCGGGCSCTTEEEEEEE
T ss_pred EEEccHHHHHhhh--hHHHHHHH--HHhCccCceEEEEEcCCCHHHHHHHHHHcC--CCEEEEecCccccCCCceEEEEE
Confidence 9999999999887 66555443 222235788999999999876543333322 2221111 11111111
Q ss_pred -----hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccc
Q 001155 590 -----MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAF 658 (1136)
Q Consensus 590 -----~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~al 658 (1136)
.....+.+.+.. +++.........+...+...|+.+..+||+|+..+|..+++.|++|+++|||||+++
T Consensus 257 ~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 336 (410)
T 2j0s_A 257 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 336 (410)
T ss_dssp ESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGG
T ss_pred eCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 122333333322 233334445667777788889999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHH
Q 001155 659 GMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMI 714 (1136)
Q Consensus 659 g~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li 714 (1136)
++|||+|++++||+|++|.++..|+||+||+||.|++|.|++|++..|...+..+.
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~ 392 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 392 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHH
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987776654
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.3e-42 Score=399.03 Aligned_cols=327 Identities=19% Similarity=0.248 Sum_probs=238.4
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh------CCCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~------~~g~~LVIsPtraL~~ 447 (1136)
.+++++.+.+.+++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++. ..+++|||+|+++|+.
T Consensus 44 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 122 (414)
T 3eiq_A 44 DMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQ 122 (414)
T ss_dssp GGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred hCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHH
Confidence 45667888888887 5999999999999999999999999999999999999999985 3568999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
|+.+.+.++ ++.+..+.|+.....+...+.. ..++|+|+||++|. +.+.+.. .....+++||||||
T Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iiv~T~~~l~--~~l~~~~---~~~~~~~~vViDEa 192 (414)
T 3eiq_A 123 QIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM-----EAPHIIVGTPGRVF--DMLNRRY---LSPKYIKMFVLDEA 192 (414)
T ss_dssp HHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTT-----TCCSEEEECHHHHH--HHHHHTS---SCSTTCCEEEECSH
T ss_pred HHHHHHHHHhcccCceEEEEECCcchHHHHHHHhc-----CCCCEEEECHHHHH--HHHHcCC---cccccCcEEEEECH
Confidence 999998876 6778888888776655433321 47899999999986 4443321 12345899999999
Q ss_pred ccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh----------hhH
Q 001155 524 HCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW----------MDC 592 (1136)
Q Consensus 524 H~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~----------~~~ 592 (1136)
|++.+|+ |...+..+ +....++.++++||||++..+...+...+.-........ ......+. ...
T Consensus 193 h~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 193 DEMLSRG--FKDQIYDI--FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp HHHHHTT--THHHHHHH--HTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred HHhhccC--cHHHHHHH--HHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 9999887 55554433 233345788999999999887665544433221111111 11111111 123
Q ss_pred HHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC
Q 001155 593 EKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 666 (1136)
Q Consensus 593 e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~ 666 (1136)
..+.+.+.. +++.........++..+...++.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|+
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 348 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 348 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGG
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccC
Confidence 344444432 23333444566777778888999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 667 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 667 V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
+++||+|++|.|+.+|+||+|||||.|+.|.|++|++..|...+..+..
T Consensus 349 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~ 397 (414)
T 3eiq_A 349 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397 (414)
T ss_dssp CSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887776643
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.3e-41 Score=388.68 Aligned_cols=328 Identities=18% Similarity=0.194 Sum_probs=253.3
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
++++.+.+.+.+++. ||..|+|+|.++++.++.+++++++||||+|||++|++|++.. ..++|||+|+++|+.
T Consensus 12 ~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~ 90 (391)
T 1xti_A 12 DFLLKPELLRAIVDC-GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAF 90 (391)
T ss_dssp GGCCCHHHHHHHHHH-SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHH
T ss_pred hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHH
Confidence 456678899998875 9999999999999999999999999999999999999999854 458999999999999
Q ss_pred HHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeec
Q 001155 448 DQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDE 522 (1136)
Q Consensus 448 dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDE 522 (1136)
|+...+.++ ++++..+.|+.........+.. +.++|+|+||++|. ..+.. .......+++|||||
T Consensus 91 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~iiv~T~~~l~--~~~~~---~~~~~~~~~~vViDE 160 (391)
T 1xti_A 91 QISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCPHIVVGTPGRIL--ALARN---KSLNLKHIKHFILDE 160 (391)
T ss_dssp HHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH-----SCCSEEEECHHHHH--HHHHT---TSSCCTTCSEEEECS
T ss_pred HHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc-----CCCCEEEECHHHHH--HHHHc---CCccccccCEEEEeC
Confidence 999888876 7889999999887666555443 46799999999985 22221 111235689999999
Q ss_pred cccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccC--CCCchh---------hh
Q 001155 523 AHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSF--NRPNLW---------MD 591 (1136)
Q Consensus 523 AH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~--~r~nl~---------~~ 591 (1136)
||++.+| ++|+..+..+. ....+..+++++|||+++.+...+...+.......+.... ...++. ..
T Consensus 161 aH~~~~~-~~~~~~~~~~~--~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
T 1xti_A 161 CDKMLEQ-LDMRRDVQEIF--RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEK 237 (391)
T ss_dssp HHHHTSS-HHHHHHHHHHH--HTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGH
T ss_pred HHHHhhc-cchHHHHHHHH--hhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhH
Confidence 9999876 23555554432 2223478899999999998877776666533322221111 111111 22
Q ss_pred HHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC
Q 001155 592 CEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 665 (1136)
Q Consensus 592 ~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP 665 (1136)
...+.+.+.. ++..........++..+...|+.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|
T Consensus 238 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcc
Confidence 3334444432 2233344456677777888899999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 666 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 666 ~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
++++||+|++|.|+..|+||+||+||.|+.|.|++|++..+...+...+.
T Consensus 318 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 367 (391)
T 1xti_A 318 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367 (391)
T ss_dssp TEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHH
Confidence 99999999999999999999999999999999999998876544433333
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.7e-41 Score=390.27 Aligned_cols=330 Identities=18% Similarity=0.237 Sum_probs=255.1
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|+ ++++.+.+.+.+.+. ||..|+|+|.++++.++.+++++++||||+|||++|++|++.. +.++|||+|
T Consensus 21 ~~f~--~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 21 NTFE--DFYLKRELLMGIFEA-GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp CCGG--GGCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CChh--hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 3455 566779999998875 9999999999999999999999999999999999999999853 458999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+.|+.+.+.++ ++.+..+.|+.....+...+ ...++|+|+||++|. +.+.+. ......+++
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Ivv~T~~~l~--~~~~~~---~~~~~~~~~ 166 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL------NETVHILVGTPGRVL--DLASRK---VADLSDCSL 166 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT------TSCCSEEEECHHHHH--HHHHTT---CSCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh------cCCCCEEEEchHHHH--HHHHhC---CcccccCCE
Confidence 999999999988876 67888888887765443322 147899999999985 333221 122455899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccC-CCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-------
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW------- 589 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~-p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------- 589 (1136)
|||||||++.+.+ |+..+.. +...+ +..++++||||++..+...+...+...............++.
T Consensus 167 vIiDEaH~~~~~~--~~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (400)
T 1s2m_A 167 FIMDEADKMLSRD--FKTIIEQ---ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVE 241 (400)
T ss_dssp EEEESHHHHSSHH--HHHHHHH---HHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECC
T ss_pred EEEeCchHhhhhc--hHHHHHH---HHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEec
Confidence 9999999987643 4444433 33333 367899999999998888777766533222111222222211
Q ss_pred --hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccc
Q 001155 590 --MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMG 661 (1136)
Q Consensus 590 --~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~G 661 (1136)
.....+...+.. ++..........++..+...|+.+..+||+|+..+|..+++.|++|+++|||||+++++|
T Consensus 242 ~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 242 ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 112223333322 223334445666777777889999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhc
Q 001155 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQ 716 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~ 716 (1136)
||+|++++||+|++|.|+..|+||+|||||.|+.|.|++|++..|...+..+...
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~ 376 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQE 376 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHH
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888776653
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-40 Score=376.06 Aligned_cols=325 Identities=19% Similarity=0.251 Sum_probs=252.8
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC-CcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG-HDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g-~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~ 447 (1136)
++++++.+...+++. ||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++.. +.++|||+|+++|+.
T Consensus 10 ~~~l~~~~~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 88 (367)
T 1hv8_A 10 ELNLSDNILNAIRNK-GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAI 88 (367)
T ss_dssp GSSCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHH
T ss_pred hcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHH
Confidence 456778999998876 9999999999999999987 799999999999999999998753 568999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
|+.+.+.+. ++.+..+.|+.....+...+. ..+|+|+||+++. ..+.+ .......+++||||||
T Consensus 89 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~iiv~T~~~l~--~~~~~---~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 89 QVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-------NANIVVGTPGRIL--DHINR---GTLNLKNVKYFILDEA 156 (367)
T ss_dssp HHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-------TCSEEEECHHHHH--HHHHT---TCSCTTSCCEEEEETH
T ss_pred HHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-------CCCEEEecHHHHH--HHHHc---CCcccccCCEEEEeCc
Confidence 999999875 678888888887665443332 6789999999985 22221 1122355899999999
Q ss_pred ccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC------chhhhHHHHHH
Q 001155 524 HCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP------NLWMDCEKVAE 597 (1136)
Q Consensus 524 H~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~------nl~~~~e~lae 597 (1136)
|++.+|+ |+..+..+ +....+..+++++|||+++.....+...++.............. ......+.+.+
T Consensus 157 h~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 157 DEMLNMG--FIKDVEKI--LNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHHTTT--THHHHHHH--HHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhc--hHHHHHHH--HHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHH
Confidence 9999887 55554433 22233578899999999998877776665432221111110000 00122334444
Q ss_pred HHHh-----cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE
Q 001155 598 RLQV-----GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672 (1136)
Q Consensus 598 ~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh 672 (1136)
.+.. ++..........+...+...|+.+..+||+|+..+|..+++.|.+|+.+|||||+++++|+|+|++++||+
T Consensus 233 ~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 312 (367)
T 1hv8_A 233 LLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN 312 (367)
T ss_dssp HHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE
T ss_pred HHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE
Confidence 4432 23333444566777777888999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 673 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 673 ~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
+++|.|+.+|+||+|||||.|++|.|++|++..|...+..+..
T Consensus 313 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~ 355 (367)
T 1hv8_A 313 YHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355 (367)
T ss_dssp SSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHH
T ss_pred ecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887766543
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.8e-40 Score=380.00 Aligned_cols=328 Identities=15% Similarity=0.219 Sum_probs=247.1
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC--CcEEEEccCCChHHHHHHhhhhhC------CCcEEEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG--HDVFVLMPTGGGKSLTYQLPALIC------PGITLVI 439 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g--~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVI 439 (1136)
..|+ ++++++.+.+.+.+. ||..|+|+|.++++.++.+ ++++++||||+|||++|++|++.. ++++|||
T Consensus 5 ~~f~--~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 5 KSFD--ELGLAPELLKGIYAM-KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp CSST--TSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cCHh--hCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 4565 456779999999885 9999999999999999987 899999999999999999999853 5689999
Q ss_pred ccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcc
Q 001155 440 SPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515 (1136)
Q Consensus 440 sPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l 515 (1136)
+|+++|+.|+.+.+.++ ++.+..+.++...... ....+|+|+||+++. +.+.+ .......+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~iiv~T~~~l~--~~~~~---~~~~~~~~ 146 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----------QINAQVIVGTPGTVL--DLMRR---KLMQLQKI 146 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----------CBCCSEEEECHHHHH--HHHHT---TCBCCTTC
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----------cCCCCEEEEcHHHHH--HHHHc---CCcccccC
Confidence 99999999999999875 4666666665432211 136899999999985 33322 12224558
Q ss_pred ceeeeeccccccc-cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh----
Q 001155 516 ARIVIDEAHCVSQ-WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW---- 589 (1136)
Q Consensus 516 ~lVVIDEAH~ls~-wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~---- 589 (1136)
++|||||||++.+ ++ |+..+..+. ....++.+++++|||+++.+.......+.......... ....+.+.
T Consensus 147 ~~iIiDEah~~~~~~~--~~~~~~~~~--~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (395)
T 3pey_A 147 KIFVLDEADNMLDQQG--LGDQCIRVK--RFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYM 222 (395)
T ss_dssp CEEEEETHHHHHHSTT--HHHHHHHHH--HTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEE
T ss_pred CEEEEEChhhhcCccc--cHHHHHHHH--HhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEE
Confidence 9999999999976 44 555444332 22234688999999999987776665554332222111 11111111
Q ss_pred ------hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecc
Q 001155 590 ------MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVA 657 (1136)
Q Consensus 590 ------~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~a 657 (1136)
.....+.+.+.. ++..........++..+...++.+..+||+|+..+|..+++.|++|+++|||||++
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 302 (395)
T 3pey_A 223 DCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV 302 (395)
T ss_dssp ECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG
T ss_pred EcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh
Confidence 111222222221 22333444566777778888999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEcCCCC------CHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHhcC
Q 001155 658 FGMGINKPDVRFVIHHSLPK------SIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMISQG 717 (1136)
Q Consensus 658 lg~GIDlP~V~~VIh~d~P~------Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~~~ 717 (1136)
+++|||+|++++||+|++|. |+..|+||+|||||.|..|.|++|+...+...+...+.+.
T Consensus 303 ~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~ 368 (395)
T 3pey_A 303 LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 368 (395)
T ss_dssp GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHH
T ss_pred hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999987766655555543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.6e-40 Score=370.58 Aligned_cols=311 Identities=19% Similarity=0.274 Sum_probs=235.2
Q ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc-
Q 001155 378 TKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA- 456 (1136)
Q Consensus 378 s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~- 456 (1136)
.+.+.+.+++ +||..|+|+|.++++.++++++++++||||+|||++|++|++..+.++|||+|+++|+.|+.+.+.+.
T Consensus 2 ~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 3567777776 59999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCC
Q 001155 457 ---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDF 533 (1136)
Q Consensus 457 ---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdf 533 (1136)
++.+..+.|+.....+...+ ...+|+|+||++|. +.+.+ .......+++|||||||++.+|+ |
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~v~T~~~l~--~~~~~---~~~~~~~~~~iViDEah~~~~~~--~ 146 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRV-------RNADIVVATPGRLL--DLWSK---GVIDLSSFEIVIIDEADLMFEMG--F 146 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHH-------TTCSEEEECHHHHH--HHHHT---TSCCGGGCSEEEEESHHHHHHTT--C
T ss_pred hhcCCcEEEEECCcchHHHHhhc-------CCCCEEEECHHHHH--HHHHc---CCcchhhCcEEEEEChHHhhccc--c
Confidence 57888899988766544332 25889999999985 32222 11123558999999999999988 5
Q ss_pred ccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh-------hhHHHHHHHHHh----
Q 001155 534 RPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW-------MDCEKVAERLQV---- 601 (1136)
Q Consensus 534 R~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~-------~~~e~lae~L~~---- 601 (1136)
...+.. +....+ ..+++++|||+++.....+...+.....+ ......+++. .......+.+..
T Consensus 147 ~~~~~~---~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (337)
T 2z0m_A 147 IDDIKI---ILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEI--EACIGLANVEHKFVHVKDDWRSKVQALRENKDK 221 (337)
T ss_dssp HHHHHH---HHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEE--ECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCS
T ss_pred HHHHHH---HHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceee--ecccccCCceEEEEEeChHHHHHHHHHHhCCCC
Confidence 544433 333343 56678899999999887777766433221 1111111111 011112233322
Q ss_pred -cc-cccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCH
Q 001155 602 -GL-SYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSI 679 (1136)
Q Consensus 602 -~l-~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Si 679 (1136)
.+ ..........+...+ ..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|.|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLF----DNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTC----TTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHh----hhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 11 112222233332222 258899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 680 EGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 680 e~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
..|+||+|||||.|+.|.|++|+. .+...++.+
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHH
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHH
Confidence 999999999999999999999999 776665554
No 15
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.8e-40 Score=378.57 Aligned_cols=324 Identities=18% Similarity=0.179 Sum_probs=241.2
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC--CcEEEEccCCChHHHHHHhhhhhC------CCcEEEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG--HDVFVLMPTGGGKSLTYQLPALIC------PGITLVI 439 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g--~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVI 439 (1136)
..|. ++++++.+.+.+++. ||..|+|+|.++++.++.+ ++++++||||+|||++|++|++.. .+++|||
T Consensus 25 ~~f~--~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 25 KSFE--ELRLKPQLLQGVYAM-GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp SCTG--GGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCHh--hCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 4455 456678999998874 9999999999999999987 899999999999999999999843 3489999
Q ss_pred ccChhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhc
Q 001155 440 SPLVSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAREL 514 (1136)
Q Consensus 440 sPtraL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~ 514 (1136)
+|+++|+.|+.+.+.++ ++.+....++....... ....+|+|+||++|. +.+.+ . .......
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ivv~T~~~l~--~~~~~-~-~~~~~~~ 168 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KISEQIVIGTPGTVL--DWCSK-L-KFIDPKK 168 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---------CCCCSEEEECHHHHH--HHHTT-S-CSSCGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---------cCCCCEEEECchHHH--HHHHh-c-CCcChhh
Confidence 99999999998888775 46677777665433211 136789999999985 22211 0 1112356
Q ss_pred cceeeeeccccccc-cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEeccc-CCCCchh---
Q 001155 515 LARIVIDEAHCVSQ-WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQS-FNRPNLW--- 589 (1136)
Q Consensus 515 l~lVVIDEAH~ls~-wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s-~~r~nl~--- 589 (1136)
+++|||||||++.+ ++ |...+..+ +....++.+++++|||+++.+.......+........... .....+.
T Consensus 169 ~~~iViDEah~~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 169 IKVFVLDEADVMIATQG--HQDQSIRI--QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp CCEEEEETHHHHHSTTT--THHHHHHH--HHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEE
T ss_pred CcEEEEeCHHHHhhcCC--cHHHHHHH--HhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEE
Confidence 89999999999976 44 55444433 2222346889999999999887766666543322211111 1111111
Q ss_pred -------hhHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeec
Q 001155 590 -------MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATV 656 (1136)
Q Consensus 590 -------~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~ 656 (1136)
.....+.+.+.. +++.........++..+...++.+..+||+|+..+|..+++.|++|+++|||||+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred EEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 122223333321 2333444556777777888899999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEcCCC------CCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHH
Q 001155 657 AFGMGINKPDVRFVIHHSLP------KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVK 711 (1136)
Q Consensus 657 alg~GIDlP~V~~VIh~d~P------~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~ 711 (1136)
++++|||+|++++||+|++| .+..+|+||+|||||.|..|.|++|++..+...+.
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 385 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNIL 385 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHH
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHH
Confidence 99999999999999999999 57899999999999999999999999877633333
No 16
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.2e-41 Score=385.79 Aligned_cols=323 Identities=20% Similarity=0.256 Sum_probs=147.4
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
++++.+.+.+.+.+ +||..|+|+|.++++.++.+++++++||||+|||++|++|++.. .+++|||+|+++|+.
T Consensus 25 ~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~ 103 (394)
T 1fuu_A 25 DMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELAL 103 (394)
T ss_dssp GGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHH
Confidence 45677999999987 49999999999999999999999999999999999999999852 568999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
|+.+.+.+. ++++..+.|+.........+. ..+|+|+||+++. +.+.+ .......+++||||||
T Consensus 104 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~--~~~~~---~~~~~~~~~~vIiDEa 171 (394)
T 1fuu_A 104 QIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVF--DNIQR---RRFRTDKIKMFILDEA 171 (394)
T ss_dssp HHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHH--HHHHT---TSSCCTTCCEEEEETH
T ss_pred HHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHH--HHHHh---CCcchhhCcEEEEECh
Confidence 999988775 688899999888765544332 5789999999985 33322 1122345899999999
Q ss_pred ccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh---h-------hH
Q 001155 524 HCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW---M-------DC 592 (1136)
Q Consensus 524 H~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~---~-------~~ 592 (1136)
|++.+|+ |+..+..+. ....+..+++++|||+++.+...+...+.......... ....+++. . ..
T Consensus 172 h~~~~~~--~~~~~~~~~--~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 172 DEMLSSG--FKEQIYQIF--TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp HHHHHTT--CHHHHHHHH--HHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred HHhhCCC--cHHHHHHHH--HhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 9998887 666655442 22335678999999999987776666654332222211 11111111 0 00
Q ss_pred HHHHHHHH------hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCC
Q 001155 593 EKVAERLQ------VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 666 (1136)
Q Consensus 593 e~lae~L~------~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~ 666 (1136)
..+.+.+. .++..........+...+...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 248 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 248 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 11111111 112222223344555666677889999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHH
Q 001155 667 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 667 V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~l 713 (1136)
+++||++++|.++..|+||+||+||.|++|.|++|++..|...+..+
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 374 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 374 (394)
T ss_dssp -----------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHH
Confidence 99999999999999999999999999999999999999887765554
No 17
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-40 Score=441.09 Aligned_cols=353 Identities=22% Similarity=0.296 Sum_probs=258.7
Q ss_pred CCCCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc-----CC
Q 001155 390 GNHSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA-----NI 458 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~-----gI 458 (1136)
+|+.|+|+|.++|+.++. ++|++|+||||||||++|.+|++.. ++++|||+|+++|+.|++..|.+. |+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 689999999999999986 5789999999999999999999743 678999999999999999998753 78
Q ss_pred CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch-
Q 001155 459 PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY- 537 (1136)
Q Consensus 459 ~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y- 537 (1136)
++..++|+...+.+. . ...+|+|+|||+| +.+.+.+........+++|||||+|+|.+. ..+.+
T Consensus 1003 ~V~~ltGd~~~~~~~--~-------~~~~IiV~TPEkl---d~llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le 1067 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKL--L-------GKGNIIISTPEKW---DILSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLE 1067 (1724)
T ss_dssp CEEECCSCHHHHHHH--H-------HHCSEEEECHHHH---HHHHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHH
T ss_pred EEEEEECCCCcchhh--c-------CCCCEEEECHHHH---HHHHhCcccccccceeeEEEeechhhcCCC---CCccHH
Confidence 899999986543321 1 2678999999999 677776666566678999999999999652 22322
Q ss_pred ---hhhhhhhcc-CCCCCEEEEeeccchhhHHHHHHHhcCcce--EEecccCCCCc-hh---------------------
Q 001155 538 ---QGLGILKQK-FPNTPVLALTATATASVKEDVVQALGLVNC--IIFRQSFNRPN-LW--------------------- 589 (1136)
Q Consensus 538 ---~~L~~l~~~-~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~--~i~~~s~~r~n-l~--------------------- 589 (1136)
.++..+... .+++++|+||||+++. .++.++|+.... ..|..+ .||. +.
T Consensus 1068 ~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1068 VICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 223323323 3478899999999986 789999987542 223222 2332 11
Q ss_pred ---------------------hhHHHHHHHHHhccccc----chh--hHHHH-----------HHHHhhcCCeEEEEcCC
Q 001155 590 ---------------------MDCEKVAERLQVGLSYG----HFF--LLKEF-----------YVVSLECGHKAAFYHGS 631 (1136)
Q Consensus 590 ---------------------~~~e~lae~L~~~l~~~----~~~--~~~~~-----------~~~l~~~g~~v~~~Hag 631 (1136)
..|+.++..|....... .+. ...++ ..... ..++++||||
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l--~~GIa~hHag 1222 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETL--LNGVGYLHEG 1222 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHH--HTTEEEECTT
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHH--hCCEEEECCC
Confidence 22333333222110000 000 00000 11111 3459999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEE----------EcCCCCCHhHHHHHhcccCCCCC--CcEEE
Q 001155 632 IDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----------HHSLPKSIEGYHQECGRAGRDGQ--RSSCV 699 (1136)
Q Consensus 632 m~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VI----------h~d~P~Sie~YiQriGRAGR~G~--~g~~i 699 (1136)
|+..+|..+++.|++|.++|||||++++||||+|++++|| |+..|.++.+|+||+|||||.|. .|.|+
T Consensus 1223 L~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~av 1302 (1724)
T 4f92_B 1223 LSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCV 1302 (1724)
T ss_dssp SCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999 33457799999999999999997 79999
Q ss_pred EEeccccHHHHHHHHhcCcCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHHHHhcHHHHHHHH
Q 001155 700 LYYSYSDFIRVKHMISQGVAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSYCENDVDCRRLLQ 765 (1136)
Q Consensus 700 l~~~~~D~~~~~~li~~~~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~l 765 (1136)
+++...+...+++++..+.|.+|.+.....+... ..+....+.+.+++++|+.++...||...
T Consensus 1303 ll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~---~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~ 1365 (1724)
T 4f92_B 1303 IMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFN---AEIVTKTIENKQDAVDYLTWTFLYRRMTQ 1365 (1724)
T ss_dssp EEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHH---HHHHTTSCCBHHHHHHHHTTSSHHHHHHH
T ss_pred EEecchHHHHHHHHhCCCCceeeecccchHHHHH---HHHHhcccCCHHHHHHHHHhhHHHHHHhc
Confidence 9999999999999999999998877544322111 11122223456788999998877777543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.8e-39 Score=375.90 Aligned_cols=318 Identities=16% Similarity=0.199 Sum_probs=235.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
+++.+.+++.||| .|+|+|.++++.++.|+|++++||||+|||++|++|++. .++++|||+|+++|+.|+...+.+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHH
Confidence 5677788898999 689999999999999999999999999999999999876 578999999999999999999999
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccC--
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG-- 530 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wG-- 530 (1136)
.++++..++|+....++...+..+.. +.++|+|+||++|. +.+.. .....+++|||||||++.+||
T Consensus 87 ~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv~Tp~~l~--~~l~~-----~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 87 LADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVS--KNREK-----LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCCSEEEEEHHHHH--HCHHH-----HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HccCCceEEEEECCCChhhHHHHHHHhhc--CCCCEEEECHHHHH--HHHHH-----hccccccEEEEeChHhhhhccch
Confidence 48899999999988655555554443 45899999999995 33321 223469999999999999887
Q ss_pred -------CCCccc-hhhhhhhhc------cC---CCCCEEEEeec-cchhhHHHHHH-HhcCcceEEecccCCCCchh--
Q 001155 531 -------HDFRPD-YQGLGILKQ------KF---PNTPVLALTAT-ATASVKEDVVQ-ALGLVNCIIFRQSFNRPNLW-- 589 (1136)
Q Consensus 531 -------hdfR~~-y~~L~~l~~------~~---p~~~iv~LSAT-~~~~v~~dI~~-~L~l~~~~i~~~s~~r~nl~-- 589 (1136)
++|++. +..+..... .+ +..+++++||| .+..+...+.. .+++.... ......++.
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR---LVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC---CCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc---cccccccchhe
Confidence 678888 444322211 11 56789999999 55554433333 23221100 000011110
Q ss_pred ----hhHHHHHHHHHh-----cccccchhhHHHHHHHHhhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCceEEEe----e
Q 001155 590 ----MDCEKVAERLQV-----GLSYGHFFLLKEFYVVSLECGHKAA-FYHGSIDPAQRAFVQKQWSKDEINIICA----T 655 (1136)
Q Consensus 590 ----~~~e~lae~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~-~~Hagm~~~dR~~i~~~F~~g~i~VLVA----T 655 (1136)
...+.+.+.+.. +++.........+...+...|+.+. .|||. +|. ++.|++|+++|||| |
T Consensus 235 ~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T 308 (414)
T 3oiy_A 235 RISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYY 308 (414)
T ss_dssp EESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTT
T ss_pred eeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcC
Confidence 122333444432 2233344456667777778899998 88984 444 99999999999999 9
Q ss_pred ccccccccCCC-ccEEEEcCCC--CCHhHHHHHhcccCCCC----CCcEEEEEecccc-HHHHHHHHh
Q 001155 656 VAFGMGINKPD-VRFVIHHSLP--KSIEGYHQECGRAGRDG----QRSSCVLYYSYSD-FIRVKHMIS 715 (1136)
Q Consensus 656 ~alg~GIDlP~-V~~VIh~d~P--~Sie~YiQriGRAGR~G----~~g~~il~~~~~D-~~~~~~li~ 715 (1136)
+++++|||+|+ |++||+|++| .++.+|+||+|||||.| ..|.|++|+...+ +..+.+.+.
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred chhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 99999999999 9999999999 99999999999999988 5899999994322 234444444
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.8e-39 Score=414.43 Aligned_cols=370 Identities=19% Similarity=0.256 Sum_probs=246.0
Q ss_pred HHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHc--CCCe
Q 001155 386 KKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQA--NIPA 460 (1136)
Q Consensus 386 k~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~--gI~v 460 (1136)
...|+|. |+++|.++|+.++.|+|++++||||+|||+||++++.. .++++|||+|+++|+.|++..+.+. ++.+
T Consensus 33 ~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v 111 (997)
T 4a4z_A 33 ARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNI 111 (997)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeE
Confidence 3456775 89999999999999999999999999999999888764 3678999999999999999999986 7799
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
..++|+.... +..+|+|+||++|. +.+.+ .......+++|||||||++.+|+ |...+..+
T Consensus 112 ~~l~G~~~~~-------------~~~~IlV~Tpe~L~--~~l~~---~~~~l~~l~lvViDEaH~l~d~~--~g~~~e~i 171 (997)
T 4a4z_A 112 GLITGDVQIN-------------PDANCLIMTTEILR--SMLYR---GADLIRDVEFVIFDEVHYVNDQD--RGVVWEEV 171 (997)
T ss_dssp EEECSSCEEC-------------TTSSEEEEEHHHHH--HHHHH---TCSGGGGEEEEEECCTTCCCTTC--TTCCHHHH
T ss_pred EEEeCCCccC-------------CCCCEEEECHHHHH--HHHHh---CchhhcCCCEEEEECcccccccc--hHHHHHHH
Confidence 9999987532 46899999999995 33322 22234569999999999999998 55556544
Q ss_pred hhhhccCCCCCEEEEeeccchhhHHHHHHHhcC---cceEEecccCCCCchh----------------------------
Q 001155 541 GILKQKFPNTPVLALTATATASVKEDVVQALGL---VNCIIFRQSFNRPNLW---------------------------- 589 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l---~~~~i~~~s~~r~nl~---------------------------- 589 (1136)
+....+++++++||||+++.. ++..+++. ....++.....+.++.
T Consensus 172 --i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 172 --IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp --HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred --HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 233345789999999998764 56666542 1122222111111110
Q ss_pred --------------------------------------------------------------------------hhHHHH
Q 001155 590 --------------------------------------------------------------------------MDCEKV 595 (1136)
Q Consensus 590 --------------------------------------------------------------------------~~~e~l 595 (1136)
.....+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 001112
Q ss_pred HHHHHh-----cccc-cchhhHHHHHHHHhhc---------------------------------------CCeEEEEcC
Q 001155 596 AERLQV-----GLSY-GHFFLLKEFYVVSLEC---------------------------------------GHKAAFYHG 630 (1136)
Q Consensus 596 ae~L~~-----~l~~-~~~~~~~~~~~~l~~~---------------------------------------g~~v~~~Ha 630 (1136)
.+.+.. .+.+ ........+...+... ..++.+|||
T Consensus 328 i~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~ 407 (997)
T 4a4z_A 328 VNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHG 407 (997)
T ss_dssp HHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecC
Confidence 222211 1111 1111122222222222 235899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCC---------CHhHHHHHhcccCCCC--CCcEEE
Q 001155 631 SIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPK---------SIEGYHQECGRAGRDG--QRSSCV 699 (1136)
Q Consensus 631 gm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~---------Sie~YiQriGRAGR~G--~~g~~i 699 (1136)
+|+..+|..+++.|.+|.++|||||+++++|||+|+ +.||+++.|+ |+.+|+||+|||||.| ..|.|+
T Consensus 408 gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 408 GLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp TSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 999999999999999999999999999999999999 6667766666 9999999999999999 478888
Q ss_pred EEe--ccccHHHHHHHHhcC-cCCCCCCCCCCCcccccchhhHHHHhHHHHHHHHHH-----HHhcHHHHHHHHHhhhCC
Q 001155 700 LYY--SYSDFIRVKHMISQG-VAEQSPFTPGHNRFNVANSGRVLETNTENLLRMVSY-----CENDVDCRRLLQLVHFGE 771 (1136)
Q Consensus 700 l~~--~~~D~~~~~~li~~~-~~~es~~~~~~~~~~~~~~~~~~e~~~~~l~~mv~y-----c~~~~~CRR~~ll~yFge 771 (1136)
+++ ...+...++.++... .+..+.+...++- ....+......+..|+++ +.....|++..++.+|++
T Consensus 487 ~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm-----~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~ 561 (997)
T 4a4z_A 487 VMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNM-----ILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQE 561 (997)
T ss_dssp EECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHH-----HHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCcchHHHHHHHhcCCCcccccccccchHH-----HHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888 445667777776543 2233433333210 111111112233445443 344578999999999999
Q ss_pred CCCCccccCCCCCCCC
Q 001155 772 KFDSAHCKKTCDNCSK 787 (1136)
Q Consensus 772 ~~~~~~C~~~CDnC~~ 787 (1136)
.+....|. .||+|..
T Consensus 562 ~~~~~~~~-~c~~c~~ 576 (997)
T 4a4z_A 562 ELQTIEYK-SCEICDN 576 (997)
T ss_dssp HHHC------------
T ss_pred HHHHhhhh-ccccccc
Confidence 87666676 7999974
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.7e-40 Score=389.38 Aligned_cols=324 Identities=18% Similarity=0.192 Sum_probs=136.9
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC--CcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG--HDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSL 445 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g--~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL 445 (1136)
.+++++.+.+.+.+ +||..|+|+|.++++.++.+ +++|++||||+|||++|++|++.. .+++|||+|+++|
T Consensus 96 ~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~L 174 (479)
T 3fmp_B 96 ELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYEL 174 (479)
T ss_dssp GGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHH
T ss_pred HcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHH
Confidence 45567899999887 59999999999999999986 899999999999999999999854 2389999999999
Q ss_pred HHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 446 IQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 446 ~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
+.|+...+.++ ++.+....++....... ....+|+|+||++|. +.+.+ . .......+++|||
T Consensus 175 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Ivv~Tp~~l~--~~l~~-~-~~~~~~~~~~iVi 241 (479)
T 3fmp_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KISEQIVIGTPGTVL--DWCSK-L-KFIDPKKIKVFVL 241 (479)
T ss_dssp HHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---------CCCCSEEEECHHHHH--HHHTT-S-CCCCGGGCCEEEE
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCccccccc---------cCCCCEEEECchHHH--HHHHh-c-CCcCcccCCEEEE
Confidence 99997777664 46666666655432211 135789999999985 33211 0 1112356999999
Q ss_pred eccccccc-cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCC-Cchh---hhH---
Q 001155 521 DEAHCVSQ-WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNR-PNLW---MDC--- 592 (1136)
Q Consensus 521 DEAH~ls~-wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r-~nl~---~~~--- 592 (1136)
||||++.+ ++ |...+..+ +....++.+++++|||++..+.......+.....+.+...... ..+. ..+
T Consensus 242 DEah~~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 317 (479)
T 3fmp_B 242 DEADVMIATQG--HQDQSIRI--QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR 317 (479)
T ss_dssp CCHHHHHTSTT--HHHHHHHH--HTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------
T ss_pred ECHHHHhhcCC--cHHHHHHH--HhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH
Confidence 99999976 44 44443332 2223347889999999999887666655533322222111110 1110 000
Q ss_pred ----HHHHHHHH------hcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccc
Q 001155 593 ----EKVAERLQ------VGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGI 662 (1136)
Q Consensus 593 ----e~lae~L~------~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GI 662 (1136)
..+...+. .+++.........++..+...++.+..+||+|+..+|..+++.|++|+++|||||+++++||
T Consensus 318 ~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 318 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 11111111 11222222334455556667789999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCCC------CCHhHHHHHhcccCCCCCCcEEEEEeccccHHHHHHHHh
Q 001155 663 NKPDVRFVIHHSLP------KSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 663 DlP~V~~VIh~d~P------~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~~~li~ 715 (1136)
|+|++++||+||+| .++..|+||+|||||.|..|.|++|++..+...+...+.
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~ 456 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 456 (479)
T ss_dssp -----------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHH
Confidence 99999999999999 577899999999999999999999998776444333333
No 21
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=404.19 Aligned_cols=360 Identities=17% Similarity=0.149 Sum_probs=213.4
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----C----CcEEEEccChhhHHHH-HHHHHHcC---CC
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----P----GITLVISPLVSLIQDQ-IMHLLQAN---IP 459 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----~----g~~LVIsPtraL~~dq-v~~L~~~g---I~ 459 (1136)
.|+|+|.++++.++.|+|+|++||||+|||++|++|++.. . +++|||+|+++|+.|| +..+.+.+ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 6899999999999999999999999999999999999753 2 8899999999999999 99998873 89
Q ss_pred eEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHH---HhhhhhhccceeeeeccccccccCCCCccc
Q 001155 460 ATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQL---ESLNARELLARIVIDEAHCVSQWGHDFRPD 536 (1136)
Q Consensus 460 v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l---~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~ 536 (1136)
+..++|+.....+...+. +..+|+|+||++|. +.+.+.. ........+++|||||||++. +++.|+..
T Consensus 87 v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~--~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~-~~~~~~~i 157 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV------KSCDIIISTAQILE--NSLLNLENGEDAGVQLSDFSLIIIDECHHTN-KEAVYNNI 157 (699)
T ss_dssp EEEEC----CCCCHHHHH------HSCSEEEEEHHHHH--HHTC--------CCCGGGCSEEEEESGGGCB-TTBSSCSH
T ss_pred EEEEeCCcchhhHHHhhh------cCCCEEEECHHHHH--HHHhccccccccceecccCcEEEEECccccC-ccchHHHH
Confidence 999999876554333332 37899999999995 2221111 111233568999999999983 22233332
Q ss_pred hhhhhh--hhcc---------CCCCCEEEEeeccchh-------hHHHHH---HHhcC-----------------cce--
Q 001155 537 YQGLGI--LKQK---------FPNTPVLALTATATAS-------VKEDVV---QALGL-----------------VNC-- 576 (1136)
Q Consensus 537 y~~L~~--l~~~---------~p~~~iv~LSAT~~~~-------v~~dI~---~~L~l-----------------~~~-- 576 (1136)
...+.. +... .+.+++++||||+... ....+. ..++. ..+
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 221110 1111 1677899999999973 333333 22222 000
Q ss_pred EEecccCCCCchh-hhHH--------------------------------------------------------------
Q 001155 577 IIFRQSFNRPNLW-MDCE-------------------------------------------------------------- 593 (1136)
Q Consensus 577 ~i~~~s~~r~nl~-~~~e-------------------------------------------------------------- 593 (1136)
.+.......+..+ ....
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000
Q ss_pred -------------------------------------------------------------------HHHHHHHh-----
Q 001155 594 -------------------------------------------------------------------KVAERLQV----- 601 (1136)
Q Consensus 594 -------------------------------------------------------------------~lae~L~~----- 601 (1136)
.+.+.|..
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 00000100
Q ss_pred -----cc-cccchhhHHHHHHHHhhc------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCceEEEeecccccc
Q 001155 602 -----GL-SYGHFFLLKEFYVVSLEC------GHKAAFYHGS--------IDPAQRAFVQKQWSKDEINIICATVAFGMG 661 (1136)
Q Consensus 602 -----~l-~~~~~~~~~~~~~~l~~~------g~~v~~~Hag--------m~~~dR~~i~~~F~~g~i~VLVAT~alg~G 661 (1136)
.+ +.........+...+... |+.+..+||+ |+..+|..+++.|++|+++|||||+++++|
T Consensus 398 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~G 477 (699)
T 4gl2_A 398 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEG 477 (699)
T ss_dssp SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTT
T ss_pred CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccC
Confidence 01 111112234444455444 8999999999 999999999999999999999999999999
Q ss_pred ccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH--------HHHHHHHhcCcCCCCCCCCCCCcccc
Q 001155 662 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF--------IRVKHMISQGVAEQSPFTPGHNRFNV 733 (1136)
Q Consensus 662 IDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~--------~~~~~li~~~~~~es~~~~~~~~~~~ 733 (1136)
||+|++++|||||+|+|+..|+||+|||||.| +.+++++...+. .....++.+.++....+. .
T Consensus 478 IDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 548 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMK-------P 548 (699)
T ss_dssp SCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSC-------H
T ss_pred CccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCC-------H
Confidence 99999999999999999999999999998876 445555443331 112233333222111110 0
Q ss_pred cchhhHHHHhHHHHHHHHHHHHhcHHHHHHHHHhhhCCCC
Q 001155 734 ANSGRVLETNTENLLRMVSYCENDVDCRRLLQLVHFGEKF 773 (1136)
Q Consensus 734 ~~~~~~~e~~~~~l~~mv~yc~~~~~CRR~~ll~yFge~~ 773 (1136)
......+ ....+..+..++.. ..|||..++.|||+..
T Consensus 549 ~~~~~~i--~~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~ 585 (699)
T 4gl2_A 549 EEYAHKI--LELQMQSIMEKKMK-TKRNIAKHYKNNPSLI 585 (699)
T ss_dssp HHHHHHH--HHHHHHHHHHCCSC-CC----------CCSE
T ss_pred HHHHHHH--HHHHHHHHHHHHHH-HhhhHHhhhhcCccee
Confidence 0111111 12235677788875 5899999999999864
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.3e-38 Score=396.15 Aligned_cols=305 Identities=18% Similarity=0.212 Sum_probs=182.4
Q ss_pred hhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhhHHHHHHHHHHc---
Q 001155 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMHLLQA--- 456 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL~~dqv~~L~~~--- 456 (1136)
.+||..||++|.++++.++.|+|+|++||||+|||++|++|++.. .+++|||+|+++|+.||+..+.+.
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred ccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 359999999999999999999999999999999999999999743 278999999999999999999886
Q ss_pred -CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCcc
Q 001155 457 -NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRP 535 (1136)
Q Consensus 457 -gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~ 535 (1136)
++++..++|+.....+...+.. ..+|+|+||++|. +.+... .+.....+++|||||||++..+.
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~------~~~Iiv~Tp~~L~--~~l~~~--~~~~l~~~~~vViDEaH~~~~~~----- 152 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVE------NNDIIILTPQILV--NNLKKG--TIPSLSIFTLMIFDECHNTSKQH----- 152 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHH------TCSEEEECHHHHH--HHHHTT--SSCCGGGCSEEEEETGGGCSTTC-----
T ss_pred CCceEEEEeCCccccccHHHhcc------CCCEEEECHHHHH--HHHhcC--cccccccccEEEEeCCCcccCcc-----
Confidence 7899999998765443333322 6899999999985 333221 11124558999999999997543
Q ss_pred chhhhh--hhhc-----cCCCCCEEEEeeccc-------hhhHHHHHHHhcCcceEEec---------------------
Q 001155 536 DYQGLG--ILKQ-----KFPNTPVLALTATAT-------ASVKEDVVQALGLVNCIIFR--------------------- 580 (1136)
Q Consensus 536 ~y~~L~--~l~~-----~~p~~~iv~LSAT~~-------~~v~~dI~~~L~l~~~~i~~--------------------- 580 (1136)
.|..+. .+.. ..+..++++||||+. ......+...+.......+.
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~ 232 (696)
T 2ykg_A 153 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 232 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEE
Confidence 233321 1111 125678999999997 33334444332110000000
Q ss_pred -ccCCCCchh----------------------------------------------------------------------
Q 001155 581 -QSFNRPNLW---------------------------------------------------------------------- 589 (1136)
Q Consensus 581 -~s~~r~nl~---------------------------------------------------------------------- 589 (1136)
.......++
T Consensus 233 ~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 233 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 312 (696)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHH
T ss_pred ecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Confidence 000000000
Q ss_pred -------------------------------------------------------------------hhHHHHHHHHHh-
Q 001155 590 -------------------------------------------------------------------MDCEKVAERLQV- 601 (1136)
Q Consensus 590 -------------------------------------------------------------------~~~e~lae~L~~- 601 (1136)
.....+.+.+..
T Consensus 313 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 313 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 000111111111
Q ss_pred ---------cccccchhhHHHHHHHHhhcC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCceEEEeecccc
Q 001155 602 ---------GLSYGHFFLLKEFYVVSLECG----HKAAFY--------HGSIDPAQRAFVQKQWSK-DEINIICATVAFG 659 (1136)
Q Consensus 602 ---------~l~~~~~~~~~~~~~~l~~~g----~~v~~~--------Hagm~~~dR~~i~~~F~~-g~i~VLVAT~alg 659 (1136)
+++.........+...+...| +.+..+ ||+|+..+|..+++.|++ |+++|||||++++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~ 472 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 472 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSC
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhh
Confidence 111112223445555566666 777777 569999999999999998 9999999999999
Q ss_pred ccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 660 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 660 ~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
+|||+|++++|||||+|.|++.|+||+|| ||. ..|.|+++++..+...
T Consensus 473 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 473 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp CC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred cCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 99999999999999999999999999999 998 7899999999887743
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4e-37 Score=385.30 Aligned_cols=320 Identities=22% Similarity=0.331 Sum_probs=228.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHH-HHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINA-TMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQD 448 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~-il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~d 448 (1136)
++++++.+.+.+++ +||..|+|+|.++++. +..+++++++||||+|||++|++|++. .++++|||+|+++|+.|
T Consensus 5 ~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q 83 (720)
T 2zj8_A 5 ELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEE 83 (720)
T ss_dssp GCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHH
T ss_pred hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 34566888888877 6999999999999998 778999999999999999999999873 47899999999999999
Q ss_pred HHHHHHH---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc
Q 001155 449 QIMHLLQ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC 525 (1136)
Q Consensus 449 qv~~L~~---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ 525 (1136)
++..+.. .|+++..++|+.....+. .+.++|+|+|||+|. .+.+. .......+++|||||||+
T Consensus 84 ~~~~~~~l~~~g~~v~~~~G~~~~~~~~---------~~~~~Iiv~Tpe~l~---~~~~~--~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 84 KFQEFQDWEKIGLRVAMATGDYDSKDEW---------LGKYDIIIATAEKFD---SLLRH--GSSWIKDVKILVADEIHL 149 (720)
T ss_dssp HHHHTGGGGGGTCCEEEECSCSSCCCGG---------GGGCSEEEECHHHHH---HHHHH--TCTTGGGEEEEEEETGGG
T ss_pred HHHHHHHHHhcCCEEEEecCCCCccccc---------cCCCCEEEECHHHHH---HHHHc--ChhhhhcCCEEEEECCcc
Confidence 9999864 389999999987654321 147899999999994 33332 222245699999999999
Q ss_pred ccccCCCCccchhhh-hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcc--------eE---Eeccc---C-C-----
Q 001155 526 VSQWGHDFRPDYQGL-GILKQKFPNTPVLALTATATASVKEDVVQALGLVN--------CI---IFRQS---F-N----- 584 (1136)
Q Consensus 526 ls~wGhdfR~~y~~L-~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~--------~~---i~~~s---~-~----- 584 (1136)
+.+|+ +...+..+ ..+. ++.++++||||+++. .++..+++... +. ++... + .
T Consensus 150 l~~~~--r~~~~~~ll~~l~---~~~~ii~lSATl~n~--~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 150 IGSRD--RGATLEVILAHML---GKAQIIGLSATIGNP--EELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GGCTT--THHHHHHHHHHHB---TTBEEEEEECCCSCH--HHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEE
T ss_pred cCCCc--ccHHHHHHHHHhh---cCCeEEEEcCCcCCH--HHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhh
Confidence 98765 33333322 1222 278899999999874 67788875321 00 00000 0 0
Q ss_pred CCchh--------------------hhHHHHHHHHHhcccc--c--chhhHHHHH----------HHHhhcCCeEEEEcC
Q 001155 585 RPNLW--------------------MDCEKVAERLQVGLSY--G--HFFLLKEFY----------VVSLECGHKAAFYHG 630 (1136)
Q Consensus 585 r~nl~--------------------~~~e~lae~L~~~l~~--~--~~~~~~~~~----------~~l~~~g~~v~~~Ha 630 (1136)
..... ..++.++..|...+.. . ....+.... ........++.+|||
T Consensus 223 ~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 223 FSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp CSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred hhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 00000 1222233332211000 0 000000000 000011345999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE----cC----CCCCHhHHHHHhcccCCCC--CCcEEEE
Q 001155 631 SIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS----LPKSIEGYHQECGRAGRDG--QRSSCVL 700 (1136)
Q Consensus 631 gm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh----~d----~P~Sie~YiQriGRAGR~G--~~g~~il 700 (1136)
+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ || .|.|+.+|+||+|||||.| ..|.|++
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999999998 76 5899999999999999998 4899999
Q ss_pred EeccccHHH-HHHHHh
Q 001155 701 YYSYSDFIR-VKHMIS 715 (1136)
Q Consensus 701 ~~~~~D~~~-~~~li~ 715 (1136)
+++..+... +.+++.
T Consensus 383 l~~~~~~~~~~~~~~~ 398 (720)
T 2zj8_A 383 VSTSDDPREVMNHYIF 398 (720)
T ss_dssp ECSSSCHHHHHHHHTT
T ss_pred EecCccHHHHHHHHhc
Confidence 999888654 335554
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-37 Score=386.88 Aligned_cols=312 Identities=21% Similarity=0.274 Sum_probs=224.6
Q ss_pred chHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhhHHHHHHHH
Q 001155 377 WTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSLIQDQIMHL 453 (1136)
Q Consensus 377 ~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL~~dqv~~L 453 (1136)
+++.+.+.+++ +||..|+|+|.++++.++.+++++++||||+|||++|.+|++ ..++++|||+|+++|+.|++..+
T Consensus 10 l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 10 ISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred cCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHH
Confidence 55677777766 599999999999999999999999999999999999999987 34789999999999999999998
Q ss_pred HH---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccC
Q 001155 454 LQ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWG 530 (1136)
Q Consensus 454 ~~---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wG 530 (1136)
.. .|+++..++|+....... .+.++|+|+|||+|. .+.+. .......+++|||||||++.+|+
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~~---------~~~~~Iiv~Tpe~l~---~~l~~--~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDEH---------LGDCDIIVTTSEKAD---SLIRN--RASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSSC---------STTCSEEEEEHHHHH---HHHHT--TCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHhcCCEEEEEeCCCCcchhh---------ccCCCEEEECHHHHH---HHHHc--ChhHHhhcCEEEEeeeeecCCCC
Confidence 54 378999999987543321 147899999999994 23332 22224569999999999998765
Q ss_pred CCCccchhh-hhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC----------chh--h-------
Q 001155 531 HDFRPDYQG-LGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP----------NLW--M------- 590 (1136)
Q Consensus 531 hdfR~~y~~-L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~----------nl~--~------- 590 (1136)
+...+.. +..++...++.++++||||+++. .++..+++... +..+.... .+. .
T Consensus 155 --r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~--~~~~~~l~~~~---~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 155 --RGATLEILVTKMRRMNKALRVIGLSATAPNV--TEIAEWLDADY---YVSDWRPVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp --THHHHHHHHHHHHHHCTTCEEEEEECCCTTH--HHHHHHTTCEE---EECCCCSSCEEEEEECSSEEEEEETTEEEEE
T ss_pred --cccHHHHHHHHHHhcCcCceEEEECCCcCCH--HHHHHHhCCCc---ccCCCCCccceEEEeeCCeeeccCcchhhhh
Confidence 3333322 23344445688999999999973 67888886321 11111000 000 0
Q ss_pred ---hHHHHHHHHHh---ccccc-chhhHHHHHHHHh------------------------------hcCCeEEEEcCCCC
Q 001155 591 ---DCEKVAERLQV---GLSYG-HFFLLKEFYVVSL------------------------------ECGHKAAFYHGSID 633 (1136)
Q Consensus 591 ---~~e~lae~L~~---~l~~~-~~~~~~~~~~~l~------------------------------~~g~~v~~~Hagm~ 633 (1136)
....+.+.+.. .+.+. ...........+. ..+.++.+|||+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 228 RVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp ECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred hhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 11222222221 11111 1111111111111 01245888999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE----cC---CCCCHhHHHHHhcccCCCC--CCcEEEEEecc
Q 001155 634 PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS---LPKSIEGYHQECGRAGRDG--QRSSCVLYYSY 704 (1136)
Q Consensus 634 ~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh----~d---~P~Sie~YiQriGRAGR~G--~~g~~il~~~~ 704 (1136)
.++|..+++.|.+|+++|||||+++++|||+|++++||+ || .|.|+.+|+||+|||||.| ..|.|+++++.
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 999999999999999999999999999999999999998 66 7899999999999999998 48999999999
Q ss_pred ccHHHH
Q 001155 705 SDFIRV 710 (1136)
Q Consensus 705 ~D~~~~ 710 (1136)
.+...+
T Consensus 388 ~~~~~~ 393 (702)
T 2p6r_A 388 RDREIA 393 (702)
T ss_dssp GGHHHH
T ss_pred ccHHHH
Confidence 886543
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.9e-36 Score=375.95 Aligned_cols=319 Identities=20% Similarity=0.291 Sum_probs=223.8
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHH-HHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINA-TMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQD 448 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~-il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~d 448 (1136)
++++++.+.+.+++ +||..|+|+|.++++. +..+++++++||||+|||++|.++++. .++++||++|+++|+.|
T Consensus 12 ~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q 90 (715)
T 2va8_A 12 DLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNE 90 (715)
T ss_dssp GSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred HcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHH
Confidence 34566888888877 5999999999999999 678999999999999999999999873 47899999999999999
Q ss_pred HHHHHHH---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc
Q 001155 449 QIMHLLQ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC 525 (1136)
Q Consensus 449 qv~~L~~---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ 525 (1136)
++..+.. .|+++..++|+....... ...++|+|+|||+|. .+.+. .......+++|||||||+
T Consensus 91 ~~~~~~~~~~~g~~v~~~~G~~~~~~~~---------~~~~~Iiv~Tpe~l~---~~~~~--~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 91 KYLTFKDWELIGFKVAMTSGDYDTDDAW---------LKNYDIIITTYEKLD---SLWRH--RPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp HHHHHGGGGGGTCCEEECCSCSSSCCGG---------GGGCSEEEECHHHHH---HHHHH--CCGGGGGEEEEEECSGGG
T ss_pred HHHHHHHhhcCCCEEEEEeCCCCCchhh---------cCCCCEEEEcHHHHH---HHHhC--ChhHhhccCEEEEechhh
Confidence 9999854 388999999987654321 137899999999994 23332 222345699999999999
Q ss_pred ccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcc--------eE---Eeccc---------CCC
Q 001155 526 VSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVN--------CI---IFRQS---------FNR 585 (1136)
Q Consensus 526 ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~--------~~---i~~~s---------~~r 585 (1136)
+.+++ +.+.+.. +....++.++++||||+++. .++..+++... ++ ++... +..
T Consensus 157 l~~~~--~~~~l~~---i~~~~~~~~ii~lSATl~n~--~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPE--RGPVVES---VTIRAKRRNLLALSATISNY--KQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTT--THHHHHH---HHHHHHTSEEEEEESCCTTH--HHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred cCCcc--cchHHHH---HHHhcccCcEEEEcCCCCCH--HHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCc
Confidence 97654 3333322 23333378999999999874 67788886421 00 00000 000
Q ss_pred ---Cch---hhhHHHHHHHHHh---cccc-cchhhHHHHHHHHhh-----------------------------------
Q 001155 586 ---PNL---WMDCEKVAERLQV---GLSY-GHFFLLKEFYVVSLE----------------------------------- 620 (1136)
Q Consensus 586 ---~nl---~~~~e~lae~L~~---~l~~-~~~~~~~~~~~~l~~----------------------------------- 620 (1136)
..+ ......+.+.+.. .+.+ ........+...+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 000 0001111111111 1111 111111111111111
Q ss_pred -cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE----cC-------CCCCHhHHHHHhcc
Q 001155 621 -CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS-------LPKSIEGYHQECGR 688 (1136)
Q Consensus 621 -~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh----~d-------~P~Sie~YiQriGR 688 (1136)
....+.+|||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ || .|.|..+|+||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 1245899999999999999999999999999999999999999999999999 99 89999999999999
Q ss_pred cCCCCC--CcEEEEEecccc-HH-HHHHHH
Q 001155 689 AGRDGQ--RSSCVLYYSYSD-FI-RVKHMI 714 (1136)
Q Consensus 689 AGR~G~--~g~~il~~~~~D-~~-~~~~li 714 (1136)
|||.|. +|.|+++++..+ +. .+.+++
T Consensus 390 aGR~g~~~~G~~~~l~~~~~~~~~~~~~~l 419 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKEDVDRVFKKYV 419 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGGGHHHHHHHTT
T ss_pred cCCCCCCCCceEEEEeCCchHHHHHHHHHH
Confidence 999984 899999998876 33 344444
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-37 Score=374.06 Aligned_cols=309 Identities=16% Similarity=0.187 Sum_probs=194.8
Q ss_pred cchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC--CcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 376 PWTKKLEANNKKVFGNHSFRPNQREIINATMSG--HDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 376 p~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g--~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
.+.+.+.+.+.+. |+..|+++|.++++.++.+ +++|++||||+|||++|++|++.. .+++|||+|+++|+.
T Consensus 125 ~l~~~~~~~l~~~-g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~ 203 (508)
T 3fho_A 125 XXXXXXXXXXXXX-XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELAR 203 (508)
T ss_dssp ---------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHH
T ss_pred ccccccccccccc-cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHH
Confidence 3445666666665 9999999999999999987 999999999999999999998854 458999999999999
Q ss_pred HHHHHHHHcC----CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 448 DQIMHLLQAN----IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 448 dqv~~L~~~g----I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
|+.+.+.+++ +.+....++...... ....+|+|+||+++. +.+.+. ......+++||||||
T Consensus 204 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~Ivv~T~~~l~--~~l~~~---~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 204 QIMDVVTEMGKYTEVKTAFGIKDSVPKGA----------KIDAQIVIGTPGTVM--DLMKRR---QLDARDIKVFVLDEA 268 (508)
T ss_dssp HHHHHHHHHSTTSSCCEEC--------------------CCCCSEEEECHHHHH--HHHHTT---CSCCTTCCEEEECCH
T ss_pred HHHHHHHHhCCccCeeEEEEeCCcccccc----------cCCCCEEEECHHHHH--HHHHcC---CccccCCCEEEEech
Confidence 9999998863 333333333221110 137899999999985 333221 112355899999999
Q ss_pred ccccc-cCCCCccchhhhhhhhccC-CCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh----------h
Q 001155 524 HCVSQ-WGHDFRPDYQGLGILKQKF-PNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW----------M 590 (1136)
Q Consensus 524 H~ls~-wGhdfR~~y~~L~~l~~~~-p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~----------~ 590 (1136)
|++++ ++ |...+..+ ...+ ++.++++||||+++.+.......+.......... ....+++. .
T Consensus 269 H~~~~~~~--~~~~~~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 343 (508)
T 3fho_A 269 DNMLDQQG--LGDQSMRI---KHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH 343 (508)
T ss_dssp HHHTTC----CHHHHHHH---HHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH
T ss_pred hhhcccCC--cHHHHHHH---HHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH
Confidence 99976 44 55544433 3333 4788999999999877665555543322221111 11111111 1
Q ss_pred hHHHHHHHHHh------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC
Q 001155 591 DCEKVAERLQV------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664 (1136)
Q Consensus 591 ~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl 664 (1136)
....+.+.+.. +++.........+...+...++.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+
T Consensus 344 k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDi 423 (508)
T 3fho_A 344 KYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDV 423 (508)
T ss_dssp HHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCC
T ss_pred HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCc
Confidence 12222222221 223333445566777777889999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCC------CCHhHHHHHhcccCCCCCCcEEEEEeccc
Q 001155 665 PDVRFVIHHSLP------KSIEGYHQECGRAGRDGQRSSCVLYYSYS 705 (1136)
Q Consensus 665 P~V~~VIh~d~P------~Sie~YiQriGRAGR~G~~g~~il~~~~~ 705 (1136)
|++++||++++| .|+..|+||+|||||.|+.|.|++|+...
T Consensus 424 p~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 424 SQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp TTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred cCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999 88999999999999999999999999753
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1e-35 Score=358.62 Aligned_cols=307 Identities=16% Similarity=0.157 Sum_probs=163.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhhHHHHHHHHHHc----C
Q 001155 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMHLLQA----N 457 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL~~dqv~~L~~~----g 457 (1136)
+...|+|+|.++++.++.|+|+++++|||+|||++|++|++.. ++++|||+|+++|+.|+...+.+. +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3457999999999999999999999999999999999999754 778999999999999999999886 8
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccch
Q 001155 458 IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDY 537 (1136)
Q Consensus 458 I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y 537 (1136)
+++..++|+.....+...+.. .++|+|+||++|. +.+... .+.....+++|||||||++.+|+. +....
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~------~~~i~v~T~~~l~--~~~~~~--~~~~~~~~~~vViDEah~~~~~~~-~~~~~ 152 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIE------DSDIIVVTPQILV--NSFEDG--TLTSLSIFTLMIFDECHNTTGNHP-YNVLM 152 (556)
T ss_dssp CCEEECCCC-----CHHHHHH------HCSEEEECHHHHH--HHHHSS--SCCCSTTCSEEEEETGGGCSTTSH-HHHHH
T ss_pred ceEEEEeCCCCcchhHHHhhC------CCCEEEECHHHHH--HHHHhC--cccccccCCEEEEECCcccCCcch-HHHHH
Confidence 999999998865554433332 6899999999985 322211 111345589999999999988762 22211
Q ss_pred hhhh--hhhccCCCCCEEEEeeccchhh----------HHHHHHHhcCcce-------------------EEecccCCCC
Q 001155 538 QGLG--ILKQKFPNTPVLALTATATASV----------KEDVVQALGLVNC-------------------IIFRQSFNRP 586 (1136)
Q Consensus 538 ~~L~--~l~~~~p~~~iv~LSAT~~~~v----------~~dI~~~L~l~~~-------------------~i~~~s~~r~ 586 (1136)
..+. .+....+..++++||||+.... ...+...++.... .........+
T Consensus 153 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
T 4a2p_A 153 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 232 (556)
T ss_dssp HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSC
T ss_pred HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcC
Confidence 1110 1111245688999999995421 1122233321110 0000000000
Q ss_pred chhh----------------------------------------------------------------------------
Q 001155 587 NLWM---------------------------------------------------------------------------- 590 (1136)
Q Consensus 587 nl~~---------------------------------------------------------------------------- 590 (1136)
..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (556)
T 4a2p_A 233 NPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 312 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred ------------------------------------------------------------hHHHHHHHHHh---------
Q 001155 591 ------------------------------------------------------------DCEKVAERLQV--------- 601 (1136)
Q Consensus 591 ------------------------------------------------------------~~e~lae~L~~--------- 601 (1136)
....+.+.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k 392 (556)
T 4a2p_A 313 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 392 (556)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCce
Confidence 00000111110
Q ss_pred -cccccchhhHHHHHHHHhhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCceEEEeeccccccccCCCc
Q 001155 602 -GLSYGHFFLLKEFYVVSLEC------------GHKAAFYHGSIDPAQRAFVQKQWSK-DEINIICATVAFGMGINKPDV 667 (1136)
Q Consensus 602 -~l~~~~~~~~~~~~~~l~~~------------g~~v~~~Hagm~~~dR~~i~~~F~~-g~i~VLVAT~alg~GIDlP~V 667 (1136)
+++.........+...+... |.....+||+|+..+|..+++.|++ |+++|||||+++++|||+|++
T Consensus 393 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v 472 (556)
T 4a2p_A 393 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 472 (556)
T ss_dssp EEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------
T ss_pred EEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhC
Confidence 00111111223333333332 5556677899999999999999999 999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 668 RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 668 ~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
++|||||+|+|+..|+||+|| ||. .+|.+++|++..+...
T Consensus 473 ~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 473 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999999999999 999 8999999999877643
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=381.63 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=218.5
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCC
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNM 467 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~ 467 (1136)
+..|+++|.++|+.++.|+++||+||||+|||++|++|++.. ++++||++|+++|+.|++..+.+....++.++|+.
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~ 261 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDI 261 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcc
Confidence 346999999999999999999999999999999999999854 88999999999999999999999877899999987
Q ss_pred CHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccC
Q 001155 468 EWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF 547 (1136)
Q Consensus 468 ~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~ 547 (1136)
... +..+|+|+||++|. +.+.+. ......+++|||||||++.+|+ |...+..+ +....
T Consensus 262 ~~~-------------~~~~IlV~Tpe~L~--~~L~~~---~~~l~~l~lVVIDEaH~l~d~~--rg~~~e~i--i~~l~ 319 (1108)
T 3l9o_A 262 TIN-------------PDAGCLVMTTEILR--SMLYRG---SEVMREVAWVIFDEVHYMRDKE--RGVVWEET--IILLP 319 (1108)
T ss_dssp BCC-------------CSCSEEEEEHHHHH--HHHHHC---SSHHHHEEEEEEETGGGTTSHH--HHHHHHHH--HHHSC
T ss_pred ccC-------------CCCCEEEeChHHHH--HHHHcC---ccccccCCEEEEhhhhhccccc--hHHHHHHH--HHhcC
Confidence 632 47899999999996 333332 1223458999999999999887 55555443 22233
Q ss_pred CCCCEEEEeeccchhhHHHHHHHhc---CcceEEecccCCCCch------------------------------------
Q 001155 548 PNTPVLALTATATASVKEDVVQALG---LVNCIIFRQSFNRPNL------------------------------------ 588 (1136)
Q Consensus 548 p~~~iv~LSAT~~~~v~~dI~~~L~---l~~~~i~~~s~~r~nl------------------------------------ 588 (1136)
+.+++++||||+++.. ++..+++ .....++.....+..+
T Consensus 320 ~~~qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 320 DKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp TTSEEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred CCceEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 5788999999998763 3333332 1111121111111000
Q ss_pred ----------------------------hhhHHHHHHHHHh-----cccc-cchhhHHHHHHHHhh--------------
Q 001155 589 ----------------------------WMDCEKVAERLQV-----GLSY-GHFFLLKEFYVVSLE-------------- 620 (1136)
Q Consensus 589 ----------------------------~~~~e~lae~L~~-----~l~~-~~~~~~~~~~~~l~~-------------- 620 (1136)
......+...+.. .+.+ ........+...+..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 0000111111111 1111 111111222111111
Q ss_pred -------------------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC
Q 001155 621 -------------------------CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 675 (1136)
Q Consensus 621 -------------------------~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~ 675 (1136)
...++++|||+|++.+|..+++.|.+|.++|||||+++++|||+|++++||+++.
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc
Confidence 1123899999999999999999999999999999999999999999999997776
Q ss_pred C--------CCHhHHHHHhcccCCCC--CCcEEEEEeccc-cHHHHHHHHhcC-cCCCCCCCCC
Q 001155 676 P--------KSIEGYHQECGRAGRDG--QRSSCVLYYSYS-DFIRVKHMISQG-VAEQSPFTPG 727 (1136)
Q Consensus 676 P--------~Sie~YiQriGRAGR~G--~~g~~il~~~~~-D~~~~~~li~~~-~~~es~~~~~ 727 (1136)
| -|+.+|+||+|||||.| ..|.|+++++.. +...+..++... .+..|.+...
T Consensus 558 ~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~ 621 (1108)
T 3l9o_A 558 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLG 621 (1108)
T ss_dssp EESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_pred ccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCc
Confidence 4 37778999999999999 689999999876 455666776543 3444555443
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-35 Score=379.78 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=170.0
Q ss_pred hhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhhHHHHHHHHHHc---
Q 001155 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMHLLQA--- 456 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL~~dqv~~L~~~--- 456 (1136)
.+|+..|+++|.++++.++.|+|++++||||+|||++|++|++.. ++++|||+|+++|+.|++..+.+.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 447889999999999999999999999999999999999999865 678999999999999999999886
Q ss_pred -CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCcc
Q 001155 457 -NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRP 535 (1136)
Q Consensus 457 -gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~ 535 (1136)
++++..++|+.....+...+. ..++|+|+||++|. +.+.+. .+.....+++|||||||++...+. ++.
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~------~~~~IvI~Tp~~L~--~~l~~~--~~~~l~~~~liViDEaH~~~~~~~-~~~ 391 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVI------EDSDIIVVTPQILV--NSFEDG--TLTSLSIFTLMIFDECHNTTGNHP-YNV 391 (936)
T ss_dssp TTCCEEEECCC-----CCHHHH------HHCSEEEECHHHHH--HHHHSS--SCCCGGGCSEEEEETGGGCSTTCH-HHH
T ss_pred cCceEEEEECCcchhhHHHHhc------cCCCEEEecHHHHH--HHHHcC--ccccccCCCEEEEECccccCCCcc-HHH
Confidence 899999999986554433332 26899999999985 333211 111234589999999999976541 222
Q ss_pred chhhhhh--hhccCCCCCEEEEeeccchh----------hHHHHHHHhcCcc-------------------eEEecccCC
Q 001155 536 DYQGLGI--LKQKFPNTPVLALTATATAS----------VKEDVVQALGLVN-------------------CIIFRQSFN 584 (1136)
Q Consensus 536 ~y~~L~~--l~~~~p~~~iv~LSAT~~~~----------v~~dI~~~L~l~~-------------------~~i~~~s~~ 584 (1136)
....+.. +....+..++++||||+... ....+...|+... .........
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 471 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc
Confidence 2211111 11124567899999999531 1112222222210 000000000
Q ss_pred CCchhh--------------------------------------------------------------------------
Q 001155 585 RPNLWM-------------------------------------------------------------------------- 590 (1136)
Q Consensus 585 r~nl~~-------------------------------------------------------------------------- 590 (1136)
.+....
T Consensus 472 ~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 551 (936)
T 4a2w_A 472 IHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (936)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 000000
Q ss_pred --------------------------------------------------------------hHHHHHHHHHhc------
Q 001155 591 --------------------------------------------------------------DCEKVAERLQVG------ 602 (1136)
Q Consensus 591 --------------------------------------------------------------~~e~lae~L~~~------ 602 (1136)
....+.+.|...
T Consensus 552 ~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (936)
T 4a2w_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (936)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCC
Confidence 000000011100
Q ss_pred ----ccccchhhHHHHHHHHhhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCceEEEeeccccccccCC
Q 001155 603 ----LSYGHFFLLKEFYVVSLEC------------GHKAAFYHGSIDPAQRAFVQKQWSK-DEINIICATVAFGMGINKP 665 (1136)
Q Consensus 603 ----l~~~~~~~~~~~~~~l~~~------------g~~v~~~Hagm~~~dR~~i~~~F~~-g~i~VLVAT~alg~GIDlP 665 (1136)
++......+..+...+... |.....+||+|+..+|..+++.|++ |+++|||||+++++|||+|
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CC
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcch
Confidence 0001111223333444333 5566677999999999999999999 9999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHH
Q 001155 666 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFI 708 (1136)
Q Consensus 666 ~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~ 708 (1136)
++++|||||+|+|+..|+||+|| ||. ..|.+++|++..+..
T Consensus 712 ~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999 999 789999999887654
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-35 Score=374.56 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=216.9
Q ss_pred hhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 388 VFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 388 ~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.|+|. |+++|.++++.++.|+++||+||||+|||++|+++++. .++++||++|+++|+.|++..|.+....++.++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgllt 160 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 160 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEEC
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEe
Confidence 35775 99999999999999999999999999999999988875 478999999999999999999988755889999
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~ 544 (1136)
|+.... ...+|+|+|||+|. +.+.+ .......+++|||||||++.+|+ +...+..+ +.
T Consensus 161 Gd~~~~-------------~~~~IvV~Tpe~L~--~~L~~---~~~~l~~l~lVViDEaH~l~d~~--rg~~~e~i--l~ 218 (1010)
T 2xgj_A 161 GDITIN-------------PDAGCLVMTTEILR--SMLYR---GSEVMREVAWVIFDEVHYMRDKE--RGVVWEET--II 218 (1010)
T ss_dssp SSCEEC-------------TTCSEEEEEHHHHH--HHHHH---TCTTGGGEEEEEEETGGGGGCTT--THHHHHHH--HH
T ss_pred CCCccC-------------CCCCEEEEcHHHHH--HHHHc---CcchhhcCCEEEEechhhhcccc--hhHHHHHH--HH
Confidence 987542 26789999999985 33322 22234569999999999998876 22223222 12
Q ss_pred ccCCCCCEEEEeeccchhhHHHHHHHhc---CcceEEecccCCCCch---------------------------------
Q 001155 545 QKFPNTPVLALTATATASVKEDVVQALG---LVNCIIFRQSFNRPNL--------------------------------- 588 (1136)
Q Consensus 545 ~~~p~~~iv~LSAT~~~~v~~dI~~~L~---l~~~~i~~~s~~r~nl--------------------------------- 588 (1136)
...+.+++++||||+++. .++..+++ -....++.....+..+
T Consensus 219 ~l~~~~~il~LSATi~n~--~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIPNA--MEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp HSCTTCEEEEEECCCTTH--HHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred hcCCCCeEEEEcCCCCCH--HHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 223478899999999886 33444432 1111111111000000
Q ss_pred -------------------------------hhhHHHHHHHHHh-----ccccc-chhhHHHHHHHHhhc----------
Q 001155 589 -------------------------------WMDCEKVAERLQV-----GLSYG-HFFLLKEFYVVSLEC---------- 621 (1136)
Q Consensus 589 -------------------------------~~~~e~lae~L~~-----~l~~~-~~~~~~~~~~~l~~~---------- 621 (1136)
......+...+.. .+.+. .......+...+...
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~ 376 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEA 376 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHH
Confidence 0001112222211 11111 111111111111111
Q ss_pred -----------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE
Q 001155 622 -----------------------------GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 672 (1136)
Q Consensus 622 -----------------------------g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh 672 (1136)
..++++|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 377 i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~ 456 (1010)
T 2xgj_A 377 LTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT 456 (1010)
T ss_dssp HHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEES
T ss_pred HHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEe
Confidence 124899999999999999999999999999999999999999999999999
Q ss_pred ----cCC----CCCHhHHHHHhcccCCCCC--CcEEEEEeccc-cHHHHHHHHhc
Q 001155 673 ----HSL----PKSIEGYHQECGRAGRDGQ--RSSCVLYYSYS-DFIRVKHMISQ 716 (1136)
Q Consensus 673 ----~d~----P~Sie~YiQriGRAGR~G~--~g~~il~~~~~-D~~~~~~li~~ 716 (1136)
||. |.|+.+|+||+|||||.|. .|.|+++++.. +...+..++..
T Consensus 457 ~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 457 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp CSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred CCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 999 8899999999999999997 69999999866 66677777654
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.1e-35 Score=355.10 Aligned_cols=303 Identities=20% Similarity=0.208 Sum_probs=188.4
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhhHHHHHHHHHHc----CCCe
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMHLLQA----NIPA 460 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL~~dqv~~L~~~----gI~v 460 (1136)
.|+|+|.++++.++.|+|+++++|||+|||++|++|++.. ++++|||+|+++|+.|+...+.+. ++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5899999999999999999999999999999999999754 778999999999999999999886 8999
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
..+.|+.....+...+.. .++|+|+||++|. +.+... .+.....+++|||||||++..++. |+.....
T Consensus 84 ~~~~g~~~~~~~~~~~~~------~~~i~v~T~~~l~--~~~~~~--~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~- 151 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIE------DNDIIILTPQILV--NNLNNG--AIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR- 151 (555)
T ss_dssp EEECTTTGGGSCHHHHHH------HCSEEEECHHHHH--HHHHTS--SSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH-
T ss_pred EEEcCCCcchhhHHHHhc------CCCEEEECHHHHH--HHHhcC--cccccccCCEEEEECccccCCcch-HHHHHHH-
Confidence 999999865544333332 6899999999985 322211 111345589999999999977541 2222211
Q ss_pred hhhhcc-----CCCCCEEEEeeccchhh----------HHHHHHHhcCcceEEec-------ccCCCCc-----------
Q 001155 541 GILKQK-----FPNTPVLALTATATASV----------KEDVVQALGLVNCIIFR-------QSFNRPN----------- 587 (1136)
Q Consensus 541 ~~l~~~-----~p~~~iv~LSAT~~~~v----------~~dI~~~L~l~~~~i~~-------~s~~r~n----------- 587 (1136)
.+... .+..++++||||+.... ...+...++........ ....++.
T Consensus 152 -~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 230 (555)
T 3tbk_A 152 -YLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTS 230 (555)
T ss_dssp -HHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSC
T ss_pred -HHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCccc
Confidence 11111 25678999999996532 11223333321110000 0000000
Q ss_pred -hh-----------------------------------------------------------------------------
Q 001155 588 -LW----------------------------------------------------------------------------- 589 (1136)
Q Consensus 588 -l~----------------------------------------------------------------------------- 589 (1136)
.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (555)
T 3tbk_A 231 NTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKY 310 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ------------------------------------------------------------hhHHHHHHHHHh--------
Q 001155 590 ------------------------------------------------------------MDCEKVAERLQV-------- 601 (1136)
Q Consensus 590 ------------------------------------------------------------~~~e~lae~L~~-------- 601 (1136)
...+.+.+.|..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 390 (555)
T 3tbk_A 311 NDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPET 390 (555)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCc
Confidence 000001111110
Q ss_pred -c-ccccchhhHHHHHHHHhhc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCceEEEeeccccccccCCC
Q 001155 602 -G-LSYGHFFLLKEFYVVSLEC------------GHKAAFYHGSIDPAQRAFVQKQWSK-DEINIICATVAFGMGINKPD 666 (1136)
Q Consensus 602 -~-l~~~~~~~~~~~~~~l~~~------------g~~v~~~Hagm~~~dR~~i~~~F~~-g~i~VLVAT~alg~GIDlP~ 666 (1136)
. ++.........+...+... |.....+||+|+..+|..+++.|++ |+++|||||+++++|||+|+
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~ 470 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAE 470 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTS
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcccc
Confidence 0 1111112223333334333 3455666789999999999999999 99999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHHH
Q 001155 667 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIRV 710 (1136)
Q Consensus 667 V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~~ 710 (1136)
+++|||||+|+|+..|+||+|| ||. ..|.+++|++..+....
T Consensus 471 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 471 CNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp CSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 9999999999999999999999 998 89999999998876543
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-34 Score=361.09 Aligned_cols=301 Identities=20% Similarity=0.230 Sum_probs=222.2
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCC------CcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHH
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSG------HDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQI 450 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g------~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv 450 (1136)
.+.+.+.+.+|| .|+++|.++++.++.+ .+++++||||+|||++|++|++.. +.+++|++|+++|+.|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHY 434 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH
Confidence 445556667799 8999999999998864 589999999999999999999864 789999999999999999
Q ss_pred HHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 451 MHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 451 ~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
..+.+. |+++..++|+.....+...+..+.. +.++|+|+||+.+.. ......+++|||||+|++
T Consensus 435 ~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~----------~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVIGTHALIQE----------DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEEECTTHHHH----------CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhh----------hhhccCCceEEecccchh
Confidence 998775 7999999999998887777766654 679999999987731 123456899999999995
Q ss_pred cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEec-ccCCCCchh------hhHHHHHHHH
Q 001155 527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFR-QSFNRPNLW------MDCEKVAERL 599 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~-~s~~r~nl~------~~~e~lae~L 599 (1136)
|...|.. +.......++++||||+.+...... ..+.....++. .+..+..+. .....+.+.+
T Consensus 503 ---g~~qr~~------l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 ---GVKQREA------LMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFV 571 (780)
T ss_dssp --------CC------CCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHH
T ss_pred ---hHHHHHH------HHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHH
Confidence 5444433 2333357889999999987654322 22222222211 111122111 1122333333
Q ss_pred Hhc--------ccccch--------hhHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccc
Q 001155 600 QVG--------LSYGHF--------FLLKEFYVVSLE---CGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGM 660 (1136)
Q Consensus 600 ~~~--------l~~~~~--------~~~~~~~~~l~~---~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~ 660 (1136)
... +.+..+ .....++..+.. .++.+..+||+|+..+|..+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 321 111111 123344455555 3678999999999999999999999999999999999999
Q ss_pred cccCCCccEEEEcCCCC-CHhHHHHHhcccCCCCCCcEEEEEecc
Q 001155 661 GINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSY 704 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~-Sie~YiQriGRAGR~G~~g~~il~~~~ 704 (1136)
|||+|++++||++++|. +...|.||+||+||.|.+|.|++++++
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999999996 789999999999999999999999974
No 33
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-33 Score=327.80 Aligned_cols=298 Identities=21% Similarity=0.251 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHc-CC---CeEEec
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQA-NI---PATFLS 464 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~-gI---~v~~L~ 464 (1136)
.|+|+|.++++.++.+ ++++++|||+|||++++++++.. .+++|||+|+++|+.||.+.+.+. ++ ++..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6899999999999999 99999999999999999998754 789999999999999999999887 66 889999
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh-hhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL-GIL 543 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L-~~l 543 (1136)
|+.......... ...+|+|+||+.+. ..+.. .......+++|||||||++.... .|..+ ..+
T Consensus 88 g~~~~~~~~~~~-------~~~~ivv~T~~~l~--~~~~~---~~~~~~~~~~vIiDEaH~~~~~~-----~~~~~~~~~ 150 (494)
T 1wp9_A 88 GEKSPEERSKAW-------ARAKVIVATPQTIE--NDLLA---GRISLEDVSLIVFDEAHRAVGNY-----AYVFIAREY 150 (494)
T ss_dssp SCSCHHHHHHHH-------HHCSEEEECHHHHH--HHHHT---TSCCTTSCSEEEEETGGGCSTTC-----HHHHHHHHH
T ss_pred CCcchhhhhhhc-------cCCCEEEecHHHHH--HHHhc---CCcchhhceEEEEECCcccCCCC-----cHHHHHHHH
Confidence 988776544332 26789999999985 22221 11234568999999999986421 23332 233
Q ss_pred hccCCCCCEEEEeeccchh--hHHHHHHHhcCcceEEecccC-------CC----------Cchh---------------
Q 001155 544 KQKFPNTPVLALTATATAS--VKEDVVQALGLVNCIIFRQSF-------NR----------PNLW--------------- 589 (1136)
Q Consensus 544 ~~~~p~~~iv~LSAT~~~~--v~~dI~~~L~l~~~~i~~~s~-------~r----------~nl~--------------- 589 (1136)
....+..++++||||+.+. ...++...++........... .. +...
T Consensus 151 ~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999843 233455555543322211000 00 0000
Q ss_pred --------------------------------------------------------------------------------
Q 001155 590 -------------------------------------------------------------------------------- 589 (1136)
Q Consensus 590 -------------------------------------------------------------------------------- 589 (1136)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence
Q ss_pred --------------------------------hhHHHHHHHHHh----------cccccchhhHHHHHHHHhhcCCeEEE
Q 001155 590 --------------------------------MDCEKVAERLQV----------GLSYGHFFLLKEFYVVSLECGHKAAF 627 (1136)
Q Consensus 590 --------------------------------~~~e~lae~L~~----------~l~~~~~~~~~~~~~~l~~~g~~v~~ 627 (1136)
.....+.+.|.. +++......+..+...+...|+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 000111111111 11111223345556666677999999
Q ss_pred EcC--------CCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 628 YHG--------SIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 628 ~Ha--------gm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
+|| +|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|+|+..|+||+||+||.|. |.++
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEE
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EEeccccHHH
Q 001155 700 LYYSYSDFIR 709 (1136)
Q Consensus 700 l~~~~~D~~~ 709 (1136)
.|+...+...
T Consensus 470 ~l~~~~t~ee 479 (494)
T 1wp9_A 470 ILMAKGTRDE 479 (494)
T ss_dssp EEEETTSHHH
T ss_pred EEEecCCHHH
Confidence 9999887653
No 34
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-34 Score=362.28 Aligned_cols=306 Identities=17% Similarity=0.175 Sum_probs=170.0
Q ss_pred HhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhhHHHHHHHHHHc--
Q 001155 387 KVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMHLLQA-- 456 (1136)
Q Consensus 387 ~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL~~dqv~~L~~~-- 456 (1136)
..+|+..|+|+|.++++.++.|+|+|+++|||+|||++|++|++.. ++++|||+|+++|+.|++..+.+.
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999999999754 789999999999999999999886
Q ss_pred --CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCc
Q 001155 457 --NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFR 534 (1136)
Q Consensus 457 --gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR 534 (1136)
++++..++|+.....+...+. ..++|+|+||++|. +.+.+. .+.....+++|||||||++...+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~------~~~~Ivv~Tp~~l~--~~l~~~--~~~~~~~~~~iViDEaH~~~~~~---- 387 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVI------EDSDIIVVTPQILV--NSFEDG--TLTSLSIFTLMIFDECHNTTGNH---- 387 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHH------HTCSEEEECHHHHH--HHHHSS--SCCCGGGCSEEEETTGGGCSTTS----
T ss_pred cCCceEEEEeCCcchhhhHHHhh------CCCCEEEEchHHHH--HHHHhc--cccccccCCEEEEECccccCCCc----
Confidence 899999999986655443333 27899999999985 333211 11134558999999999987533
Q ss_pred cchhhhh-hhhc-----cCCCCCEEEEeeccchh----------hHHHHHHHhcCc-------------------ceEEe
Q 001155 535 PDYQGLG-ILKQ-----KFPNTPVLALTATATAS----------VKEDVVQALGLV-------------------NCIIF 579 (1136)
Q Consensus 535 ~~y~~L~-~l~~-----~~p~~~iv~LSAT~~~~----------v~~dI~~~L~l~-------------------~~~i~ 579 (1136)
.|..+. .+.. ..+..++++||||+... ....+...++.. .....
T Consensus 388 -~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~ 466 (797)
T 4a2q_A 388 -PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVR 466 (797)
T ss_dssp -HHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEE
T ss_pred -cHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEE
Confidence 233321 1111 24567899999999531 112222233221 10000
Q ss_pred cccCCCCchh-h--------------------------------------------------------------------
Q 001155 580 RQSFNRPNLW-M-------------------------------------------------------------------- 590 (1136)
Q Consensus 580 ~~s~~r~nl~-~-------------------------------------------------------------------- 590 (1136)
......+..+ .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000000000 0
Q ss_pred -------------------------------------------------------------------hHHHHHHHHHh--
Q 001155 591 -------------------------------------------------------------------DCEKVAERLQV-- 601 (1136)
Q Consensus 591 -------------------------------------------------------------------~~e~lae~L~~-- 601 (1136)
....+.+.|..
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00000011110
Q ss_pred -------c-ccccchhhHHHHHHHHhh------------cCCeEEEEcCCCCHHHHHHHHHHHhc-CCceEEEeeccccc
Q 001155 602 -------G-LSYGHFFLLKEFYVVSLE------------CGHKAAFYHGSIDPAQRAFVQKQWSK-DEINIICATVAFGM 660 (1136)
Q Consensus 602 -------~-l~~~~~~~~~~~~~~l~~------------~g~~v~~~Hagm~~~dR~~i~~~F~~-g~i~VLVAT~alg~ 660 (1136)
. ++......+..+...+.. .|.....+||+|+..+|..+++.|++ |+++|||||+++++
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~ 706 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADE 706 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC---
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhc
Confidence 0 011111122333333333 35566778999999999999999999 99999999999999
Q ss_pred cccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 661 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 661 GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
|||+|++++|||||+|+|+..|+||+|| ||. .+|.|++|++..+...
T Consensus 707 GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 707 GIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp ----CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999999999999999999 999 8999999998877643
No 35
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.4e-34 Score=367.34 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
+.+.+.+++.+|| .|+|+|.++++.++.|+|++++||||+|||++|+++++. .++++|||+|+++|+.|++..+.+
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 3455667777899 599999999999999999999999999999999888775 578899999999999999999999
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc----
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ---- 528 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~---- 528 (1136)
.++++..++|+.+..++...+..+.. +.++|+|+||++|. +.+.. .....+++|||||||++.+
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~~~IlV~Tp~rL~--~~l~~-----l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVS--KNREK-----LSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHT--SCCSEEEEEHHHHH--HSHHH-----HHTSCCSEEEESCHHHHTTSSHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEECHHHHH--HHHHh-----hcccCcCEEEEeCCCcccccccc
Confidence 47899999999988555555555543 45999999999995 33321 2334699999999998876
Q ss_pred -------cCCCCccc-hhhhhhhhc-------c--CCCCCEEEEeec-cchhhHHHHHH-HhcCcceEEecccCCCCchh
Q 001155 529 -------WGHDFRPD-YQGLGILKQ-------K--FPNTPVLALTAT-ATASVKEDVVQ-ALGLVNCIIFRQSFNRPNLW 589 (1136)
Q Consensus 529 -------wGhdfR~~-y~~L~~l~~-------~--~p~~~iv~LSAT-~~~~v~~dI~~-~L~l~~~~i~~~s~~r~nl~ 589 (1136)
|| |.+. +..+..... . .++.++++|||| .+..+...+.. .+.+... .......++.
T Consensus 215 ~Dr~L~~~g--f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~---~~~~~~~~i~ 289 (1104)
T 4ddu_A 215 IDTLLMMVG--IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---RLVSVARNIT 289 (1104)
T ss_dssp HHHHHHTSS--CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCC---BCCCCCCCEE
T ss_pred chhhhHhcC--CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEec---cCCCCcCCce
Confidence 55 6766 443322111 1 146789999999 45444433322 3322110 0111111111
Q ss_pred ------hhHHHHHHHHHh-----cccccchhhHHHHHHHHhhcCCeEE-EEcCCCCHHHHHHHHHHHhcCCceEEEe---
Q 001155 590 ------MDCEKVAERLQV-----GLSYGHFFLLKEFYVVSLECGHKAA-FYHGSIDPAQRAFVQKQWSKDEINIICA--- 654 (1136)
Q Consensus 590 ------~~~e~lae~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~-~~Hagm~~~dR~~i~~~F~~g~i~VLVA--- 654 (1136)
.....+.+.+.. +++.........+...+...|+.+. .+|| +|++ ++.|++|+++||||
T Consensus 290 ~~~~~~~k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 290 HVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp EEEESCCCHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETT
T ss_pred eEEEecCHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecC
Confidence 122333333332 2333344456677777778899998 9999 3555 99999999999999
Q ss_pred -eccccccccCCC-ccEEEEcCCCC
Q 001155 655 -TVAFGMGINKPD-VRFVIHHSLPK 677 (1136)
Q Consensus 655 -T~alg~GIDlP~-V~~VIh~d~P~ 677 (1136)
|+++++|||+|+ |++|||||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999999
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.9e-34 Score=373.49 Aligned_cols=309 Identities=15% Similarity=0.149 Sum_probs=220.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLL 454 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~ 454 (1136)
..+.+.+.+.+||. | ++|.++|+.++.|+|++++||||+|||+ |++|++.. ++++|||+||++|+.|+...+.
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 34567778888999 9 9999999999999999999999999998 88888753 6789999999999999999988
Q ss_pred Hc----CC----CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 455 QA----NI----PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 455 ~~----gI----~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
++ ++ .+..++|+.....+......+. .++|+|+||++|. +.+.+ ...+++|||||||++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~----~~~IlV~TP~~L~--~~l~~-------L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR----NFKIVITTTQFLS--KHYRE-------LGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG----GCSEEEEEHHHHH--HCSTT-------SCCCSEEEESCHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhcc----CCCEEEEcHHHHH--HHHHH-------hccCCEEEEeChhhh
Confidence 75 56 8899999988877655554443 3899999999995 32221 346899999999999
Q ss_pred cccCCCCccchhhhhhhhc-----cCCCCCEEEEeeccchhhHH---H-HHHHhcCcceEEecccCCCCchh------hh
Q 001155 527 SQWGHDFRPDYQGLGILKQ-----KFPNTPVLALTATATASVKE---D-VVQALGLVNCIIFRQSFNRPNLW------MD 591 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~-----~~p~~~iv~LSAT~~~~v~~---d-I~~~L~l~~~~i~~~s~~r~nl~------~~ 591 (1136)
++||++++..+..++.... ..+..+++++|||++.. .. . ....+.+... ......+++. ..
T Consensus 188 l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~---~~~~~~~~i~~~~~~~~k 263 (1054)
T 1gku_B 188 LKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG---SSRITVRNVEDVAVNDES 263 (1054)
T ss_dssp HTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS---CCEECCCCEEEEEESCCC
T ss_pred hhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc---CcccCcCCceEEEechhH
Confidence 9999888888776653222 12467899999999987 31 1 1122211100 0000000000 01
Q ss_pred HHHHHHHHHh-----cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEe----eccccccc
Q 001155 592 CEKVAERLQV-----GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICA----TVAFGMGI 662 (1136)
Q Consensus 592 ~e~lae~L~~-----~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVA----T~alg~GI 662 (1136)
...+.+.+.. +++.........+...+... +.+..+||+| ..+++.|++|+++|||| |+++++||
T Consensus 264 ~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGI 337 (1054)
T 1gku_B 264 ISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGL 337 (1054)
T ss_dssp TTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEecc
Confidence 1112233322 22223334455566666566 8999999998 37889999999999999 89999999
Q ss_pred cCCCc-cEEEEcCCC-----------------------------------------------------------------
Q 001155 663 NKPDV-RFVIHHSLP----------------------------------------------------------------- 676 (1136)
Q Consensus 663 DlP~V-~~VIh~d~P----------------------------------------------------------------- 676 (1136)
|+|+| ++|||+++|
T Consensus 338 Dip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 417 (1054)
T 1gku_B 338 DLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 417 (1054)
T ss_dssp CCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEE
T ss_pred ccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEe
Confidence 99995 999999999
Q ss_pred ------CCHhHHHHHhcccCCCCCCc--EEEEEeccccHHHHHHH
Q 001155 677 ------KSIEGYHQECGRAGRDGQRS--SCVLYYSYSDFIRVKHM 713 (1136)
Q Consensus 677 ------~Sie~YiQriGRAGR~G~~g--~~il~~~~~D~~~~~~l 713 (1136)
.++.+|+||+|||||.|..| .+++|+...|...+..+
T Consensus 418 ~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l 462 (1054)
T 1gku_B 418 EGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAF 462 (1054)
T ss_dssp TTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHH
T ss_pred ecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHH
Confidence 79999999999999977664 36666666665554433
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.5e-31 Score=326.90 Aligned_cols=307 Identities=19% Similarity=0.146 Sum_probs=217.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.+.++.++.+|| .++++|..+++.++.|+ |+.|+||+|||++|.||++. .+..++||+|+++|+.+....+..+
T Consensus 71 ~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 71 VVREASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 345566677899 99999999999999998 99999999999999999983 3668999999999998766665443
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH---hhhhhhccceeeeecccccc-c
Q 001155 457 ----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE---SLNARELLARIVIDEAHCVS-Q 528 (1136)
Q Consensus 457 ----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~---~l~~~~~l~lVVIDEAH~ls-~ 528 (1136)
|+++.++.|+++...+... . .++|+|+||++|. .|.+...+. .......+.++||||||.|+ +
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~~~--~------~~dIv~gTpgrlg-fD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiD 218 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKREA--Y------AADITYSTNNELG-FDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILID 218 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHHHH--H------HSSEEEEEHHHHH-HHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTT
T ss_pred HhhcCCeEEEEeCCCCHHHHHHh--c------CCCEEEECchhhh-HHHHHHhhhcchhhhcccCCCEEEECchhhhhhh
Confidence 8999999999886544332 1 6899999999993 155555432 11123468999999999987 5
Q ss_pred cCCCCcc------------chhhhhhhhccCC----------CCC-----------------------------------
Q 001155 529 WGHDFRP------------DYQGLGILKQKFP----------NTP----------------------------------- 551 (1136)
Q Consensus 529 wGhdfR~------------~y~~L~~l~~~~p----------~~~----------------------------------- 551 (1136)
.+ +.| .|..+..+...++ ..+
T Consensus 219 ea--~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~a 296 (844)
T 1tf5_A 219 EA--RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQA 296 (844)
T ss_dssp TT--TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHH
T ss_pred cc--ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHH
Confidence 44 111 1222222222221 122
Q ss_pred -------------------------------------------------------------------------EEEEeec
Q 001155 552 -------------------------------------------------------------------------VLALTAT 558 (1136)
Q Consensus 552 -------------------------------------------------------------------------iv~LSAT 558 (1136)
+.++|+|
T Consensus 297 l~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGT 376 (844)
T 1tf5_A 297 LKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGT 376 (844)
T ss_dssp HHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESC
T ss_pred HHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcc
Confidence 3345555
Q ss_pred cchhhHHHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHH--------hcccccchhhHHHHHHHH
Q 001155 559 ATASVKEDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQ--------VGLSYGHFFLLKEFYVVS 618 (1136)
Q Consensus 559 ~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~--------~~l~~~~~~~~~~~~~~l 618 (1136)
+.... ..+.+..++.-. .-+.++|... .....+.+.+. .+++.........+...+
T Consensus 377 a~te~-~e~~~iY~l~vv---~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L 452 (844)
T 1tf5_A 377 AKTEE-EEFRNIYNMQVV---TIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLL 452 (844)
T ss_dssp CGGGH-HHHHHHHCCCEE---ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHH
T ss_pred cchhH-HHHHHHhCCceE---EecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 54432 333333443211 1122333221 11122233222 123334445566777788
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCC--------CccEEEEcCCCCCHhHHHHHhcccC
Q 001155 619 LECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKP--------DVRFVIHHSLPKSIEGYHQECGRAG 690 (1136)
Q Consensus 619 ~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP--------~V~~VIh~d~P~Sie~YiQriGRAG 690 (1136)
...|+.+..+||++...+|..+.+.|+.| .|+|||+++|||+|++ ++.+||+|++|.|.+.|+||+||+|
T Consensus 453 ~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTG 530 (844)
T 1tf5_A 453 KNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSG 530 (844)
T ss_dssp HTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSS
T ss_pred HHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccc
Confidence 88999999999999988888777777665 6999999999999999 7889999999999999999999999
Q ss_pred CCCCCcEEEEEecccc
Q 001155 691 RDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 691 R~G~~g~~il~~~~~D 706 (1136)
|.|.+|.+++|++..|
T Consensus 531 RqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 531 RQGDPGITQFYLSMED 546 (844)
T ss_dssp GGGCCEEEEEEEETTS
T ss_pred cCCCCCeEEEEecHHH
Confidence 9999999999998776
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.5e-32 Score=329.82 Aligned_cols=288 Identities=16% Similarity=0.124 Sum_probs=211.7
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHHHcC----CCeEEe
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQAN----IPATFL 463 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~g----I~v~~L 463 (1136)
..|+++|.++++.++.++++++++|||+|||++|++++.. ..+++|||+|+++|+.|+++.+.+++ +.+..+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~ 191 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEEC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEE
Confidence 4799999999999999999999999999999999998875 34599999999999999999998862 467888
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGIL 543 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l 543 (1136)
.|+.....+ + .+..+|+|+||+.+... .......+++|||||||++.. ..+ ..+
T Consensus 192 ~~~~~~~~~------~---~~~~~I~i~T~~~l~~~--------~~~~~~~~~liIiDE~H~~~~------~~~---~~i 245 (510)
T 2oca_A 192 GGGASKDDK------Y---KNDAPVVVGTWQTVVKQ--------PKEWFSQFGMMMNDECHLATG------KSI---SSI 245 (510)
T ss_dssp GGGCCTTGG------G---CTTCSEEEEEHHHHTTS--------CGGGGGGEEEEEEETGGGCCH------HHH---HHH
T ss_pred ecCCccccc------c---ccCCcEEEEeHHHHhhc--------hhhhhhcCCEEEEECCcCCCc------ccH---HHH
Confidence 887665443 1 25789999999988532 112334589999999999753 223 333
Q ss_pred hccC-CCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCC-------------------C----------Cchhh---
Q 001155 544 KQKF-PNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFN-------------------R----------PNLWM--- 590 (1136)
Q Consensus 544 ~~~~-p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~-------------------r----------~nl~~--- 590 (1136)
...+ +..++++||||+++.... .....++..+.++..+.. . .....
T Consensus 246 l~~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK 324 (510)
T ss_dssp GGGCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHH
T ss_pred HHhcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHH
Confidence 3333 567899999999776422 111111111111111100 0 01110
Q ss_pred -------hHHHHHHHHHh--------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEee
Q 001155 591 -------DCEKVAERLQV--------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICAT 655 (1136)
Q Consensus 591 -------~~e~lae~L~~--------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT 655 (1136)
..+.+.+.+.. .+.+........+...+...+..+..+||+|+..+|..+++.|.+|+++|||||
T Consensus 325 ~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T 404 (510)
T 2oca_A 325 IITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVAS 404 (510)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 11112222222 223333444556667777777899999999999999999999999999999999
Q ss_pred -ccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 656 -VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 656 -~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
+++++|||+|++++||++++|+|+..|+|++||+||.|..+.++++|+..+
T Consensus 405 ~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 405 YGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp HHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred cChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 999999999999999999999999999999999999999886777776544
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.98 E-value=1.8e-31 Score=347.88 Aligned_cols=309 Identities=20% Similarity=0.183 Sum_probs=231.1
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHC----CC--cEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMS----GH--DVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVS 444 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~----g~--dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtra 444 (1136)
.++....+...+...|||. ++|+|.++++.++. ++ |+|+++|||+|||++|+++++ ..+.+++||+||++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHH
Confidence 3455566677778888997 59999999999986 66 899999999999999998875 34779999999999
Q ss_pred hHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeee
Q 001155 445 LIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVI 520 (1136)
Q Consensus 445 L~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVI 520 (1136)
|+.|++..+.+. ++++..+++......+...+..+.. +..+|+|+||+.+.. ......+++|||
T Consensus 664 La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIvV~T~~ll~~----------~~~~~~l~lvIi 731 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILIGTHKLLQS----------DVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHS----------CCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhC----------CccccccceEEE
Confidence 999999999864 6788999998888777777766654 679999999987631 112356899999
Q ss_pred eccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchh---------h
Q 001155 521 DEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLW---------M 590 (1136)
Q Consensus 521 DEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~---------~ 590 (1136)
||+|++ |... ...+....+++++++||||+.+....... .++....++.. +..+..+. .
T Consensus 732 DEaH~~---g~~~------~~~l~~l~~~~~vl~lSATp~p~~l~~~~--~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~ 800 (1151)
T 2eyq_A 732 DEEHRF---GVRH------KERIKAMRANVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYDSMV 800 (1151)
T ss_dssp ESGGGS---CHHH------HHHHHHHHTTSEEEEEESSCCCHHHHHHH--TTTSEEEECCCCCCBCBCEEEEEEECCHHH
T ss_pred echHhc---ChHH------HHHHHHhcCCCCEEEEcCCCChhhHHHHH--hcCCCceEEecCCCCccccEEEEecCCHHH
Confidence 999994 3211 12233344578899999999887654332 23333332221 22222211 1
Q ss_pred hHHHHHHHHHh----cccccchhhHHHHHHHHhhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccC
Q 001155 591 DCEKVAERLQV----GLSYGHFFLLKEFYVVSLEC--GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINK 664 (1136)
Q Consensus 591 ~~e~lae~L~~----~l~~~~~~~~~~~~~~l~~~--g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDl 664 (1136)
..+.+...+.. .+.+........++..+... ++.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 11222222221 12222333445555555555 7889999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCC-CCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 665 PDVRFVIHHSL-PKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 665 P~V~~VIh~d~-P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
|++++||.++. +.++..|+||+||+||.|+.|.|++++...+
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999998 5699999999999999999999999997653
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=1.1e-31 Score=319.30 Aligned_cols=271 Identities=20% Similarity=0.165 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCC-eEEecCCCCHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIP-ATFLSGNMEWTE 471 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~-v~~L~g~~~~~~ 471 (1136)
.|+|+|.++++.++.++++++++|||+|||++|++++...+.++|||+|+++|+.|+...+.+++++ +..++|+..
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~--- 169 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC---
Confidence 6999999999999999999999999999999999999988999999999999999999999999999 999888764
Q ss_pred HHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCC
Q 001155 472 QQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTP 551 (1136)
Q Consensus 472 ~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~ 551 (1136)
...+|+|+||+.+.. .+ ..+ ...+++|||||||++...+ |+ . +...++..+
T Consensus 170 ------------~~~~Ivv~T~~~l~~--~~----~~~--~~~~~liIvDEaH~~~~~~--~~----~---~~~~~~~~~ 220 (472)
T 2fwr_A 170 ------------ELKPLTVSTYDSAYV--NA----EKL--GNRFMLLIFDEVHHLPAES--YV----Q---IAQMSIAPF 220 (472)
T ss_dssp ------------CCCSEEEEEHHHHHH--TH----HHH--TTTCSEEEEETGGGTTSTT--TH----H---HHHTCCCSE
T ss_pred ------------CcCCEEEEEcHHHHH--HH----HHh--cCCCCEEEEECCcCCCChH--HH----H---HHHhcCCCe
Confidence 256899999998842 11 111 1348999999999987643 32 2 344556788
Q ss_pred EEEEeeccchhh------------------HHHHHHHhcCcceEEec--ccCC-------------------CCc-----
Q 001155 552 VLALTATATASV------------------KEDVVQALGLVNCIIFR--QSFN-------------------RPN----- 587 (1136)
Q Consensus 552 iv~LSAT~~~~v------------------~~dI~~~L~l~~~~i~~--~s~~-------------------r~n----- 587 (1136)
+++||||+.+.. ..++... -+....... .... ..+
T Consensus 221 ~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 221 RLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred EEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcC-cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999997421 1111000 011111100 0000 000
Q ss_pred ---h------------------------------hhhHHHHHHHHHh-----cc-cccchhhHHHHHHHHhhcCCeEEEE
Q 001155 588 ---L------------------------------WMDCEKVAERLQV-----GL-SYGHFFLLKEFYVVSLECGHKAAFY 628 (1136)
Q Consensus 588 ---l------------------------------~~~~e~lae~L~~-----~l-~~~~~~~~~~~~~~l~~~g~~v~~~ 628 (1136)
+ ...+..+.+.+.. .+ +......+..+...+ .+..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l-----~~~~~ 374 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAI 374 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBC
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-----Cccee
Confidence 0 0012223333332 11 111122222222222 36679
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCC-cEEEEE
Q 001155 629 HGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR-SSCVLY 701 (1136)
Q Consensus 629 Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~-g~~il~ 701 (1136)
||+++..+|..+++.|++|+++|||||+++++|||+|++++||+++.|+|+..|+|++||+||.|.. +.+++|
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999954 455443
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=1.7e-31 Score=317.10 Aligned_cols=281 Identities=13% Similarity=0.057 Sum_probs=194.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCcE-EEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 390 GNHSFRPNQREIINATMSGHDV-FVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dv-LV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
|+.+++|+|. +|+.++.++++ +++||||+|||++|++|++. .++++||++|+++|+.|+...+. |+.+....
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR--GLPIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc--Cceeeeee
Confidence 6788999985 79999998886 99999999999999999874 36789999999999999998875 44444333
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~ 544 (1136)
+.... .......|.++|++.+. .. +........+++|||||||++ +++ +.... .+....
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l~--~~----l~~~~~l~~~~~iViDEah~~-~~~--~~~~~-~~~~~~ 136 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATFT--TR----LLSSTRVPNYNLIVMDEAHFT-DPC--SVAAR-GYISTR 136 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHHH--HH----HHHCSCCCCCSEEEEETTTCC-SHH--HHHHH-HHHHHH
T ss_pred ccccc-----------cCCCCceEEEEChHHHH--HH----hhCcccccCCCEEEEeCCccC-Ccc--hHHHH-HHHHHh
Confidence 22211 00135678999999874 22 222233456899999999987 222 11111 111122
Q ss_pred ccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecc-cCCCCchhhhHHHHHHHHHh-cccccchhhHHHHHHHHhhcC
Q 001155 545 QKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQ-SFNRPNLWMDCEKVAERLQV-GLSYGHFFLLKEFYVVSLECG 622 (1136)
Q Consensus 545 ~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~-s~~r~nl~~~~e~lae~L~~-~l~~~~~~~~~~~~~~l~~~g 622 (1136)
...++.++++||||++..+... +......+... .............+.+.-.. +++.........++..+...|
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g 212 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDPF----PQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSG 212 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCSS----CCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTT
T ss_pred hcCCCceEEEEccCCCccchhh----hcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcC
Confidence 3446789999999998864321 11111111111 11100000111111111111 233334445566777777889
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcC--------------------CCCCHhHH
Q 001155 623 HKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHS--------------------LPKSIEGY 682 (1136)
Q Consensus 623 ~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d--------------------~P~Sie~Y 682 (1136)
+.+..+|+.+. ..+++.|++|+++|||||+++++|||+|+ ++||||+ .|.|+.+|
T Consensus 213 ~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y 287 (451)
T 2jlq_A 213 KRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASA 287 (451)
T ss_dssp CCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHH
Confidence 99999999764 57899999999999999999999999999 9999999 99999999
Q ss_pred HHHhcccCCCCC-CcEEEEEec
Q 001155 683 HQECGRAGRDGQ-RSSCVLYYS 703 (1136)
Q Consensus 683 iQriGRAGR~G~-~g~~il~~~ 703 (1136)
+||+|||||.|. +|.|++|+.
T Consensus 288 ~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 288 AQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp HHHHTTSSCCTTCCCEEEEECS
T ss_pred HHhccccCCCCCCCccEEEEeC
Confidence 999999999998 899988864
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=4.6e-29 Score=307.22 Aligned_cols=307 Identities=18% Similarity=0.124 Sum_probs=205.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.+.++.+..+|. .++++|..+++.++.|+ |+.|+||+|||++|.||++. .+..++||+||++|+.+....+..+
T Consensus 62 ~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 62 VVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 455667777896 78999999999999998 99999999999999999984 3668999999999998776666543
Q ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhh-hchHHHHHHHH---hhhhhhccceeeeecccccc-
Q 001155 457 ----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV-AKSDVLLRQLE---SLNARELLARIVIDEAHCVS- 527 (1136)
Q Consensus 457 ----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL-~~~d~l~r~l~---~l~~~~~l~lVVIDEAH~ls- 527 (1136)
|+++.++.|+++...+... . .++|+|+||++| . |.+...+. .......+.++||||||.++
T Consensus 139 ~~~lgl~v~~i~GG~~~~~r~~~--~------~~dIvvgTpgrl~f--DyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 139 FEFLGLTVGINLPGMPAPAKREA--Y------AADITYGTNNEYGF--DYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHH--H------HSSEEEEEHHHHHH--HHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred HHhcCCeEEEEeCCCCHHHHHHh--c------CCCEEEECCchhhH--HHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 8999999999886533322 1 689999999998 3 66554431 11123568999999999997
Q ss_pred ccCCCCcc------------chhhhhhhhccCC---------------------CCCEE---------------------
Q 001155 528 QWGHDFRP------------DYQGLGILKQKFP---------------------NTPVL--------------------- 553 (1136)
Q Consensus 528 ~wGhdfR~------------~y~~L~~l~~~~p---------------------~~~iv--------------------- 553 (1136)
+.| +.| .|..+..+...++ ..+++
T Consensus 209 D~a--~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~ 286 (853)
T 2fsf_A 209 DEA--RTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDE 286 (853)
T ss_dssp TTT--TCEEEEEEC------------------------------------------------------------------
T ss_pred hcC--cccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccc
Confidence 544 211 1222323333222 12221
Q ss_pred ---EEeeccch---hhHH--------------------------------------------------------------
Q 001155 554 ---ALTATATA---SVKE-------------------------------------------------------------- 565 (1136)
Q Consensus 554 ---~LSAT~~~---~v~~-------------------------------------------------------------- 565 (1136)
++|||.+. .+..
T Consensus 287 ~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~ 366 (853)
T 2fsf_A 287 GESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLAS 366 (853)
T ss_dssp ----------------------------------------------------------------------CCCCCEEEEE
T ss_pred cccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccce
Confidence 66777543 1100
Q ss_pred -------------------------HHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh-------
Q 001155 566 -------------------------DVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV------- 601 (1136)
Q Consensus 566 -------------------------dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~------- 601 (1136)
.+.+..++. ++.-+.++|... .....+.+.+..
T Consensus 367 It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~---vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqp 443 (853)
T 2fsf_A 367 ITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD---TVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQP 443 (853)
T ss_dssp EEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCE---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred eehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCc---EEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCC
Confidence 011111110 011122222221 112223333321
Q ss_pred -cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCc-------------
Q 001155 602 -GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV------------- 667 (1136)
Q Consensus 602 -~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V------------- 667 (1136)
++..........+...+...|+.+..+||++...+|..+.+.|+.| .|+|||+++|||+|++..
T Consensus 444 vLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~ 521 (853)
T 2fsf_A 444 VLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENP 521 (853)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSC
T ss_pred EEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccc
Confidence 2233344455667777888999999999999999999999999988 699999999999999974
Q ss_pred ------------------------cEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 668 ------------------------RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 668 ------------------------~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
.+||+|+.|.|...|.|++||+||.|.+|.++.|++..|
T Consensus 522 ~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 522 TAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998877
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.5e-28 Score=302.84 Aligned_cols=311 Identities=15% Similarity=0.091 Sum_probs=217.5
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH-
Q 001155 380 KLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ- 455 (1136)
Q Consensus 380 ~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~- 455 (1136)
.+.++.+..+|+ .++++|..+++.++.|+ |+.|+||+|||++|.||++. .+..++||+|++.|+.+....+..
T Consensus 99 ~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 99 VAREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 456677788899 89999999999999998 99999999999999999974 366899999999999876665544
Q ss_pred ---cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH---hhhhhhccceeeeecccccc-c
Q 001155 456 ---ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE---SLNARELLARIVIDEAHCVS-Q 528 (1136)
Q Consensus 456 ---~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~---~l~~~~~l~lVVIDEAH~ls-~ 528 (1136)
+|+++.++.|+++...+...+ .++|+|+||++|. .|.+...+. .......+.++||||||.|+ +
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~~y--------~~DIvygTpgrlg-fDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiD 246 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRVAY--------NADITYGTNNEFG-FDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILID 246 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHH-HHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTT
T ss_pred HhhcCCeEEEEeCCCCHHHHHHhc--------CCCEEEECchHhh-HHHHHhhhhccHhhhccCCCCEEEEeChHHHHHh
Confidence 399999999998865443321 5799999999982 166655431 11123458999999999987 4
Q ss_pred cCCC----------CccchhhhhhhhccCC----------CCCEE-----------------EEeeccchh---hH----
Q 001155 529 WGHD----------FRPDYQGLGILKQKFP----------NTPVL-----------------ALTATATAS---VK---- 564 (1136)
Q Consensus 529 wGhd----------fR~~y~~L~~l~~~~p----------~~~iv-----------------~LSAT~~~~---v~---- 564 (1136)
.+.. -...|..+..+...++ ..+++ ++|||.+.- +.
T Consensus 247 eartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~ 326 (922)
T 1nkt_A 247 EARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALK 326 (922)
T ss_dssp GGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHH
T ss_pred cCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHH
Confidence 3200 0112333333333333 22333 455654431 11
Q ss_pred --------------------------------------------------------------------------------
Q 001155 565 -------------------------------------------------------------------------------- 564 (1136)
Q Consensus 565 -------------------------------------------------------------------------------- 564 (1136)
T Consensus 327 A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~ 406 (922)
T 1nkt_A 327 AKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQ 406 (922)
T ss_dssp HHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCG
T ss_pred HHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCch
Confidence
Q ss_pred ---HHHHHHhcCcceEEecccCCCCchh------------hhHHHHHHHHHh--------cccccchhhHHHHHHHHhhc
Q 001155 565 ---EDVVQALGLVNCIIFRQSFNRPNLW------------MDCEKVAERLQV--------GLSYGHFFLLKEFYVVSLEC 621 (1136)
Q Consensus 565 ---~dI~~~L~l~~~~i~~~s~~r~nl~------------~~~e~lae~L~~--------~l~~~~~~~~~~~~~~l~~~ 621 (1136)
..+.+..++. ++.-+.++|... .....+.+.+.. ++....+.....+...+...
T Consensus 407 te~~Ef~~iY~l~---vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~ 483 (922)
T 1nkt_A 407 TEAAELHEIYKLG---VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR 483 (922)
T ss_dssp GGHHHHHHHHCCE---EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhCCC---eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC
Confidence 1122222221 111122222211 111222332221 22333444556677778889
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCc----------------------------------
Q 001155 622 GHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDV---------------------------------- 667 (1136)
Q Consensus 622 g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V---------------------------------- 667 (1136)
|+.+..+||++...++..+.+.|+.| .|+|||+++|||+|++.+
T Consensus 484 Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (922)
T 1nkt_A 484 RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELP 561 (922)
T ss_dssp TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 99999999999888888888888888 799999999999999975
Q ss_pred ------------------cEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEeccccH
Q 001155 668 ------------------RFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 668 ------------------~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D~ 707 (1136)
.+||+|+.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 562 ~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 562 IVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998774
No 44
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.96 E-value=6.8e-30 Score=315.49 Aligned_cols=291 Identities=19% Similarity=0.165 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHH
Q 001155 396 PNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEI 475 (1136)
Q Consensus 396 piQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~ 475 (1136)
|.|.......+.+++++++||||+|||+.+ +..+...+.+||++|+++|+.|+++.+.+.|+++..++|+.....
T Consensus 143 p~~~~p~ar~l~rk~vlv~apTGSGKT~~a-l~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv---- 217 (677)
T 3rc3_A 143 PPNWYPDARAMQRKIIFHSGPTNSGKTYHA-IQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTV---- 217 (677)
T ss_dssp GGGGCHHHHTSCCEEEEEECCTTSSHHHHH-HHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECC----
T ss_pred hhhhCHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEe----
Confidence 445544556678999999999999999944 444444566799999999999999999999999999999865310
Q ss_pred HHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccC-CCCCEEE
Q 001155 476 LRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNTPVLA 554 (1136)
Q Consensus 476 l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~-p~~~iv~ 554 (1136)
.......+++++|+|.+. ....+++|||||||++.+.+ |...+..+ +.... +..++++
T Consensus 218 ----~TpGr~~~il~~T~e~~~-------------l~~~v~lvVIDEaH~l~d~~--~g~~~~~~--l~~l~~~~i~il~ 276 (677)
T 3rc3_A 218 ----QPNGKQASHVSCTVEMCS-------------VTTPYEVAVIDEIQMIRDPA--RGWAWTRA--LLGLCAEEVHLCG 276 (677)
T ss_dssp ----STTCCCCSEEEEEGGGCC-------------SSSCEEEEEECSGGGGGCTT--THHHHHHH--HHHCCEEEEEEEE
T ss_pred ----cCCCcccceeEecHhHhh-------------hcccCCEEEEecceecCCcc--chHHHHHH--HHccCccceEEEe
Confidence 000013779999998873 12347999999999997654 44444322 12222 4567888
Q ss_pred EeeccchhhHHHHHHHhcCcceEEecccCCCCchhhhHHHHHHHH-----HhcccccchhhHHHHHHHHhhcCCeEEEEc
Q 001155 555 LTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKVAERL-----QVGLSYGHFFLLKEFYVVSLECGHKAAFYH 629 (1136)
Q Consensus 555 LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~~e~lae~L-----~~~l~~~~~~~~~~~~~~l~~~g~~v~~~H 629 (1136)
+|||.+ ....+....+....+.. +.+.............+ ...+.+.....+..+...+...++.+..+|
T Consensus 277 ~SAT~~--~i~~l~~~~~~~~~v~~---~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 277 EPAAID--LVMELMYTTGEEVEVRD---YKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp CGGGHH--HHHHHHHHHTCCEEEEE---CCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred ccchHH--HHHHHHHhcCCceEEEE---eeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 888842 23444444332221111 11111000000000000 012222223334445555557789999999
Q ss_pred CCCCHHHHHHHHHHHhc--CCceEEEeeccccccccCCCccEEEEcCC--------------CCCHhHHHHHhcccCCCC
Q 001155 630 GSIDPAQRAFVQKQWSK--DEINIICATVAFGMGINKPDVRFVIHHSL--------------PKSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 630 agm~~~dR~~i~~~F~~--g~i~VLVAT~alg~GIDlP~V~~VIh~d~--------------P~Sie~YiQriGRAGR~G 693 (1136)
|+|+.++|..+++.|.+ |.++|||||+++++|||+ ++++||++++ |.|..+|+||+|||||.|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 899999999999999999 8999999999 779999999999999999
Q ss_pred CC---cEEEEEeccccHHHHHHHHhcCcC
Q 001155 694 QR---SSCVLYYSYSDFIRVKHMISQGVA 719 (1136)
Q Consensus 694 ~~---g~~il~~~~~D~~~~~~li~~~~~ 719 (1136)
.. |.|++++ ..+...+.+++....+
T Consensus 431 ~~g~~G~v~~l~-~~d~~~~~~~~~~~~~ 458 (677)
T 3rc3_A 431 SRFKEGEVTTMN-HEDLSLLKEILKRPVD 458 (677)
T ss_dssp SSCSSEEEEESS-TTHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEEEe-cchHHHHHHHHhcCcc
Confidence 64 6665554 4566677777765443
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=1.6e-31 Score=330.49 Aligned_cols=276 Identities=13% Similarity=0.042 Sum_probs=185.6
Q ss_pred CCCHHHH-----HHHHHHH------CCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHcC
Q 001155 393 SFRPNQR-----EIINATM------SGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQAN 457 (1136)
Q Consensus 393 ~lrpiQ~-----eaI~~il------~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~g 457 (1136)
.|+++|. ++|+.++ .++|+|++||||+|||++|++|++.. +.++||++||++|+.|+.+.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8899999 9999888 89999999999999999999998843 5789999999999999999887664
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhc---hHHHHHHHHhhhhhhccceeeeeccccccccCCCCc
Q 001155 458 IPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAK---SDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFR 534 (1136)
Q Consensus 458 I~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~---~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR 534 (1136)
+. ...+.. -.++||+++.. ...+.+.+........+++|||||||++. ..+.
T Consensus 295 i~--~~~~~l--------------------~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VR--YLTPAV--------------------QREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CE--ECCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred ee--eecccc--------------------cccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 43 111110 01566666531 12233333322234669999999999971 1111
Q ss_pred cchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEE-ecccCCCCchhhhHHHHHHHHHh-cccccchhhHH
Q 001155 535 PDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQV-GLSYGHFFLLK 612 (1136)
Q Consensus 535 ~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i-~~~s~~r~nl~~~~e~lae~L~~-~l~~~~~~~~~ 612 (1136)
.....+..+. ..+..++++||||++..+... .....++. +...............+.+.-.. +++........
T Consensus 350 ~~~~~l~~~~-~~~~~~vl~~SAT~~~~i~~~----~~~~~~i~~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~~e 424 (673)
T 2wv9_A 350 AARGYIATRV-EAGEAAAIFMTATPPGTSDPF----PDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKMSN 424 (673)
T ss_dssp HHHHHHHHHH-HTTSCEEEEECSSCTTCCCSS----CCCSSCEEEEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHHHH
T ss_pred HHHHHHHHhc-cccCCcEEEEcCCCChhhhhh----cccCCceEEEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 1111122221 125688999999998774321 11112221 11111111111111111111111 22333344556
Q ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE--------------------
Q 001155 613 EFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH-------------------- 672 (1136)
Q Consensus 613 ~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh-------------------- 672 (1136)
.++..+...++.+..+||. +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 425 ~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 425 EIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 6666677889999999994 899999999999999999999999999999 999998
Q ss_pred cCCCCCHhHHHHHhcccCCC-CCCcEEEEEec
Q 001155 673 HSLPKSIEGYHQECGRAGRD-GQRSSCVLYYS 703 (1136)
Q Consensus 673 ~d~P~Sie~YiQriGRAGR~-G~~g~~il~~~ 703 (1136)
|++|.++++|+||+||+||. |+.|.|++|+.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 67999999999999999999 78999999973
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=6.2e-31 Score=311.35 Aligned_cols=263 Identities=15% Similarity=0.080 Sum_probs=170.7
Q ss_pred HHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHh
Q 001155 405 TMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELN 480 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~ 480 (1136)
+++|+|++++||||+|||++|++|++. .+.++||++||++|+.|+.+.+...++ ....+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v--~~~~~~~------------- 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV--KFHTQAF------------- 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE--EEESSCC-------------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCe--EEecccc-------------
Confidence 467899999999999999999999875 356899999999999999998875543 2222111
Q ss_pred cccCcceEEEeChhhhhc---hHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEee
Q 001155 481 SDYCKYKLLYVTPEKVAK---SDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTA 557 (1136)
Q Consensus 481 ~~~~~~~ILV~TPEkL~~---~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSA 557 (1136)
-.++||+++.. ...+...+........+++|||||||++ +.+ |...+..+..+. ..++.++++|||
T Consensus 70 -------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~-~~~~~~~l~~SA 138 (440)
T 1yks_A 70 -------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRA-RANESATILMTA 138 (440)
T ss_dssp -------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHH-HTTSCEEEEECS
T ss_pred -------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHh-ccCCceEEEEeC
Confidence 04788877752 1222222222223466999999999997 211 222222222222 135688999999
Q ss_pred ccchhhHHHHHHHhcCcceE-EecccCCCCchhhhHHHHHHHHHh-cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHH
Q 001155 558 TATASVKEDVVQALGLVNCI-IFRQSFNRPNLWMDCEKVAERLQV-GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPA 635 (1136)
Q Consensus 558 T~~~~v~~dI~~~L~l~~~~-i~~~s~~r~nl~~~~e~lae~L~~-~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~ 635 (1136)
|+++.+... .....+. .................+.+.-.. +++.........++..+...++.+..+|| +
T Consensus 139 T~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~ 210 (440)
T 1yks_A 139 TPPGTSDEF----PHSNGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----K 210 (440)
T ss_dssp SCTTCCCSS----CCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----S
T ss_pred CCCchhhhh----hhcCCCeeEeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----h
Confidence 998874321 1111111 111111111111111112111111 23333444556666677778999999999 4
Q ss_pred HHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE-------------------cCCCCCHhHHHHHhcccCCC-CCC
Q 001155 636 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH-------------------HSLPKSIEGYHQECGRAGRD-GQR 695 (1136)
Q Consensus 636 dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh-------------------~d~P~Sie~YiQriGRAGR~-G~~ 695 (1136)
+|..+++.|++|+++|||||+++++|||+| +++||| |+.|.++++|+||+||+||. |.+
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 688999999999999999999999999999 999997 89999999999999999998 689
Q ss_pred cEEEEEe
Q 001155 696 SSCVLYY 702 (1136)
Q Consensus 696 g~~il~~ 702 (1136)
|.|++|+
T Consensus 290 g~~~~l~ 296 (440)
T 1yks_A 290 GDSYYYS 296 (440)
T ss_dssp CEEEEEC
T ss_pred ceEEEEe
Confidence 9999997
No 47
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=2.6e-30 Score=317.53 Aligned_cols=281 Identities=12% Similarity=0.039 Sum_probs=190.8
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCC
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGN 466 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~ 466 (1136)
.....|+|+.+++.+++|+|++++||||+|||++|++|++. .+.++|||+|+++|+.|+.+.+. +..+..-...
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~--~~~v~~~~~~ 246 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR--GLPIRYQTPA 246 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEECCTT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc--CCceeEeccc
Confidence 35678888888888899999999999999999999999984 36689999999999999998876 3344321111
Q ss_pred CCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhcc
Q 001155 467 MEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQK 546 (1136)
Q Consensus 467 ~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~ 546 (1136)
... .......+.++|.+.+. +.+........+++|||||||++ +.+ |...+..+.... .
T Consensus 247 l~~-----------~~tp~~~i~~~t~~~l~------~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l-~ 305 (618)
T 2whx_A 247 VKS-----------DHTGREIVDLMCHATFT------TRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRV-E 305 (618)
T ss_dssp SSC-----------CCCSSSCEEEEEHHHHH------HHHHHCSSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHH-H
T ss_pred cee-----------ccCCCceEEEEChHHHH------HHHhccccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHh-c
Confidence 000 00123445566666553 22222223456999999999997 322 333333332221 1
Q ss_pred CCCCCEEEEeeccchhhHHHHHHHhcCcceEE-ecccCCCCchhhhHHHHHHHHHh-cccccchhhHHHHHHHHhhcCCe
Q 001155 547 FPNTPVLALTATATASVKEDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERLQV-GLSYGHFFLLKEFYVVSLECGHK 624 (1136)
Q Consensus 547 ~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i-~~~s~~r~nl~~~~e~lae~L~~-~l~~~~~~~~~~~~~~l~~~g~~ 624 (1136)
.++.++++||||++..+.. ........+ ................+.+.-.. +++.........+...+...++.
T Consensus 306 ~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~ 381 (618)
T 2whx_A 306 MGEAAAIFMTATPPGSTDP----FPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKR 381 (618)
T ss_dssp HTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ccCccEEEEECCCchhhhh----hhccCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCc
Confidence 1578999999999887432 111111111 11111111111111111111111 23333444566677777788999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEE--------------------EEcCCCCCHhHHHH
Q 001155 625 AAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV--------------------IHHSLPKSIEGYHQ 684 (1136)
Q Consensus 625 v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~V--------------------Ih~d~P~Sie~YiQ 684 (1136)
+..+||. +|..+++.|++|+++|||||+++++|||+| +++| |+|+.|.|.++|+|
T Consensus 382 v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQ 456 (618)
T 2whx_A 382 VIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQ 456 (618)
T ss_dssp EEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHH
T ss_pred EEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHH
Confidence 9999984 788899999999999999999999999997 8888 78888999999999
Q ss_pred HhcccCCCCC-CcEEEEEec
Q 001155 685 ECGRAGRDGQ-RSSCVLYYS 703 (1136)
Q Consensus 685 riGRAGR~G~-~g~~il~~~ 703 (1136)
|+|||||.|. +|.|++|++
T Consensus 457 R~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 457 RRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp HHTTSSCCTTCCCEEEEECS
T ss_pred hccccCCCCCCCCeEEEEcc
Confidence 9999999975 999999997
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.96 E-value=1.5e-29 Score=317.89 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=211.3
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHC-CCcEEEEccCCChHHHHHHhhhhhC--------CCcEEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMS-GHDVFVLMPTGGGKSLTYQLPALIC--------PGITLV 438 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~-g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LV 438 (1136)
..|. .+++++.+.+.++.. | ..+.+.|+++|..++. +++++++||||+|||+ ++|++.. +..++|
T Consensus 72 ~~f~--~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 72 NPFT--GREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp CTTT--CSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCcc--ccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 3455 456678888888877 5 6788899999988875 6789999999999999 4555421 446999
Q ss_pred EccChhhHHHHHHHHHHc-CCCeEEecCCC-CHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 439 ISPLVSLIQDQIMHLLQA-NIPATFLSGNM-EWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 439 IsPtraL~~dqv~~L~~~-gI~v~~L~g~~-~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
++|+++|+.++...+... ++.+....|.. .... ......+|+|+||+++. ..+.. ......++
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~---------~~~~~~~I~v~T~G~l~--r~l~~----~~~l~~~~ 210 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN---------KTSNKTILKYMTDGMLL--REAME----DHDLSRYS 210 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE---------ECCTTCSEEEEEHHHHH--HHHHH----STTCTTEE
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceecccc---------ccCCCCCEEEECHHHHH--HHHhh----CccccCCC
Confidence 999999999988877553 55443333211 0000 00136789999999985 22222 22355689
Q ss_pred eeeeecccc-ccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC---------
Q 001155 517 RIVIDEAHC-VSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP--------- 586 (1136)
Q Consensus 517 lVVIDEAH~-ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~--------- 586 (1136)
+|||||+|. ..+. ...+..+..+....++.++++||||++.. .+..+++-.. ++.......+
T Consensus 211 ~lIlDEah~R~ld~----d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~~~~-vi~v~gr~~pv~~~~~~~~ 282 (773)
T 2xau_A 211 CIILDEAHERTLAT----DILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFNDAP-LLAVPGRTYPVELYYTPEF 282 (773)
T ss_dssp EEEECSGGGCCHHH----HHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTTSCC-EEECCCCCCCEEEECCSSC
T ss_pred EEEecCccccccch----HHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhcCCC-cccccCcccceEEEEecCC
Confidence 999999996 2220 01122344455556788999999999753 5555554222 2211111111
Q ss_pred --chh-hhHHHHHHHHHh------cccccchhhHHHHHHHHhh-----------cCCeEEEEcCCCCHHHHHHHHHHHh-
Q 001155 587 --NLW-MDCEKVAERLQV------GLSYGHFFLLKEFYVVSLE-----------CGHKAAFYHGSIDPAQRAFVQKQWS- 645 (1136)
Q Consensus 587 --nl~-~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~~-----------~g~~v~~~Hagm~~~dR~~i~~~F~- 645 (1136)
... .....+.+.+.. +++.........+...+.. .++.+..+||+|+.++|..+++.|.
T Consensus 283 ~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 283 QRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred chhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 000 111222222211 1222222233333333322 5788999999999999999999999
Q ss_pred ----cCCceEEEeeccccccccCCCccEEEEcCC------------------CCCHhHHHHHhcccCCCCCCcEEEEEec
Q 001155 646 ----KDEINIICATVAFGMGINKPDVRFVIHHSL------------------PKSIEGYHQECGRAGRDGQRSSCVLYYS 703 (1136)
Q Consensus 646 ----~g~i~VLVAT~alg~GIDlP~V~~VIh~d~------------------P~Sie~YiQriGRAGR~G~~g~~il~~~ 703 (1136)
+|.++|||||+++++|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.||+
T Consensus 363 ~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~ 441 (773)
T 2xau_A 363 SHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYT 441 (773)
T ss_dssp CSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSC
T ss_pred ccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEec
Confidence 999999999999999999999999999888 88999999999999999 8999999998
Q ss_pred cccH
Q 001155 704 YSDF 707 (1136)
Q Consensus 704 ~~D~ 707 (1136)
..++
T Consensus 442 ~~~~ 445 (773)
T 2xau_A 442 EEAF 445 (773)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8776
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=3e-30 Score=315.85 Aligned_cols=274 Identities=18% Similarity=0.064 Sum_probs=190.4
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc-CCCeEEecCCCCHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA-NIPATFLSGNMEWTE 471 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~~~~~~ 471 (1136)
.+++.|.++++.+..+++++++||||+|||++|.+|++..+.++||++|+++|+.|..+.+.+. +..+....|+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~-- 294 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI-- 294 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE--
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec--
Confidence 4566677777777788999999999999999999999988889999999999999988887654 7788777776541
Q ss_pred HHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCC
Q 001155 472 QQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTP 551 (1136)
Q Consensus 472 ~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~ 551 (1136)
....+|+|+||++|.. + .......+++|||||||++.. +|+..+..|...........
T Consensus 295 -----------~~~~~IlV~TPGrLl~-----~---~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~l 352 (666)
T 3o8b_A 295 -----------TTGAPVTYSTYGKFLA-----D---GGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARL 352 (666)
T ss_dssp -----------CCCCSEEEEEHHHHHH-----T---TSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSE
T ss_pred -----------cCCCCEEEECcHHHHh-----C---CCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCce
Confidence 1478999999999731 1 111234589999999998642 25555544433333333334
Q ss_pred EEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchh----hhHHHHHHHHHhcccccchhhHHHHHHHHhhcCCeEEE
Q 001155 552 VLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLW----MDCEKVAERLQVGLSYGHFFLLKEFYVVSLECGHKAAF 627 (1136)
Q Consensus 552 iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~----~~~e~lae~L~~~l~~~~~~~~~~~~~~l~~~g~~v~~ 627 (1136)
++++|||++..+.. .......+...+...... ...+. .+.-+.+++.........++..+...|+.+..
T Consensus 353 lil~SAT~~~~i~~------~~p~i~~v~~~~~~~i~~~~~~~~l~~-~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~ 425 (666)
T 3o8b_A 353 VVLATATPPGSVTV------PHPNIEEVALSNTGEIPFYGKAIPIEA-IRGGRHLIFCHSKKKCDELAAKLSGLGINAVA 425 (666)
T ss_dssp EEEEESSCTTCCCC------CCTTEEEEECBSCSSEEETTEEECGGG-SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEECCCCCccccc------CCcceEEEeecccchhHHHHhhhhhhh-ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 77889999985321 010111111111111000 00000 00001122223334455566666688999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEE----------EcC-----------CCCCHhHHHHHh
Q 001155 628 YHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----------HHS-----------LPKSIEGYHQEC 686 (1136)
Q Consensus 628 ~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VI----------h~d-----------~P~Sie~YiQri 686 (1136)
+||+|++++ |.++..+|||||+++++|||+| +++|| ||| +|.+.++|+||+
T Consensus 426 lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRi 497 (666)
T 3o8b_A 426 YYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRR 497 (666)
T ss_dssp ECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHH
T ss_pred ecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHh
Confidence 999999775 4567779999999999999997 99999 677 899999999999
Q ss_pred cccCCCCCCcEEEEEeccccH
Q 001155 687 GRAGRDGQRSSCVLYYSYSDF 707 (1136)
Q Consensus 687 GRAGR~G~~g~~il~~~~~D~ 707 (1136)
||+|| |.+|. ++||++.|.
T Consensus 498 GRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 498 GRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp TTBCS-SSCEE-EEESCCCCB
T ss_pred ccCCC-CCCCE-EEEEecchh
Confidence 99999 99999 999987764
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=3e-30 Score=307.01 Aligned_cols=266 Identities=15% Similarity=0.105 Sum_probs=178.9
Q ss_pred HHHHCCCcEEEEccCCChHHHHHHhhhhh----CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHH
Q 001155 403 NATMSGHDVFVLMPTGGGKSLTYQLPALI----CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRE 478 (1136)
Q Consensus 403 ~~il~g~dvLV~APTGsGKTl~y~LpaL~----~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~ 478 (1136)
..+..+++++++||||+|||++|++|++. .+.++||++|+++|+.|+...+. |..+....+......
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~~~------- 86 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR--GLPVRYQTSAVQREH------- 86 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT--TSCEEECC--------------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc--CceEeEEecccccCC-------
Confidence 33456889999999999999999999985 46789999999999999998886 455444333221110
Q ss_pred HhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc-----ccccCCCCccchhhhhhhhccCCCCCEE
Q 001155 479 LNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC-----VSQWGHDFRPDYQGLGILKQKFPNTPVL 553 (1136)
Q Consensus 479 l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~-----ls~wGhdfR~~y~~L~~l~~~~p~~~iv 553 (1136)
.+...+.++|.+.+. +.+........+++|||||||+ +..+| |. . .....++.+++
T Consensus 87 ----t~~~~i~~~~~~~l~------~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--~~------~-~~~~~~~~~~i 147 (459)
T 2z83_A 87 ----QGNEIVDVMCHATLT------HRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--YI------A-TKVELGEAAAI 147 (459)
T ss_dssp -----CCCSEEEEEHHHHH------HHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--HH------H-HHHHTTSCEEE
T ss_pred ----CCCcEEEEEchHHHH------HHhhccccccCCcEEEEECCccCCchhhHHHH--HH------H-HHhccCCccEE
Confidence 134456677777653 2222223345689999999998 34443 11 1 11223678999
Q ss_pred EEeeccchhhHHHHHHHhcCcceEEe-cccCCCCchhhhHHHHHHHHHh-cccccchhhHHHHHHHHhhcCCeEEEEcCC
Q 001155 554 ALTATATASVKEDVVQALGLVNCIIF-RQSFNRPNLWMDCEKVAERLQV-GLSYGHFFLLKEFYVVSLECGHKAAFYHGS 631 (1136)
Q Consensus 554 ~LSAT~~~~v~~dI~~~L~l~~~~i~-~~s~~r~nl~~~~e~lae~L~~-~l~~~~~~~~~~~~~~l~~~g~~v~~~Hag 631 (1136)
+||||++..+.. ......++.. .............+.+.+.-.. +++.........+...+...|+.+..+|+.
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred EEEcCCCcchhh----hccCCCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 999999976422 1111222221 1111111111111111111111 233334445566667777889999999995
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEE--------------------cCCCCCHhHHHHHhcccCC
Q 001155 632 IDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------------------HSLPKSIEGYHQECGRAGR 691 (1136)
Q Consensus 632 m~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh--------------------~d~P~Sie~YiQriGRAGR 691 (1136)
+|..+++.|++|+++|||||+++++|||+|+ ++||+ |+.|.|..+|+||+|||||
T Consensus 224 ----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 224 ----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp ----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCC
Confidence 7889999999999999999999999999999 99999 7799999999999999999
Q ss_pred CCC-CcEEEEEeccc
Q 001155 692 DGQ-RSSCVLYYSYS 705 (1136)
Q Consensus 692 ~G~-~g~~il~~~~~ 705 (1136)
.|. +|.|++|+...
T Consensus 299 ~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 299 NPNQVGDEYHYGGAT 313 (459)
T ss_dssp CTTCCCEEEEECSCC
T ss_pred CCCCCCeEEEEEccc
Confidence 997 99999999764
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=4.1e-28 Score=296.93 Aligned_cols=290 Identities=15% Similarity=0.120 Sum_probs=177.5
Q ss_pred CCCHHHHHHHHHHHC----C-CcEEEEccCCChHHHHHHhhhhh------------CCCcEEEEccChhhHHHHH-HHHH
Q 001155 393 SFRPNQREIINATMS----G-HDVFVLMPTGGGKSLTYQLPALI------------CPGITLVISPLVSLIQDQI-MHLL 454 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~----g-~dvLV~APTGsGKTl~y~LpaL~------------~~g~~LVIsPtraL~~dqv-~~L~ 454 (1136)
.+|++|.++++.++. + ++++++||||+|||++++..+.. ..+++|||+|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999875 4 56999999999999997655432 3578999999999999998 7788
Q ss_pred HcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHH-HHHhhhhhhccceeeeeccccccccCCCC
Q 001155 455 QANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLR-QLESLNARELLARIVIDEAHCVSQWGHDF 533 (1136)
Q Consensus 455 ~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r-~l~~l~~~~~l~lVVIDEAH~ls~wGhdf 533 (1136)
.++..+..+.++.. ....+|+|+||++|.. .... .+........+++|||||||++...+
T Consensus 258 ~~~~~~~~~~~~~~--------------~~~~~I~v~T~~~l~~--~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~--- 318 (590)
T 3h1t_A 258 PFGDARHKIEGGKV--------------VKSREIYFAIYQSIAS--DERRPGLYKEFPQDFFDLIIIDECHRGSARD--- 318 (590)
T ss_dssp TTCSSEEECCC--C--------------CSSCSEEEEEGGGC--------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred hcchhhhhhhccCC--------------CCCCcEEEEEhhhhcc--ccccccccccCCCCccCEEEEECCccccccc---
Confidence 77877776664321 1478999999999952 1110 00111112448999999999986532
Q ss_pred ccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCc----------------ceEEec--ccCC-----------
Q 001155 534 RPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLV----------------NCIIFR--QSFN----------- 584 (1136)
Q Consensus 534 R~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~----------------~~~i~~--~s~~----------- 584 (1136)
+..+..+...++..++++||||+......+....++.. +..+.. ....
T Consensus 319 ---~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 319 ---NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp ------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred ---hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 12334455667778899999998876555444444321 111111 0000
Q ss_pred -------------CCchh------hhHHH----HHHHHHh-------cccccchhhHHHHHHHHhhcC--------CeEE
Q 001155 585 -------------RPNLW------MDCEK----VAERLQV-------GLSYGHFFLLKEFYVVSLECG--------HKAA 626 (1136)
Q Consensus 585 -------------r~nl~------~~~e~----lae~L~~-------~l~~~~~~~~~~~~~~l~~~g--------~~v~ 626 (1136)
...+. ..... +.+.+.. +++.........+...+...+ ..+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 00000 01112 2222221 122223333444444443332 2377
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCce---EEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCC--CcEEEEE
Q 001155 627 FYHGSIDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ--RSSCVLY 701 (1136)
Q Consensus 627 ~~Hagm~~~dR~~i~~~F~~g~i~---VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~--~g~~il~ 701 (1136)
.+||.++. +|..+++.|++|+.+ |||||+++++|||+|++++||+++.|+|+..|+||+||+||.+. ....+++
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 88998763 799999999998866 88999999999999999999999999999999999999999875 3344444
Q ss_pred eccc
Q 001155 702 YSYS 705 (1136)
Q Consensus 702 ~~~~ 705 (1136)
++..
T Consensus 555 ~D~~ 558 (590)
T 3h1t_A 555 IDYT 558 (590)
T ss_dssp EECS
T ss_pred EecC
Confidence 4443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=4e-29 Score=295.10 Aligned_cols=265 Identities=12% Similarity=0.055 Sum_probs=171.3
Q ss_pred CCCcEEEEccCCChHHHHHHhhhh----hCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcc
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPAL----ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSD 482 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~LpaL----~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~ 482 (1136)
.|+++|++||||+|||++|++|++ ..+.++||++||++|+.|+...+. ++.+..+.|......
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~~~----------- 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQSER----------- 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccccC-----------
Confidence 378999999999999999999888 346799999999999998887775 677776666532100
Q ss_pred cCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchh
Q 001155 483 YCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATAS 562 (1136)
Q Consensus 483 ~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~ 562 (1136)
.....+.++|.+.+. +.+........+++|||||+|++..+. ......+..+. ..++.++++||||+++.
T Consensus 68 ~~~~~~~~~~~~~l~------~~l~~~~~~~~l~~vViDEaH~~~~~~---~~~~~~l~~~~-~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFT------MKLLQGVRVPNYNLYIMDEAHFLDPAS---VAARGYIETRV-SMGDAGAIFMTATPPGT 137 (431)
T ss_dssp -CCCSEEEEEHHHHH------HHHHHTCCCCCCSEEEEESTTCCSHHH---HHHHHHHHHHH-HTTSCEEEEEESSCTTC
T ss_pred CCCceEEEEchHHHH------HHHhcCccccCCCEEEEeCCccCCccH---HHHHHHHHHHh-hCCCCcEEEEeCCCCcc
Confidence 024456667777663 222222234568999999999963221 11112222221 23578999999999986
Q ss_pred hHHHHHHHhcCcceEE-ecccCCCCchhhhHHHHHHHH-HhcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHH
Q 001155 563 VKEDVVQALGLVNCII-FRQSFNRPNLWMDCEKVAERL-QVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFV 640 (1136)
Q Consensus 563 v~~dI~~~L~l~~~~i-~~~s~~r~nl~~~~e~lae~L-~~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i 640 (1136)
+.. ......++. +.............+.+.+.- +.+++.........++..+...++.+..+||+ +|..+
T Consensus 138 ~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~ 209 (431)
T 2v6i_A 138 TEA----FPPSNSPIIDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESE 209 (431)
T ss_dssp CCS----SCCCSSCCEEEECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHH
T ss_pred hhh----hcCCCCceeeccccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHH
Confidence 321 111111111 111111111111111111110 11223333344556666666779999999997 57889
Q ss_pred HHHHhcCCceEEEeeccccccccCCCccE-----------------EEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEec
Q 001155 641 QKQWSKDEINIICATVAFGMGINKPDVRF-----------------VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 703 (1136)
Q Consensus 641 ~~~F~~g~i~VLVAT~alg~GIDlP~V~~-----------------VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~ 703 (1136)
++.|++|+++|||||+++++|||+| +.+ ||+++.|.++.+|+||+||+||.|..+.|+++|.
T Consensus 210 ~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 210 YPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp TTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred HHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999999999999999999999999 544 6889999999999999999999997555555553
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.95 E-value=2.7e-27 Score=304.55 Aligned_cols=316 Identities=18% Similarity=0.175 Sum_probs=208.0
Q ss_pred CCCCHHHHHHHHHHHC--CCcEEEEccCCChHHHHHHhhhhh---C--CCcEEEEccChhhHHHHHHHH-HHcCCCeEEe
Q 001155 392 HSFRPNQREIINATMS--GHDVFVLMPTGGGKSLTYQLPALI---C--PGITLVISPLVSLIQDQIMHL-LQANIPATFL 463 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~y~LpaL~---~--~g~~LVIsPtraL~~dqv~~L-~~~gI~v~~L 463 (1136)
..|+|+|.+++..++. +.++|++++||+|||++++..+.. . .+++|||+|+ +|+.||..++ ..+++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 4689999999999885 457999999999999998776643 2 3489999999 9999999999 5568888887
Q ss_pred cCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhh
Q 001155 464 SGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGIL 543 (1136)
Q Consensus 464 ~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l 543 (1136)
.++.... ............+|+|+|++.+.........+ ....+++|||||||++..++......|..+..+
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l----~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 231 DDERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHL----CEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp CHHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHH----HTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred ccchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHh----hhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 6543211 11111122346799999999885321111111 123589999999999966553333335445444
Q ss_pred hccCCCCCEEEEeeccchhhHHHHHHHhcCcc------------------------------------------------
Q 001155 544 KQKFPNTPVLALTATATASVKEDVVQALGLVN------------------------------------------------ 575 (1136)
Q Consensus 544 ~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~------------------------------------------------ 575 (1136)
.. ....+++||||+......++...+.+..
T Consensus 303 ~~--~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 303 AE--HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HT--TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred hh--cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 33 2346999999986422111111110000
Q ss_pred ----------------------------------eEEecc------cCCC------------------------------
Q 001155 576 ----------------------------------CIIFRQ------SFNR------------------------------ 585 (1136)
Q Consensus 576 ----------------------------------~~i~~~------s~~r------------------------------ 585 (1136)
..++.. .+..
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 000000 0000
Q ss_pred ------------------------CchhhhHHHHHHHHHh------cccccchhhHHHHHHHHh-hcCCeEEEEcCCCCH
Q 001155 586 ------------------------PNLWMDCEKVAERLQV------GLSYGHFFLLKEFYVVSL-ECGHKAAFYHGSIDP 634 (1136)
Q Consensus 586 ------------------------~nl~~~~e~lae~L~~------~l~~~~~~~~~~~~~~l~-~~g~~v~~~Hagm~~ 634 (1136)
.........+.+.+.. .++.........+...+. ..|+.+..+||+|+.
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 0000112223333322 112222334455555565 359999999999999
Q ss_pred HHHHHHHHHHhcCC--ceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEec--ccc-HHH
Q 001155 635 AQRAFVQKQWSKDE--INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS--YSD-FIR 709 (1136)
Q Consensus 635 ~dR~~i~~~F~~g~--i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~--~~D-~~~ 709 (1136)
.+|..+++.|++|+ ++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+.+.+++++. ... ...
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~ 620 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSV 620 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHH
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHH
Confidence 99999999999998 9999999999999999999999999999999999999999999999887666642 222 234
Q ss_pred HHHHHhcCc
Q 001155 710 VKHMISQGV 718 (1136)
Q Consensus 710 ~~~li~~~~ 718 (1136)
+..++.+..
T Consensus 621 i~~~~~~k~ 629 (968)
T 3dmq_A 621 LVRWYHEGL 629 (968)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 455554433
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.94 E-value=5.6e-26 Score=271.96 Aligned_cols=283 Identities=18% Similarity=0.171 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhhhC-----CCcEEEEccChhhHHHHHHHHHHc--CCCe
Q 001155 392 HSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMHLLQA--NIPA 460 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL~~-----~g~~LVIsPtraL~~dqv~~L~~~--gI~v 460 (1136)
..|+|+|.+++..+. .++++|++++||+|||++++..+... .+++|||+| .+|+.||.+++.+. ++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998763 57899999999999999876544321 368999999 57999999999887 5677
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhh
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGL 540 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L 540 (1136)
..+.|+.... .....+|+|+||+.+..... + ....+++|||||||++...+ ..+
T Consensus 115 ~~~~g~~~~~-----------~~~~~~ivi~t~~~l~~~~~----l----~~~~~~~vIvDEaH~~kn~~-------~~~ 168 (500)
T 1z63_A 115 AVFHEDRSKI-----------KLEDYDIILTTYAVLLRDTR----L----KEVEWKYIVIDEAQNIKNPQ-------TKI 168 (500)
T ss_dssp EECSSSTTSC-----------CGGGSSEEEEEHHHHTTCHH----H----HTCCEEEEEEETGGGGSCTT-------SHH
T ss_pred EEEecCchhc-----------cccCCcEEEeeHHHHhccch----h----cCCCcCEEEEeCccccCCHh-------HHH
Confidence 7777765320 11468899999999964211 1 12347999999999985432 111
Q ss_pred hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCc----------------------------------ceEEecccC---
Q 001155 541 GILKQKFPNTPVLALTATATASVKEDVVQALGLV----------------------------------NCIIFRQSF--- 583 (1136)
Q Consensus 541 ~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~----------------------------------~~~i~~~s~--- 583 (1136)
......++...+++||||+......++...+.+. .+.+++...
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred HHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 2222334556789999999765444443322110 011111000
Q ss_pred ----CCCch----------------hh--------------------------------------------------hHH
Q 001155 584 ----NRPNL----------------WM--------------------------------------------------DCE 593 (1136)
Q Consensus 584 ----~r~nl----------------~~--------------------------------------------------~~e 593 (1136)
..|.. +. ...
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~ 328 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMI 328 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHH
T ss_pred chhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHH
Confidence 00000 00 000
Q ss_pred HHHHHHHhc-------c-cccchhhHHHHHHHHhh-cCCeEEEEcCCCCHHHHHHHHHHHhcC-Cce-EEEeeccccccc
Q 001155 594 KVAERLQVG-------L-SYGHFFLLKEFYVVSLE-CGHKAAFYHGSIDPAQRAFVQKQWSKD-EIN-IICATVAFGMGI 662 (1136)
Q Consensus 594 ~lae~L~~~-------l-~~~~~~~~~~~~~~l~~-~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~-VLVAT~alg~GI 662 (1136)
.+.+.+... + +.........+...+.. .|+.+..+||+|+..+|..+++.|++| .++ +||+|.++++||
T Consensus 329 ~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gl 408 (500)
T 1z63_A 329 RTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI 408 (500)
T ss_dssp HHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCC
T ss_pred HHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCC
Confidence 111111111 1 11111223334444444 388999999999999999999999998 565 789999999999
Q ss_pred cCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEE
Q 001155 663 NKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 663 DlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~ 701 (1136)
|+|++++||+||+|+|+..|.|++||++|.|+...+.++
T Consensus 409 nl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 409 NLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred chhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 999999999999999999999999999999987666443
No 55
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.94 E-value=8.2e-26 Score=245.62 Aligned_cols=183 Identities=22% Similarity=0.260 Sum_probs=151.3
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC-----------CCcEEEEccC
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPL 442 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~-----------~g~~LVIsPt 442 (1136)
++++.+.+...+++. ||..|+++|.++++.++.|+|++++||||+|||++|++|++.. ++++|||+|+
T Consensus 33 ~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt 111 (242)
T 3fe2_A 33 EANFPANVMDVIARQ-NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 111 (242)
T ss_dssp TTTCCHHHHHHHHTT-TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSS
T ss_pred hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCc
Confidence 456678999988874 9999999999999999999999999999999999999999852 5679999999
Q ss_pred hhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcccee
Q 001155 443 VSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARI 518 (1136)
Q Consensus 443 raL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lV 518 (1136)
++|+.|+.+.+.++ ++.+..+.|+.....+...+.. +++|+|+||++|. +.+.+. ......+++|
T Consensus 112 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~I~v~Tp~~l~--~~l~~~---~~~~~~~~~l 180 (242)
T 3fe2_A 112 RELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER------GVEICIATPGRLI--DFLECG---KTNLRRTTYL 180 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH------CCSEEEECHHHHH--HHHHHT---SCCCTTCCEE
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC------CCCEEEECHHHHH--HHHHcC---CCCcccccEE
Confidence 99999888877665 8899999999887776665543 7899999999996 444322 1234568999
Q ss_pred eeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 519 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 519 VIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
||||||++.+|| |++.+..+ +....++.++++||||+++.+...+...+.
T Consensus 181 ViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 181 VLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp EETTHHHHHHTT--CHHHHHHH--HTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred EEeCHHHHhhhC--cHHHHHHH--HHhCCccceEEEEEeecCHHHHHHHHHHCC
Confidence 999999999998 88887765 233345788999999999998887777765
No 56
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=246.81 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=148.3
Q ss_pred CCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh----------CCCcEEE
Q 001155 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI----------CPGITLV 438 (1136)
Q Consensus 369 ~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~----------~~g~~LV 438 (1136)
.|..+...+.+.+.+.+++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+.++||
T Consensus 53 ~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3443333478899999987 5999999999999999999999999999999999999999984 3678999
Q ss_pred EccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhc
Q 001155 439 ISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAREL 514 (1136)
Q Consensus 439 IsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~ 514 (1136)
|+|+++|+.|++..+.++ ++.+..+.|+.....+...+.. +++|+|+||++|. +.+.+ ... .....
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~Iiv~Tp~~l~--~~~~~-~~~-~~~~~ 201 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN------GINIIVATPGRLL--DHMQN-TPG-FMYKN 201 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH------CCSEEEECHHHHH--HHHHH-CTT-CCCTT
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC------CCCEEEEcHHHHH--HHHHc-cCC-ccccc
Confidence 999999999999999885 6778888998887666555443 6899999999995 33322 111 12355
Q ss_pred cceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 515 LARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 515 l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
+++|||||||++.+|| |++.+..+.. ...+.+++++||||+++.+.......|.
T Consensus 202 l~~lViDEah~l~~~~--~~~~l~~i~~--~~~~~~q~l~~SAT~~~~v~~~~~~~l~ 255 (262)
T 3ly5_A 202 LQCLVIDEADRILDVG--FEEELKQIIK--LLPTRRQTMLFSATQTRKVEDLARISLK 255 (262)
T ss_dssp CCEEEECSHHHHHHTT--CHHHHHHHHH--HSCSSSEEEEECSSCCHHHHHHHHHHCS
T ss_pred CCEEEEcChHHHhhhh--HHHHHHHHHH--hCCCCCeEEEEEecCCHHHHHHHHHHcC
Confidence 8999999999999998 8877765532 2234678999999999998877666554
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=241.83 Aligned_cols=182 Identities=22% Similarity=0.283 Sum_probs=143.4
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh------------CCCcEEEEccC
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI------------CPGITLVISPL 442 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~------------~~g~~LVIsPt 442 (1136)
+++.+.+.+.+.+. ||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+.++|||+|+
T Consensus 25 ~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 25 FQQYPDLLKSIIRV-GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hccCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 56668888888876 999999999999999999999999999999999999999885 46679999999
Q ss_pred hhhHHHHHHHHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceee
Q 001155 443 VSLIQDQIMHLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519 (1136)
Q Consensus 443 raL~~dqv~~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVV 519 (1136)
++|+.|+.+.+.+. ++.+..+.|+.....+...+. .+++|+|+||++|. +.+.. .......+++||
T Consensus 104 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~Tp~~l~--~~~~~---~~~~~~~~~~lV 172 (228)
T 3iuy_A 104 RELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS------KGVDIIIATPGRLN--DLQMN---NSVNLRSITYLV 172 (228)
T ss_dssp HHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH------SCCSEEEECHHHHH--HHHHT---TCCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHH--HHHHc---CCcCcccceEEE
Confidence 99999999988885 788888888876655444333 37899999999995 32222 122245589999
Q ss_pred eeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 520 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 520 IDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
|||||++.+|| |+..+..+ +....++.++++||||+++.+...+...+.
T Consensus 173 iDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 221 (228)
T 3iuy_A 173 IDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALSYLK 221 (228)
T ss_dssp ECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHTTCS
T ss_pred EECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHHHCC
Confidence 99999999988 88877765 333345789999999999998877665543
No 58
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.7e-24 Score=274.05 Aligned_cols=295 Identities=17% Similarity=0.131 Sum_probs=196.4
Q ss_pred CCCCHHHHHHHHHHH----CCCcEEEEccCCChHHHHHHhhhhh------CCCcEEEEccChhhHHHHHHHHHHc--CCC
Q 001155 392 HSFRPNQREIINATM----SGHDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMHLLQA--NIP 459 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il----~g~dvLV~APTGsGKTl~y~LpaL~------~~g~~LVIsPtraL~~dqv~~L~~~--gI~ 459 (1136)
..|+|+|.+++..++ .++++|++.+||.|||+.++..+.. ..+.+|||+| .+|+.+|..++.+. ++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 479999999998776 6889999999999999987655432 2678999999 78899999999886 577
Q ss_pred eEEecCCCCHHHHHHHHHHHh------cccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCC
Q 001155 460 ATFLSGNMEWTEQQEILRELN------SDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDF 533 (1136)
Q Consensus 460 v~~L~g~~~~~~~~~~l~~l~------~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdf 533 (1136)
+..+.|+.............. .....++|+|+|++.+... ...+. ...+++|||||||++...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~---~~~l~----~~~w~~vIvDEaH~lkn~~--- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD---RAELG----SIKWQFMAVDEAHRLKNAE--- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT---HHHHH----TSEEEEEEETTGGGGCCSS---
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh---HHHHh----cCCcceeehhhhhhhcCch---
Confidence 887777654333222111000 1224688999999998531 11111 1247999999999984322
Q ss_pred ccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceE-------------------------------Eeccc
Q 001155 534 RPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCI-------------------------------IFRQS 582 (1136)
Q Consensus 534 R~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~-------------------------------i~~~s 582 (1136)
..+......+.....++||||+-.....++...+.+..+. +++..
T Consensus 384 ----s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~ 459 (800)
T 3mwy_W 384 ----SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL 459 (800)
T ss_dssp ----SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECC
T ss_pred ----hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhh
Confidence 1222333344556689999998555444443333211110 00000
Q ss_pred C-----CCCch----------------h----------------------------------------------------
Q 001155 583 F-----NRPNL----------------W---------------------------------------------------- 589 (1136)
Q Consensus 583 ~-----~r~nl----------------~---------------------------------------------------- 589 (1136)
. ..|.. +
T Consensus 460 k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 539 (800)
T 3mwy_W 460 KKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD 539 (800)
T ss_dssp GGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC--
T ss_pred HHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccc
Confidence 0 00000 0
Q ss_pred ----------------hhHHHHHHHHHh--------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHh
Q 001155 590 ----------------MDCEKVAERLQV--------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWS 645 (1136)
Q Consensus 590 ----------------~~~e~lae~L~~--------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~ 645 (1136)
.....+.+.|.. +++......+..+...+...|+.+..+||+++..+|..+++.|.
T Consensus 540 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~ 619 (800)
T 3mwy_W 540 GKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFN 619 (800)
T ss_dssp --CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTS
T ss_pred ccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 000001111111 11112222344555566677999999999999999999999999
Q ss_pred cCCc---eEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEE
Q 001155 646 KDEI---NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 701 (1136)
Q Consensus 646 ~g~i---~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~ 701 (1136)
++.. .+|++|.+++.|||++.+++||+||+|+|+..+.|++||++|.|+...+.++
T Consensus 620 ~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 620 SPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp STTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 8654 4899999999999999999999999999999999999999999987665544
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.92 E-value=7.5e-23 Score=247.65 Aligned_cols=308 Identities=18% Similarity=0.171 Sum_probs=216.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
..+.++.+..+|+. +++.|....-.+..|+ |+.|.||.|||+++.+|+++. +..+.||+|+..|+.+-...+..
T Consensus 62 AvvREAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 62 ALVREAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HHHHHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHH
Confidence 35667788888875 6899998888888887 999999999999999999843 67799999999999876665544
Q ss_pred ----cCCCeEEecC--------------------------------------------------CCCHHHHHHHHHHHhc
Q 001155 456 ----ANIPATFLSG--------------------------------------------------NMEWTEQQEILRELNS 481 (1136)
Q Consensus 456 ----~gI~v~~L~g--------------------------------------------------~~~~~~~~~~l~~l~~ 481 (1136)
+|+.++++.+ +++..++...+
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY----- 213 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY----- 213 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH-----
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh-----
Confidence 3999998887 23333333333
Q ss_pred ccCcceEEEeChhhhhchHHHHHHHHh-h--hhhhccceeeeecccccc-c-----------------------------
Q 001155 482 DYCKYKLLYVTPEKVAKSDVLLRQLES-L--NARELLARIVIDEAHCVS-Q----------------------------- 528 (1136)
Q Consensus 482 ~~~~~~ILV~TPEkL~~~d~l~r~l~~-l--~~~~~l~lVVIDEAH~ls-~----------------------------- 528 (1136)
.++|+|+|...+. .|.+...+.. . .....+.+.||||+|.|+ +
T Consensus 214 ---~~DItYgTn~Efg-FDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l 289 (822)
T 3jux_A 214 ---LCDVTYGTNNEFG-FDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKF 289 (822)
T ss_dssp ---HSSEEEEEHHHHH-HHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSS
T ss_pred ---cCCCEEccCcchh-hHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhc
Confidence 5789999998874 3555443311 1 112347899999999774 0
Q ss_pred -cCCCCc-------------------------cch----hhh--------------------------------------
Q 001155 529 -WGHDFR-------------------------PDY----QGL-------------------------------------- 540 (1136)
Q Consensus 529 -wGhdfR-------------------------~~y----~~L-------------------------------------- 540 (1136)
-+.+|. ..| ..+
T Consensus 290 ~~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m 369 (822)
T 3jux_A 290 VKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLL 369 (822)
T ss_dssp CBTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCC
T ss_pred CcCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCC
Confidence 000110 000 000
Q ss_pred ---------------------------------hhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCc
Q 001155 541 ---------------------------------GILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPN 587 (1136)
Q Consensus 541 ---------------------------------~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~n 587 (1136)
..+.+.++ .+.|||+|+.... ..+.+.+++. ++.-+.++|.
T Consensus 370 ~grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~--kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~ 443 (822)
T 3jux_A 370 PGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYE--KLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPM 443 (822)
T ss_dssp CSCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSS--EEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCC
T ss_pred CCCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhh--HHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCc
Confidence 00111121 4789999998754 5666777665 2222344443
Q ss_pred hh------------hhHHHHHHHHHh--------cccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 001155 588 LW------------MDCEKVAERLQV--------GLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKD 647 (1136)
Q Consensus 588 l~------------~~~e~lae~L~~--------~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g 647 (1136)
.. .....+.+.+.. ++..........+...+...|+.+..+||++...+|..+...|..|
T Consensus 444 ~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g 523 (822)
T 3jux_A 444 IRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG 523 (822)
T ss_dssp CCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT
T ss_pred ceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC
Confidence 22 112223333321 2333444456667777888999999999997777777777777766
Q ss_pred CceEEEeeccccccccCC--------CccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEEEEecccc
Q 001155 648 EINIICATVAFGMGINKP--------DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 706 (1136)
Q Consensus 648 ~i~VLVAT~alg~GIDlP--------~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~il~~~~~D 706 (1136)
.|+|||+++|||+|++ +..+||++++|.|...|+||+||+||.|.+|.+++|++..|
T Consensus 524 --~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 524 --MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp --CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred --eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 6999999999999998 55699999999999999999999999999999999999887
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.92 E-value=5.3e-25 Score=235.27 Aligned_cols=194 Identities=21% Similarity=0.246 Sum_probs=145.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
++++.+.+.+.+++. ||..|+++|.++++.+++|+|++++||||+|||++|++|++.. +.++|||+|+++|+.
T Consensus 8 ~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 86 (219)
T 1q0u_A 8 RFPFQPFIIEAIKTL-RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELAT 86 (219)
T ss_dssp GSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred hCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHH
Confidence 456778999998774 9999999999999999999999999999999999999999854 468999999999999
Q ss_pred HHHHHHHHc--------CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceee
Q 001155 448 DQIMHLLQA--------NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIV 519 (1136)
Q Consensus 448 dqv~~L~~~--------gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVV 519 (1136)
|+.+.+.+. ++.+..+.|+.........+ ...++|+|+||+++. +.+.+. ......+++||
T Consensus 87 q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~Iiv~Tp~~l~--~~l~~~---~~~~~~~~~lV 155 (219)
T 1q0u_A 87 QIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL------NVQPHIVIGTPGRIN--DFIREQ---ALDVHTAHILV 155 (219)
T ss_dssp HHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC------SSCCSEEEECHHHHH--HHHHTT---CCCGGGCCEEE
T ss_pred HHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc------CCCCCEEEeCHHHHH--HHHHcC---CCCcCcceEEE
Confidence 999988765 57788888876543321111 136889999999995 333221 12235689999
Q ss_pred eeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCC
Q 001155 520 IDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRP 586 (1136)
Q Consensus 520 IDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~ 586 (1136)
|||||++.+|| |...+.. +...++ +.++++||||+++.+.+.+...+. ++..+.....++
T Consensus 156 iDEah~~~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~--~p~~~~~~~~~~ 216 (219)
T 1q0u_A 156 VDEADLMLDMG--FITDVDQ---IAARMPKDLQMLVFSATIPEKLKPFLKKYME--NPTFVHVLEHHH 216 (219)
T ss_dssp ECSHHHHHHTT--CHHHHHH---HHHTSCTTCEEEEEESCCCGGGHHHHHHHCS--SCEEEECC----
T ss_pred EcCchHHhhhC--hHHHHHH---HHHhCCcccEEEEEecCCCHHHHHHHHHHcC--CCeEEEeecccc
Confidence 99999999988 5554443 344443 678999999999998877766653 444444444443
No 61
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=235.58 Aligned_cols=188 Identities=22% Similarity=0.238 Sum_probs=148.7
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|. ++++.+.+.+.+++. ||..|+++|.++++.++.|+|++++||||+|||++|++|++.. ..++|||+|
T Consensus 43 ~~f~--~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~P 119 (249)
T 3ber_A 43 KTFK--DLGVTDVLCEACDQL-GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTP 119 (249)
T ss_dssp CCTG--GGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECS
T ss_pred CCHH--HcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeC
Confidence 4465 456678898888764 9999999999999999999999999999999999999999853 457999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+.|+.+.+.+. ++.+..+.|+.....+...+. ..++|+|+||++|. +.+.+ .. ......+++
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~--~~l~~-~~-~~~l~~~~~ 189 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA------KKPHIIIATPGRLI--DHLEN-TK-GFNLRALKY 189 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH------TCCSEEEECHHHHH--HHHHH-ST-TCCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc------CCCCEEEECHHHHH--HHHHc-CC-CcCccccCE
Confidence 999999999888776 788999999887665544433 37899999999995 33322 11 112345899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
|||||||++.+|+ |+..+..+.. ...++.++++||||+++.+...+...+.
T Consensus 190 lViDEah~l~~~~--~~~~l~~i~~--~~~~~~~~l~~SAT~~~~v~~~~~~~l~ 240 (249)
T 3ber_A 190 LVMDEADRILNMD--FETEVDKILK--VIPRDRKTFLFSATMTKKVQKLQRAALK 240 (249)
T ss_dssp EEECSHHHHHHTT--CHHHHHHHHH--SSCSSSEEEEEESSCCHHHHHHHHHHCS
T ss_pred EEEcChhhhhccC--hHHHHHHHHH--hCCCCCeEEEEeccCCHHHHHHHHHHCC
Confidence 9999999999987 7877765422 2234788999999999998776666553
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=2.1e-24 Score=227.52 Aligned_cols=182 Identities=23% Similarity=0.270 Sum_probs=145.0
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHH
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQ 447 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~ 447 (1136)
++++++.+.+.+.+ +||..|+++|.++++.++.++|++++||||+|||++|++|++.. ..++|||+|+++|+.
T Consensus 7 ~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 85 (206)
T 1vec_A 7 DYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELAL 85 (206)
T ss_dssp GSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHH
T ss_pred hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHH
Confidence 45677999999987 49999999999999999999999999999999999999999854 357999999999999
Q ss_pred HHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeec
Q 001155 448 DQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDE 522 (1136)
Q Consensus 448 dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDE 522 (1136)
|+.+.+.+. ++.+..+.|+.....+...+. ..++|+|+||+++. +.+.+ .......+++|||||
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~--~~~~~---~~~~~~~~~~lViDE 154 (206)
T 1vec_A 86 QVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD------DTVHVVIATPGRIL--DLIKK---GVAKVDHVQMIVLDE 154 (206)
T ss_dssp HHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT------SCCSEEEECHHHHH--HHHHT---TCSCCTTCCEEEEET
T ss_pred HHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC------CCCCEEEeCHHHHH--HHHHc---CCcCcccCCEEEEEC
Confidence 999888775 577888888887665443221 47899999999985 33322 122234689999999
Q ss_pred cccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHHhc
Q 001155 523 AHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 523 AH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
||++.+++ |+..+..+ ...++ +.++++||||++..+...+...++
T Consensus 155 ah~~~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 155 ADKLLSQD--FVQIMEDI---ILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp HHHHTSTT--THHHHHHH---HHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred hHHhHhhC--cHHHHHHH---HHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 99998765 66655443 33444 788999999999998887777654
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.91 E-value=2.7e-24 Score=233.07 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=140.7
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|+ ++++.+.+.+.+++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++.. +.++|||+|
T Consensus 30 ~~f~--~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 30 DNFD--DMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CSGG--GSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CChh--hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3455 44567899998876 49999999999999999999999999999999999999999853 468999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+.|+.+.+.++ ++.+..+.|+.....+...+.. +.++|+|+||+++. +.+.+.. .....+++
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~~Ilv~Tp~~l~--~~l~~~~---~~~~~~~~ 176 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA-----EAPHIVVGTPGRVF--DMLNRRY---LSPKWIKM 176 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC------------------CCCSEEEECHHHHH--HHHHTTS---SCSTTCCE
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhc-----CCCCEEEECHHHHH--HHHHhCC---cCcccCcE
Confidence 999999999999876 5677778887665444333222 35899999999985 4433221 22345899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
|||||||++.+|| |+..+..+ +....+..++++||||+++.+...+..+++
T Consensus 177 lViDEah~~~~~~--~~~~l~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 177 FVLDEADEMLSRG--FKDQIYEI--FQKLNTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp EEEESHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred EEECCchHhhccC--cHHHHHHH--HHhCCCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 9999999999887 66555443 222334788999999999998887777664
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.91 E-value=8.1e-24 Score=222.97 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=145.3
Q ss_pred CCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---------CCcEEEEccChh
Q 001155 374 DFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVS 444 (1136)
Q Consensus 374 ~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---------~g~~LVIsPtra 444 (1136)
++++.+.+.+.+++. ||..|+++|.++++.+++++|+++++|||+|||++|++|++.. +.++|||+|+++
T Consensus 5 ~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 5 DFPLKPEILEALHGR-GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp GSCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHH
T ss_pred hcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHH
Confidence 456778999999875 9999999999999999999999999999999999999998753 467999999999
Q ss_pred hHHHHHHHHHHc--CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeec
Q 001155 445 LIQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDE 522 (1136)
Q Consensus 445 L~~dqv~~L~~~--gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDE 522 (1136)
|+.|+.+.+.+. ++++..+.|+.....+...+.. .++|+|+||+++. +.+.+. ......+++|||||
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~T~~~l~--~~~~~~---~~~~~~~~~iViDE 152 (207)
T 2gxq_A 84 LALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR------GADAVVATPGRAL--DYLRQG---VLDLSRVEVAVLDE 152 (207)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH------CCSEEEECHHHHH--HHHHHT---SSCCTTCSEEEEES
T ss_pred HHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC------CCCEEEECHHHHH--HHHHcC---CcchhhceEEEEEC
Confidence 999999999887 5778888888776555444432 7899999999985 333321 12235589999999
Q ss_pred cccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 523 AHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 523 AH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
||++.+++ |+..+..+ +....++.++++||||+++.+...+...++
T Consensus 153 ah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 198 (207)
T 2gxq_A 153 ADEMLSMG--FEEEVEAL--LSATPPSRQTLLFSATLPSWAKRLAERYMK 198 (207)
T ss_dssp HHHHHHTT--CHHHHHHH--HHTSCTTSEEEEECSSCCHHHHHHHHHHCS
T ss_pred hhHhhccc--hHHHHHHH--HHhCCccCeEEEEEEecCHHHHHHHHHHcC
Confidence 99998877 66665544 222334778999999999987766655543
No 65
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.91 E-value=3.5e-24 Score=231.02 Aligned_cols=184 Identities=15% Similarity=0.224 Sum_probs=144.4
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|. ++++.+.+.+.+++. ||..|+++|.++++.++.|+|++++||||+|||++|++|++.. +.++|||+|
T Consensus 24 ~~f~--~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 24 ADFE--SLLLSRPVLEGLRAA-GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp CCGG--GGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCHh--hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 3455 345668898988774 9999999999999999999999999999999999999999743 468999999
Q ss_pred ChhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 442 LVSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 442 traL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
+++|+.|+.+.+.++ ++++..+.|+.....+...+ ..++|+|+||+++. +.+... ......++
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~--~~~~~~---~~~~~~~~ 168 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIK--QLIELD---YLNPGSIR 168 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHH--HHHHTT---SSCGGGCC
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHH--HHHhcC---CcccccCC
Confidence 999999999999876 67888899988766544332 36899999999995 333221 12235689
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHHH
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQA 570 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~~ 570 (1136)
+|||||||++.+|| .|+..+..+ ...++ ..++++||||+++.+...+..+
T Consensus 169 ~lViDEah~~~~~~-~~~~~~~~i---~~~~~~~~~~l~lSAT~~~~~~~~~~~~ 219 (230)
T 2oxc_A 169 LFILDEADKLLEEG-SFQEQINWI---YSSLPASKQMLAVSATYPEFLANALTKY 219 (230)
T ss_dssp EEEESSHHHHHSTT-SSHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHTTT
T ss_pred EEEeCCchHhhcCc-chHHHHHHH---HHhCCCCCeEEEEEeccCHHHHHHHHHH
Confidence 99999999999987 367666544 33344 6789999999998876655443
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.91 E-value=2.2e-24 Score=235.54 Aligned_cols=183 Identities=19% Similarity=0.236 Sum_probs=141.8
Q ss_pred cchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---------------CCcEEEEc
Q 001155 376 PWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------------PGITLVIS 440 (1136)
Q Consensus 376 p~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---------------~g~~LVIs 440 (1136)
++.+.+.+.+++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++.. .+++|||+
T Consensus 29 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~ 107 (253)
T 1wrb_A 29 KLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 107 (253)
T ss_dssp SCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEE
Confidence 344555555554 49999999999999999999999999999999999999999743 25899999
Q ss_pred cChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccc
Q 001155 441 PLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLA 516 (1136)
Q Consensus 441 PtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~ 516 (1136)
|+++|+.|+.+.+... ++.+..+.|+.....+...+. ..++|+|+||++|. +.+.+. ......++
T Consensus 108 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~Ivv~Tp~~l~--~~l~~~---~~~~~~~~ 176 (253)
T 1wrb_A 108 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQ------MGCHLLVATPGRLV--DFIEKN---KISLEFCK 176 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHS------SCCSEEEECHHHHH--HHHHTT---SBCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhC------CCCCEEEECHHHHH--HHHHcC---CCChhhCC
Confidence 9999999999988775 577888888877665544332 37899999999995 333221 11235589
Q ss_pred eeeeeccccccccCCCCccchhhhhhhhccCC--CCCEEEEeeccchhhHHHHHHHhc
Q 001155 517 RIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP--NTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 517 lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p--~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
+|||||||++.+|| |++.+..+........ +.++++||||+++.+.......+.
T Consensus 177 ~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 177 YIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp EEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred EEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 99999999999988 8887776543222222 578999999999998777776664
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=6.1e-24 Score=226.77 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=145.9
Q ss_pred CCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccC
Q 001155 369 KWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 442 (1136)
Q Consensus 369 ~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPt 442 (1136)
.|. ++++.+.+.+.+.+ +||..|+++|.++++.+++++|++++||||+|||++|++|++.. ..++|||+|+
T Consensus 15 ~f~--~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 15 GFR--DFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp CST--TSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CHh--hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 455 45677999999987 49999999999999999999999999999999999999999854 3489999999
Q ss_pred hhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 443 VSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 443 raL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
++|+.|+.+.+.++ ++++..+.|+.....+...+.. +.++|+|+||+++. +.+.+ .......+++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~~~i~v~T~~~l~--~~~~~---~~~~~~~~~~ 161 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCPHIVVGTPGRIL--ALARN---KSLNLKHIKH 161 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH-----SCCSEEEECHHHHH--HHHHT---TSSCCTTCCE
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc-----CCCCEEEeCHHHHH--HHHHh---CCCCcccCCE
Confidence 99999999988876 6889999999887666555443 46799999999985 33322 1122456899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccC-CCCCEEEEeeccchhhHHHHHHHh
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKF-PNTPVLALTATATASVKEDVVQAL 571 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~-p~~~iv~LSAT~~~~v~~dI~~~L 571 (1136)
|||||||++.++ +.|+..+..+ .... ++.++++||||+++.+...+..++
T Consensus 162 lViDEah~~~~~-~~~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 162 FILDECDKMLEQ-LDMRRDVQEI---FRMTPHEKQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp EEEESHHHHHSS-HHHHHHHHHH---HHTSCSSSEEEEEESCCCTTTHHHHHTTC
T ss_pred EEEcCHHHHhcc-cCcHHHHHHH---HHhCCCcCeEEEEEeecCHHHHHHHHHHc
Confidence 999999999864 1255554443 3333 368899999999998876554443
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.91 E-value=8.1e-24 Score=228.43 Aligned_cols=183 Identities=25% Similarity=0.343 Sum_probs=141.9
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----------CCcEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----------PGITL 437 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----------~g~~L 437 (1136)
..|+ ++++.+.+.+.+++. ||..|+++|.++++.++.|+|++++||||+|||++|++|++.. +.++|
T Consensus 25 ~~f~--~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 25 TRFS--DFPLSKKTLKGLQEA-QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp SBGG--GSCCCHHHHHHHHHT-TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CCHh--hcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 3455 456779999999875 9999999999999999999999999999999999999998842 56899
Q ss_pred EEccChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhh
Q 001155 438 VISPLVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARE 513 (1136)
Q Consensus 438 VIsPtraL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~ 513 (1136)
||+|+++|+.|+.+.+... ++.+..+.|+.....+...+ ..++|+|+||+++. +.+.+. ......
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~--~~l~~~--~~~~~~ 170 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLL--QHMDET--VSFHAT 170 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHH--HHHHHC--SSCCCT
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHH--HHHHhc--CCcccc
Confidence 9999999999999999886 47888888887665544332 37899999999995 333221 011234
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhccCC-CCCEEEEeeccchhhHHHHHH
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-NTPVLALTATATASVKEDVVQ 569 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p-~~~iv~LSAT~~~~v~~dI~~ 569 (1136)
.+++|||||||++.+|| |...+..+ ...++ ..++++||||+++.+......
T Consensus 171 ~~~~lViDEah~~~~~~--~~~~~~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMG--FADTMNAV---IENLPKKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp TCCEEEETTHHHHHHTT--THHHHHHH---HHTSCTTSEEEEEESSCCHHHHHHHHH
T ss_pred cccEEEEeChHHHhcCC--cHHHHHHH---HHhCCCCCeEEEEEeeCCHHHHHHHHH
Confidence 58999999999999988 66655443 33343 677999999999987664433
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=3.1e-23 Score=256.50 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=187.0
Q ss_pred CCCCHHHHHHHHHHH---------CCCcEEEEccCCChHHHHHHhhhhh---C-------CCcEEEEccChhhHHHHHHH
Q 001155 392 HSFRPNQREIINATM---------SGHDVFVLMPTGGGKSLTYQLPALI---C-------PGITLVISPLVSLIQDQIMH 452 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il---------~g~dvLV~APTGsGKTl~y~LpaL~---~-------~g~~LVIsPtraL~~dqv~~ 452 (1136)
..|+|+|.+++..++ .+..+|++.+||.|||+.++..+.. . .+++|||+|+ +|+.+|..+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 369999999999875 3456999999999999987655532 1 2458999997 899999999
Q ss_pred HHHc---CCCeEEecCCCCHHHHHHHHHHHhccc---CcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 453 LLQA---NIPATFLSGNMEWTEQQEILRELNSDY---CKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 453 L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~---~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
+.+. .+.+..+.++.... ....+....... ...+|+|+|++.+.. ....+ ....+++||+||||++
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~------~~~~l-~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDE-IDSKLVNFISQQGMRIPTPILIISYETFRL------HAEVL-HKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHH-HHHHHHHHHCCCSSCCSCCEEEEEHHHHHH------HTTTT-TTSCCCEEEETTGGGC
T ss_pred HHHHcCCCeeEEEEeCCCHHH-HHHHHHHHHHhcCCCCCCcEEEeeHHHHHh------hHHHh-hcCCccEEEEECceec
Confidence 8876 35566666654322 222222222111 247899999998741 11111 2235789999999998
Q ss_pred cccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc----------------------------------
Q 001155 527 SQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG---------------------------------- 572 (1136)
Q Consensus 527 s~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~---------------------------------- 572 (1136)
.... .........+....+++||||+-.+...++...+.
T Consensus 205 kn~~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 205 KNSD-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp CTTC-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred CChh-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 4321 11122223345667899999986543221111110
Q ss_pred -----------------------------CcceE---Eecc-cC-------------------CCCc----hh-------
Q 001155 573 -----------------------------LVNCI---IFRQ-SF-------------------NRPN----LW------- 589 (1136)
Q Consensus 573 -----------------------------l~~~~---i~~~-s~-------------------~r~n----l~------- 589 (1136)
++... ++.. +. .... ..
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 00000 0000 00 0000 00
Q ss_pred h--------------------------------------------hHHHHHHHHH-----h-cccccchhhHHHHHHHHh
Q 001155 590 M--------------------------------------------DCEKVAERLQ-----V-GLSYGHFFLLKEFYVVSL 619 (1136)
Q Consensus 590 ~--------------------------------------------~~e~lae~L~-----~-~l~~~~~~~~~~~~~~l~ 619 (1136)
. ....+.+.+. . +++......+..+...+.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 0 0000001110 0 011111222334445555
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCce---EEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCc
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 696 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~---VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g 696 (1136)
..|+.+..+||+|+..+|..+++.|.+|... +||+|.++++|||++++++||+||+|+++..|.|++||++|.|+..
T Consensus 438 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 438 NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCS
T ss_pred HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCC
Confidence 6789999999999999999999999998754 8999999999999999999999999999999999999999999876
Q ss_pred EEEEE
Q 001155 697 SCVLY 701 (1136)
Q Consensus 697 ~~il~ 701 (1136)
.+.++
T Consensus 518 ~v~v~ 522 (644)
T 1z3i_X 518 TCYIY 522 (644)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 65543
No 70
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.90 E-value=8.6e-24 Score=225.98 Aligned_cols=186 Identities=23% Similarity=0.260 Sum_probs=140.6
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEcc
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 441 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsP 441 (1136)
..|. ++++.+.+.+.+++. ||..|+++|.++++.++.|+|++++||||+|||++|++|++.. .+++|||+|
T Consensus 14 ~~f~--~l~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 14 YKFD--DMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CCGG--GGTCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred CChh--hcCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 3455 455678899988765 9999999999999999999999999999999999999999852 468999999
Q ss_pred ChhhHHHHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccce
Q 001155 442 LVSLIQDQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLAR 517 (1136)
Q Consensus 442 traL~~dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~l 517 (1136)
+++|+.|+.+.+.+. ++.+..+.|+.....+...+ ..++|+|+||+++. +.+.+. ......+++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~--~~~~~~---~~~~~~~~~ 158 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-------RDAQIVVGTPGRVF--DNIQRR---RFRTDKIKM 158 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-------TTCSEEEECHHHHH--HHHHTT---SSCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-------CCCCEEEECHHHHH--HHHHhC---CcchhhCcE
Confidence 999999999988775 67888888887655433221 25899999999985 333221 222355899
Q ss_pred eeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 518 IVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 518 VVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
|||||||++.+|+ |+..+..+.. ...+..++++||||+++.+...+..+++
T Consensus 159 iViDEah~~~~~~--~~~~l~~i~~--~~~~~~~~i~lSAT~~~~~~~~~~~~~~ 209 (224)
T 1qde_A 159 FILDEADEMLSSG--FKEQIYQIFT--LLPPTTQVVLLSATMPNDVLEVTTKFMR 209 (224)
T ss_dssp EEEETHHHHHHTT--CHHHHHHHHH--HSCTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred EEEcChhHHhhhh--hHHHHHHHHH--hCCccCeEEEEEeecCHHHHHHHHHHCC
Confidence 9999999999887 6665554422 2234678999999999998877776654
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=235.08 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=139.2
Q ss_pred CcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh-------CCCcEEEEccChhhHH
Q 001155 375 FPWTKKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI-------CPGITLVISPLVSLIQ 447 (1136)
Q Consensus 375 fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~-------~~g~~LVIsPtraL~~ 447 (1136)
+++.+.+.+.+.+. ||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+.++|||+|+++|+.
T Consensus 34 ~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 34 YKINSRLLQNILDA-GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELAS 112 (245)
T ss_dssp HCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHH
Confidence 46678888888875 999999999999999999999999999999999999999985 2457999999999999
Q ss_pred HHHHHHHHc----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecc
Q 001155 448 DQIMHLLQA----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEA 523 (1136)
Q Consensus 448 dqv~~L~~~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEA 523 (1136)
|+.+.+.+. ++.+..+.|+....... . ......++|+|+||++|. +.+.+. ........+++||||||
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~I~v~Tp~~l~--~~l~~~-~~~~~~~~~~~lViDEa 184 (245)
T 3dkp_A 113 QIHRELIKISEGTGFRIHMIHKAAVAAKKF---G--PKSSKKFDILVTTPNRLI--YLLKQD-PPGIDLASVEWLVVDES 184 (245)
T ss_dssp HHHHHHHHHTTTSCCCEECCCHHHHHHTTT---S--TTSCCCCCEEEECHHHHH--HHHHSS-SCSCCCTTCCEEEESSH
T ss_pred HHHHHHHHHhcccCceEEEEecCccHHHHh---h--hhhcCCCCEEEECHHHHH--HHHHhC-CCCcccccCcEEEEeCh
Confidence 999999886 56666665542211110 0 001247899999999995 333221 10122455899999999
Q ss_pred ccccccC-CCCccchhhhhhhhc-cCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 524 HCVSQWG-HDFRPDYQGLGILKQ-KFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 524 H~ls~wG-hdfR~~y~~L~~l~~-~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
|++.+|| ..|+..+..+ +.. ..++.++++||||+++.+...+...++
T Consensus 185 h~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 185 DKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp HHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred HHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 9999987 3466666544 222 224688999999999988876666654
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=234.58 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=142.6
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHHCC--CcEEEEccCCChHHHHHHhhhhhC------CCcEEEE
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATMSG--HDVFVLMPTGGGKSLTYQLPALIC------PGITLVI 439 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g--~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVI 439 (1136)
..|. ++++.+.+...+.+. ||..|+++|.++|+.++.| +|++++||||+|||++|++|++.. ..++|||
T Consensus 92 ~~f~--~l~l~~~l~~~l~~~-g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 92 KSFE--ELRLKPQLLQGVYAM-GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCSG--GGTCCHHHHHHHHHT-TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCHh--hcCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 3454 456679999999875 9999999999999999987 999999999999999999999854 3479999
Q ss_pred ccChhhHHHHHHHHHHc-----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhc
Q 001155 440 SPLVSLIQDQIMHLLQA-----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAREL 514 (1136)
Q Consensus 440 sPtraL~~dqv~~L~~~-----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~ 514 (1136)
+|+++|+.|+...+..+ ++.+..+.|+....... ....+|+|+||++|. +.+.+. .......
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~IlV~TP~~l~--~~l~~~--~~~~l~~ 235 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KISEQIVIGTPGTVL--DWCSKL--KFIDPKK 235 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---------CCCCSEEEECHHHHH--HHHTTT--CCCCGGG
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---------cCCCCEEEECHHHHH--HHHHhc--CCCChhh
Confidence 99999999988888775 46777777776543221 146799999999985 433221 1112356
Q ss_pred cceeeeeccccccc-cCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 515 LARIVIDEAHCVSQ-WGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 515 l~lVVIDEAH~ls~-wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
+++|||||||++.+ +| |+..+..+. ....+++++++||||+++.+......++.
T Consensus 236 l~~lVlDEad~l~~~~~--~~~~~~~i~--~~~~~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQG--HQDQSIRIQ--RMLPRNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp CSEEEETTHHHHHHSTT--HHHHHHHHH--TTSCTTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred ceEEEEeCHHHHhhccC--cHHHHHHHH--HhCCCCCEEEEEeccCCHHHHHHHHHHCC
Confidence 99999999999987 55 666655442 22234688999999999998887776654
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=3.5e-22 Score=256.45 Aligned_cols=291 Identities=16% Similarity=0.182 Sum_probs=181.7
Q ss_pred CCCHHHHHHHHHHHC--------------CCcEEEEccCCChHHHHHHhhhhhC------CCcEEEEccChhhHHHHHHH
Q 001155 393 SFRPNQREIINATMS--------------GHDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMH 452 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~--------------g~dvLV~APTGsGKTl~y~LpaL~~------~g~~LVIsPtraL~~dqv~~ 452 (1136)
.|||+|.+|++.++. +++++++++||+|||+++ ++++.. ..++|||+|+++|+.|+...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999875 368999999999999997 443321 25899999999999999999
Q ss_pred HHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCC
Q 001155 453 LLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHD 532 (1136)
Q Consensus 453 L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhd 532 (1136)
+..++.. .+.++.+.......+. . ...+|+|+||+++. ..+.. ...+.......+|||||||+... |
T Consensus 350 f~~f~~~--~v~~~~s~~~l~~~L~---~--~~~~IiVtTiqkl~--~~l~~-~~~~~~~~~~~lvIiDEAHrs~~-~-- 416 (1038)
T 2w00_A 350 YQRFSPD--SVNGSENTAGLKRNLD---K--DDNKIIVTTIQKLN--NLMKA-ESDLPVYNQQVVFIFDECHRSQF-G-- 416 (1038)
T ss_dssp HHTTSTT--CSSSSCCCHHHHHHHH---C--SSCCEEEEEHHHHH--HHHHH-CCCCGGGGSCEEEEEESCCTTHH-H--
T ss_pred HHHhccc--ccccccCHHHHHHHhc---C--CCCCEEEEEHHHHH--HHHhc-ccchhccccccEEEEEccchhcc-h--
Confidence 9887532 2333333333332222 1 46899999999995 22221 11111233578999999999632 2
Q ss_pred CccchhhhhhhhccCCCCCEEEEeeccchhhH----HHHHHHhc---------------CcceEE--ecc---cC-----
Q 001155 533 FRPDYQGLGILKQKFPNTPVLALTATATASVK----EDVVQALG---------------LVNCII--FRQ---SF----- 583 (1136)
Q Consensus 533 fR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~----~dI~~~L~---------------l~~~~i--~~~---s~----- 583 (1136)
.. ...+...+|+.++++||||+..... ......++ ..-+.. +.. .+
T Consensus 417 --~~---~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 417 --EA---QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp --HH---HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHT
T ss_pred --HH---HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccc
Confidence 11 2345667888999999999975421 01111111 111111 111 00
Q ss_pred --C--------CCchh---hhHHHHHHHHHh------------------cccccchhhHHHHHHHHhhcC----------
Q 001155 584 --N--------RPNLW---MDCEKVAERLQV------------------GLSYGHFFLLKEFYVVSLECG---------- 622 (1136)
Q Consensus 584 --~--------r~nl~---~~~e~lae~L~~------------------~l~~~~~~~~~~~~~~l~~~g---------- 622 (1136)
. ..... ...+.+++.+.. .+..........++..+...+
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 00000 011222222211 111222233344444443322
Q ss_pred --CeE-EEEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCce
Q 001155 623 --HKA-AFYHGS----------I----------DP-----------------------------AQRAFVQKQWSKDEIN 650 (1136)
Q Consensus 623 --~~v-~~~Hag----------m----------~~-----------------------------~dR~~i~~~F~~g~i~ 650 (1136)
+.+ .++|++ | +. .+|..+.++|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 444 456642 2 22 1488899999999999
Q ss_pred EEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCC----cEEEEEec
Q 001155 651 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR----SSCVLYYS 703 (1136)
Q Consensus 651 VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~----g~~il~~~ 703 (1136)
|||+|+++.+|+|.|.+ .|+.+|.|.+...|+|++||++|.+.. |..+.|.+
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999999999 678899999999999999999998753 54554443
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=3.4e-21 Score=238.74 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=92.5
Q ss_pred chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC-----CCCHhH
Q 001155 607 HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL-----PKSIEG 681 (1136)
Q Consensus 607 ~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~-----P~Sie~ 681 (1136)
.......+...+...|+.+..+||+|+..+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.|..+
T Consensus 448 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~ 527 (664)
T 1c4o_A 448 TVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 527 (664)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHH
T ss_pred CHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHH
Confidence 344556677778888999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 682 YHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 682 YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
|+||+|||||.| .|.|++|++..+...
T Consensus 528 ~iQr~GRagR~~-~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 528 LIQTIGRAARNA-RGEVWLYADRVSEAM 554 (664)
T ss_dssp HHHHHGGGTTST-TCEEEEECSSCCHHH
T ss_pred HHHHHCccCcCC-CCEEEEEEcCCCHHH
Confidence 999999999995 899999998776544
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.82 E-value=2.7e-19 Score=221.60 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=92.9
Q ss_pred chhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCC-----CCCHhH
Q 001155 607 HFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL-----PKSIEG 681 (1136)
Q Consensus 607 ~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~-----P~Sie~ 681 (1136)
.......+...+...|+.+..+||+|+..+|..+++.|+.|+++|||||+++++|+|+|++++||+++. |.|..+
T Consensus 454 t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~ 533 (661)
T 2d7d_A 454 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERS 533 (661)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHH
T ss_pred CHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHH
Confidence 334556677778888999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHhcccCCCCCCcEEEEEeccccHHH
Q 001155 682 YHQECGRAGRDGQRSSCVLYYSYSDFIR 709 (1136)
Q Consensus 682 YiQriGRAGR~G~~g~~il~~~~~D~~~ 709 (1136)
|+||+|||||. ..|.|++|++..+...
T Consensus 534 ~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 534 LIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 99999999998 7899999998876543
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=1.4e-17 Score=205.16 Aligned_cols=137 Identities=17% Similarity=0.117 Sum_probs=108.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhh---CCCcEEEEccChhhHHHHHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALI---CPGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~---~~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
..+.++.+.++|+ .++++|..+++.++.|+ |+.|.||+|||++|.||++. .+..++||+||+.|+.+....+..
T Consensus 66 AvvREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 66 ALTRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp HHHHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3567788888999 89999999999999998 99999999999999999963 356799999999999987766655
Q ss_pred c----CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH---hhhhhh---ccceeeeecccc
Q 001155 456 A----NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE---SLNARE---LLARIVIDEAHC 525 (1136)
Q Consensus 456 ~----gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~---~l~~~~---~l~lVVIDEAH~ 525 (1136)
+ |+++.++.|+++...+...+ .++|+|+||+.+. .|.+...+. .-.... .+.++||||||.
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlg-fDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKAY--------LADVTYVTNSELG-FDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHH-HHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhh-hHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 4 89999999998865443322 6899999999982 155555431 001123 589999999999
Q ss_pred cc
Q 001155 526 VS 527 (1136)
Q Consensus 526 ls 527 (1136)
++
T Consensus 214 mL 215 (997)
T 2ipc_A 214 IL 215 (997)
T ss_dssp HT
T ss_pred HH
Confidence 86
No 77
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.76 E-value=5.6e-19 Score=186.43 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=104.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC---------CCcEEEEccChhhHHH-HHHHHHHc---
Q 001155 390 GNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSLIQD-QIMHLLQA--- 456 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~---------~g~~LVIsPtraL~~d-qv~~L~~~--- 456 (1136)
+...|+++|.++++.++.++++++++|||+|||++|+++++.. .+++|||+|+++|+.| +.+.+..+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 4457999999999999999999999999999999999998743 6789999999999988 44444443
Q ss_pred CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHh---hhhhhccceeeeeccccccccCCCC
Q 001155 457 NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLES---LNARELLARIVIDEAHCVSQWGHDF 533 (1136)
Q Consensus 457 gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~---l~~~~~l~lVVIDEAH~ls~wGhdf 533 (1136)
++.+..+.|+.........+. ...+|+|+||+++. ..+...... ......+++|||||||++...+ .+
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~------~~~~i~v~T~~~l~--~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~ 180 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVV------KSCDIIISTAQILE--NSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VY 180 (216)
T ss_dssp TSCEEECCC---CCCCHHHHH------HHCSEEEEEHHHHH--HHHHC-------CCCGGGCSEEEETTC--------CH
T ss_pred CceEEEEeCCcccchhHHhhc------cCCCEEEECHHHHH--HHHhccCcccccccchhcccEEEEECchhhccCC-cH
Confidence 678888888765433222222 26889999999985 333221110 0123568999999999986433 12
Q ss_pred ccchhhhhhhh-----------ccCCCCCEEEEeec
Q 001155 534 RPDYQGLGILK-----------QKFPNTPVLALTAT 558 (1136)
Q Consensus 534 R~~y~~L~~l~-----------~~~p~~~iv~LSAT 558 (1136)
+..+..+.... ...+..++++||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 22221111000 01267889999998
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.75 E-value=5.9e-18 Score=173.13 Aligned_cols=96 Identities=22% Similarity=0.350 Sum_probs=91.7
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|+.|.|+
T Consensus 57 ~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~ 136 (163)
T 2hjv_A 57 DLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 136 (163)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEE
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHh
Q 001155 700 LYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 700 l~~~~~D~~~~~~li~ 715 (1136)
+|+...|...+..+..
T Consensus 137 ~~~~~~~~~~~~~i~~ 152 (163)
T 2hjv_A 137 SFVTAFEKRFLADIEE 152 (163)
T ss_dssp EEECGGGHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHH
Confidence 9999999887776653
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.75 E-value=1.1e-17 Score=178.82 Aligned_cols=95 Identities=29% Similarity=0.527 Sum_probs=88.9
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|+++..|+||+|||||.|++|.|+
T Consensus 53 ~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 132 (212)
T 3eaq_A 53 RLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVV 132 (212)
T ss_dssp HHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEE
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHH
Q 001155 700 LYYSYSDFIRVKHMI 714 (1136)
Q Consensus 700 l~~~~~D~~~~~~li 714 (1136)
+|++..+...+..+.
T Consensus 133 ~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 133 LLYGPRERRDVEALE 147 (212)
T ss_dssp EEECGGGHHHHHHHH
T ss_pred EEEchhHHHHHHHHH
Confidence 999999987776654
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=9.8e-18 Score=173.28 Aligned_cols=88 Identities=23% Similarity=0.333 Sum_probs=84.9
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.++
T Consensus 53 ~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~ 132 (172)
T 1t5i_A 53 EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 132 (172)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccH
Q 001155 700 LYYSYSDF 707 (1136)
Q Consensus 700 l~~~~~D~ 707 (1136)
+|+++.+.
T Consensus 133 ~~~~~~~~ 140 (172)
T 1t5i_A 133 TFVSDEND 140 (172)
T ss_dssp EEECSHHH
T ss_pred EEEcChhH
Confidence 99987643
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=172.93 Aligned_cols=96 Identities=21% Similarity=0.394 Sum_probs=87.4
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCC------CCHhHHHHHhcccCCCC
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP------KSIEGYHQECGRAGRDG 693 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P------~Sie~YiQriGRAGR~G 693 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++| .+..+|+||+|||||.|
T Consensus 56 ~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g 135 (175)
T 2rb4_A 56 QDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG 135 (175)
T ss_dssp TTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC
Confidence 778999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCcEEEEEeccccHHHHHHHHh
Q 001155 694 QRSSCVLYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 694 ~~g~~il~~~~~D~~~~~~li~ 715 (1136)
..|.|++|+...+...+..+..
T Consensus 136 ~~g~~~~~~~~~~~~~~~~i~~ 157 (175)
T 2rb4_A 136 KKGLAFNMIEVDELPSLMKIQD 157 (175)
T ss_dssp CCEEEEEEECGGGHHHHHHHHH
T ss_pred CCceEEEEEccchHHHHHHHHH
Confidence 9999999999999877766654
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.73 E-value=1.7e-17 Score=169.85 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=86.5
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|+.|.|+
T Consensus 52 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 131 (165)
T 1fuk_A 52 NDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI 131 (165)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEE
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHh
Q 001155 700 LYYSYSDFIRVKHMIS 715 (1136)
Q Consensus 700 l~~~~~D~~~~~~li~ 715 (1136)
+|++..+...+..+..
T Consensus 132 ~~~~~~~~~~~~~~~~ 147 (165)
T 1fuk_A 132 NFVTNEDVGAMRELEK 147 (165)
T ss_dssp EEEETTTHHHHHHHHH
T ss_pred EEEcchHHHHHHHHHH
Confidence 9999999887776643
No 83
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.72 E-value=1.7e-17 Score=201.28 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=91.4
Q ss_pred hCCCCCCHHHHHHHHHH----HCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 389 FGNHSFRPNQREIINAT----MSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~i----l~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
.|| .+||+|.+++..+ ..|+++++.||||+|||++|++|++...+++||++||++|+.|+++.+..+++++..+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 477 7999999987654 57899999999999999999999999999999999999999999999988888888777
Q ss_pred CCCCHHHH-----------------------------HHHHHHH------------hcccCcceEEEeChhhhhchHHHH
Q 001155 465 GNMEWTEQ-----------------------------QEILREL------------NSDYCKYKLLYVTPEKVAKSDVLL 503 (1136)
Q Consensus 465 g~~~~~~~-----------------------------~~~l~~l------------~~~~~~~~ILV~TPEkL~~~d~l~ 503 (1136)
|....-.. ...+..+ +......+|||+|+..+.. +...
T Consensus 83 gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~-~~~~ 161 (540)
T 2vl7_A 83 GKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQ-KPIR 161 (540)
T ss_dssp --------------------------------------------------------CTTGGGCSEEEEETHHHHS-HHHH
T ss_pred CCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcC-HHHH
Confidence 64310000 0000000 0012357999999999974 2222
Q ss_pred HHHHh---hhhhhccceeeeecccccc
Q 001155 504 RQLES---LNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 504 r~l~~---l~~~~~l~lVVIDEAH~ls 527 (1136)
+.+.. ........+|||||||.|.
T Consensus 162 ~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 162 NSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HhhCcccccccCcCCCEEEEEccccHH
Confidence 22210 0012346889999999994
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=174.50 Aligned_cols=95 Identities=24% Similarity=0.399 Sum_probs=76.1
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|+++.+|+||+||+||.|+.|.|+
T Consensus 68 ~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~ 147 (185)
T 2jgn_A 68 HEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 147 (185)
T ss_dssp HTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEE
T ss_pred HcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHH
Q 001155 700 LYYSYSDFIRVKHMI 714 (1136)
Q Consensus 700 l~~~~~D~~~~~~li 714 (1136)
+|++..|...++.+.
T Consensus 148 ~~~~~~~~~~~~~l~ 162 (185)
T 2jgn_A 148 SFFNERNINITKDLL 162 (185)
T ss_dssp EEECGGGGGGHHHHH
T ss_pred EEEchhhHHHHHHHH
Confidence 999998876665554
No 85
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=99.71 E-value=1.6e-17 Score=157.35 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=80.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 001155 947 LNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEF 1026 (1136)
Q Consensus 947 ~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~ 1026 (1136)
.+.+.+||++|+.||+++|++ .++|||+||+|.+|++||..+|.|.++|.+|+|||+.|+++| ++||++|++|+.++
T Consensus 11 ~~~d~~l~~~L~~wR~~~A~~--~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~ 87 (103)
T 2e1f_A 11 QETQIVLYGKLVEARQKHANK--MDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFCQTN 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHH--cCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhc
Confidence 356789999999999999999 899999999999999999999999999999999999999999 99999999999998
Q ss_pred cccCCCCCCCC
Q 001155 1027 YKTDKNGSSSN 1037 (1136)
Q Consensus 1027 ~~~~~~~~~~~ 1037 (1136)
.+.....+.+.
T Consensus 88 ~i~~~~~~~~~ 98 (103)
T 2e1f_A 88 SVQTDLFSSTK 98 (103)
T ss_dssp TCCCCCCCC--
T ss_pred CCCcCCCCCCC
Confidence 88776555443
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=172.47 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=83.1
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|+
T Consensus 76 ~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i 155 (191)
T 2p6n_A 76 LKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIAT 155 (191)
T ss_dssp HHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEE
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccc-cHHHH
Q 001155 700 LYYSYS-DFIRV 710 (1136)
Q Consensus 700 l~~~~~-D~~~~ 710 (1136)
+|++.. +...+
T Consensus 156 ~l~~~~~~~~~~ 167 (191)
T 2p6n_A 156 TFINKACDESVL 167 (191)
T ss_dssp EEECTTSCHHHH
T ss_pred EEEcCchhHHHH
Confidence 999876 44433
No 87
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=99.71 E-value=1.7e-17 Score=159.53 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 001155 947 LNLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEF 1026 (1136)
Q Consensus 947 ~~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~ 1026 (1136)
...+.+||++|+.||+++|++ .++|||+||+|.+|++||..+|.|.++|.+|+|||+.|+++| ++||++|++|+.++
T Consensus 18 ~~~d~~l~~~L~~wR~~~A~~--~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~ 94 (113)
T 2dgz_A 18 QETQIVLYGKLVEARQKHANK--MDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQTN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHH--hCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHhc
Confidence 346789999999999999999 899999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCCC
Q 001155 1027 YKTDKNGSSSN 1037 (1136)
Q Consensus 1027 ~~~~~~~~~~~ 1037 (1136)
.+..+..+.++
T Consensus 95 ~~~~~~~~~~~ 105 (113)
T 2dgz_A 95 SVQTDLFSSTK 105 (113)
T ss_dssp TCCCCCCSSCC
T ss_pred CCCCCCCCCCC
Confidence 88776665444
No 88
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=5.9e-17 Score=176.13 Aligned_cols=140 Identities=21% Similarity=0.157 Sum_probs=113.1
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCC-eEEecCCCCHH
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIP-ATFLSGNMEWT 470 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~-v~~L~g~~~~~ 470 (1136)
..++++|.+++..++.++++++++|||+|||++++.++....+++|||+|+++|+.|+.+.+.++++. +..+.|+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-- 169 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-- 169 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC--
Confidence 47999999999999999899999999999999999999888899999999999999999999998998 888888753
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCC
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~ 550 (1136)
...+|+|+||+.+.. . ...+ ...+++|||||||++...+ |. .+...++..
T Consensus 170 -------------~~~~i~v~T~~~l~~--~----~~~~--~~~~~llIiDEaH~l~~~~------~~---~i~~~~~~~ 219 (237)
T 2fz4_A 170 -------------ELKPLTVSTYDSAYV--N----AEKL--GNRFMLLIFDEVHHLPAES------YV---QIAQMSIAP 219 (237)
T ss_dssp -------------CCCSEEEEEHHHHHH--T----HHHH--TTTCSEEEEECSSCCCTTT------HH---HHHHTCCCS
T ss_pred -------------CcCCEEEEeHHHHHh--h----HHHh--cccCCEEEEECCccCCChH------HH---HHHHhccCC
Confidence 256899999998842 1 1111 2348999999999986532 33 344455677
Q ss_pred CEEEEeeccchhh
Q 001155 551 PVLALTATATASV 563 (1136)
Q Consensus 551 ~iv~LSAT~~~~v 563 (1136)
++++||||+.+..
T Consensus 220 ~~l~LSATp~r~D 232 (237)
T 2fz4_A 220 FRLGLTATFERED 232 (237)
T ss_dssp EEEEEEESCC---
T ss_pred EEEEEecCCCCCC
Confidence 8999999998753
No 89
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=1e-16 Score=180.33 Aligned_cols=95 Identities=28% Similarity=0.524 Sum_probs=85.8
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|++...|+||+|||||.|++|.|+
T Consensus 50 ~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i 129 (300)
T 3i32_A 50 RLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVV 129 (300)
T ss_dssp TTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEE
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHH
Q 001155 700 LYYSYSDFIRVKHMI 714 (1136)
Q Consensus 700 l~~~~~D~~~~~~li 714 (1136)
+|++..+...+..+.
T Consensus 130 ~l~~~~e~~~~~~ie 144 (300)
T 3i32_A 130 LLYGPRERRDVEALE 144 (300)
T ss_dssp EEECSSTHHHHHHHH
T ss_pred EEeChHHHHHHHHHH
Confidence 999999977766554
No 90
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=149.92 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 001155 948 NLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFY 1027 (1136)
Q Consensus 948 ~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~~ 1027 (1136)
+.+++||++|+.||+++|++ .++|||+||+|.+|.+||..+|.|.++|..|+|||+.|+++||+.||++|++|+.++.
T Consensus 4 ~~~~~l~~~L~~wR~~~A~~--~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~e~~ 81 (85)
T 2kv2_A 4 EMVKKCLGELTEVCKSLGKV--FGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTS 81 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHH--cCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 34588999999999999999 8999999999999999999999999999999999999999999999999999987664
No 91
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=153.13 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 001155 948 NLSAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFY 1027 (1136)
Q Consensus 948 ~~~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~~ 1027 (1136)
+.+.+||++|+.||+++|++ .++|||+||+|.+|.+||..+|.|.++|..|+|||+.|+++||++||++|++|+.++.
T Consensus 19 e~~~~l~~~L~~wR~~~A~~--~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~~e~~ 96 (101)
T 2rrd_A 19 EMVKKCLGELTEVCKSLGKV--FGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYSEWTS 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhChhhC
Confidence 45689999999999999999 8999999999999999999999999999999999999999999999999999987764
Q ss_pred c
Q 001155 1028 K 1028 (1136)
Q Consensus 1028 ~ 1028 (1136)
-
T Consensus 97 P 97 (101)
T 2rrd_A 97 P 97 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 92
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=99.68 E-value=5.6e-17 Score=145.96 Aligned_cols=73 Identities=42% Similarity=0.711 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 950 SAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 950 ~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
+.+||++|+.||+++|++ .++|||+||+|++|.+||..+|.|.++|.+|+|||+.|+++||+.||++|++|+.
T Consensus 4 d~~l~~~L~~wR~~~A~~--~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~~ 76 (77)
T 2rhf_A 4 NADLSEALRELRRELMKE--TGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTVLD 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999 8999999999999999999999999999999999999999999999999999964
No 93
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.68 E-value=1.1e-16 Score=177.85 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHcCC----CeEEec
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQANI----PATFLS 464 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~gI----~v~~L~ 464 (1136)
.|+++|.++++.++.+++.++++|||+|||+++++++... .+++|||+|+++|+.|+.+.+.+.+. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 7999999999999988889999999999999998877642 45899999999999999999988743 556676
Q ss_pred CCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhh
Q 001155 465 GNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILK 544 (1136)
Q Consensus 465 g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~ 544 (1136)
++..... ......+|+|+||+.+... .......+++|||||||++.. +.+ ..+.
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~--------~~~~~~~~~~vIiDEaH~~~~------~~~---~~il 246 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQ--------PKEWFSQFGMMMNDECHLATG------KSI---SSII 246 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTS--------CGGGGGGEEEEEEETGGGCCH------HHH---HHHT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhh--------HHHHHhhCCEEEEECCccCCc------ccH---HHHH
Confidence 6654322 0114688999999988532 012234589999999999853 222 3333
Q ss_pred ccC-CCCCEEEEeeccchhh
Q 001155 545 QKF-PNTPVLALTATATASV 563 (1136)
Q Consensus 545 ~~~-p~~~iv~LSAT~~~~v 563 (1136)
..+ +..++++||||+++..
T Consensus 247 ~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTCTTCCEEEEECSSCCTTS
T ss_pred HHhhcCCeEEEEeCCCCCcc
Confidence 333 4788999999998764
No 94
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=99.66 E-value=8.1e-17 Score=148.88 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 001155 950 SAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIKEFY 1027 (1136)
Q Consensus 950 ~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~~ 1027 (1136)
+.+||++|+.||+++|++ .++|||+||+|++|.+||..+|.|.++|..|+|||+.|+++||+.||++|++|+.++.
T Consensus 12 ~~~l~~~L~~wR~~~A~~--~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~~e~~ 87 (89)
T 1wud_A 12 DRKLFAKLRKLRKSIADE--SNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDD 87 (89)
T ss_dssp CHHHHHHHHHHHHHHHHH--HTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999 8999999999999999999999999999999999999999999999999999987764
No 95
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=173.24 Aligned_cols=156 Identities=15% Similarity=0.069 Sum_probs=109.8
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhhhC--------CCcEEEEccChhhHHHHHHHHHHc-CC---
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLIQDQIMHLLQA-NI--- 458 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL~~--------~g~~LVIsPtraL~~dqv~~L~~~-gI--- 458 (1136)
...++++|.++++.+..|++++++||||+|||.++.++++.. ...+|++.|+++|+.++.+.+... +.
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 345789999999999999999999999999999887776632 237899999999999888888654 22
Q ss_pred -CeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc-cccCCCCccc
Q 001155 459 -PATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV-SQWGHDFRPD 536 (1136)
Q Consensus 459 -~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l-s~wGhdfR~~ 536 (1136)
.+..-..... .......+|+|+||+++. +.+.. ....+++|||||||.+ .+.+ |..
T Consensus 139 ~~~g~~~~~~~-----------~~~~~~~~Ivv~Tpg~l~--~~l~~------~l~~~~~lVlDEah~~~~~~~--~~~- 196 (235)
T 3llm_A 139 KSCGYSVRFES-----------ILPRPHASIMFCTVGVLL--RKLEA------GIRGISHVIVDEIHERDINTD--FLL- 196 (235)
T ss_dssp SSEEEEETTEE-----------ECCCSSSEEEEEEHHHHH--HHHHH------CCTTCCEEEECCTTSCCHHHH--HHH-
T ss_pred ceEEEeechhh-----------ccCCCCCeEEEECHHHHH--HHHHh------hhcCCcEEEEECCccCCcchH--HHH-
Confidence 2221110000 000136889999999986 33322 2456899999999984 3322 221
Q ss_pred hhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhc
Q 001155 537 YQGLGILKQKFPNTPVLALTATATASVKEDVVQALG 572 (1136)
Q Consensus 537 y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~ 572 (1136)
..+..+....++.++++||||++... +.++++
T Consensus 197 -~~l~~i~~~~~~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 197 -VVLRDVVQAYPEVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp -HHHHHHHHHCTTSEEEEEECSSCCHH---HHHHTT
T ss_pred -HHHHHHHhhCCCCeEEEEecCCCHHH---HHHHcC
Confidence 23455666668899999999999875 555553
No 96
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.45 E-value=1.3e-17 Score=171.64 Aligned_cols=94 Identities=23% Similarity=0.452 Sum_probs=88.6
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 699 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~i 699 (1136)
..|+.+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.++
T Consensus 52 ~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~ 131 (170)
T 2yjt_D 52 EAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 131 (170)
Confidence 66888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHH
Q 001155 700 LYYSYSDFIRVKHM 713 (1136)
Q Consensus 700 l~~~~~D~~~~~~l 713 (1136)
+|+...|...+..+
T Consensus 132 ~~~~~~~~~~~~~~ 145 (170)
T 2yjt_D 132 SLVEAHDHLLLGKV 145 (170)
Confidence 99998887665544
No 97
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.60 E-value=8.5e-14 Score=169.20 Aligned_cols=132 Identities=23% Similarity=0.189 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHH----HCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc----CCCeEEec
Q 001155 393 SFRPNQREIINAT----MSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA----NIPATFLS 464 (1136)
Q Consensus 393 ~lrpiQ~eaI~~i----l~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~----gI~v~~L~ 464 (1136)
.+||+|.+++..+ ..|+++++.||||+|||++|++|++....++||++||++|+.|..+.+..+ ++++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 5899999987754 478999999999999999999999998999999999999999888888776 67888777
Q ss_pred CCCC---------------------------------HHHHHHHHH------------HHhcccCcceEEEeChhhhhch
Q 001155 465 GNME---------------------------------WTEQQEILR------------ELNSDYCKYKLLYVTPEKVAKS 499 (1136)
Q Consensus 465 g~~~---------------------------------~~~~~~~l~------------~l~~~~~~~~ILV~TPEkL~~~ 499 (1136)
|... ......... ..+......+|||+|+..|..
T Consensus 83 gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~- 161 (551)
T 3crv_A 83 GKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFI- 161 (551)
T ss_dssp CHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHC-
T ss_pred cccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcC-
Confidence 6311 011111110 000011378999999999974
Q ss_pred HHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 500 DVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 500 d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
...+.. +.......+|||||||.|.+
T Consensus 162 -~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 162 -DRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp -HHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred -HHHHHh--cCCCcCCeEEEEecccchHH
Confidence 222211 11112357899999999865
No 98
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=99.44 E-value=5.4e-14 Score=139.66 Aligned_cols=102 Identities=25% Similarity=0.304 Sum_probs=87.4
Q ss_pred ccccchhHHHHHHHHHHHHhCCCCChhhhhHhhhccchhHHhhcccccccccCCcccCCHHHHHHHHHHHHHhcchhhhh
Q 001155 791 FIEKDVTDTAKKLVELVKLTGQQFSSSHILEVFRGSLNQYVKKHRHETLSLHGAGKHLAKSEASRILRHLVIEDFLMEEV 870 (1136)
Q Consensus 791 ~~~~d~t~~a~~~l~~v~~~~~~~~~~~~~~~lrGs~~~~v~~~~~~~~~~~G~gk~~s~~~~~~li~~l~~~g~L~e~~ 870 (1136)
....|+|++|+++|+||.+++++||.++++|||+|+++++|.++ |+.+++||.|+++++.+|++++++|+.+|||.++.
T Consensus 9 ~e~~D~T~~AqkiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~-~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~ 87 (134)
T 3aaf_A 9 DTSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQ-YRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVS 87 (134)
T ss_dssp --CEECHHHHHHHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGG-GGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccccCchHHHHHHHHHHHHHcCcccccchhhhhcCCcHHHHHHH-hCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeec
Confidence 34679999999999999999999999999999999999999987 88999999999999999999999999999999864
Q ss_pred hcccCCCceeeEEeeccccccccccCce
Q 001155 871 KKSDVYGSVSSVLKVNQSKAHNLIIGRQ 898 (1136)
Q Consensus 871 ~~~~~~g~~~~~l~l~~~ka~~Ll~G~~ 898 (1136)
.. ..|+ .+|++|+ +++.+|.+..
T Consensus 88 ~~-~~~~---~~L~Lt~-~g~~vL~~~~ 110 (134)
T 3aaf_A 88 RY-NKFM---KICALTK-KGRNWLHKAN 110 (134)
T ss_dssp CS-STTC---EEEEECH-HHHHHHHHHT
T ss_pred Cc-CccC---ceEEECH-HHHHHHhCCc
Confidence 11 1143 3589986 5778877654
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.40 E-value=1e-11 Score=152.87 Aligned_cols=73 Identities=26% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHH----HCCCcEEEEccCCChHHHHHHhhhhhC----CCcEEEEccChhhHHHHHHHHHHc----CCCe
Q 001155 393 SFRPNQREIINAT----MSGHDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMHLLQA----NIPA 460 (1136)
Q Consensus 393 ~lrpiQ~eaI~~i----l~g~dvLV~APTGsGKTl~y~LpaL~~----~g~~LVIsPtraL~~dqv~~L~~~----gI~v 460 (1136)
.+||.|.+.+..+ ..|+++++.||||+|||++|++|++.. +.++||++||++|+.|.++.+... ++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~ 82 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRA 82 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEE
Confidence 4799999998754 469999999999999999999999865 789999999999999988888664 5666
Q ss_pred EEecC
Q 001155 461 TFLSG 465 (1136)
Q Consensus 461 ~~L~g 465 (1136)
..+.|
T Consensus 83 ~~l~g 87 (620)
T 4a15_A 83 IPMQG 87 (620)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 66554
No 100
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.26 E-value=3.7e-12 Score=141.24 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=61.2
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcC-Cce-EEEeeccccccccCCCccEEEEcCCCCCHhHHHHHhcccCCCCCCcEE
Q 001155 621 CGHKAAFYHGSIDPAQRAFVQKQWSKD-EIN-IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 698 (1136)
Q Consensus 621 ~g~~v~~~Hagm~~~dR~~i~~~F~~g-~i~-VLVAT~alg~GIDlP~V~~VIh~d~P~Sie~YiQriGRAGR~G~~g~~ 698 (1136)
.|+.+..+||+++..+|..+++.|.++ .++ +|++|.++++|||++++++||+||+|+++..|.|++||++|.|+.+.+
T Consensus 136 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 136 LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CC
T ss_pred cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCce
Confidence 388899999999999999999999998 777 789999999999999999999999999999999999999999997765
Q ss_pred EE
Q 001155 699 VL 700 (1136)
Q Consensus 699 il 700 (1136)
.+
T Consensus 216 ~v 217 (271)
T 1z5z_A 216 IV 217 (271)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 101
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.94 E-value=6.4e-10 Score=130.34 Aligned_cols=71 Identities=10% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTI 1023 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~ 1023 (1136)
..+|++|+.||.++|++ .++|||.||+|++|.+||+.+|+|.++|.+|.|+|+.++++||++||++|+++.
T Consensus 329 l~l~~~L~~wR~~~Ar~--~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~ 399 (428)
T 3saf_A 329 LTAFQLLFAWRDKTARR--EDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAR 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--cCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999 899999999999999999999999999999999999999999999999999843
No 102
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=98.91 E-value=1e-09 Score=128.38 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
.++|++|+.||.++|++ .++|||.||+|++|.+||+.+|+|.++|.+|.|+|+.++++||++||++|+++..
T Consensus 313 ~~l~~~L~~wR~~~Ar~--~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~~~ 384 (410)
T 2hbj_A 313 EVLVRELYQWRDLIARR--DDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALR 384 (410)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--cCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999 8999999999999999999999999999999999999999999999999999864
No 103
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=98.85 E-value=3.2e-09 Score=122.98 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 950 SAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 950 ~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
+..+|++|..||.++|++ .++|||.||+|.+|.+||..+|+|.++|..| |+|+.++++||+.||++|+++..
T Consensus 213 ~~~~~~~L~~wR~~~A~~--~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~~~~~~~~g~~~l~~i~~~~~ 284 (375)
T 1yt3_A 213 QLACLQLLADWRLRKARE--RDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQT 284 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCChHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999 8999999999999999999999999999999 99999999999999999999765
No 104
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=98.50 E-value=4.5e-08 Score=115.54 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHH------------------HH-
Q 001155 950 SAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKV------------------SK- 1010 (1136)
Q Consensus 950 ~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~------------------~k- 1010 (1136)
+..+|++|..||.++|++ .++|||.||+|++|.+||..+|.|.++|..|.|||+.+. ++
T Consensus 233 ~l~~~~~L~~wR~~~Ar~--~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 310 (440)
T 3cym_A 233 ALAIVRALWTRRDELARE--YDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKI 310 (440)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhh
Confidence 367999999999999999 999999999999999999999999999999999999999 98
Q ss_pred HHHHHHHHHHHHHH
Q 001155 1011 YGVRLLETIESTIK 1024 (1136)
Q Consensus 1011 YG~~iL~~i~~~~~ 1024 (1136)
||..|+++|+++..
T Consensus 311 ~~~~~l~~i~~~~~ 324 (440)
T 3cym_A 311 KPSMWKNIIQDALA 324 (440)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999999754
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.66 E-value=0.00013 Score=89.50 Aligned_cols=76 Identities=17% Similarity=0.055 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHCCCcEEEEccCCChHH--HHHHhhhhhC-----CCcEEEEccChhhHHHHHH
Q 001155 379 KKLEANNKKVFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKS--LTYQLPALIC-----PGITLVISPLVSLIQDQIM 451 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKT--l~y~LpaL~~-----~g~~LVIsPtraL~~dqv~ 451 (1136)
..+...+...|+-..-.+.|++++..++.++.+++.+|+|+||| ++++++++.. +.++++++||..++.+..+
T Consensus 135 ~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHH
Confidence 45666677766533337899999999999999999999999999 6788888752 3489999999999886555
Q ss_pred HHH
Q 001155 452 HLL 454 (1136)
Q Consensus 452 ~L~ 454 (1136)
.+.
T Consensus 215 ~~~ 217 (608)
T 1w36_D 215 SLG 217 (608)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 106
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.56 E-value=0.00023 Score=88.01 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHCCCc-EEEEccCCChHHHHH--Hh-hhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 392 HSFRPNQREIINATMSGHD-VFVLMPTGGGKSLTY--QL-PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~d-vLV~APTGsGKTl~y--~L-paL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
..|++-|.+|+..++..++ .||.+|.|+|||.+. ++ -++..+.++|+++||..-+.+.+..|...+.++.-+.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 4589999999999997765 789999999999652 22 2234578999999999999999999988877765543
No 107
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=97.52 E-value=0.00017 Score=64.02 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYG 1012 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG 1012 (1136)
...|+.|++.|-..+.+ .+.|--.+++|..|++||...|.|.+|+.+|.|+++...++|-
T Consensus 6 ~~ay~~Lr~~~i~~s~~--~~p~~s~~m~d~~Lrk~A~~LP~~e~eF~~L~g~~~~~~~~fk 65 (81)
T 1d8b_A 6 RMTYERLRELSLNLGNR--MVPPVGNFMPDSILKKMAAILPMNDSAFATLGTVEDKYRRRFK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHS--SSSCCSCSSCHHHHHHHHHHCCCSHHHHGGGSCCCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhc--cCCchhhhccHHHHHHHHHHCCCCHHHHHHccCCCHHHHHHHH
Confidence 45799999999999998 6555567889999999999999999999999999999999996
No 108
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.38 E-value=0.001 Score=81.93 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhhh--CCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALI--CPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~--~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
+..+++.|.+|+..++.+.-++|.+|+|+|||.+. ++..+. .+.++++++|+...+.+....+.+.|+++.-+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~ 255 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC 255 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECC
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeec
Confidence 45689999999999998778999999999999753 333333 467899999999999988888888777654443
No 109
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0017 Score=82.14 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhhh--CCCcEEEEccChhhHHHHHHHHHHcCCCeEEe
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALI--CPGITLVISPLVSLIQDQIMHLLQANIPATFL 463 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~--~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L 463 (1136)
+..|++.|.+|+..++.+.-++|.||.|+|||.+. ++..+. .+.++|+++|+...+.+....+.+.|+++.-+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~ 434 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRL 434 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEEC
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEee
Confidence 45789999999999998777999999999999653 222222 46799999999999999999998887765444
No 110
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.13 E-value=0.0018 Score=81.85 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhhh--CCCcEEEEccChhhHHHHHHHHHHcCCCeEEec
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPALI--CPGITLVISPLVSLIQDQIMHLLQANIPATFLS 464 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL~--~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~ 464 (1136)
...+++.|.+|+..++.+.-++|.+|.|+|||.+. ++..+. .+.++++++|+..-+.+....+...|+++.-+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg 431 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC 431 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECC
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeec
Confidence 45689999999999998878999999999999653 333333 367899999999999988888888777654443
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.98 E-value=0.006 Score=74.32 Aligned_cols=58 Identities=14% Similarity=-0.009 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH--Hhhhh-hCCCcEEEEccChhhHHHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTY--QLPAL-ICPGITLVISPLVSLIQDQI 450 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y--~LpaL-~~~g~~LVIsPtraL~~dqv 450 (1136)
.+++.|.+++..++.++.++|.+|.|+|||.+. ++-.+ ..+..+++++||...+....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLG 249 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhH
Confidence 589999999999999889999999999999653 33323 23678999999988776443
No 112
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.54 E-value=0.17 Score=58.53 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh----hC-CCcEEEEccChhhHHHHHHHHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL----IC-PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL----~~-~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.|.|+|..++..+...+-+++..+-+.|||.+....++ .. +..+++++|+...+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 68999999998876556689999999999976443332 22 45799999999988776655543
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.55 E-value=0.078 Score=62.53 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHC----CC-cEEEEccCCChHHHHH--HhhhhhC-CC-cEEEEccChhhHHHHHH
Q 001155 390 GNHSFRPNQREIINATMS----GH-DVFVLMPTGGGKSLTY--QLPALIC-PG-ITLVISPLVSLIQDQIM 451 (1136)
Q Consensus 390 G~~~lrpiQ~eaI~~il~----g~-dvLV~APTGsGKTl~y--~LpaL~~-~g-~~LVIsPtraL~~dqv~ 451 (1136)
.|..|++-|.+++..++. ++ .++|.|+.|+|||.+. ++..+.. +. .+++++||...+.....
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 577899999999998753 23 8999999999999753 2333333 33 68999999877764433
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.3 Score=55.01 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
+.++++.+|+|+|||.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999864
No 115
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.18 E-value=0.37 Score=58.70 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHHhhhh----hCC-CcEEEEccChhhHHHHHHHHHH
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPAL----ICP-GITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~LpaL----~~~-g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
.|+|+|..++..+...+-+++.++-|.|||.+....++ ..+ ..+++++|+...+.+.+..+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 47999999998875567799999999999976432222 223 4799999999998877765554
No 116
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.24 E-value=0.53 Score=47.98 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.5
Q ss_pred CcEEEEccCCChHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y 425 (1136)
..+++.+|+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999753
No 117
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.05 E-value=0.36 Score=48.02 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
...+++.+|+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999764
No 118
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.75 E-value=0.34 Score=54.95 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=58.3
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEE-ecCCCCHHHHHHH---HHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQA--NIPATF-LSGNMEWTEQQEI---LRE 478 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~-L~g~~~~~~~~~~---l~~ 478 (1136)
|.=++|.|++|+|||..++--+ ...+..++|++---+ ..+.+.++... ++.... ..|..+..+...+ ...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4458899999999997543222 235677888875322 22333444222 444322 2344443332221 112
Q ss_pred HhcccCcceEEE-eChhhhhchHHHHHHHHhhhhhh-ccceeeeecccccc
Q 001155 479 LNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNARE-LLARIVIDEAHCVS 527 (1136)
Q Consensus 479 l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~~-~l~lVVIDEAH~ls 527 (1136)
+. ...+.| -+|..- .+.+...+..+.... .+++||||-.+.|.
T Consensus 125 l~----~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 125 LS----QKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HH----HSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred Hh----cCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence 21 223433 445321 133444444444333 58999999999984
No 119
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.67 E-value=0.14 Score=60.09 Aligned_cols=44 Identities=16% Similarity=-0.018 Sum_probs=34.0
Q ss_pred EEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc
Q 001155 411 VFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.++.|+.|+|||...+--+ .....+|++|+++++.++.+.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~~--~~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV--NFEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC--CTTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHh--ccCCeEEEeCCHHHHHHHHHHhhhc
Confidence 7899999999998643221 2357799999999999888877543
No 120
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.62 E-value=0.64 Score=54.50 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=56.8
Q ss_pred CCcEEEEccCCChHHHHHH-hhh--hh-CCCcEEEEccChhhHHHHHHHHHH--cCCCeEEe-cCCCCHHHHHHH---HH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPA--LI-CPGITLVISPLVSLIQDQIMHLLQ--ANIPATFL-SGNMEWTEQQEI---LR 477 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-Lpa--L~-~~g~~LVIsPtraL~~dqv~~L~~--~gI~v~~L-~g~~~~~~~~~~---l~ 477 (1136)
|.=++|.|++|+|||...+ +.. .. .+..++|++---+ ..+.+.++.. .++....+ .|..+..+.... ..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 5558999999999996543 222 22 2457888775322 2233334322 24433222 343443332221 12
Q ss_pred HHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 478 ELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 478 ~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
.+. ...+.+..+..+. ...+...+..+.....+++||||..+.+..
T Consensus 279 ~l~----~~~l~i~d~~~~s-~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 279 RLS----EAPIYIDDTPDLT-LMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHH----TSCEEEECCTTCB-HHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHh----cCCEEEECCCCCC-HHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 221 2334443222111 122333344333334589999999999853
No 121
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.56 E-value=0.15 Score=62.25 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH--hhhhh-C----CCcEEEEccChhhHHHHHHHHHHc
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ--LPALI-C----PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~--LpaL~-~----~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
..|++-|.+|+. .....++|.|+.|+|||.+.. +.-+. . ...+|+|++|+..+.+...++.+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 568999999997 335679999999999997643 22222 2 257999999999999888888764
No 122
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.55 E-value=0.53 Score=55.36 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=57.9
Q ss_pred CCCcEEEEccCCChHHHHHHhhhh---h-CCCcEEEEccChhhHHHHHHHHH--HcCCCeEEe-cCCCCHHHHHH---HH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPAL---I-CPGITLVISPLVSLIQDQIMHLL--QANIPATFL-SGNMEWTEQQE---IL 476 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~LpaL---~-~~g~~LVIsPtraL~~dqv~~L~--~~gI~v~~L-~g~~~~~~~~~---~l 476 (1136)
.|.-++|.|++|+|||...+--+. . .+..++|++.-.+- .+...++. ..++....+ .|......... .+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~ 280 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAM 280 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 355689999999999975432222 2 24478888743322 23333332 224443222 23333332222 11
Q ss_pred HHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccc
Q 001155 477 RELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQ 528 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~ 528 (1136)
..+. ..++.+.-+..+.- ..+......+.....+++||||+.+.+..
T Consensus 281 ~~l~----~~~l~i~d~~~~s~-~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 281 GSLS----NAGIYIDDTPSIRV-SDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHH----SSCEEEECCTTCCH-HHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHh----cCCEEEECCCCCCH-HHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 2221 23455543332211 22333333333334589999999999853
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.52 E-value=1.2 Score=46.68 Aligned_cols=51 Identities=14% Similarity=-0.003 Sum_probs=31.3
Q ss_pred CCCcEEEEccCCChHHHHHH-hhh--hhCCCcEEEEccChhhHHHHHHHHHHcCC
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPA--LICPGITLVISPLVSLIQDQIMHLLQANI 458 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-Lpa--L~~~g~~LVIsPtraL~~dqv~~L~~~gI 458 (1136)
.|.-+++.+|+|+|||...+ +.. +..++.++|+.--.. ..+....+...|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 46679999999999997633 322 234667888875433 3334444444443
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.38 E-value=1.6 Score=43.15 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.4
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
...+++.+|+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999764
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.74 E-value=0.98 Score=46.46 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=14.0
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 126
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.56 E-value=0.76 Score=47.22 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=24.9
Q ss_pred CCcEEEEccCCChHHHHHH-hhh--hhCCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPA--LICPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-Lpa--L~~~g~~LVIsPtr 443 (1136)
|+=.++.+|.|+|||...+ +.. ...+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 5557899999999998753 221 12456788888874
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.52 E-value=0.24 Score=52.96 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=24.8
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtr 443 (1136)
|.=.++.+|+|+|||...+--+. ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 45588899999999986432222 2356788887765
No 128
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=89.47 E-value=0.59 Score=57.54 Aligned_cols=116 Identities=21% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHC--CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHH
Q 001155 393 SFRPNQREIINATMS--GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWT 470 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~ 470 (1136)
.++.-|.+++..++. ..-.++.|+-|.|||.+.-+.+-...+.++|.+|+.+=++ .+.++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~-~l~~~~~~-------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD-VLAQFAGE-------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH-HHHHHHGG--------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH-HHHHHhhC--------------
Confidence 578999999998886 3347899999999997765555444566799999987654 22222110
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccccccCCCCccchhhhhhhhccCCCC
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 550 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~ 550 (1136)
.|-|..|+.+. ......++||||||=.|.- ..+......-
T Consensus 240 ----------------~i~~~~Pd~~~------------~~~~~~dlliVDEAAaIp~------------pll~~ll~~~ 279 (671)
T 2zpa_A 240 ----------------KFRFIAPDALL------------ASDEQADWLVVDEAAAIPA------------PLLHQLVSRF 279 (671)
T ss_dssp ----------------GCCBCCHHHHH------------HSCCCCSEEEEETGGGSCH------------HHHHHHHTTS
T ss_pred ----------------CeEEeCchhhh------------hCcccCCEEEEEchhcCCH------------HHHHHHHhhC
Confidence 13455665431 1112379999999998731 1222223344
Q ss_pred CEEEEeeccchhh
Q 001155 551 PVLALTATATASV 563 (1136)
Q Consensus 551 ~iv~LSAT~~~~v 563 (1136)
+.++||.|...+-
T Consensus 280 ~~v~~~tTv~GYE 292 (671)
T 2zpa_A 280 PRTLLTTTVQGYE 292 (671)
T ss_dssp SEEEEEEEBSSTT
T ss_pred CeEEEEecCCcCC
Confidence 5788888876653
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.24 E-value=0.79 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.5
Q ss_pred ccCCHHHHHHHHHHHHHhcchhhh
Q 001155 846 KHLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 846 k~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
...+...+.+++..|...|++...
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 346778889999999999988753
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.10 E-value=0.77 Score=51.55 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=19.1
Q ss_pred ccCCHHHHHHHHHHHHHhcchhhh
Q 001155 846 KHLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 846 k~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
..++...+..++..|...|++...
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 328 EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 346678888999999999988754
No 131
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.97 E-value=1 Score=44.82 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=53.4
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||.++++..+......|...|+.+..++|+++..++...+..+.. +..+|||+|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR--GEYRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEECC
Confidence 36789999999999999999999999999999999999988888887775 6889999993
No 132
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.93 E-value=0.96 Score=45.59 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=53.1
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||.++++..+......|...|+.+..++|+++..++...+..+.. +..+|+|+|.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD--GKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT--TSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEec
Confidence 5789999999999999999999999999999999999998888888775 6889999994
No 133
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.89 E-value=0.57 Score=49.01 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.2
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
-.++.++.|+|||..+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999998654
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.35 E-value=0.64 Score=46.12 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.++.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999753
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.32 E-value=1.4 Score=45.36 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=24.4
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPL 442 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPt 442 (1136)
|.-+++.+|+|+|||..+..-+...++.++++.--
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 55689999999999976543333446677777643
No 136
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.95 E-value=1.2 Score=44.38 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=53.4
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||.++++.-+......|...++.+..++|+++..++...+..... +..+|+|+|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEcC
Confidence 36789999999999999999999999999999999999988888887765 7889999994
No 137
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.84 E-value=1 Score=50.61 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHH----CCC---cEEEEccCCChHHHHHH
Q 001155 395 RPNQREIINATM----SGH---DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 395 rpiQ~eaI~~il----~g~---dvLV~APTGsGKTl~y~ 426 (1136)
.|+|.+++..+. +|+ .+++.+|.|+|||..+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 455555554432 343 38999999999998754
No 138
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.84 E-value=0.76 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.7
Q ss_pred CCcEEEEccCCChHHHHHHhhhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALI 431 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~ 431 (1136)
.+.+|+.+|+|+|||..+..-+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999876544333
No 139
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.79 E-value=1.4 Score=45.97 Aligned_cols=36 Identities=17% Similarity=-0.015 Sum_probs=26.4
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtr 443 (1136)
...++|..++|-|||.+++--++ -.+.+++|+.=.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 34799999999999998765554 3467787775444
No 140
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.62 E-value=2.4 Score=43.68 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=58.9
Q ss_pred CChHHHHHHhhhhh-CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 418 GGGKSLTYQLPALI-CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 418 GsGKTl~y~LpaL~-~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...|.. +++-.+. ..+++||.++++.-+......|...|+++..++|+++..++...+..+.. +..+|+|+|.
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE--GKKDVLVATD 112 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH--TSCSEEEECH
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 345643 3444443 36789999999999999999999999999999999999888888887775 6889999993
No 141
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.47 E-value=1.5 Score=44.31 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=53.6
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||.++++.-+......|...|+++..++|+++..++...+..+.. +..+|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--FQRRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC--CCCcEEEECC
Confidence 35689999999999999999999999999999999999988888888775 7889999994
No 142
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.09 E-value=1.4 Score=46.16 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=54.3
Q ss_pred hCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 431 ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 431 ~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...+.+||.++++.-+......|...|+.+..++|+++..++...+..... +..+|+|+|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ--GEVRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS--SSCCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC--CCCeEEEecC
Confidence 347899999999999998899999999999999999999999888888775 7889999994
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.01 E-value=3.6 Score=48.29 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=33.6
Q ss_pred cEEEEccCCChHHHHHH-hh-hhhC-CCcEEEEc--cChhhHHHHHHHHHHc-CCCeE
Q 001155 410 DVFVLMPTGGGKSLTYQ-LP-ALIC-PGITLVIS--PLVSLIQDQIMHLLQA-NIPAT 461 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-Lp-aL~~-~g~~LVIs--PtraL~~dqv~~L~~~-gI~v~ 461 (1136)
-+++++++|+|||.+.. |. .+.. +.++++|. |.+.-+.+|...+... ++++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 58889999999997643 22 2222 45666666 6666666777766554 55544
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.94 E-value=2 Score=46.93 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=15.4
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
.++++.+|+|+|||..+.
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998753
No 145
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.68 E-value=1.1 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCChHHHHHHhhh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
..+.+++.+|+|+|||..+..-+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 35679999999999998764433
No 146
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=86.55 E-value=0.86 Score=45.93 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHH---------CCCcEEEEccCCChHHHHHH
Q 001155 395 RPNQREIINATM---------SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 395 rpiQ~eaI~~il---------~g~dvLV~APTGsGKTl~y~ 426 (1136)
.+.|.+++..+. .|+.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666666553 36789999999999997643
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.50 E-value=1.9 Score=48.14 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=18.4
Q ss_pred ccCCHHHHHHHHHHHHHhcchhhh
Q 001155 846 KHLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 846 k~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
..++...+...+..|...|++...
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 345677888889999999988653
No 148
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=86.34 E-value=0.54 Score=58.02 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH--hhhhh-----CCCcEEEEccChhhHHHHHHHHHHc
Q 001155 393 SFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ--LPALI-----CPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 393 ~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~--LpaL~-----~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
.|++-|.+++.. .+..++|.|+.|||||.+-. +.-+. ....+|+|+.|+..+.+...++.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 479999999975 35689999999999997632 22121 2457999999999999888887664
No 149
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.29 E-value=1 Score=49.90 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=26.8
Q ss_pred ccceeeeecccccc-ccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHH
Q 001155 514 LLARIVIDEAHCVS-QWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQA 570 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls-~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~ 570 (1136)
..++|+|||+|.+. .. ....|..+....+....+.+++.....+...+...
T Consensus 105 ~~~vliiDEi~~l~~~~------~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE------SQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp CEEEEEEESCCCGGGHH------HHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred CCeEEEEECCcccCcHH------HHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 46889999999985 21 12223333333333334445555554444444444
No 150
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.23 E-value=1.8 Score=46.75 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=16.3
Q ss_pred CcEEEEccCCChHHHHHHhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lp 428 (1136)
..+++.+|+|+|||..+..-
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46999999999999876433
No 151
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.20 E-value=0.59 Score=48.68 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
+..+++.+|+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999754
No 152
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.16 E-value=1.3 Score=45.30 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=44.4
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeC
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~T 492 (1136)
.+++||.++++.-+......|...|+.+..+.|+++..++...+..+.. +..+|||+|
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT 103 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVAT 103 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH--TSSSEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEc
Confidence 5789999999999999999999999999999999988888877777765 688999998
No 153
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=86.14 E-value=0.78 Score=57.24 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH--hhhhh-C----CCcEEEEccChhhHHHHHHHHHHc
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ--LPALI-C----PGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~--LpaL~-~----~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
..|++-|.+|+.. .+..++|.|+.|||||.+-. +.-++ . ...+|+|+.|+..+.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 35689999999999997532 22222 1 357999999999998887777653
No 154
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.04 E-value=0.95 Score=50.23 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.5
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
..+++.+|+|+|||..+.
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999997653
No 155
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.90 E-value=1.9 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=18.1
Q ss_pred CCcEEEEccCCChHHHHHHhhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL 430 (1136)
.+.+|+.+|+|+|||..+..-+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999987654443
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.79 E-value=0.85 Score=54.53 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.1
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.+++++|+|+|||.++..-+
T Consensus 78 ~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999998765443
No 157
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.62 E-value=3.3 Score=46.04 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCcEEEEccCCChHHHHHH-hh--hhhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEec-C-----CCCHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LP--ALICPGITLVISPLVSLIQDQIMHLLQA--NIPATFLS-G-----NMEWTEQQEIL 476 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-Lp--aL~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~-g-----~~~~~~~~~~l 476 (1136)
|.=++|.|++|+|||..++ +. +...+..++|++---+ ..+...++... ++....+. + +..+..-....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s-~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~ 146 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 146 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC-HHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHH
Confidence 5569999999999996543 22 2233467888774322 23344444332 44432221 1 11222222222
Q ss_pred HHHhcccCcceEEEe-ChhhhhchHHHHHHHHhhhhhhccc--eeeeecccccc
Q 001155 477 RELNSDYCKYKLLYV-TPEKVAKSDVLLRQLESLNARELLA--RIVIDEAHCVS 527 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV~-TPEkL~~~d~l~r~l~~l~~~~~l~--lVVIDEAH~ls 527 (1136)
..+. ...+.+. +|+ +. .+.+...+..+.....++ +||||-.+.+.
T Consensus 147 ~~l~----~~~i~i~d~~~-~~-~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~ 194 (315)
T 3bh0_A 147 GEIS----NSNINIFDKAG-QS-VNYIWSKTRQTKRKNPGKRVIVMIDYLQLLE 194 (315)
T ss_dssp HHHH----TSCEEEECCSC-CB-HHHHHHHHHHHHHTSSSCCEEEEEECGGGSB
T ss_pred HHHh----CCCEEEECCCC-CC-HHHHHHHHHHHHHhcCCCCeEEEEeCchhcC
Confidence 2221 2345443 332 11 133333444443333578 99999999875
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.58 E-value=1.6 Score=49.07 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHHHHhcchhhh
Q 001155 847 HLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 847 ~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
.++...+.+++..|...|++...
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 329 PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCeEEe
Confidence 46778899999999999998753
No 159
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.06 E-value=1.5 Score=48.71 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.5
Q ss_pred CcEEEEccCCChHHHHHHhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lp 428 (1136)
+.+|+.+|+|+|||..+..-
T Consensus 52 ~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 56999999999999876433
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.02 E-value=2.9 Score=46.70 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=25.7
Q ss_pred CCcEEEEccCCChHHHHHH-hhhh--hC------CCcEEEEccChhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPAL--IC------PGITLVISPLVSL 445 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL--~~------~g~~LVIsPtraL 445 (1136)
|.-+++.+|+|+|||...+ +..- .. ++.++||.--.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~ 153 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTF 153 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 5669999999999996543 3322 12 4678888765443
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.56 E-value=2.8 Score=46.57 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.9
Q ss_pred CcEEEEccCCChHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y 425 (1136)
.++++.+|+|+|||..+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999764
No 162
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.09 E-value=3 Score=40.49 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=43.6
Q ss_pred HHCCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHH-HHcCCCeEEec--CCCCHHHHHHHHHHHhc
Q 001155 405 TMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHL-LQANIPATFLS--GNMEWTEQQEILRELNS 481 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L-~~~gI~v~~L~--g~~~~~~~~~~l~~l~~ 481 (1136)
+..+.++++.+|+|+|||.++..-.-... .++.+...++..+....+ ....-.+.++. +......+...+..+..
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~ 101 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGK 101 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCC--CeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHh
Confidence 34567899999999999987643322222 344444444443322222 22222233332 33444444444443332
Q ss_pred c-cCcceEEEeChhh
Q 001155 482 D-YCKYKLLYVTPEK 495 (1136)
Q Consensus 482 ~-~~~~~ILV~TPEk 495 (1136)
. .....+|.+|-..
T Consensus 102 ~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 102 AERCRVRVIASCSYA 116 (143)
T ss_dssp HTTTTCEEEEEEEEC
T ss_pred CCCCCEEEEEecCCC
Confidence 1 1235566666433
No 163
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.94 E-value=3.2 Score=47.23 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=24.0
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPL 442 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPt 442 (1136)
|+-++|.++.|+|||..++--+ ...+..++||..-
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5679999999999997653222 2235567777653
No 164
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.91 E-value=2 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=17.1
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.+++.+|+|+|||..+..-+
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 579999999999998765443
No 165
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=83.51 E-value=1.2 Score=58.92 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHHH---hhhhhC------CCcEEEEccChhhHHHHHHHHHH
Q 001155 392 HSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQ---LPALIC------PGITLVISPLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 392 ~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~---LpaL~~------~g~~LVIsPtraL~~dqv~~L~~ 455 (1136)
..+++-|.++|..- +.+++|.|+-|||||.+-. +-.+.. ...+|+|++|++.+.++..++..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 35899999998754 7799999999999998743 222222 23799999999999888877765
No 166
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=83.32 E-value=1.9 Score=48.43 Aligned_cols=75 Identities=11% Similarity=-0.104 Sum_probs=51.0
Q ss_pred HHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecccccccc-----CCCccEEEEcCCCCCHhH-HHHHhc
Q 001155 614 FYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVAFGMGIN-----KPDVRFVIHHSLPKSIEG-YHQECG 687 (1136)
Q Consensus 614 ~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~alg~GID-----lP~V~~VIh~d~P~Sie~-YiQriG 687 (1136)
+..++...|+...-+.|.....+++ -.+....|.+.|.+.+-|+| +...++||-||..+++.. .+|.+-
T Consensus 141 lE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~ 215 (328)
T 3hgt_A 141 LEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLL 215 (328)
T ss_dssp HHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHH
T ss_pred HHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHH
Confidence 3344446788888888885543221 12456677666887777886 678999999999999887 499999
Q ss_pred ccCCCC
Q 001155 688 RAGRDG 693 (1136)
Q Consensus 688 RAGR~G 693 (1136)
|+.|.|
T Consensus 216 r~~R~~ 221 (328)
T 3hgt_A 216 QYKRER 221 (328)
T ss_dssp CCC---
T ss_pred HHhhhc
Confidence 999974
No 167
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.18 E-value=3.9 Score=39.73 Aligned_cols=91 Identities=10% Similarity=0.051 Sum_probs=45.2
Q ss_pred HCCCcEEEEccCCChHHHHHHhhhhhC---CCcEEEEccChhhHHHHHHHHHHcCCCeEEec--CCCCHHHHHHHHHHHh
Q 001155 406 MSGHDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMHLLQANIPATFLS--GNMEWTEQQEILRELN 480 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y~LpaL~~---~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~--g~~~~~~~~~~l~~l~ 480 (1136)
..+.++++.+|+|+|||.++..-.-.. ....++-+....-..+....+....-.+.++. ...+...+...+..+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~ 101 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQS 101 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHh
Confidence 356789999999999998876443322 22222322221100111122222211223332 3345555555555554
Q ss_pred cccCcceEEEeChhhh
Q 001155 481 SDYCKYKLLYVTPEKV 496 (1136)
Q Consensus 481 ~~~~~~~ILV~TPEkL 496 (1136)
.......||.+|-.-+
T Consensus 102 ~~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 102 QEHRPFRLIGIGDTSL 117 (145)
T ss_dssp SSSCSSCEEEEESSCH
T ss_pred hcCCCEEEEEECCcCH
Confidence 4344567777776544
No 168
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.14 E-value=3.3 Score=46.01 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=53.6
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+.+||.++++.-+......|...|+.+..++|+++..++...+..+.. +..+|+|+|-
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLVaT~ 86 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ--GEVRVLVATD 86 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH--TSCCEEEECS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEec
Confidence 47899999999999998899998999999999999999988888887765 6889999994
No 169
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.97 E-value=6 Score=41.21 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=24.5
Q ss_pred CCCcEEEEccCCChHHHHHHhhhh--hC-------CCcEEEEccCh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPAL--IC-------PGITLVISPLV 443 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~LpaL--~~-------~g~~LVIsPtr 443 (1136)
.|.-+++.+|+|+|||.....-+. .. ...+++|.-..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 356799999999999976543332 12 45677776443
No 170
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.99 E-value=3.6 Score=47.02 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=24.1
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVS 444 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtra 444 (1136)
|.-++|.+|+|+|||..++--+ ...++.++||..--+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4568999999999997543222 123566777765433
No 171
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.92 E-value=7.1 Score=45.64 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=32.1
Q ss_pred cEEEEccCCChHHHHHH-hhhh--hCCCcEEEEc--cChhhHHHHHHHHHHc-CCCeE
Q 001155 410 DVFVLMPTGGGKSLTYQ-LPAL--ICPGITLVIS--PLVSLIQDQIMHLLQA-NIPAT 461 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-LpaL--~~~g~~LVIs--PtraL~~dqv~~L~~~-gI~v~ 461 (1136)
-+++++|+|+|||.... |... ..+.+++++. +.+.-+.+|...+... ++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~ 156 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 156 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCcee
Confidence 57888999999997643 2222 2356666655 4555556666666553 55544
No 172
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.86 E-value=5.4 Score=44.96 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=25.6
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---h------CCCcEEEEccChh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---I------CPGITLVISPLVS 444 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~------~~g~~LVIsPtra 444 (1136)
|.-++|.+|+|+|||...+--+. . .++.++||.--..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 45689999999999975443222 2 3567888886554
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.58 E-value=2.8 Score=47.52 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHhcchhhh
Q 001155 847 HLAKSEASRILRHLVIEDFLMEE 869 (1136)
Q Consensus 847 ~~s~~~~~~li~~l~~~g~L~e~ 869 (1136)
.++...+..++..|...|+|...
T Consensus 349 ~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 349 PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEee
Confidence 45677888899999999988653
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.37 E-value=2.5 Score=49.39 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
..+++.+|+|+|||..+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 175
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.30 E-value=4.2 Score=46.07 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=23.6
Q ss_pred CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPL 442 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPt 442 (1136)
|+-++|.+|.|+|||...+--+ ...++.++||.--
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5669999999999997543222 2235677777643
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.23 E-value=2.5 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=16.9
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
..+|+.+|+|+|||..+.+-+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 369999999999998765443
No 177
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=80.66 E-value=2.3 Score=46.48 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.8
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
++++.+|+|+|||..+.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998653
No 178
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.03 E-value=5.3 Score=46.83 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCcEEEEccCCChHHHHHHhh---hhhCCCcEEEEccChhhHHHHHHHHHH--cCCCeEEe-cCC-----CCHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP---ALICPGITLVISPLVSLIQDQIMHLLQ--ANIPATFL-SGN-----MEWTEQQEIL 476 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp---aL~~~g~~LVIsPtraL~~dqv~~L~~--~gI~v~~L-~g~-----~~~~~~~~~l 476 (1136)
|.=++|.|++|+|||..++-- +...+..++|++---+ ..+.+.++.. .++....+ .|. ..+..-....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~ 275 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 275 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHH
Confidence 555899999999999754322 2234567888764321 1223333322 24443222 121 1222222222
Q ss_pred HHHhcccCcceEEE-eChhhhhchHHHHHHHHhhhhhhccc--eeeeecccccc
Q 001155 477 RELNSDYCKYKLLY-VTPEKVAKSDVLLRQLESLNARELLA--RIVIDEAHCVS 527 (1136)
Q Consensus 477 ~~l~~~~~~~~ILV-~TPEkL~~~d~l~r~l~~l~~~~~l~--lVVIDEAH~ls 527 (1136)
..+. ...+.| -+|+ +. .+.+...+..+.....++ +||||=.+.+.
T Consensus 276 ~~l~----~~~l~i~d~~~-~s-~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~ 323 (444)
T 3bgw_A 276 GEIS----NSNINIFDKAG-QS-VNYIWSKTRQTKRKNPGKRVIVMIDYLQLLE 323 (444)
T ss_dssp HHHH----TSCEEEECCSS-CB-HHHHHHHHHHHHHHSCSSCEEEEEECSTTSB
T ss_pred HHHh----cCCEEEECCCC-CC-HHHHHHHHHHHHHHhCCCCeEEEEecHHhcc
Confidence 2222 234444 3333 11 133333444443334589 99999999885
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.47 E-value=4.9 Score=45.74 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.1
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSL 445 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL 445 (1136)
|.-++|.+|+|+|||...+-.+. ..++.++||..-.++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 45689999999999965432221 235677777765444
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.46 E-value=2.7 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCcEEEEccCCChHHHHHHhhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL 430 (1136)
.+.+++.+|+|+|||..+..-+-
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999987654433
No 181
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=79.26 E-value=12 Score=38.35 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCCcEEEEccCCChHHHHH-Hhhhh--hCCCcEEEEcc
Q 001155 407 SGHDVFVLMPTGGGKSLTY-QLPAL--ICPGITLVISP 441 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y-~LpaL--~~~g~~LVIsP 441 (1136)
.|.-+++.+|+|+|||... ++... ..++.++++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3667899999999999643 33322 23567777764
No 182
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.24 E-value=5.1 Score=45.37 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......|...|+.+..++|+++..++...+..+.. +..+|||+|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TSSCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc--CCCCEEEECC
Confidence 36789999999999999999999999999999999999888888887765 6889999995
No 183
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=78.68 E-value=1.4 Score=49.37 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.3
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+++.+|.|+|||..+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999997653
No 184
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.32 E-value=6.8 Score=42.59 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=14.2
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
++++.+|.|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999764
No 185
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.40 E-value=12 Score=43.35 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.6
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
-+.+|+.+|+|+|||+.+-.
T Consensus 182 prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHH
Confidence 36799999999999987543
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.33 E-value=6.2 Score=54.26 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=55.3
Q ss_pred HHHHHC------CCcEEEEccCCChHHHHHHh---hhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHH
Q 001155 402 INATMS------GHDVFVLMPTGGGKSLTYQL---PALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQ 472 (1136)
Q Consensus 402 I~~il~------g~dvLV~APTGsGKTl~y~L---paL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~ 472 (1136)
+..++. ++++++++|+|+|||..+.- .+...+.+++||..--++.... ..+.|+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 666666 67899999999999976532 2334567888888665443322 333343321
Q ss_pred HHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeeccccc
Q 001155 473 QEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCV 526 (1136)
Q Consensus 473 ~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~l 526 (1136)
. +.|..|+-. ..+.+.+..+.....+++|||||+.-+
T Consensus 1481 ------------~--l~v~~~~~~---E~~l~~~~~lvr~~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1481 ------------N--LLCSQPDTG---EQALEICDALARSGAVDVIVVDSVAAL 1517 (2050)
T ss_dssp ------------T--CEEECCSSH---HHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred ------------h--ceeecCChH---HHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 1 234444432 122233333333345899999999755
No 187
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=76.70 E-value=2.3 Score=44.41 Aligned_cols=36 Identities=28% Similarity=0.170 Sum_probs=22.3
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccC
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPL 442 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPt 442 (1136)
.|+=.++.+|.|+|||.-.+-.+ ...+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 35568999999999995322111 1224566666665
No 188
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=76.45 E-value=4.9 Score=44.63 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=27.5
Q ss_pred ccceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHH
Q 001155 514 LLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDV 567 (1136)
Q Consensus 514 ~l~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI 567 (1136)
..+++||||||.+... ....|.......|..-++.|.++-+..+...|
T Consensus 82 ~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp SSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECChHhChHHH
Confidence 4688999999998532 12334445555554445555555554443333
No 189
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=75.84 E-value=5.1 Score=45.15 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=54.2
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......|...++.+..++|++...++...+..+.. +..+|||+|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT--TSCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC--CCCcEEEEcC
Confidence 46789999999999999999999999999999999999999888888775 6889999995
No 190
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.51 E-value=17 Score=40.11 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc--cChhhHHHHHHHHHH-cCCCe
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS--PLVSLIQDQIMHLLQ-ANIPA 460 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs--PtraL~~dqv~~L~~-~gI~v 460 (1136)
++-+++++++|+|||... .|.... .+++++++. +.+..+.+|...+.. .|+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v 156 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV 156 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEE
Confidence 345778899999999654 333322 356666655 445556666655543 35554
No 191
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.26 E-value=6.2 Score=43.52 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......|...|+.+..++|+++...+...+..+.. +..+|+|+|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ--KKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT--TSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc--CCCeEEEECC
Confidence 36689999999999999999999999999999999999988888887765 6889999994
No 192
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.25 E-value=5.5 Score=44.42 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=53.4
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||+++++.-+......|...++.+..++|+++..++...+..+.. +..+|||+|.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~ 301 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE--GRSKVLITTN 301 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT--TSCCEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC--CCCCEEEECC
Confidence 5789999999999999999999999999999999999999888888776 6789999985
No 193
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.07 E-value=19 Score=41.82 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCcEEEEccCCChHHHHHH-hhhhh--CCCcEEEEc--cChhhHHHHHHHHHH-cCCCe
Q 001155 408 GHDVFVLMPTGGGKSLTYQ-LPALI--CPGITLVIS--PLVSLIQDQIMHLLQ-ANIPA 460 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~-LpaL~--~~g~~LVIs--PtraL~~dqv~~L~~-~gI~v 460 (1136)
++-++++++.|+|||.... |..+. .+++++++. +.+..+.+|...+.. .|+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 4457788999999997543 33222 255666655 445555555555432 24444
No 194
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=74.20 E-value=6.5 Score=43.96 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=53.6
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......|...|+.+..++|+++..++...+..+.. +..+|||+|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--FQRRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TCCSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc--CCCcEEEECC
Confidence 46789999999999999999999999999999999999888888887765 6889999994
No 195
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=74.02 E-value=5.4 Score=43.31 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.7
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+++.+|+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 196
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=73.74 E-value=6.4 Score=44.33 Aligned_cols=60 Identities=8% Similarity=0.139 Sum_probs=53.4
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......|...|+.+..++|+++..++...+..+.. +..+|||+|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ--GKVRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT--TSSSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc--CCCcEEEEcC
Confidence 35789999999999999999999999999999999999988888888765 6789999994
No 197
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.40 E-value=14 Score=43.45 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCCCCCCCcchHHHHHHHHHhhCCCCCCHHHHHHHHHHH--CCCcEEEEccCCChHHHHHHh
Q 001155 368 QKWSSWDFPWTKKLEANNKKVFGNHSFRPNQREIINATM--SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 368 ~~w~~~~fp~s~~l~~~lk~~fG~~~lrpiQ~eaI~~il--~g~dvLV~APTGsGKTl~y~L 427 (1136)
-.|+ +....+...+.+++..-+.-.+| +.+..+- --+.+|+.+|.|+|||+.+-.
T Consensus 206 vt~~--DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 206 VTYS--DVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp CCCS--SCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHHHH
T ss_pred CCHH--HhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHHHH
Confidence 4455 44545666666665421110111 2222221 246799999999999986543
No 198
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=73.00 E-value=11 Score=44.74 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCcEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHc-CCCeEEecCC-------CC--H---HHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQA-NIPATFLSGN-------ME--W---TEQQE 474 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~-------~~--~---~~~~~ 474 (1136)
+....+.+-||+|||++..-.+-..++.+|||+|...++.+.+..|..+ +-.+..+-+- .. . ..+..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHH
Confidence 4568899999999998643333344678999999999999999999876 3334333321 01 1 22334
Q ss_pred HHHHHhcccCcceEEEeChhhhh
Q 001155 475 ILRELNSDYCKYKLLYVTPEKVA 497 (1136)
Q Consensus 475 ~l~~l~~~~~~~~ILV~TPEkL~ 497 (1136)
.+..|.. +...|||+|+..+.
T Consensus 94 ~l~~L~~--~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 94 TLYQLPT--MQRGVLIVPVNTLM 114 (483)
T ss_dssp HHHHGGG--CCSSEEEEEHHHHH
T ss_pred HHHHHHh--CCCCEEEEEHHHHh
Confidence 4445443 34568889888775
No 199
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=72.98 E-value=7.9 Score=42.84 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
|.-++|.+|+|+|||...
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 556899999999999654
No 200
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=72.94 E-value=3.6 Score=44.14 Aligned_cols=37 Identities=27% Similarity=0.151 Sum_probs=25.6
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVS 444 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtra 444 (1136)
|+=.++++|.|+|||...+--+. ..+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 55578899999999976543332 23567787777753
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=72.04 E-value=17 Score=40.71 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=29.0
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc-cC-hhhHHHHHHHHHH-cCCCe
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS-PL-VSLIQDQIMHLLQ-ANIPA 460 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs-Pt-raL~~dqv~~L~~-~gI~v 460 (1136)
|.-+.+++|+|+|||... .|..+. .++.++++. ++ +.-..+|...+.+ .|+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~ 187 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV 187 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceE
Confidence 455889999999999753 233222 245555443 33 2234455555543 34433
No 202
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=71.98 E-value=7 Score=44.20 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
..+++||+++++.-+......|...|+.+..++|+++..++...+..+.. +..+|||+|.-
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~ 335 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS--GASRVLISTDV 335 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH--TSSCEEEECGG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEECCh
Confidence 35789999999999999999999999999999999999888888887775 68899999963
No 203
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=71.84 E-value=23 Score=39.26 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc--cChhhHHHHHHHHHH-cCCCe
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS--PLVSLIQDQIMHLLQ-ANIPA 460 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs--PtraL~~dqv~~L~~-~gI~v 460 (1136)
++-+++++|+|+|||... .|..+. .+++++++. +.+.-+.+|+..+.. .++++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 345789999999999653 333332 355666654 344444455554433 35544
No 204
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=71.18 E-value=4.5 Score=47.40 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcC---CCCHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Q 001155 951 AKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRV---PRTEEELLEINGIGKAKVSKYGVRLLETIEST 1022 (1136)
Q Consensus 951 ~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~---P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~ 1022 (1136)
.++++.|+.+++++|++ .++||=+|++.+.|+.++... +..+.+++...|+..=+.+-+|+.+++.+..+
T Consensus 363 ~~~~~~l~~~~~~~a~~--~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~l~~~g~~~Wr~~~~~~~~~~~~~~~ 435 (440)
T 3cym_A 363 LQVLNRVRKAVSQIAED--TRTPVEIVIKPQYLRNLCWTDEPRKRDVARFLSEQGARDWQVSLVAESVSRAIEGH 435 (440)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCCHHHHSCHHHHHHHHCSSCGGGCCHHHHHHHHTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH--cCCCHHHcCCHHHHHHHhCcCCCChhhHhHHHhhccCCCchHHHHHHHHHHHHhcc
Confidence 57899999999999999 799999999999999999542 45678888999999999999999999998754
No 205
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.00 E-value=8.7 Score=52.13 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
|.-+++.+|+|+|||..++--+. ..++.++|++---++-+ +. ....|+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~q--l~-A~~lGvd~------------------------ 784 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IY-ARKLGVDI------------------------ 784 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH--HH-HHHTTCCG------------------------
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHH--HH-HHHcCCCh------------------------
Confidence 45699999999999975432221 23445666653322211 11 12222211
Q ss_pred cceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 485 KYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
-+++|..+..+ ..+...+..+.....+++||||++..+.
T Consensus 785 -~~L~i~~~~~l---eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 -DNLLCSQPDTG---EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp -GGCEEECCSSH---HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -hheEEecCCcH---HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12455555544 2333444433333468999999999885
No 206
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=70.81 E-value=11 Score=45.85 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=54.5
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
.+..+||.++++.-+.+....|...|+.+..++|+++..++...+..+.. +..+|||+|--
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~VlVAT~a 326 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVA 326 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSSSEEEECTT
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEech
Confidence 35789999999999999999999999999999999999999888888775 78899999953
No 207
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=70.39 E-value=1.5 Score=45.94 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCcEEEEccCCChHHHHH-Hhhh--h-hCCCcEEEEccChhhHHHHHHHHHHc
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPA--L-ICPGITLVISPLVSLIQDQIMHLLQA 456 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~Lpa--L-~~~g~~LVIsPtraL~~dqv~~L~~~ 456 (1136)
|.-+++.|++|+|||... ++.+ + ..+..++|++---+ ..+....+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHc
Confidence 556999999999999643 3332 2 23566777764322 33444455444
No 208
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=70.26 E-value=10 Score=42.56 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=19.6
Q ss_pred CCCcEEEEccCCChHHHHHHhhhhhC
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPALIC 432 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~LpaL~~ 432 (1136)
....+++.+|+|+|||.++..-+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999875544333
No 209
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=70.05 E-value=3.8 Score=43.44 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=23.0
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtr 443 (1136)
|.=.++++|.|+|||...+--+. ..+.+++++-|.+
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 45578999999999974332221 2255677777765
No 210
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.99 E-value=14 Score=42.71 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
...+||+++++.-+......|.+.|+++..++|++...++...+..+.. +..+|||+|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN--GSMKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT--SSCSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEch
Confidence 4459999999999999999999999999999999999999888888776 7889999996
No 211
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=69.51 E-value=8.9 Score=45.74 Aligned_cols=61 Identities=10% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
.+..+||.++++.-+......|...|+.+..++|+++..++...+..+.. +..+|||+|.-
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlVaT~a 295 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR--DDLQIVVATVA 295 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEech
Confidence 45689999999999999999999999999999999999988888888776 67899999974
No 212
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=69.11 E-value=26 Score=41.60 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=29.2
Q ss_pred cEEEEccCCChHHHHH-Hhhhhh--CCCcEEEE-ccC-hhhHHHHHHHH-HHcCCCeE
Q 001155 410 DVFVLMPTGGGKSLTY-QLPALI--CPGITLVI-SPL-VSLIQDQIMHL-LQANIPAT 461 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVI-sPt-raL~~dqv~~L-~~~gI~v~ 461 (1136)
-+.+++|+|+|||... .|..+. .+|.++++ ..+ +.-..+|...+ .+.++.+.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV 352 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 352 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEE
Confidence 4789999999999753 333332 25666665 333 32234455554 23355443
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=68.85 E-value=10 Score=47.29 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=16.2
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.++++++|+|+|||....
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 5679999999999998653
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.67 E-value=8.6 Score=48.79 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..++++++|+|+|||....
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999997653
No 215
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=68.03 E-value=2.7 Score=48.68 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=29.7
Q ss_pred CCcEEEEccCCChHHHHH--Hhhhhh-CCCcEEEEccChhhHH
Q 001155 408 GHDVFVLMPTGGGKSLTY--QLPALI-CPGITLVISPLVSLIQ 447 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y--~LpaL~-~~g~~LVIsPtraL~~ 447 (1136)
..+++|+|+||+|||... +++-+. .+..++|+=|--++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 468999999999999875 444443 4567777778877753
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=68.01 E-value=15 Score=37.64 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=24.1
Q ss_pred CCCcEEEEccCCChHHHHHHhhh-h-hC-------CCcEEEEccCh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA-L-IC-------PGITLVISPLV 443 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa-L-~~-------~g~~LVIsPtr 443 (1136)
.|.-+.+++|+|+|||.....-+ + .. .+.++++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 35568999999999997653332 2 21 44577776544
No 217
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=70.44 E-value=1.1 Score=44.83 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=49.3
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||.++++..+......|...|+.+..++|+++..++...+..+.. +..+|||+|.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~vLvaT~ 88 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE--GRVNVLVATD 88 (170)
Confidence 4578899999999988888888889999999999988887777776654 6788999983
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=67.05 E-value=16 Score=40.32 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCC-cEEEEc--cChhhHHHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPG-ITLVIS--PLVSLIQDQIMHLLQ 455 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g-~~LVIs--PtraL~~dqv~~L~~ 455 (1136)
++-+++++|+|+|||... .|.... ..| +++++. +.+.-+.+|+..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~ 158 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAE 158 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHH
Confidence 456889999999999754 333332 234 555554 344445556655543
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.29 E-value=32 Score=37.20 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=23.3
Q ss_pred CCCcEEEEccCCChHHHHHH-hhhhh--CCC-cEEEEcc
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPALI--CPG-ITLVISP 441 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-LpaL~--~~g-~~LVIsP 441 (1136)
.|.-++|.+|+|+|||.... +.... ..| .++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46678999999999997643 32222 224 6777764
No 220
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=66.03 E-value=5.5 Score=45.47 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHH
Q 001155 950 SAKLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIE 1020 (1136)
Q Consensus 950 ~~~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~ 1020 (1136)
...+++.|+.+++.+|++ .|+||-.|++.+.|+.++.-.|.+.++-.....+..=+.+-+|+.+++++.
T Consensus 303 ~~~~~~~l~~~~~~~a~~--~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~Wr~~~~~~~l~~~l~ 371 (375)
T 1yt3_A 303 YRKAFKAIKSLITDVSET--HKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQ 371 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTCCHHHHCCHHHHHHHHHHHTTCSCCSSCCGGGSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCHHHcCCHHHHHHHHhhcccCCCcchhhhhhcchHHHHHHHHHHHHHh
Confidence 367899999999999999 899999999999999999643322111112223567788899999998875
No 221
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=65.23 E-value=13 Score=41.84 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=48.7
Q ss_pred cEEEEccCCChHHHHHHhhh---hhC--CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccC
Q 001155 410 DVFVLMPTGGGKSLTYQLPA---LIC--PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYC 484 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa---L~~--~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~ 484 (1136)
-++|.+|.|+|||...+-.+ ... +++++||..--++-.. .+.++|+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~------------------------ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDP------------------------ 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCG------------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCH------------------------
Confidence 48899999999997543211 222 5678888776655332 244444421
Q ss_pred cceEEEeChhhhhchHHH-HHHHHhh--hhhhccceeeeeccccc
Q 001155 485 KYKLLYVTPEKVAKSDVL-LRQLESL--NARELLARIVIDEAHCV 526 (1136)
Q Consensus 485 ~~~ILV~TPEkL~~~d~l-~r~l~~l--~~~~~l~lVVIDEAH~l 526 (1136)
-++++..|..+. .+ ......+ .....+++||||=+..+
T Consensus 83 -d~llv~~~~~~E---~~~l~i~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 83 -ERVIHTPVQSLE---QLRIDMVNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp -GGEEEEECSBHH---HHHHHHHHHHHTCCTTCCEEEEEECSTTC
T ss_pred -HHeEEEcCCCHH---HHHHHHHHHHHHhhccCceEEEEeccccc
Confidence 125666665542 12 2222222 12235899999988876
No 222
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=64.11 E-value=39 Score=40.22 Aligned_cols=53 Identities=23% Similarity=0.115 Sum_probs=30.8
Q ss_pred cEEEEccCCChHHHHHH-hh-hhh-CCCcEEEEcc--ChhhHHHHHHHHHH-cCCCeEE
Q 001155 410 DVFVLMPTGGGKSLTYQ-LP-ALI-CPGITLVISP--LVSLIQDQIMHLLQ-ANIPATF 462 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-Lp-aL~-~~g~~LVIsP--traL~~dqv~~L~~-~gI~v~~ 462 (1136)
.+++++++|+|||..+. |. .+. .+.++++|.. .+..+.+|...+.. .++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 47888999999997542 22 222 2456666663 45555556554432 3555443
No 223
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=63.90 E-value=13 Score=44.33 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=52.4
Q ss_pred CCcEEEEccChhhHHHHHHHHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
...+||+++++.-+......|... ++.+..++|++....+..++..+.. +..+|||+|.-
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT~~ 401 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDV 401 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGG
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEcch
Confidence 668999999999998888888776 8999999999999998888888776 78899999863
No 224
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=63.60 E-value=13 Score=44.70 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCcEEEEccChhhHHHHHHHHHHc---CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQA---NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~---gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
..++||+++++.-+......|... ++.+..++|+++...+...+..+.. +..+|||+|--
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT~~ 350 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDV 350 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGG
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEEEcch
Confidence 568999999999999888888876 8999999999999988888887776 78899999863
No 225
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=63.34 E-value=10 Score=43.18 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecC--------CCCHHHHHHHHHHHhcccCcceEEEeC
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSG--------NMEWTEQQEILRELNSDYCKYKLLYVT 492 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g--------~~~~~~~~~~l~~l~~~~~~~~ILV~T 492 (1136)
.+.++||.++++.-+......|...|+++..++| +++..++...+..... +..+|||+|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--~~~~vLv~T 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--GEFNVLVAT 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH--TSCSEEEEC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc--CCceEEEEC
Confidence 4789999999999999889999999999999999 7887888888877765 678999999
No 226
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=62.99 E-value=19 Score=44.33 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+.++||.++++..+......|...|+++..++|+++..++..++..+.. +..+|+|+|-
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~ 497 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDCLVGIN 497 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCceEEEccC
Confidence 47799999999999999999999999999999999999998888887765 7889999983
No 227
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.99 E-value=20 Score=41.34 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=24.6
Q ss_pred CCCcEEEEccCCChHHHHHH-hhh--hh------CCCcEEEEccCh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPA--LI------CPGITLVISPLV 443 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-Lpa--L~------~~g~~LVIsPtr 443 (1136)
.|.-++|++|.|+|||.... +.+ +. ..+.++||.--.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 35679999999999997654 222 11 235688887543
No 228
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=62.98 E-value=18 Score=44.40 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=63.5
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNA 511 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~ 511 (1136)
.+.++||+++++.-+......|...|+++..++|+++..++..++..+.. +..+|+|+|-- +. +. + .
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~-l~------~G---l-D 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINL-LR------EG---L-D 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCC-CS------TT---C-C
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecch-hh------CC---c-c
Confidence 46799999999999999999999999999999999999888888877765 78899999852 21 11 1 1
Q ss_pred hhccceeeeecccc
Q 001155 512 RELLARIVIDEAHC 525 (1136)
Q Consensus 512 ~~~l~lVVIDEAH~ 525 (1136)
...+++||+=+++.
T Consensus 511 ip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 511 IPEVSLVAILDADK 524 (661)
T ss_dssp CTTEEEEEETTTTC
T ss_pred cCCCCEEEEeCccc
Confidence 12367888877765
No 229
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.85 E-value=6.9 Score=44.13 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=47.6
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
.+++||+++++.-+......|...++.+..++|+++..++...+..+.. +..+|||+|.-
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~ 339 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS--GSSRVLITTDL 339 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC--C---CEEECSS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc--CCCcEEEECCc
Confidence 5689999999999999999999999999999999999888888888765 67889999863
No 230
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=62.79 E-value=45 Score=37.11 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=27.6
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc--cChhhHHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS--PLVSLIQDQIMHLL 454 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs--PtraL~~dqv~~L~ 454 (1136)
++-+.+++|+|+|||... .|..+. .+++++++. +.+.-+.+|...+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~ 156 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWI 156 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 445788899999999654 333332 356666654 33333444555554
No 231
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.76 E-value=24 Score=41.57 Aligned_cols=35 Identities=11% Similarity=-0.108 Sum_probs=23.6
Q ss_pred CCCcEEEEccCCChHHHHHH-hhh--hhC-CCcEEEEcc
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPA--LIC-PGITLVISP 441 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-Lpa--L~~-~g~~LVIsP 441 (1136)
.|.=++|.+++|+|||...+ +.. ... +..++|++-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 35568999999999997543 222 222 457888774
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.97 E-value=45 Score=38.76 Aligned_cols=44 Identities=25% Similarity=0.167 Sum_probs=26.7
Q ss_pred cEEEEccCCChHHHHHH-hh-hhh-C-CCcEEEEc--cChhhHHHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ-LP-ALI-C-PGITLVIS--PLVSLIQDQIMHL 453 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~-Lp-aL~-~-~g~~LVIs--PtraL~~dqv~~L 453 (1136)
.+++++++|+|||.+.. |. .+. . +.++++|. |.+..+.+|...+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~ 151 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETL 151 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhh
Confidence 57778999999997643 22 222 2 45566655 5555555555433
No 233
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=60.88 E-value=10 Score=45.17 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHH-HCCCcEEEEccCCChHHHH
Q 001155 393 SFRPNQREIINAT-MSGHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 393 ~lrpiQ~eaI~~i-l~g~dvLV~APTGsGKTl~ 424 (1136)
.+.+.+..-+... -.|..++|++|||||||..
T Consensus 244 ~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3566666666544 4688899999999999975
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=57.60 E-value=9 Score=40.01 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHCCCcEEEEccCCChHHHHH
Q 001155 391 NHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 391 ~~~lrpiQ~eaI~~il~g~dvLV~APTGsGKTl~y 425 (1136)
+...+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456678888988888988999999999999754
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=57.59 E-value=21 Score=49.28 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=53.0
Q ss_pred HHHHHHHC------CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHH
Q 001155 400 EIINATMS------GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWT 470 (1136)
Q Consensus 400 eaI~~il~------g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~ 470 (1136)
..++.++. |.-++|.+|+|+|||...+-.+. ..++.++||+---++-+ +. ....|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~--~~-a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IY-ARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCH--HH-HHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHH--HH-HHHcCCCH----------
Confidence 34666664 35589999999999975432221 22456666664333321 11 22233211
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
-+++|..|..+ +.+...+..+.....+++||||.+..+.
T Consensus 436 ---------------~~L~I~~~~~~---e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG---EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH---HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH---HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12445555444 2233333333333468999999999885
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=56.86 E-value=12 Score=37.95 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=15.6
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
+.+++.+|+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 237
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=56.35 E-value=10 Score=41.86 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHHHCCCcEEEEccCCChHHHHHH
Q 001155 403 NATMSGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 403 ~~il~g~dvLV~APTGsGKTl~y~ 426 (1136)
..+..+.++++.+|+|+|||..+.
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 334468899999999999997654
No 238
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=55.99 E-value=19 Score=47.22 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=63.8
Q ss_pred hhCCCcEEEEccChhhHHHHHHHHHHc--CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHH
Q 001155 430 LICPGITLVISPLVSLIQDQIMHLLQA--NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLE 507 (1136)
Q Consensus 430 L~~~g~~LVIsPtraL~~dqv~~L~~~--gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~ 507 (1136)
+..+++++|++|++.-+......|.+. ++++..++|+++..++..++..+.. +..+|||+|. .+. .
T Consensus 809 l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~VLVaT~-v~e------~--- 876 (1151)
T 2eyq_A 809 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTT-IIE------T--- 876 (1151)
T ss_dssp HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCEEEESS-TTG------G---
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEECC-cce------e---
Confidence 345789999999999999888888887 8899999999999988888887765 7899999996 221 1
Q ss_pred hhhhhhccceeeeecccc
Q 001155 508 SLNARELLARIVIDEAHC 525 (1136)
Q Consensus 508 ~l~~~~~l~lVVIDEAH~ 525 (1136)
.+ ....+++||+..++.
T Consensus 877 Gi-Dip~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 877 GI-DIPTANTIIIERADH 893 (1151)
T ss_dssp GS-CCTTEEEEEETTTTS
T ss_pred ee-cccCCcEEEEeCCCC
Confidence 11 123477888766643
No 239
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=55.16 E-value=14 Score=41.56 Aligned_cols=24 Identities=29% Similarity=0.348 Sum_probs=17.9
Q ss_pred cEEEEccCCChHHHHHHhhhhhCC
Q 001155 410 DVFVLMPTGGGKSLTYQLPALICP 433 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~~ 433 (1136)
.++|++|||+|||..+..-+-..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999987654444333
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=54.90 E-value=16 Score=46.06 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=16.1
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
+.+|+.+|.|+|||+.+-.
T Consensus 239 ~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.86 E-value=73 Score=35.09 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=20.9
Q ss_pred CCcEEEEccCCChHHHHH-HhhhhhC--CCcEEEEc
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALIC--PGITLVIS 440 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~~--~g~~LVIs 440 (1136)
+.-+.+++|+|+|||... .|..+.. ++.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 445888999999999653 3333322 45555544
No 242
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=53.59 E-value=28 Score=47.39 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=52.7
Q ss_pred HHHHHHHC------CCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHH
Q 001155 400 EIINATMS------GHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWT 470 (1136)
Q Consensus 400 eaI~~il~------g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~ 470 (1136)
..++.++. |+-++|.+|+|+|||..++-.+ ...++.++||+---++-+ . .....|+..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~--~-~a~~lGvd~---------- 435 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--I-YARKLGVDI---------- 435 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH--H-HHHHTTCCG----------
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH--H-HHHHcCCCH----------
Confidence 45667775 4569999999999997543222 233566777664333321 1 122233321
Q ss_pred HHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccccc
Q 001155 471 EQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHCVS 527 (1136)
Q Consensus 471 ~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ls 527 (1136)
-++++..|..+ +.+...+..+.....+++||||.+..+.
T Consensus 436 ---------------~~L~i~~~~~~---e~~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 436 ---------------DNLLCSQPDTG---EQALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---------------GGCEEECCSSH---HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---------------HHeEEcCCCCH---HHHHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 12334444433 2222333333333458999999999875
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.74 E-value=33 Score=38.52 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=17.8
Q ss_pred CCcEEEEccCCChHHHHHHhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
..++++.+|+|+|||..+..-+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998765443
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=52.71 E-value=7.1 Score=44.12 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=15.5
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
+-++|++|||+|||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 245
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=52.26 E-value=14 Score=39.22 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCChHHHHHHhh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lp 428 (1136)
.+..+++.+|+|+|||..+..-
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHH
Confidence 4678999999999999876443
No 246
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=51.59 E-value=17 Score=42.18 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=44.1
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||++|++.-+......|.+.++++..++|.. +..++..+.. +..+|||+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~----r~~~~~~f~~--g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT----FESEYPKCKS--EKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT----HHHHTTHHHH--SCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc----HHHHHHhhcC--CCCeEEEECc
Confidence 56799999999999999999999999999999872 3334444433 7899999995
No 247
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=51.48 E-value=14 Score=43.04 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHC--CCcEEEEccCCChHHHH
Q 001155 394 FRPNQREIINATMS--GHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 394 lrpiQ~eaI~~il~--g~dvLV~APTGsGKTl~ 424 (1136)
+.+.+..++..++. +.-++|++|||||||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 45566677776664 44588999999999974
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=50.83 E-value=15 Score=40.65 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.8
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
++++++.+|+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 249
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=50.20 E-value=13 Score=45.36 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=47.2
Q ss_pred CCcEEEEccChhhHHHHHHHHHHc------CCCeEEecCC--------CCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQA------NIPATFLSGN--------MEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~------gI~v~~L~g~--------~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||.++++..+......|... |+++..++|+ ++..++..++..+.. +..+|||+|-
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~--g~~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT--GKINLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc--CCCcEEEEcc
Confidence 688999999999999888888876 8999999999 999999988888876 7889999985
No 250
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=50.15 E-value=11 Score=39.58 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.+++.+|+|+|||..+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45699999999999987543
No 251
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=49.18 E-value=12 Score=41.00 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=18.2
Q ss_pred CCcEEEEccCCChHHHHHHhhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL 430 (1136)
++.+++.+|+|+|||..+..-+-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 56799999999999987654433
No 252
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=48.60 E-value=12 Score=42.55 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---hhCCCcEEEEccChhh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---LICPGITLVISPLVSL 445 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L~~~g~~LVIsPtraL 445 (1136)
.+.+++|++|||+|||.....-+ ...++.++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 45689999999999997532221 1235667777676554
No 253
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=48.54 E-value=1.3e+02 Score=37.74 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=49.6
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL 496 (1136)
+.++||.+..+..+.-....|...|+++..+.|+++..++...+...+.......+++++....
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag 635 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG 635 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH
T ss_pred CCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc
Confidence 5689999999998887777888889999999999999999988887765332333555555443
No 254
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.46 E-value=13 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=17.2
Q ss_pred CcEEEEccCCChHHHHHHhhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~LpaL 430 (1136)
+.+|+.+|.|+|||+.+-.-+-
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4699999999999987644433
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.33 E-value=1e+02 Score=34.80 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc-cChhh-HHHHHHHHH-HcCCCe
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS-PLVSL-IQDQIMHLL-QANIPA 460 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs-PtraL-~~dqv~~L~-~~gI~v 460 (1136)
|.-+.+++|+|+|||... .|..+. .++.+++.. ++... +.+|...+. ..++.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 556889999999999753 333332 256666554 33222 334555553 234444
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=48.21 E-value=47 Score=35.20 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=15.9
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
-++++++.|||||..+..-+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999998765433
No 257
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=48.18 E-value=52 Score=35.80 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=20.5
Q ss_pred cEEEEccCCChHHHHHHhhhhhCCCcEEEEcc
Q 001155 410 DVFVLMPTGGGKSLTYQLPALICPGITLVISP 441 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsP 441 (1136)
-+++++|.|+|||..+-.-+-...+..++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 48899999999998654333222233455554
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=48.02 E-value=12 Score=40.27 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.8
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
...+++.+|+|+|||..+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 56799999999999987543
No 259
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=47.45 E-value=23 Score=44.55 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=46.4
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCceEEEeecc-ccccccCCCccEEEE
Q 001155 620 ECGHKAAFYHGSIDPAQRAFVQKQWSKDEINIICATVA-FGMGINKPDVRFVIH 672 (1136)
Q Consensus 620 ~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~VLVAT~a-lg~GIDlP~V~~VIh 672 (1136)
..|+.+..+||+++..+|..+.+.+.+|..+|+|+|.. +...+++.++.+||.
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 45789999999999999999999999999999999975 455678889999883
No 260
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.15 E-value=10 Score=42.46 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.6
Q ss_pred EEEEccCCChHHHHHH
Q 001155 411 VFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~ 426 (1136)
++|++|||+|||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 7889999999997654
No 261
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=47.12 E-value=13 Score=39.37 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.3
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.+++.+|+|+|||..+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 34699999999999987543
No 262
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=46.98 E-value=14 Score=39.90 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.3
Q ss_pred CCcEEEEccCCChHHHHHHhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp 428 (1136)
.+.+++.+|+|+|||..+..-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 567999999999999876443
No 263
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=46.84 E-value=12 Score=43.58 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=41.0
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
++++||++|++.-+......|...++++..++|.. +...+..+.. +..+|||+|.-
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~----R~~~~~~F~~--g~~~vLVaT~v 232 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT----FEREYPTIKQ--KKPDFILATDI 232 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSS----CC----------CCCSEEEESSS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchh----HHHHHhhhcC--CCceEEEECCh
Confidence 56799999999999999999999999999999943 2233333333 78999999953
No 264
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=46.50 E-value=9.4 Score=38.38 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|+-+++++|+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678999999999997643
No 265
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=46.38 E-value=12 Score=44.61 Aligned_cols=31 Identities=39% Similarity=0.456 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCcEEEEccCCChHHHHHHhhh
Q 001155 399 REIINATMSGHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 399 ~eaI~~il~g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
..++.++..+.++++.+|+|+|||..+..-+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHGG
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHHH
Confidence 3344455678899999999999998765433
No 266
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=46.28 E-value=1.1e+02 Score=33.51 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=27.1
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc-cChhh-HHHHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS-PLVSL-IQDQIMHLL 454 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs-PtraL-~~dqv~~L~ 454 (1136)
|.-+.+++|+|+|||... .|..+. .++.+++.. ++... +.+|...+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHH
Confidence 556889999999999753 333332 256666554 33222 234555543
No 267
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=46.27 E-value=10 Score=42.45 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=14.1
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
-++|++|||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999997654
No 268
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=45.54 E-value=11 Score=37.65 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.7
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.+++++++|+|||.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999987653
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.18 E-value=16 Score=36.04 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=17.3
Q ss_pred CCcEEEEccCCChHHHHHHhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.-++++++.|+|||.++-.-+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998765433
No 270
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=45.15 E-value=12 Score=42.58 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHCCCcEEEEccCCChHHHHH
Q 001155 405 TMSGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 405 il~g~dvLV~APTGsGKTl~y 425 (1136)
+..|..++|++|||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 347889999999999999753
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=44.89 E-value=11 Score=38.35 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCChHHHHHHhh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lp 428 (1136)
.++.+++++|+|+|||.++..-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999876443
No 272
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=44.21 E-value=20 Score=39.17 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCCCHHHHHH-HHHHHCCC-----cEEEEccCCChHHHHHHh
Q 001155 392 HSFRPNQREI-INATMSGH-----DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 392 ~~lrpiQ~ea-I~~il~g~-----dvLV~APTGsGKTl~y~L 427 (1136)
....+++... +..++.++ .+++.+|.|+|||+.+..
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 3456777444 56677654 399999999999987653
No 273
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.69 E-value=13 Score=39.87 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.5
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
-++|++|||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3688999999999764
No 274
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=43.50 E-value=14 Score=42.10 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=20.1
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|.-++||+|||.+
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 35566788888 77778999999976
No 275
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=43.47 E-value=15 Score=41.28 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=20.6
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+-
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34566778888 777899999999873
No 276
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=42.62 E-value=56 Score=38.08 Aligned_cols=80 Identities=10% Similarity=0.043 Sum_probs=58.6
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNAR 512 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~ 512 (1136)
++..+||...+.-+......|...+.++..++|+++..++..++..+.. +..+|||+|+..+.. . + ..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~------G---i-Di 414 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN--GKGIIIVASYGVFST------G---I-SV 414 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHH------S---C-CC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhc------c---c-cc
Confidence 5666666666777777777777778899999999998888888877765 788999999877631 1 1 12
Q ss_pred hccceeeeeccc
Q 001155 513 ELLARIVIDEAH 524 (1136)
Q Consensus 513 ~~l~lVVIDEAH 524 (1136)
..+++||+....
T Consensus 415 p~v~~vi~~~~~ 426 (510)
T 2oca_A 415 KNLHHVVLAHGV 426 (510)
T ss_dssp CSEEEEEESSCC
T ss_pred ccCcEEEEeCCC
Confidence 336777776554
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.37 E-value=10 Score=36.77 Aligned_cols=18 Identities=28% Similarity=0.288 Sum_probs=14.8
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
-+++++|+|||||..+..
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 278
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.31 E-value=2.2e+02 Score=26.55 Aligned_cols=127 Identities=17% Similarity=0.274 Sum_probs=79.3
Q ss_pred EEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhcc
Q 001155 436 TLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELL 515 (1136)
Q Consensus 436 ~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l 515 (1136)
-+|.+.--+++.+.++.+...|+++.+++++.....+...+..... -.+-+-|.|--
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek----qgvdvrtvedk------------------- 61 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK----QGVDVRTVEDK------------------- 61 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT----TTCEEEECCSH-------------------
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH----cCCceeeeccH-------------------
Confidence 3556666788899999999999999999999887766655444321 11222222211
Q ss_pred ceeeeeccccccccCCCCccchhhhhhhhccCCCCCEEEEeeccchhhHHHHHHHhcCcceEEecccCCCCchhhhHHHH
Q 001155 516 ARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWMDCEKV 595 (1136)
Q Consensus 516 ~lVVIDEAH~ls~wGhdfR~~y~~L~~l~~~~p~~~iv~LSAT~~~~v~~dI~~~L~l~~~~i~~~s~~r~nl~~~~e~l 595 (1136)
.|||.. ++.+...+|..-++.+-.|-...-..+.
T Consensus 62 ---------------edfren---ireiwerypqldvvvivttddkewikdf---------------------------- 95 (162)
T 2l82_A 62 ---------------EDFREN---IREIWERYPQLDVVVIVTTDDKEWIKDF---------------------------- 95 (162)
T ss_dssp ---------------HHHHHH---HHHHHHHCTTCCEEEEEECCCHHHHHHH----------------------------
T ss_pred ---------------HHHHHH---HHHHHHhCCCCcEEEEEecCcHHHHHHH----------------------------
Confidence 124433 3445666776666655555444322211
Q ss_pred HHHHHhcccccchhhHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCce
Q 001155 596 AERLQVGLSYGHFFLLKEFYVVSLECGHKAAFYHGSIDPAQRAFVQKQWSKDEIN 650 (1136)
Q Consensus 596 ae~L~~~l~~~~~~~~~~~~~~l~~~g~~v~~~Hagm~~~dR~~i~~~F~~g~i~ 650 (1136)
.+..+ +.|..+...+..-....|.+.++.|+++...
T Consensus 96 ieeak-------------------ergvevfvvynnkdddrrkeaqqefrsdgvd 131 (162)
T 2l82_A 96 IEEAK-------------------ERGVEVFVVYNNKDDDRRKEAQQEFRSDGVD 131 (162)
T ss_dssp HHHHH-------------------HTTCEEEEEEECSCHHHHHHHHHHHCCSSCE
T ss_pred HHHHH-------------------hcCcEEEEEecCCCchhHHHHHHHhhhcCce
Confidence 11222 6788888877888888899999999886443
No 279
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=42.30 E-value=17 Score=37.56 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCcEEEEccCCChHHHHHHhhhh---hCCCcEEEEccCh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLV 443 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtr 443 (1136)
|+=.++.+|+|+|||...+--+. ..+.+++++-|.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44478899999999976543332 2366788887774
No 280
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=42.19 E-value=12 Score=40.85 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.4
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
+.+++.+|+|+|||..+..
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999986543
No 281
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.02 E-value=15 Score=42.82 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.6
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
-+.+|+.+|+|+|||+.+-.
T Consensus 215 prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHH
Confidence 35799999999999987543
No 282
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.82 E-value=13 Score=38.24 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
|+-+++++|+|+|||....
T Consensus 8 g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHH
Confidence 5568899999999997653
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=41.65 E-value=29 Score=40.45 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=20.3
Q ss_pred CcEEEEccCCChHHHHHH-hhhhh--CCCcEEEEc
Q 001155 409 HDVFVLMPTGGGKSLTYQ-LPALI--CPGITLVIS 440 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~-LpaL~--~~g~~LVIs 440 (1136)
..+++++++|+|||.... |.... .+.++++|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368899999999996543 22221 244566554
No 284
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=41.54 E-value=17 Score=40.91 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.0
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.+|+.+|+|+|||..+..-+
T Consensus 85 ~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHH
Confidence 569999999999998765433
No 285
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=41.52 E-value=19 Score=39.62 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.2
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
..+++.+|+|+|||..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999987644
No 286
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=41.34 E-value=15 Score=41.66 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=19.4
Q ss_pred HHHHHHCCCc--EEEEccCCChHHHH
Q 001155 401 IINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 401 aI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
++..++.|.| +|..++||+|||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 4556678887 67789999999987
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=41.33 E-value=11 Score=40.64 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|.-+++++|||+|||...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 5667999999999999753
No 288
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=41.10 E-value=1e+02 Score=27.69 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccChHHHHHHhhcCCC---CHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q 001155 952 KLYSSLRMLRTLLVKEAGEGVMAYHIFGNATLQHLSKRVPR---TEEELLEINGIGKAKVSKYGVRLLETIESTIKEFY 1027 (1136)
Q Consensus 952 ~L~~~L~~~R~~~A~~~~~~v~p~~I~~~~~L~~ia~~~P~---t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~e~~ 1027 (1136)
-+.+-|.+|+....+. +..-+.++ .+++..|. ..|. +..|+..++|||+.-.+ .|=+.+.+||+|++
T Consensus 17 lf~~wL~e~~~~a~~r---~~k~~~~Y-~KA~~sLk-~~P~~i~s~~e~~~L~giG~ki~~----~L~e~L~~~c~eng 86 (87)
T 2kp7_A 17 LFVRWLTEWRDEAASR---GRHTRFVF-QKALRSLQ-RYPLPLRSGKEAKILQHFGDRLCR----MLDEKLKQHLASGG 86 (87)
T ss_dssp HHHHHHHHHHHHHHHH---TCTTHHHH-HHHHHHHH-HCCSCCCSHHHHHTCTTTCHHHHH----HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhc---CchHHHHH-HHHHHHHH-hCCCCCCCHHHHHHhhcccHHHHH----HHHHHHHHHHHHcC
Confidence 3456688888854433 43333333 45555554 3453 88999999999976655 45567788888865
No 289
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=40.95 E-value=18 Score=37.13 Aligned_cols=34 Identities=21% Similarity=0.023 Sum_probs=24.3
Q ss_pred EEEEccCCChHHHHHHhhhhhCCCcEEEEccChhh
Q 001155 411 VFVLMPTGGGKSLTYQLPALICPGITLVISPLVSL 445 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL 445 (1136)
++|.+++|||||.-+.--+.. +..++||+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC
Confidence 689999999999766533333 5578888876543
No 290
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=40.89 E-value=17 Score=41.23 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=19.9
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 34556778887 77789999999986
No 291
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=40.80 E-value=17 Score=40.83 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=21.6
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46778889988 777899999999763
No 292
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.79 E-value=16 Score=42.67 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.0
Q ss_pred CCcEEEEccCCChHHHHHHhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp 428 (1136)
-+.+|+.+|+|+|||+.+-.-
T Consensus 215 prGvLL~GPPGtGKTllAkAi 235 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAV 235 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 367999999999999875443
No 293
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=40.78 E-value=17 Score=41.47 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=20.0
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceE
Confidence 34556778888 77789999999987
No 294
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=40.66 E-value=16 Score=41.74 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=19.9
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34556778888 67778999999976
No 295
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=40.52 E-value=17 Score=41.02 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=19.9
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEe
Confidence 34566778888 67779999999976
No 296
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=40.47 E-value=2e+02 Score=31.28 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=26.4
Q ss_pred CCCcEEEEccCCChHHHHH-Hhhhhh--CCCcEEEEc--cChhhHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY-QLPALI--CPGITLVIS--PLVSLIQDQIM 451 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y-~LpaL~--~~g~~LVIs--PtraL~~dqv~ 451 (1136)
.++-+.++++.|+|||... .|..+. .+++++++- +.+..+.+|..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~ 146 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR 146 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH
Confidence 3556778899999999653 333332 356666654 33444444443
No 297
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=40.29 E-value=21 Score=37.14 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=23.4
Q ss_pred CCCcEEEEccCCChHHHHHHhhh---h-hCCCcEEEEcc
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPA---L-ICPGITLVISP 441 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lpa---L-~~~g~~LVIsP 441 (1136)
.|.-+.+.+|+|+|||.....-+ + .....++++.-
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 56779999999999997643322 2 34555566553
No 298
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=40.13 E-value=18 Score=41.34 Aligned_cols=25 Identities=36% Similarity=0.646 Sum_probs=20.3
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 45667788888 77789999999976
No 299
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=39.97 E-value=14 Score=41.35 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=17.1
Q ss_pred HCCCcEEEEccCCChHHHHH
Q 001155 406 MSGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y 425 (1136)
..|+.+++++|||+|||...
T Consensus 169 ~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 36889999999999999753
No 300
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=39.94 E-value=17 Score=41.28 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=20.8
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|.-++||+|||.+-
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45667788988 677789999999873
No 301
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=39.88 E-value=16 Score=41.43 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=19.3
Q ss_pred HHHHHHCCCc--EEEEccCCChHHHH
Q 001155 401 IINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 401 aI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
++..++.|.| +|..++||+|||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 4556778887 77789999999986
No 302
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=39.54 E-value=17 Score=41.11 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=20.5
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 35566788888 777899999999763
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=39.41 E-value=22 Score=34.83 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=17.4
Q ss_pred CCcEEEEccCCChHHHHHHhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+..+++++|.|||||...-+-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5679999999999998754433
No 304
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=39.31 E-value=14 Score=37.76 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=14.9
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667899999999999754
No 305
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=39.28 E-value=17 Score=41.31 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=19.5
Q ss_pred HHHHHHCCCc--EEEEccCCChHHHH
Q 001155 401 IINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 401 aI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
++..++.|.| +|..++||+|||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 4556778888 77779999999986
No 306
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=39.17 E-value=18 Score=41.19 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=20.1
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|.-++||+|||.+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 45666788888 67778999999986
No 307
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.02 E-value=16 Score=41.34 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.4
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
-++|++|||+|||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998654
No 308
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=38.64 E-value=25 Score=43.34 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||++|++.-+......|...++++..++|. ++...+..+.. +..+|||+|-
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~--g~~~VLVaTd 464 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN--GDWDFVITTD 464 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT--CCCSEEEECG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC--CCceEEEECc
Confidence 36789999999999999999999999999999994 34444444443 7889999994
No 309
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=38.54 E-value=58 Score=40.16 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=49.2
Q ss_pred cEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChh
Q 001155 435 ITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 435 ~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPE 494 (1136)
..+|+++++.-+......|.+.++.+..++|++....+...........+..+|||+|--
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi 381 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA 381 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH
Confidence 346678888888888888888899999999999998887777776653367899999963
No 310
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=38.47 E-value=18 Score=41.25 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=20.6
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+-
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 45666788888 677899999999863
No 311
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=38.44 E-value=12 Score=39.15 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=14.8
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 456899999999998653
No 312
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=38.42 E-value=91 Score=36.03 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH---CCCcEEEEccCCChHHHHHH
Q 001155 396 PNQREIINATM---SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 396 piQ~eaI~~il---~g~dvLV~APTGsGKTl~y~ 426 (1136)
..-..+|+..+ .|+.+.|.+|+|+|||....
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34456777765 58899999999999997653
No 313
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=38.24 E-value=14 Score=41.13 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=17.1
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.+++.+|+|+|||..+..-+
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999998765433
No 314
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.23 E-value=20 Score=41.84 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=16.4
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.+|+.+|+|+|||+.+-.
T Consensus 206 prGiLL~GPPGtGKT~lakA 225 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKA 225 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35699999999999987543
No 315
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=38.13 E-value=19 Score=41.44 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=20.2
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeE
Confidence 35566788887 77789999999976
No 316
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=38.01 E-value=20 Score=41.60 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.4
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..+.||+|||.+.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34566778887 777789999999873
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=37.85 E-value=18 Score=35.85 Aligned_cols=21 Identities=14% Similarity=0.059 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.++.++++++.|+|||.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456799999999999987543
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=37.67 E-value=14 Score=37.27 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|.-+++++|+|||||...-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999997643
No 319
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=37.52 E-value=20 Score=35.71 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|.-+++++|.|+|||...-
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678999999999998654
No 320
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=37.50 E-value=84 Score=38.55 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=48.1
Q ss_pred hCCCcEEEEccChhhHHHHHHHHHHcC------------------------------------CCeEEecCCCCHHHHHH
Q 001155 431 ICPGITLVISPLVSLIQDQIMHLLQAN------------------------------------IPATFLSGNMEWTEQQE 474 (1136)
Q Consensus 431 ~~~g~~LVIsPtraL~~dqv~~L~~~g------------------------------------I~v~~L~g~~~~~~~~~ 474 (1136)
..++.+||.+|++.-+......|.... ..+..++|+++..++..
T Consensus 250 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~ 329 (715)
T 2va8_A 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDL 329 (715)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHH
Confidence 456788888998888777776666531 24888999999998888
Q ss_pred HHHHHhcccCcceEEEeChh
Q 001155 475 ILRELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 475 ~l~~l~~~~~~~~ILV~TPE 494 (1136)
+...... +..+|||+|.-
T Consensus 330 v~~~f~~--g~~~vlvaT~~ 347 (715)
T 2va8_A 330 IEEGFRQ--RKIKVIVATPT 347 (715)
T ss_dssp HHHHHHT--TCSCEEEECGG
T ss_pred HHHHHHc--CCCeEEEEChH
Confidence 8877665 78999999953
No 321
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.49 E-value=18 Score=41.86 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=21.8
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 47888899988 677789999999873
No 322
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=37.24 E-value=7.1 Score=45.55 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||++|++.-+......|...++.+..++|+++...+..++..+.. +..+|||+|-
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~--g~~~iLv~T~ 391 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTN 391 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc--CCCcEEEEcc
Confidence 5679999999999998888888889999999999998888877777665 6788999984
No 323
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=37.22 E-value=18 Score=41.31 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=19.7
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|..++||+|||.+
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 34556678887 77789999999976
No 324
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.22 E-value=21 Score=41.17 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=21.5
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+-
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 36778889988 677799999999874
No 325
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=37.21 E-value=17 Score=41.50 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=20.4
Q ss_pred HHHHHHCCCc--EEEEccCCChHHHH
Q 001155 401 IINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 401 aI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
++..++.|.| +|..++||+|||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 6777889988 67778999999976
No 326
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=36.89 E-value=19 Score=39.55 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.5
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
....+++.+|+|+|||.++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 356799999999999987643
No 327
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=36.73 E-value=18 Score=36.51 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.8
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|.-+.+++|+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999764
No 328
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=36.29 E-value=7.5 Score=43.45 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||+++++.-+......|...++.+..++|+++..++...+..+.. +..+|+|+|.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 317 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSRILISTD 317 (394)
T ss_dssp -------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC--CCCcEEEECC
Confidence 4678999999999998888888889999999999988887777776654 6788999885
No 329
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=36.24 E-value=39 Score=43.47 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCCcEEEEccChhhHHHHHHHHHH-cCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQ-ANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKV 496 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~-~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL 496 (1136)
.+.++||+++++.-+......|.. .|+++..++|+++..++...+..+....+.++|||+| ..+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~ 566 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIG 566 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCT
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chh
Confidence 477899999999999888888884 5999999999999998888888887633349999999 444
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=36.20 E-value=1.2e+02 Score=32.06 Aligned_cols=19 Identities=21% Similarity=0.037 Sum_probs=15.4
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
.-++++++.|+|||..+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3588999999999987543
No 331
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=36.17 E-value=18 Score=39.40 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
...+++.+|+|+|||..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999998654
No 332
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=36.03 E-value=26 Score=36.93 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.4
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
+.+++.+|+|+|||.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3499999999999976543
No 333
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=35.95 E-value=22 Score=41.61 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=20.2
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..+.||+|||.+.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34556678888 777899999999763
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=35.84 E-value=19 Score=36.12 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCChHHHHHHhh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~Lp 428 (1136)
.+..++++++.|+|||.+.-.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999876443
No 335
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=35.40 E-value=1e+02 Score=36.55 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=25.0
Q ss_pred CCCcEEEEccCCChHHHHHH-hhhhh--CCCcEEEEccChh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPALI--CPGITLVISPLVS 444 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-LpaL~--~~g~~LVIsPtra 444 (1136)
.|.-++|.+|+|+|||.... +..+. .+.+++++++-..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES 320 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 46679999999999996533 22221 2446778776543
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=34.70 E-value=18 Score=37.49 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|+-+++++|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5667899999999999754
No 337
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=34.64 E-value=21 Score=36.37 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|+-+++++|+|+|||...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4677999999999999754
No 338
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=34.60 E-value=1.2e+02 Score=34.75 Aligned_cols=18 Identities=33% Similarity=0.189 Sum_probs=15.0
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
=++++++.|||||..+..
T Consensus 260 lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488899999999987644
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=34.37 E-value=19 Score=35.00 Aligned_cols=17 Identities=18% Similarity=-0.081 Sum_probs=14.3
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
-++++++.|+|||.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998754
No 340
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=34.35 E-value=20 Score=35.50 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=15.8
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.-++++++.|+|||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568999999999998654
No 341
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=34.34 E-value=22 Score=38.50 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.0
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+++.+|+|+|||..+.
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 69999999999998754
No 342
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=34.34 E-value=17 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=14.6
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
-++++++.|||||..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 378999999999986543
No 343
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=34.28 E-value=18 Score=41.54 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=18.3
Q ss_pred HHHHCCCc--EEEEccCCChHHHHH
Q 001155 403 NATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 403 ~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
..++.|.| +|..++||+|||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 45678887 777899999999763
No 344
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=34.27 E-value=18 Score=40.29 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCCcEEEEccCCChHHHHHH-hhhhhCCCcEEEEcc
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ-LPALICPGITLVISP 441 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~-LpaL~~~g~~LVIsP 441 (1136)
.|+-+.|++|+|+|||.... |.-+. .|.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 47779999999999996543 33344 676654443
No 345
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=33.97 E-value=1.5e+02 Score=34.99 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHHHHH---CCCcEEEEccCCChHHHHH
Q 001155 401 IINATM---SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 401 aI~~il---~g~dvLV~APTGsGKTl~y 425 (1136)
+|..+. .|+.+++.+|.|.|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 566654 6888999999999999653
No 346
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=33.96 E-value=22 Score=35.77 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.0
Q ss_pred CcEEEEccCCChHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y 425 (1136)
+-+.+++|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44788999999999764
No 347
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=33.89 E-value=17 Score=42.01 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=13.0
Q ss_pred EEEEccCCChHHHHH
Q 001155 411 VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 411 vLV~APTGsGKTl~y 425 (1136)
++|++|||+|||..+
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999764
No 348
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=33.82 E-value=20 Score=40.55 Aligned_cols=26 Identities=27% Similarity=0.646 Sum_probs=20.9
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
.++..++.|.| +|..++||+|||.+-
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 36667788888 677799999999874
No 349
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=33.64 E-value=39 Score=39.24 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=43.8
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+.+||++|++.-+......|...|+.+..++|... ...+..+.. +..+|||+|-
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~--g~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKL--TDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGS--SCCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhcc--CCceEEEECC
Confidence 567999999999999999999999999999988654 233444333 7899999995
No 350
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.55 E-value=26 Score=40.81 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.9
Q ss_pred CCcEEEEccCCChHHHHHHhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp 428 (1136)
-+.+|+.+|.|+|||+.+-.-
T Consensus 216 prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHH
Confidence 367999999999999875433
No 351
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=33.51 E-value=29 Score=34.66 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=15.4
Q ss_pred CcEEEEccCCChHHHHHHhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lp 428 (1136)
.-+++++|.|+|||...-+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 34688999999999865443
No 352
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=33.45 E-value=24 Score=37.87 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.5
Q ss_pred HCCCcEEEEccCCChHHHHHHhhh
Q 001155 406 MSGHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+.|+.++++++.|+|||.+..+-+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999998765433
No 353
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=33.17 E-value=29 Score=41.10 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=18.1
Q ss_pred CCcEEEEccCCChHHHHHHhhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPAL 430 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~LpaL 430 (1136)
...+|+.+|+|+|||+++..-+-
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999987654433
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=32.81 E-value=18 Score=41.18 Aligned_cols=18 Identities=44% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCChHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~ 424 (1136)
.|..+++++|||+|||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466799999999999975
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=32.78 E-value=44 Score=33.76 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=23.1
Q ss_pred cEEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecC
Q 001155 410 DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSG 465 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g 465 (1136)
-+.++++.|+|||.. +...+..|...|.++..+..
T Consensus 6 ~i~i~G~sGsGKTTl---------------------~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL---------------------MEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHH---------------------HHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHH---------------------HHHHHHhhHhcCCeeeEEEe
Confidence 367889999999963 33344455566666666553
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=32.60 E-value=24 Score=36.65 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.3
Q ss_pred HCCCcEEEEccCCChHHHHH
Q 001155 406 MSGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y 425 (1136)
..|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778999999999999754
No 357
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=32.18 E-value=32 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.5
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
+.+++.+|+|+|||.....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHH
Confidence 3499999999999976543
No 358
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=32.12 E-value=49 Score=40.31 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=44.9
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||.++++.-+......|.+.++++..++|. .+...+..+.. +..+|||+|.
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~--g~~~VLVaTd 409 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL--TDWDFVVTTD 409 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH--SCCSEEEECG
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC--CCcEEEEECc
Confidence 36789999999999999999999999999999985 23334444443 7899999996
No 359
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=32.05 E-value=19 Score=40.85 Aligned_cols=18 Identities=50% Similarity=0.525 Sum_probs=15.1
Q ss_pred CCCcEEEEccCCChHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~ 424 (1136)
.+.-++|++|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355799999999999975
No 360
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=31.90 E-value=21 Score=40.45 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=20.0
Q ss_pred HHHHHHCCCc--EEEEccCCChHHHHH
Q 001155 401 IINATMSGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 401 aI~~il~g~d--vLV~APTGsGKTl~y 425 (1136)
++..++.|.| +|..++||+|||.+-
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566678888 777899999999874
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=31.76 E-value=25 Score=34.85 Aligned_cols=18 Identities=22% Similarity=0.122 Sum_probs=14.5
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
-.+|++|+|+|||...-.
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 468999999999986533
No 362
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=31.76 E-value=24 Score=35.83 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|+-+++++|.|+|||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999998654
No 363
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=31.41 E-value=11 Score=44.52 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......|.+.++.+..++|++....+...+..+.. +..+|||+|-
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~--g~~~VLVaT~ 415 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV--GTSKVLVTTN 415 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS--SSCCCCEECC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEeCC
Confidence 36789999999999998888898889999999999887777666666654 7889999985
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=31.02 E-value=21 Score=35.03 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.5
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
-.+|++|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3688999999999863
No 365
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=31.00 E-value=22 Score=41.38 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.2
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
++.+|+.+|+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999998754
No 366
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=30.68 E-value=35 Score=36.94 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.1
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
+.+++.+|.|+|||..+-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 449999999999998654
No 367
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=30.36 E-value=21 Score=40.85 Aligned_cols=24 Identities=29% Similarity=0.654 Sum_probs=19.4
Q ss_pred HHHHHHCCCc--EEEEccCCChHHHH
Q 001155 401 IINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 401 aI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
++..++.|.| +|.-++||+|||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5566678887 77779999999976
No 368
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=30.28 E-value=23 Score=34.91 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=16.1
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
|.-+++++|.|+|||..+-+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999986543
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=30.26 E-value=24 Score=36.25 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.8
Q ss_pred CcEEEEccCCChHHHH
Q 001155 409 HDVFVLMPTGGGKSLT 424 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~ 424 (1136)
+-++|++|.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999975
No 370
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=30.23 E-value=53 Score=35.40 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=44.1
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+++||+++++.-+......| -.+..++|+++..++...+..+.. +..+|+|+|.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l----~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 274 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDLPQSVRNRNIDAFRE--GEYDMLITTD 274 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTC----TTEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECH
T ss_pred CCCcEEEEEcCHHHHHHHHHHh----hhhhhhcCCCCHHHHHHHHHHHHc--CCCcEEEEcC
Confidence 3678999999988776444333 368889999999988888888765 6889999985
No 371
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=29.95 E-value=43 Score=28.82 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=17.6
Q ss_pred CCHHHHccCCCCCHHHHHHH
Q 001155 992 RTEEELLEINGIGKAKVSKY 1011 (1136)
Q Consensus 992 ~t~~eL~~I~Gig~~k~~kY 1011 (1136)
.+.+||.+|+|||+.++++.
T Consensus 50 ~s~~eL~~v~Gig~k~~~~i 69 (75)
T 2duy_A 50 ARVEDLLKVKGIGPATLERL 69 (75)
T ss_dssp SSGGGGGGSTTCCHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHH
Confidence 69999999999999888753
No 372
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.92 E-value=37 Score=39.72 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.6
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
.+++++.+|+|+|||..+..
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999987543
No 373
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=29.91 E-value=36 Score=35.85 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=23.2
Q ss_pred cEEEEccCCChHHHHHHhhhh---hCCCcEEEEccChh
Q 001155 410 DVFVLMPTGGGKSLTYQLPAL---ICPGITLVISPLVS 444 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~LpaL---~~~g~~LVIsPtra 444 (1136)
=.++++|.|+|||...+--+. ..+.+++++-|.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 367899999999976543332 33667888877753
No 374
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=29.86 E-value=27 Score=35.67 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHCCCcEEEEccCCChHHHHH
Q 001155 404 ATMSGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 404 ~il~g~dvLV~APTGsGKTl~y 425 (1136)
.+..|+-+.+++|.|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999764
No 375
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=29.59 E-value=20 Score=35.60 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.|.-+.+++|.|||||..+-+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 355588999999999986554
No 376
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=29.59 E-value=89 Score=38.40 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=47.3
Q ss_pred hCCCcEEEEccChhhHHHHHHHHHHc---------------------------------CCCeEEecCCCCHHHHHHHHH
Q 001155 431 ICPGITLVISPLVSLIQDQIMHLLQA---------------------------------NIPATFLSGNMEWTEQQEILR 477 (1136)
Q Consensus 431 ~~~g~~LVIsPtraL~~dqv~~L~~~---------------------------------gI~v~~L~g~~~~~~~~~~l~ 477 (1136)
..++.+||.+|++.-+......|.+. ...+..++|+++..++..+..
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 44677888888888877666666542 124888999999999988887
Q ss_pred HHhcccCcceEEEeChh
Q 001155 478 ELNSDYCKYKLLYVTPE 494 (1136)
Q Consensus 478 ~l~~~~~~~~ILV~TPE 494 (1136)
.... +..+|||+|.-
T Consensus 315 ~f~~--g~~~vlvaT~~ 329 (720)
T 2zj8_A 315 NFRK--GIIKAVVATPT 329 (720)
T ss_dssp HHHT--TSSCEEEECST
T ss_pred HHHC--CCCeEEEECcH
Confidence 7765 78999999953
No 377
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=29.20 E-value=25 Score=35.76 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|.-+.+++|.|+|||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46668899999999998653
No 378
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.19 E-value=29 Score=38.12 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=16.6
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
..++++.+|+|+|||..+..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 45799999999999987643
No 379
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.18 E-value=21 Score=35.42 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
|..++++++.|||||..+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999987544
No 380
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=29.09 E-value=92 Score=38.14 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=47.1
Q ss_pred hCCCcEEEEccChhhHHHHHHHHHHc------------------------------CCCeEEecCCCCHHHHHHHHHHHh
Q 001155 431 ICPGITLVISPLVSLIQDQIMHLLQA------------------------------NIPATFLSGNMEWTEQQEILRELN 480 (1136)
Q Consensus 431 ~~~g~~LVIsPtraL~~dqv~~L~~~------------------------------gI~v~~L~g~~~~~~~~~~l~~l~ 480 (1136)
..++.+||.+|++.-+......|... +..+..++|+++..++..+.....
T Consensus 240 ~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 319 (702)
T 2p6r_A 240 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 319 (702)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHH
Confidence 45678888889888777666655432 235778999999988888877766
Q ss_pred cccCcceEEEeChh
Q 001155 481 SDYCKYKLLYVTPE 494 (1136)
Q Consensus 481 ~~~~~~~ILV~TPE 494 (1136)
. +..+|||+|.-
T Consensus 320 ~--g~~~vlvaT~~ 331 (702)
T 2p6r_A 320 R--GNIKVVVATPT 331 (702)
T ss_dssp T--TSCCEEEECST
T ss_pred C--CCCeEEEECcH
Confidence 5 78999999974
No 381
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=29.06 E-value=26 Score=35.48 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.3
Q ss_pred CcEEEEccCCChHHHHHH
Q 001155 409 HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~ 426 (1136)
.-++++++.|+|||..+.
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999998654
No 382
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=28.75 E-value=29 Score=38.98 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=22.9
Q ss_pred CCCcEEEEccCCChHHHHHHhhhhhCCCcEEEEcc
Q 001155 407 SGHDVFVLMPTGGGKSLTYQLPALICPGITLVISP 441 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~LpaL~~~g~~LVIsP 441 (1136)
.+.-+++.+|+|+|||..++--+...+.+++||.-
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34568999999999997654333334445555554
No 383
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=28.34 E-value=34 Score=33.38 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=17.2
Q ss_pred CcEEEEccCCChHHHHHHhhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lpa 429 (1136)
+++++.++.|||||.+..+-+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999998765443
No 384
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.05 E-value=30 Score=34.08 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.2
Q ss_pred cEEEEccCCChHHHHHHhhh
Q 001155 410 DVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lpa 429 (1136)
.++++++.|+|||.++..-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999998765433
No 385
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=27.98 E-value=38 Score=34.38 Aligned_cols=20 Identities=15% Similarity=-0.049 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
+.-+.|++++|+|||..+.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44578999999999986543
No 386
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=27.96 E-value=23 Score=40.14 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.7
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
-.+|++|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999764
No 387
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=27.96 E-value=16 Score=38.83 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.9
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
.+.+++.+|+|+|||..+.
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998754
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=27.84 E-value=38 Score=34.54 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.9
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
.+++.+|.|+|||.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987544
No 389
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=27.80 E-value=26 Score=34.70 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.5
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.-++++++.|||||..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998754
No 390
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=27.30 E-value=42 Score=40.58 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=21.1
Q ss_pred HHHHCCCcEEEEccCCChHHHHHHhhh
Q 001155 403 NATMSGHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 403 ~~il~g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
..+..|..+++.+|+|+|||..+..-+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 344578899999999999998765433
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=27.21 E-value=35 Score=34.77 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=14.7
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
.+++.+|.|||||.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987543
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=27.07 E-value=30 Score=38.38 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.0
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
..+++.+|+|+|||..+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5799999999999986543
No 393
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=26.94 E-value=1.8e+02 Score=31.27 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=57.4
Q ss_pred cCCChHHHHH--Hhhhh-hCCCcEEEEccChhhHHHHHHHHHHc-CCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEe
Q 001155 416 PTGGGKSLTY--QLPAL-ICPGITLVISPLVSLIQDQIMHLLQA-NIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYV 491 (1136)
Q Consensus 416 PTGsGKTl~y--~LpaL-~~~g~~LVIsPtraL~~dqv~~L~~~-gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~ 491 (1136)
...+||-... +|.-+ ..+.++||.+.++..+......|... |+++..++|+++..++...+...... ....|+++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~-~~~~v~L~ 170 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNN-PSVKFIVL 170 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHC-TTCCEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCC-CCCCEEEE
Confidence 3567887542 22222 24679999999999888777777764 99999999999998888888877652 14566666
Q ss_pred Chhhh
Q 001155 492 TPEKV 496 (1136)
Q Consensus 492 TPEkL 496 (1136)
++...
T Consensus 171 st~~~ 175 (271)
T 1z5z_A 171 SVKAG 175 (271)
T ss_dssp ECCTT
T ss_pred ehhhh
Confidence 65544
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.81 E-value=24 Score=36.63 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=11.8
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.|+-+.+++|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999754
No 395
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=26.77 E-value=24 Score=39.98 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.7
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
=.++++|||+|||...
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999863
No 396
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=26.76 E-value=25 Score=34.95 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.3
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.-++++++.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998654
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=26.20 E-value=31 Score=35.35 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.3
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
..+.+.+|+|||||..+-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=26.12 E-value=42 Score=34.69 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=15.8
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
...+++++++|||||....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998653
No 399
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=26.11 E-value=33 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.+.-++++++.|+|||..+-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998653
No 400
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.05 E-value=34 Score=48.71 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCCCCHHH-HHHH---HHHHCCCcEEEEccCCChHHHHHHhhh
Q 001155 379 KKLEANNKKVFGNHSFRPNQ-REII---NATMSGHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ-~eaI---~~il~g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
..+.+.+.+. |+. +.+.+ .+++ ..+.....+++++|||+|||.++.+-+
T Consensus 892 ~~i~~~~~~~-~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 892 QCLKDAGQRS-GFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHH-TCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 3444444444 664 34443 3333 334456779999999999999976443
No 401
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=26.00 E-value=40 Score=37.85 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=23.9
Q ss_pred CCcEEEEccCCChHHHHH-Hhhhhh--C------CCcEEEEccC
Q 001155 408 GHDVFVLMPTGGGKSLTY-QLPALI--C------PGITLVISPL 442 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y-~LpaL~--~------~g~~LVIsPt 442 (1136)
|.-+.|++|.|+|||... ++.... . ++.+|+|.-.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 556899999999999654 344333 1 2577887653
No 402
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=25.78 E-value=5.5e+02 Score=26.21 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=76.4
Q ss_pred hCCCCCCHHHHHHHHHHHC--CCc---EEEEccCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCC---e
Q 001155 389 FGNHSFRPNQREIINATMS--GHD---VFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIP---A 460 (1136)
Q Consensus 389 fG~~~lrpiQ~eaI~~il~--g~d---vLV~APTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~---v 460 (1136)
.|+....|.+.+.+..+.. +.. -++-..||+|-+..++...+-..+.++-|=.....+..-.+.+...|+. +
T Consensus 32 ~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i 111 (221)
T 3dr5_A 32 FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV 111 (221)
T ss_dssp TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE
T ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE
Confidence 4888899999999887753 322 6678889999988877666544566666666666555444555666664 7
Q ss_pred EEecCCCCHHHHHHHHHHHhcccCcceEEEeChhhhhchHHHHHHHHhhhhhhccceeeeecccc
Q 001155 461 TFLSGNMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLNARELLARIVIDEAHC 525 (1136)
Q Consensus 461 ~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TPEkL~~~d~l~r~l~~l~~~~~l~lVVIDEAH~ 525 (1136)
.++.|+... .+..+. .+.+++|++...+-....++......+ ..=++||+|++..
T Consensus 112 ~~~~gda~~-----~l~~~~--~~~fD~V~~d~~~~~~~~~l~~~~~~L---kpGG~lv~dn~~~ 166 (221)
T 3dr5_A 112 RFLLSRPLD-----VMSRLA--NDSYQLVFGQVSPMDLKALVDAAWPLL---RRGGALVLADALL 166 (221)
T ss_dssp EEECSCHHH-----HGGGSC--TTCEEEEEECCCTTTHHHHHHHHHHHE---EEEEEEEETTTTG
T ss_pred EEEEcCHHH-----HHHHhc--CCCcCeEEEcCcHHHHHHHHHHHHHHc---CCCcEEEEeCCCC
Confidence 777775311 111110 257899998764321112222222222 2236789988764
No 403
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=25.52 E-value=78 Score=27.33 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=27.1
Q ss_pred HHHHHhhcCCCCHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001155 982 TLQHLSKRVPRTEEELLEINGIGKAKVSKYGVRLLETIESTIK 1024 (1136)
Q Consensus 982 ~L~~ia~~~P~t~~eL~~I~Gig~~k~~kYG~~iL~~i~~~~~ 1024 (1136)
++.++|-. +.++|..|+||++.++++ |.+.-++++.
T Consensus 29 tve~vA~~---~~~eL~~I~G~dE~~a~~----l~~~A~~~l~ 64 (70)
T 1u9l_A 29 TLEELAYV---PMKELLEIEGLDEPTVEA----LRERAKNALA 64 (70)
T ss_dssp CHHHHHHS---CHHHHTTSTTCCHHHHHH----HHHHHHHHHH
T ss_pred cHHHHHcC---CHHHHhhccCCCHHHHHH----HHHHHHHHHH
Confidence 56777765 899999999999999985 4444444443
No 404
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.50 E-value=41 Score=39.39 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.2
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..++|+.+|+|+|||..+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998754
No 405
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=25.40 E-value=42 Score=42.08 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCCcEEEEccChhhHHHHHHHHHH-----------cCCCeEEecCCCCHHHHHHHHHHHhc---ccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQ-----------ANIPATFLSGNMEWTEQQEILRELNS---DYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~-----------~gI~v~~L~g~~~~~~~~~~l~~l~~---~~~~~~ILV~TP 493 (1136)
..+.+||.+|++.-+......|.. .++.+..++|+++..++..++..... ..+..+|||+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 368899999999998887777764 47889999999998888776655430 026889999995
No 406
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=25.39 E-value=35 Score=33.99 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.-++++++.|||||.+.-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456799999999999986543
No 407
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=25.20 E-value=39 Score=33.46 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.7
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
..++++++.|||||.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3589999999999987644
No 408
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.91 E-value=36 Score=33.20 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.0
Q ss_pred CcEEEEccCCChHHHHHHhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lp 428 (1136)
+.+++.++.|||||.++..-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999876443
No 409
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=24.91 E-value=42 Score=39.55 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.0
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
+.+++.+|+|+|||+.+..
T Consensus 50 ~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987643
No 410
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.85 E-value=44 Score=39.95 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.5
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.+..+++.+|+|+|||..+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 367899999999999987543
No 411
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.72 E-value=34 Score=33.82 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=14.9
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
-++++++.|||||.+...
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 412
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=24.69 E-value=54 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.1
Q ss_pred HHHhhcCC-CCHHHHccCCCCCHHHHHH
Q 001155 984 QHLSKRVP-RTEEELLEINGIGKAKVSK 1010 (1136)
Q Consensus 984 ~~ia~~~P-~t~~eL~~I~Gig~~k~~k 1010 (1136)
+.|....| .+.++|.+|+|||+.++++
T Consensus 40 ~~IV~~GpF~s~edL~~V~Gig~~~~e~ 67 (97)
T 3arc_U 40 KLIVKNAPYESVEDVLNIPGLTERQKQI 67 (97)
T ss_dssp HHHHHHCCCSSGGGGGGCTTCCHHHHHH
T ss_pred HHHHHcCCCCCHHHHHhccCCCHHHHHH
Confidence 34444667 7999999999999988764
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=24.65 E-value=67 Score=32.38 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=12.7
Q ss_pred cEEEEccCCChHHHH
Q 001155 410 DVFVLMPTGGGKSLT 424 (1136)
Q Consensus 410 dvLV~APTGsGKTl~ 424 (1136)
-++++++.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999963
No 414
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=24.59 E-value=27 Score=42.35 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.2
Q ss_pred cEEEEccCCChHHHHHHhh
Q 001155 410 DVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~Lp 428 (1136)
++|+.+|+|+|||..+..-
T Consensus 329 ~vLL~GppGtGKT~LAr~l 347 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFI 347 (595)
T ss_dssp CEEEEESSCCTHHHHHHSS
T ss_pred ceEEECCCchHHHHHHHHH
Confidence 8999999999999875443
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.55 E-value=56 Score=46.58 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=19.7
Q ss_pred HHHHHH-CCCcEEEEccCCChHHHHH
Q 001155 401 IINATM-SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 401 aI~~il-~g~dvLV~APTGsGKTl~y 425 (1136)
.+..++ .++.+|+++|||+|||..+
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 344444 5889999999999999865
No 416
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=24.21 E-value=1.1e+02 Score=34.05 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=13.7
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+++++++|+|||...
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999754
No 417
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=24.20 E-value=53 Score=40.43 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=44.3
Q ss_pred CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 432 CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 432 ~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
..+.+||+++++.-+....+.|.+.++++..++|++...+.. .++.+|||+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~---------~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIP---------TIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSC---------SSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH---------hCCCcEEEECC
Confidence 467899999999999999999999999999999998765421 24569999985
No 418
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=24.18 E-value=35 Score=33.74 Aligned_cols=17 Identities=29% Similarity=0.077 Sum_probs=14.1
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
-++++++.|+|||....
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997653
No 419
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=24.11 E-value=30 Score=36.38 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHHHCC----CcEEEEccCCChHHHHHH
Q 001155 399 REIINATMSG----HDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 399 ~eaI~~il~g----~dvLV~APTGsGKTl~y~ 426 (1136)
...+..++.+ +.+++.+|.|+|||..+.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3344455543 259999999999997653
No 420
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=24.04 E-value=43 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.9
Q ss_pred CCcEEEEccCCChHHHHHHhhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLPA 429 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lpa 429 (1136)
++.+++++|+|+|||..+..-+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 5679999999999998765443
No 421
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=23.95 E-value=2.6e+02 Score=29.83 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=57.3
Q ss_pred HCCCcEEEEc-cCCChHHHHHHhhhhhCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHH-HHHHHHhccc
Q 001155 406 MSGHDVFVLM-PTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQ-EILRELNSDY 483 (1136)
Q Consensus 406 l~g~dvLV~A-PTGsGKTl~y~LpaL~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~-~~l~~l~~~~ 483 (1136)
|+||-+||.+ ..|-|+..+-.+. ..+..++++.-..+-+++..+++...|.++..+..+....+.. ..+.......
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la--~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFA--LNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH--HcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5688888864 3456666654432 3455666666666667778888888898888888887655443 3344444445
Q ss_pred CcceEEEeChh
Q 001155 484 CKYKLLYVTPE 494 (1136)
Q Consensus 484 ~~~~ILV~TPE 494 (1136)
+..+|+|-.-+
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 78888886654
No 422
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=23.64 E-value=41 Score=35.22 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.3
Q ss_pred HCCCcEEEEccCCChHHHHH
Q 001155 406 MSGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y 425 (1136)
-.|+-++|++|.|+|||...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 45777999999999999754
No 423
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=23.58 E-value=30 Score=40.31 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=42.4
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEeCh
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYVTP 493 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~TP 493 (1136)
.+++||.+|++.-+......|...++++..++|... ...+..+. .+..+|||+|-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R----~~~~~~f~--~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSY----DTEYPKCK--NGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCC----CCCGGGSS--SCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHH----HHHHhhcc--CCCceEEEECC
Confidence 567999999999999999999999999999998522 22222222 26889999994
No 424
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.49 E-value=59 Score=35.86 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.6
Q ss_pred EEEEccCCChHHHHHHh
Q 001155 411 VFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~L 427 (1136)
+++.+|.|+|||..+..
T Consensus 49 ~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999976543
No 425
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.25 E-value=42 Score=34.52 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
...+++++|.|+|||....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998653
No 426
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=23.22 E-value=1.3e+02 Score=29.84 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=8.9
Q ss_pred ccCCChHHHHHH
Q 001155 415 MPTGGGKSLTYQ 426 (1136)
Q Consensus 415 APTGsGKTl~y~ 426 (1136)
...|.|||.+..
T Consensus 9 ~kgG~GKTt~a~ 20 (206)
T 4dzz_A 9 PKGGSGKTTAVI 20 (206)
T ss_dssp SSTTSSHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 467899997653
No 427
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.20 E-value=43 Score=34.40 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.7
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+..+++.++.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 428
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=23.17 E-value=47 Score=37.71 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=17.9
Q ss_pred HHHHH-CCCc--EEEEccCCChHHHHH
Q 001155 402 INATM-SGHD--VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 402 I~~il-~g~d--vLV~APTGsGKTl~y 425 (1136)
+..++ .|.+ +|..++||+|||.+.
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 33444 4777 688899999999864
No 429
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=23.08 E-value=53 Score=33.00 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.0
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
-++++++.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 430
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=23.00 E-value=2e+02 Score=34.99 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=57.7
Q ss_pred cCCChHHHH--HHhhhhh--CCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHHHHHHHHHhcccCcceEEEe
Q 001155 416 PTGGGKSLT--YQLPALI--CPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQQEILRELNSDYCKYKLLYV 491 (1136)
Q Consensus 416 PTGsGKTl~--y~LpaL~--~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~ 491 (1136)
+.-+||-.+ .++..+. .+.++||++..+..+......|...|+.+..+.|+++..++...+...+.......++++
T Consensus 395 ~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 395 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred cccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 445888654 3444443 367999999999988777777778899999999999999998888887763222224555
Q ss_pred Chhhh
Q 001155 492 TPEKV 496 (1136)
Q Consensus 492 TPEkL 496 (1136)
+....
T Consensus 475 st~a~ 479 (644)
T 1z3i_X 475 SSKAG 479 (644)
T ss_dssp EGGGS
T ss_pred ecccc
Confidence 44443
No 431
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=22.96 E-value=44 Score=33.50 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.9
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.-++++++.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5568999999999998654
No 432
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=22.76 E-value=46 Score=41.20 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=20.9
Q ss_pred HHHHHHHCCCc--EEEEccCCChHHHH
Q 001155 400 EIINATMSGHD--VFVLMPTGGGKSLT 424 (1136)
Q Consensus 400 eaI~~il~g~d--vLV~APTGsGKTl~ 424 (1136)
.++..++.|.| +|.-+.||+|||.+
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhc
Confidence 46788899988 66678999999976
No 433
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=22.57 E-value=41 Score=33.94 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.6
Q ss_pred CcEEEEccCCChHHHHHHh
Q 001155 409 HDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~L 427 (1136)
.-++++++.|+|||..+..
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999987543
No 434
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=22.53 E-value=36 Score=34.79 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.4
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
|.-+.|++|+|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445788999999999654
No 435
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=22.44 E-value=40 Score=40.18 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCChHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y 425 (1136)
.+.+++|.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 3678999999999999864
No 436
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=22.38 E-value=2.5e+02 Score=29.90 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=54.6
Q ss_pred HCCCcEEEEccCCChHHHHHHhhh-h-hCCCcEEEEccChhhHHHHHHHHHHcCCCeEEecCCCCHHHH-HHHHHHHhcc
Q 001155 406 MSGHDVFVLMPTGGGKSLTYQLPA-L-ICPGITLVISPLVSLIQDQIMHLLQANIPATFLSGNMEWTEQ-QEILRELNSD 482 (1136)
Q Consensus 406 l~g~dvLV~APTGsGKTl~y~Lpa-L-~~~g~~LVIsPtraL~~dqv~~L~~~gI~v~~L~g~~~~~~~-~~~l~~l~~~ 482 (1136)
|+||-+|| ||+++-+-..+.. + ..+..+++..-..+-+.+.++.+.+.|.++..+..+...... ...+......
T Consensus 7 L~gKvalV---TGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALV---TGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEE---TTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEE---eCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 35777777 5555444333222 2 234455555555566777788888888888888888765444 3444555555
Q ss_pred cCcceEEEeChhh
Q 001155 483 YCKYKLLYVTPEK 495 (1136)
Q Consensus 483 ~~~~~ILV~TPEk 495 (1136)
.+..+|+|-.-+.
T Consensus 84 ~G~iDiLVNNAG~ 96 (255)
T 4g81_D 84 GIHVDILINNAGI 96 (255)
T ss_dssp TCCCCEEEECCCC
T ss_pred CCCCcEEEECCCC
Confidence 6788888876553
No 437
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=22.38 E-value=56 Score=38.75 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.2
Q ss_pred CcEEEEccCCChHHHHHHhh
Q 001155 409 HDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 409 ~dvLV~APTGsGKTl~y~Lp 428 (1136)
+.+++.+|+|+|||+.+..-
T Consensus 65 ~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35999999999999876443
No 438
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.37 E-value=37 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.9
Q ss_pred CCCcEEEEccCCChHHHHHH
Q 001155 407 SGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~ 426 (1136)
.|.-+++.++.|+|||.+.-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999998643
No 439
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=22.26 E-value=35 Score=34.63 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=14.9
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.-+.|.+|+|||||...-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4447789999999997653
No 440
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=22.20 E-value=83 Score=34.13 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHhcchhh
Q 001155 848 LAKSEASRILRHLVIEDFLME 868 (1136)
Q Consensus 848 ~s~~~~~~li~~l~~~g~L~e 868 (1136)
++...+...+..|+..|+|..
T Consensus 320 ~~~~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 320 ISDSEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEe
Confidence 566778889999999998865
No 441
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=22.13 E-value=42 Score=33.50 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.9
Q ss_pred cEEEEccCCChHHHHHH
Q 001155 410 DVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~ 426 (1136)
.+++.++.|+|||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37899999999998643
No 442
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=22.09 E-value=42 Score=34.29 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHCCCcEEEEccCCChHHHHHH
Q 001155 395 RPNQREIINATMSGHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 395 rpiQ~eaI~~il~g~dvLV~APTGsGKTl~y~ 426 (1136)
.+.++... .+..|.-++++++.|+|||..+-
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 45555542 23456678999999999997643
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=21.95 E-value=37 Score=34.94 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.6
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
-.+|++|+|+|||.+.
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999864
No 444
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.87 E-value=47 Score=34.59 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCcEEEEccCCChHHHHHHh
Q 001155 408 GHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~L 427 (1136)
+..+++.++.|+|||..+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45799999999999986543
No 445
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=21.80 E-value=45 Score=35.36 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCChHHHHHHh
Q 001155 407 SGHDVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 407 ~g~dvLV~APTGsGKTl~y~L 427 (1136)
.+.-+.|.+|.|||||.+.-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356688999999999987543
No 446
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=21.68 E-value=41 Score=33.87 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=14.6
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
.+.|+++.|||||...-+
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999987543
No 447
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.65 E-value=76 Score=39.29 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.5
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
.+++.+|||+|||.++..
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 599999999999987643
No 448
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.61 E-value=42 Score=32.55 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.8
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
.+++.++.|||||.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 449
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=21.46 E-value=36 Score=37.89 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.1
Q ss_pred EEEEccCCChHHHHH
Q 001155 411 VFVLMPTGGGKSLTY 425 (1136)
Q Consensus 411 vLV~APTGsGKTl~y 425 (1136)
.++++|+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 450
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.41 E-value=42 Score=33.57 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=14.7
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
-+.|.+++|||||.+..+
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999987543
No 451
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.38 E-value=43 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.6
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
+.-++++++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998654
No 452
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=21.36 E-value=54 Score=32.15 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=12.9
Q ss_pred CCcEEEEccCCChHHHHHHhh
Q 001155 408 GHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~Lp 428 (1136)
+.-++++++.|||||..+..-
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999876543
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=21.20 E-value=45 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=14.3
Q ss_pred cEEEEccCCChHHHHHHh
Q 001155 410 DVFVLMPTGGGKSLTYQL 427 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y~L 427 (1136)
-+.+.+|.|||||.+.-+
T Consensus 4 ~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999986543
No 454
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.11 E-value=58 Score=40.44 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.4
Q ss_pred CCcEEEEccCCChHHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y~ 426 (1136)
..++|+.+|+|+|||.++.
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.03 E-value=46 Score=34.52 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.3
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+++.+|+||||+..+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999754
No 456
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=20.97 E-value=47 Score=33.48 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.5
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
.+.+.+|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999754
No 457
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=20.72 E-value=67 Score=27.10 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.4
Q ss_pred CHHHHccCCCCCHHHHHHH
Q 001155 993 TEEELLEINGIGKAKVSKY 1011 (1136)
Q Consensus 993 t~~eL~~I~Gig~~k~~kY 1011 (1136)
+.++|..|+|||+.++.+.
T Consensus 44 ~~~~L~~i~Gig~~~a~~i 62 (75)
T 1x2i_A 44 SVAELMKVEGIGEKIAKEI 62 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHH
Confidence 6899999999999987743
No 458
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.27 E-value=48 Score=34.78 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.1
Q ss_pred CCcEEEEccCCChHHHHH
Q 001155 408 GHDVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 408 g~dvLV~APTGsGKTl~y 425 (1136)
+.-+++++|.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999753
No 459
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=20.15 E-value=64 Score=32.72 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=13.6
Q ss_pred cEEEEccCCChHHHHH
Q 001155 410 DVFVLMPTGGGKSLTY 425 (1136)
Q Consensus 410 dvLV~APTGsGKTl~y 425 (1136)
-+.+.++.|+|||...
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999764
No 460
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=20.13 E-value=1.1e+02 Score=34.34 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=42.0
Q ss_pred CCcEEEEccChhhHHHHHHHHHHcCCCeE-EecCCCCHHHHHHHHHHHhcccCcceEEEeC
Q 001155 433 PGITLVISPLVSLIQDQIMHLLQANIPAT-FLSGNMEWTEQQEILRELNSDYCKYKLLYVT 492 (1136)
Q Consensus 433 ~g~~LVIsPtraL~~dqv~~L~~~gI~v~-~L~g~~~~~~~~~~l~~l~~~~~~~~ILV~T 492 (1136)
++++||.++++.-+......|...|+++. .++|. . .. +..+.. +..+|||+|
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~-r~-~~~f~~--g~~~vLvat 304 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----E-KN-FEDFKV--GKINILIGV 304 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----H-HH-HHHHHT--TSCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----c-hH-HHHHhC--CCCeEEEEe
Confidence 57899999999999999999999999998 77774 2 22 555544 789999995
No 461
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.11 E-value=53 Score=47.42 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCCCHHH-HHHHH---HHHCCCcEEEEccCCChHHHHHHhh
Q 001155 379 KKLEANNKKVFGNHSFRPNQ-REIIN---ATMSGHDVFVLMPTGGGKSLTYQLP 428 (1136)
Q Consensus 379 ~~l~~~lk~~fG~~~lrpiQ-~eaI~---~il~g~dvLV~APTGsGKTl~y~Lp 428 (1136)
..+.+.+.+. |+. +.+.+ .+++. .+....-+++++|||+|||.|+-.-
T Consensus 875 ~ai~~~~~~~-~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 875 KKIQEIAKQR-HLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp HHHHHHHHHT-TCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHc-CCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 3344444443 664 34433 34433 2233556999999999999998533
No 462
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=20.08 E-value=46 Score=32.86 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.5
Q ss_pred EEEEccCCChHHHHHH
Q 001155 411 VFVLMPTGGGKSLTYQ 426 (1136)
Q Consensus 411 vLV~APTGsGKTl~y~ 426 (1136)
+++.++.|||||....
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998653
Done!