BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001156
(1135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 75/314 (23%)
Query: 861 SSLKPLHWSKIDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESV-LDVDQVENLIKFCPT 919
S LK S ID RRA N I+L+++K+ ++ A+L MDE L D +E L+KF P
Sbjct: 85 SKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPE 144
Query: 920 KEEMELLKNYTGDKENLGK---------------------------CEQISEFRKNLNTV 952
K +++LL+ + + + + K E+++E + + +
Sbjct: 145 KSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAI 204
Query: 953 NSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSK-MTL 1011
S EEV S LK++++ +L GN +N+G RG+A GFK+ SL K+ DT++S K +TL
Sbjct: 205 RSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITL 263
Query: 1012 MHYL------------------------CKIQLKSLAEEMQAIIKGLE------------ 1035
+HYL K+ + L +E+ + GL+
Sbjct: 264 LHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQ 323
Query: 1036 ---------KTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATL 1086
+ FI+VA + V +L + A +FGE+ + ++
Sbjct: 324 PPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIF 383
Query: 1087 LNFVRLFRKAHEEN 1100
F++ +A +EN
Sbjct: 384 DQFLQAVSEAKQEN 397
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 75/314 (23%)
Query: 861 SSLKPLHWSKIDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESV-LDVDQVENLIKFCPT 919
S LK S ID RRA N I+L+++K+ ++ A+L MDE L D +E L+KF P
Sbjct: 83 SKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPE 142
Query: 920 KEEMELLKNYTGDKENLGK---------------------------CEQISEFRKNLNTV 952
K +++LL+ + + + + K E+++E + + +
Sbjct: 143 KSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAI 202
Query: 953 NSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSK-MTL 1011
S EEV S LK++++ +L GN +N+G RG+A GFK+ SL K+ DT++S K +TL
Sbjct: 203 RSGSEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITL 261
Query: 1012 MHYL------------------------CKIQLKSLAEEMQAIIKGLE------------ 1035
+HYL K+ + L +E+ + GL+
Sbjct: 262 LHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQ 321
Query: 1036 ---------KTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATL 1086
+ FI+VA + V +L + A +FGE+ + ++
Sbjct: 322 PPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIF 381
Query: 1087 LNFVRLFRKAHEEN 1100
F++ +A +EN
Sbjct: 382 DQFLQAVSEAKQEN 395
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 66/295 (22%)
Query: 871 IDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYT 930
++ RA N I L K ++ A+ D L VD VE L++F PT+ E++LL+ Y
Sbjct: 87 LEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYE 146
Query: 931 GDKENL-------------GKCEQISE----------FRKNL-------NTVNSACEEVR 960
+++ L K E++++ F+ NL N + +A V+
Sbjct: 147 RERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVK 206
Query: 961 NSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYL----- 1015
+S KLK++++ IL LGN +N + RG+ GFKL SL L DT++++ KMTL+H++
Sbjct: 207 SSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVK 265
Query: 1016 -------------------CKIQLKSLAEEMQAIIKGLE-----------KTLKGFISVA 1045
+ L+++ +++ + +G+E L+ F+S
Sbjct: 266 EKYPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIHDNSVLRNFLSTN 325
Query: 1046 EVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEEN 1100
E ++ + A +A+ YFGE P P + F+R +++A +EN
Sbjct: 326 EGKLDKLQRDAKTAEEAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQEN 380
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 71/305 (23%)
Query: 872 DLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTG 931
D + A N I L +MP ++ +L ++E+VL ++NLIK P E++++L
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 932 DKENLGKCEQ-------ISEFRKNLN--------------------TVNSACEEVRNSIK 964
+ ++L + EQ + R LN +V +ACEE+R S
Sbjct: 163 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 965 LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKI------ 1018
+++ L +GN +N G+ A GF + L KL DT++++ KMTL+H+L ++
Sbjct: 223 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 282
Query: 1019 ---------------------QLKSLAEEMQAIIKGLEKTLKGFISVAEVE---VASVTN 1054
L+ ++M+ I +E+ ++ F + + + V +T+
Sbjct: 283 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTS 342
Query: 1055 LYSVAGRNADALAL--------------YFGEDPARCPFEQVTATLLNFVRLFRKAHEEN 1100
A + L + YF DP + E+ L NF +F +A +EN
Sbjct: 343 FVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKEN 402
Query: 1101 VKQSE 1105
K+ E
Sbjct: 403 QKRRE 407
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 71/305 (23%)
Query: 872 DLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTG 931
D + A N I L +MP ++ +L ++E+VL ++NLIK P E++++L
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 932 DKENLGKCEQ-------ISEFRKNLN--------------------TVNSACEEVRNSIK 964
+ ++L + EQ + R LN +V +ACEE+R S
Sbjct: 144 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 965 LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKI------ 1018
+++ L +GN +N G+ A GF + L KL DT++++ KMTL+H+L ++
Sbjct: 204 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 263
Query: 1019 ---------------------QLKSLAEEMQAIIKGLEKTLKGFISVAEVE---VASVTN 1054
L+ ++M+ I +E+ ++ F + + + V +T+
Sbjct: 264 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTS 323
Query: 1055 LYSVAGRNADALAL--------------YFGEDPARCPFEQVTATLLNFVRLFRKAHEEN 1100
A + L + YF DP + E+ L NF +F +A +EN
Sbjct: 324 FVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKEN 383
Query: 1101 VKQSE 1105
K+ E
Sbjct: 384 QKRRE 388
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 71/305 (23%)
Query: 872 DLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTG 931
D + A N I L +MP ++ +L ++E+VL ++NLIK P E++++L
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 932 DKENLGKCEQ-------ISEFRKNLN--------------------TVNSACEEVRNSIK 964
+ ++L + EQ + R LN +V +ACEE+R S
Sbjct: 73 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 965 LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKI------ 1018
+++ L +GN +N G+ A GF + L KL DT++++ KMTL+H+L ++
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 192
Query: 1019 ---------------------QLKSLAEEMQAIIKGLEKTLKGFISVAEVE---VASVTN 1054
L+ ++M+ I +E+ ++ F + + + V +T+
Sbjct: 193 EVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTS 252
Query: 1055 LYSVAGRNADALAL--------------YFGEDPARCPFEQVTATLLNFVRLFRKAHEEN 1100
A + L + YF DP + E+ L NF +F +A +EN
Sbjct: 253 FVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKEN 312
Query: 1101 VKQSE 1105
K+ E
Sbjct: 313 QKRRE 317
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 108 RSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPREX 167
R+ +WL L+ +NV ++HC G + ++ + ++ Y+ + ++Y + P
Sbjct: 104 RNMYNWL-LQNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRP--- 158
Query: 168 XXXXXXXXXXXXXXRYLQYISRRNLGSDWPPSDTPLLLNCLILRVLPIYGG--NGCRPVI 225
RYL Y+ + P PL + + + +P + NGCRP
Sbjct: 159 -----GIGLSPSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYC 213
Query: 226 RVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVHLED 285
V ++KI + F+ + +QD + + I VQGDVV+ HL
Sbjct: 214 DVLIGETKIYTTCAD--------FERMKEYRVQDGKIFIPLSI--TVQGDVVVSMYHLRS 263
Query: 286 DL-------VREEMMFRVMFHTAFV 303
+ V +F++ FHT F+
Sbjct: 264 TIGSRLQAKVTNTQIFQLQFHTGFI 288
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 37/232 (15%)
Query: 79 SQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFM 138
++++ V YP E + P LE+I F + WLS E +V +HC + G M
Sbjct: 73 AKFNCRVAQYPFEDHNPP--QLELIKPFCEDLDQWLS-EDDNHVAAIHC-KAGKGRTGVM 128
Query: 139 LAGLLLYRKQYTGELKTLEMVYKQAPREXXXXXXXXXXXXXXXRYLQYISRRNLGSDWPP 198
+ LL+R ++ + L+ + R+ Y Y+ + +L D+ P
Sbjct: 129 ICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVY--YYSYLLKNHL--DYRP 184
Query: 199 SDTPLLLNCLILRVLPIYGGNGCRPV-------IRVYGQDSKIPANRSSKLLFSTFKFKT 251
LL + ++ +P++ G C P +++Y +S P R K ++ F+F
Sbjct: 185 --VALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSG-PTRREDKFMY--FEFPQ 239
Query: 252 NVRHYLQDECALVKIDIYCRVQGDVVIECVHLEDDLVREEMMFRVMFHTAFV 303
+ V GD+ +E H ++ +++++ MF +T F+
Sbjct: 240 PLP-----------------VCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFI 274
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 941 QISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLT 1000
+ +E L V+ A ++ S L+ + IL +GN +N + + A GFKL +L +LT
Sbjct: 215 EYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLT 272
Query: 1001 DTRASNSKMTLMHYLCKI 1018
+ + + MT ++Y+ KI
Sbjct: 273 FIKDTTNSMTFLNYVEKI 290
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 941 QISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLT 1000
+ +E L V+ A ++ S L+ + IL +GN +N + + A GFKL +L +LT
Sbjct: 192 EYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLT 249
Query: 1001 DTRASNSKMTLMHYLCKI 1018
+ + + MT ++Y+ KI
Sbjct: 250 FIKDTTNSMTFLNYVEKI 267
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 941 QISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLT 1000
+ +E L V+ A ++ S L+ + IL +GN +N + + A GFKL +L +LT
Sbjct: 186 EYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLT 243
Query: 1001 DTRASNSKMTLMHYLCKI 1018
+ + + MT ++Y+ KI
Sbjct: 244 FIKDTTNSMTFLNYVEKI 261
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 429 VKDITVDDGDIKLDPMVIVANVL----RNIETKELTGHVCDKLEVIEDK 473
+K IT+ G I+ P IVANV+ RN T +LTG+V D +E + DK
Sbjct: 5 LKGITLRIGVIESVPFTIVANVIDTSGRN--TTKLTGYVLDLIEYLRDK 51
>pdb|4AQ1|A Chain A, Structure Of The Sbsb S-Layer Protein Of Geobacillus
Stearothermophilus Pv72p2 In Complex With Nanobody Kb6
Length = 892
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 618 TLISPGSVVSKDITTEKIYRKVESVKPINHSQVPGSSPTPLSPSIVQ 664
TL++ S V+ D+T + I +++ VK IN + VP S+ SP V+
Sbjct: 678 TLLTSSSTVNVDVTADGITKRIP-VKYINSASVPASATVATSPVTVK 723
>pdb|4AQ1|C Chain C, Structure Of The Sbsb S-Layer Protein Of Geobacillus
Stearothermophilus Pv72p2 In Complex With Nanobody Kb6
Length = 892
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 618 TLISPGSVVSKDITTEKIYRKVESVKPINHSQVPGSSPTPLSPSIVQ 664
TL++ S V+ D+T + I +++ VK IN + VP S+ SP V+
Sbjct: 678 TLLTSSSTVNVDVTADGITKRIP-VKYINSASVPASATVATSPVTVK 723
>pdb|3OF6|D Chain D, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|E Chain E, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|F Chain F, Human Pre-T Cell Receptor Crystal Structure
Length = 130
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 545 PPNKGSYTNSMHVSYPPSRYNSAPPALALTSPKEPGSGTNSRGSSPLTSPGSVAS 599
P G++TN H+S P S P + T PG+ +SR + P+ G ++
Sbjct: 68 PATDGTWTNLAHLSLPSEELASWEPLVCHTG---PGAEGHSRSTQPMHLSGEAST 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,245,990
Number of Sequences: 62578
Number of extensions: 1087936
Number of successful extensions: 2632
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2601
Number of HSP's gapped (non-prelim): 29
length of query: 1135
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1026
effective length of database: 8,152,335
effective search space: 8364295710
effective search space used: 8364295710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)