Query 001156
Match_columns 1135
No_of_seqs 575 out of 2122
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 17:20:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 4E-57 8.8E-62 522.8 27.0 268 4-304 3-282 (434)
2 KOG1924 RhoA GTPase effector D 100.0 3.3E-52 7.1E-57 481.1 35.0 241 871-1111 696-1007(1102)
3 smart00498 FH2 Formin Homology 100.0 3E-44 6.5E-49 425.1 28.8 247 868-1115 74-392 (432)
4 PF02181 FH2: Formin Homology 100.0 1.5E-40 3.3E-45 387.4 21.6 224 871-1094 76-370 (370)
5 KOG1923 Rac1 GTPase effector F 100.0 4.9E-34 1.1E-38 334.1 28.7 244 871-1116 440-749 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 3.7E-30 8E-35 287.0 27.7 243 871-1122 351-668 (817)
7 KOG1922 Rho GTPase effector BN 100.0 4.7E-29 1E-33 318.5 30.4 238 870-1107 465-793 (833)
8 PF10409 PTEN_C2: C2 domain of 99.9 1.2E-22 2.7E-27 203.5 13.0 121 198-343 1-133 (134)
9 PTZ00242 protein tyrosine phos 99.6 4.9E-14 1.1E-18 146.4 16.4 152 12-192 7-159 (166)
10 PTZ00393 protein tyrosine phos 99.4 4.8E-12 1E-16 136.1 14.4 146 15-193 86-231 (241)
11 KOG1924 RhoA GTPase effector D 99.3 5.8E-10 1.3E-14 132.2 24.7 32 1084-1117 976-1007(1102)
12 KOG1720 Protein tyrosine phosp 99.3 7.3E-11 1.6E-15 122.7 14.1 157 11-190 48-207 (225)
13 PF05706 CDKN3: Cyclin-depende 99.0 1.1E-09 2.4E-14 111.7 9.1 123 21-156 41-168 (168)
14 PHA03247 large tegument protei 99.0 3.4E-07 7.4E-12 120.6 33.0 16 946-961 3108-3123(3151)
15 smart00195 DSPc Dual specifici 98.9 1.8E-08 3.8E-13 101.4 14.3 136 17-189 2-137 (138)
16 PHA03247 large tegument protei 98.9 1.6E-06 3.4E-11 114.6 32.7 7 240-246 2162-2168(3151)
17 COG2453 CDC14 Predicted protei 98.8 2.4E-08 5.2E-13 105.5 11.1 97 80-190 70-166 (180)
18 PF00782 DSPc: Dual specificit 98.7 3.3E-08 7.2E-13 98.6 9.5 122 48-189 11-132 (133)
19 PRK12361 hypothetical protein; 98.7 1.9E-07 4E-12 115.2 15.8 143 15-190 94-236 (547)
20 cd00127 DSPc Dual specificity 98.6 5.1E-07 1.1E-11 90.5 13.2 117 16-160 2-119 (139)
21 smart00012 PTPc_DSPc Protein t 98.6 4E-07 8.7E-12 86.1 10.6 90 88-187 8-102 (105)
22 smart00404 PTPc_motif Protein 98.6 4E-07 8.7E-12 86.1 10.6 90 88-187 8-102 (105)
23 KOG1719 Dual specificity phosp 98.5 5.3E-07 1.1E-11 89.8 8.3 97 79-190 72-169 (183)
24 KOG3671 Actin regulatory prote 98.3 2.5E-05 5.4E-10 90.4 17.2 21 855-875 500-520 (569)
25 KOG3671 Actin regulatory prote 98.2 3E-05 6.6E-10 89.7 15.9 17 855-871 473-489 (569)
26 KOG2836 Protein tyrosine phosp 98.2 6E-05 1.3E-09 73.6 14.8 148 10-188 6-153 (173)
27 cd00047 PTPc Protein tyrosine 97.9 3.8E-05 8.2E-10 84.2 10.2 87 90-187 138-228 (231)
28 PRK15375 pathogenicity island 97.8 0.00013 2.9E-09 86.3 11.3 96 83-188 423-526 (535)
29 smart00194 PTPc Protein tyrosi 97.6 0.00015 3.2E-09 81.0 9.1 87 89-187 165-255 (258)
30 PF00102 Y_phosphatase: Protei 97.5 0.00027 5.8E-09 77.0 8.2 87 89-187 142-232 (235)
31 KOG0792 Protein tyrosine phosp 97.4 0.00035 7.6E-09 87.6 7.9 89 89-186 1035-1124(1144)
32 PF03162 Y_phosphatase2: Tyros 97.3 0.00058 1.2E-08 71.2 8.2 143 13-189 4-148 (164)
33 KOG2386 mRNA capping enzyme, g 96.9 0.0028 6.1E-08 73.7 8.5 130 29-167 36-169 (393)
34 KOG1830 Wiskott Aldrich syndro 96.8 0.018 3.8E-07 66.2 13.7 30 858-887 444-473 (518)
35 PHA02747 protein tyrosine phos 96.7 0.0071 1.5E-07 69.7 10.3 91 84-184 183-288 (312)
36 PLN02727 NAD kinase 96.5 0.0031 6.7E-08 79.5 6.0 93 44-148 271-368 (986)
37 KOG1830 Wiskott Aldrich syndro 96.5 0.025 5.5E-07 64.9 12.3 17 854-870 460-476 (518)
38 KOG0790 Protein tyrosine phosp 96.4 0.0038 8.1E-08 72.0 5.5 85 89-187 421-516 (600)
39 PHA02740 protein tyrosine phos 96.3 0.011 2.4E-07 67.6 8.6 94 84-187 177-283 (298)
40 PHA02742 protein tyrosine phos 96.3 0.017 3.6E-07 66.4 9.9 89 89-187 190-291 (303)
41 KOG1716 Dual specificity phosp 96.2 0.059 1.3E-06 61.3 13.5 63 120-192 155-217 (285)
42 PHA02738 hypothetical protein; 96.1 0.021 4.4E-07 66.1 9.4 94 85-188 179-290 (320)
43 PHA02746 protein tyrosine phos 96.1 0.022 4.7E-07 66.0 9.6 89 89-187 209-309 (323)
44 TIGR01244 conserved hypothetic 96.0 0.05 1.1E-06 54.9 10.4 115 15-159 1-121 (135)
45 PF13350 Y_phosphatase3: Tyros 95.7 0.014 3.1E-07 60.7 5.3 38 108-148 114-151 (164)
46 KOG0791 Protein tyrosine phosp 95.6 0.035 7.7E-07 63.5 8.0 106 80-194 250-357 (374)
47 PF14566 PTPlike_phytase: Inos 95.1 0.025 5.5E-07 58.1 4.5 59 80-145 90-148 (149)
48 COG5599 PTP2 Protein tyrosine 94.7 0.04 8.7E-07 60.4 5.1 43 99-146 200-243 (302)
49 KOG1572 Predicted protein tyro 93.3 0.26 5.7E-06 53.6 7.8 97 48-149 78-176 (249)
50 COG2365 Protein tyrosine/serin 92.8 0.19 4.1E-06 56.1 6.2 30 121-151 137-166 (249)
51 KOG4228 Protein tyrosine phosp 92.6 0.15 3.3E-06 65.6 5.6 73 60-148 968-1045(1087)
52 KOG1717 Dual specificity phosp 92.4 0.27 6E-06 54.0 6.4 67 87-160 222-289 (343)
53 KOG0789 Protein tyrosine phosp 91.9 0.43 9.4E-06 56.9 8.3 86 90-188 272-363 (415)
54 KOG1923 Rac1 GTPase effector F 91.1 0.65 1.4E-05 57.7 8.5 20 859-880 367-386 (830)
55 KOG0994 Extracellular matrix g 89.7 5.5 0.00012 51.7 14.7 41 874-915 1471-1518(1758)
56 KOG1718 Dual specificity phosp 89.4 5.6 0.00012 41.5 12.1 124 6-159 7-131 (198)
57 PF04273 DUF442: Putative phos 88.2 1.2 2.6E-05 43.5 6.3 97 15-139 1-103 (110)
58 PF14671 DSPn: Dual specificit 87.9 0.51 1.1E-05 48.0 3.7 62 97-159 43-107 (141)
59 KOG0793 Protein tyrosine phosp 87.4 0.69 1.5E-05 56.7 4.9 67 89-159 899-970 (1004)
60 KOG2002 TPR-containing nuclear 87.0 8.4 0.00018 49.7 14.0 32 1005-1036 712-745 (1018)
61 KOG4228 Protein tyrosine phosp 86.3 0.31 6.7E-06 62.9 1.3 44 90-139 703-748 (1087)
62 PF12325 TMF_TATA_bd: TATA ele 85.0 15 0.00032 36.5 12.1 55 1042-1098 63-117 (120)
63 KOG4302 Microtubule-associated 84.9 13 0.00027 46.9 14.1 207 876-1102 20-247 (660)
64 PF10147 CR6_interact: Growth 83.6 23 0.00051 38.7 13.8 38 1038-1075 137-174 (217)
65 PLN00047 photosystem II biogen 81.4 8.8 0.00019 43.2 9.8 29 988-1017 104-133 (283)
66 PF08580 KAR9: Yeast cortical 79.9 38 0.00083 43.4 16.0 89 986-1074 160-269 (683)
67 COG5350 Predicted protein tyro 79.0 10 0.00023 38.9 8.5 112 14-148 7-122 (172)
68 KOG4848 Extracellular matrix-a 77.8 58 0.0013 34.6 13.7 47 1056-1120 166-214 (225)
69 KOG4673 Transcription factor T 77.5 75 0.0016 39.8 16.4 53 1048-1102 905-957 (961)
70 PHA03378 EBNA-3B; Provisional 74.6 35 0.00075 42.5 12.6 14 97-110 105-118 (991)
71 PF09602 PhaP_Bmeg: Polyhydrox 74.6 55 0.0012 34.3 12.4 88 1021-1113 51-139 (165)
72 PRK11637 AmiB activator; Provi 74.4 89 0.0019 37.8 16.6 17 943-959 99-115 (428)
73 PF06160 EzrA: Septation ring 73.7 74 0.0016 40.0 16.1 22 1054-1075 351-372 (560)
74 KOG0994 Extracellular matrix g 73.3 39 0.00084 44.5 13.0 29 965-1000 1470-1498(1758)
75 COG4942 Membrane-bound metallo 71.4 1.3E+02 0.0029 36.1 16.4 14 966-979 114-127 (420)
76 PRK13266 Thf1-like protein; Re 70.8 18 0.00038 39.9 8.4 51 966-1017 27-82 (225)
77 KOG0995 Centromere-associated 69.9 24 0.00053 43.3 10.0 130 961-1101 153-286 (581)
78 KOG1532 GTPase XAB1, interacts 69.1 32 0.00068 38.9 9.9 34 1077-1110 250-283 (366)
79 cd07638 BAR_ACAP2 The Bin/Amph 69.1 92 0.002 33.8 13.4 52 1019-1074 3-57 (200)
80 cd08393 C2A_SLP-1_2 C2 domain 69.1 32 0.00069 34.0 9.3 97 199-304 13-113 (125)
81 PF09325 Vps5: Vps5 C terminal 68.3 68 0.0015 35.1 12.7 58 1042-1103 172-229 (236)
82 PRK11637 AmiB activator; Provi 66.4 84 0.0018 38.0 14.0 27 1042-1068 105-131 (428)
83 PHA03378 EBNA-3B; Provisional 65.6 70 0.0015 40.0 12.6 9 176-184 160-168 (991)
84 cd07639 BAR_ACAP1 The Bin/Amph 65.3 1.6E+02 0.0035 32.0 14.3 17 1020-1036 4-20 (200)
85 cd07637 BAR_ACAP3 The Bin/Amph 64.3 2.2E+02 0.0047 31.0 15.9 65 1037-1101 91-157 (200)
86 KOG3878 Protein involved in ma 64.0 4.2 9E-05 46.0 2.0 36 988-1023 27-64 (469)
87 cd08375 C2_Intersectin C2 doma 63.8 48 0.001 33.4 9.6 86 201-300 15-101 (136)
88 KOG0163 Myosin class VI heavy 63.7 40 0.00087 42.5 10.2 20 1051-1070 893-912 (1259)
89 cd04030 C2C_KIAA1228 C2 domain 63.5 52 0.0011 32.1 9.7 94 199-298 14-109 (127)
90 cd08387 C2A_Synaptotagmin-8 C2 63.4 54 0.0012 32.0 9.7 94 199-303 14-110 (124)
91 COG5185 HEC1 Protein involved 63.1 24 0.00053 42.0 8.0 16 914-929 130-145 (622)
92 smart00498 FH2 Formin Homology 62.8 41 0.00089 40.8 10.4 83 1018-1100 324-431 (432)
93 cd07307 BAR The Bin/Amphiphysi 62.3 1.5E+02 0.0034 30.3 13.5 38 944-981 4-46 (194)
94 PF10168 Nup88: Nuclear pore c 61.8 1.7E+02 0.0038 37.9 16.1 56 1038-1093 591-648 (717)
95 KOG2357 Uncharacterized conser 61.8 20 0.00044 42.2 7.0 65 1050-1114 339-404 (440)
96 PF03114 BAR: BAR domain; Int 61.4 1.7E+02 0.0037 31.1 14.1 10 1063-1072 74-83 (229)
97 KOG4302 Microtubule-associated 61.0 3.9E+02 0.0085 34.2 18.3 129 942-1085 228-358 (660)
98 cd07617 BAR_Endophilin_B2 The 61.0 1.6E+02 0.0035 32.5 13.4 48 1042-1094 156-203 (220)
99 cd08682 C2_Rab11-FIP_classI C2 60.9 40 0.00088 33.1 8.3 86 206-303 4-93 (126)
100 cd08685 C2_RGS-like C2 domain 60.9 65 0.0014 31.6 9.7 93 200-301 11-105 (119)
101 cd04042 C2A_MCTP_PRT C2 domain 60.5 56 0.0012 31.8 9.2 88 203-304 2-90 (121)
102 PF04108 APG17: Autophagy prot 59.9 1.6E+02 0.0035 35.5 14.7 26 1011-1036 242-269 (412)
103 cd01518 RHOD_YceA Member of th 59.7 35 0.00075 32.1 7.3 78 45-146 7-84 (101)
104 PF08397 IMD: IRSp53/MIM homol 59.0 87 0.0019 34.3 11.2 59 1045-1111 56-114 (219)
105 cd08402 C2B_Synaptotagmin-1 C2 58.9 39 0.00084 33.7 7.9 94 198-299 12-107 (136)
106 cd04041 C2A_fungal C2 domain f 58.4 57 0.0012 31.4 8.7 74 203-284 3-79 (111)
107 PF03999 MAP65_ASE1: Microtubu 58.4 14 0.00031 46.8 5.7 38 1037-1074 283-320 (619)
108 cd04048 C2A_Copine C2 domain f 58.2 63 0.0014 31.4 9.1 90 207-302 6-99 (120)
109 PF07462 MSP1_C: Merozoite sur 57.6 1.2E+02 0.0027 37.2 12.7 19 946-964 393-411 (574)
110 KOG1925 Rac1 GTPase effector F 57.4 4.4E+02 0.0095 32.2 17.4 44 865-916 286-329 (817)
111 PF11264 ThylakoidFormat: Thyl 57.1 50 0.0011 36.2 8.7 29 988-1017 48-77 (216)
112 cd04054 C2A_Rasal1_RasA4 C2 do 57.1 1E+02 0.0022 30.2 10.3 29 203-231 2-31 (121)
113 cd08385 C2A_Synaptotagmin-1-5- 57.1 66 0.0014 31.4 9.0 92 199-301 14-108 (124)
114 cd08384 C2B_Rabphilin_Doc2 C2 57.0 37 0.00081 33.6 7.4 93 199-300 11-106 (133)
115 cd07595 BAR_RhoGAP_Rich-like T 56.8 3.2E+02 0.007 30.6 15.3 46 1044-1094 162-207 (244)
116 cd04037 C2E_Ferlin C2 domain f 56.7 47 0.001 32.7 8.0 92 203-306 2-94 (124)
117 TIGR02894 DNA_bind_RsfA transc 56.7 83 0.0018 32.8 9.7 26 970-998 31-56 (161)
118 PF15466 DUF4635: Domain of un 56.4 24 0.00051 34.5 5.3 42 1026-1067 84-125 (135)
119 KOG4672 Uncharacterized conser 56.2 63 0.0014 38.1 9.6 19 38-56 11-29 (487)
120 cd07596 BAR_SNX The Bin/Amphip 56.0 1.5E+02 0.0032 31.7 12.4 56 1042-1101 154-209 (218)
121 PF09726 Macoilin: Transmembra 56.0 52 0.0011 42.4 10.0 66 1045-1116 458-523 (697)
122 cd08386 C2A_Synaptotagmin-7 C2 53.8 41 0.0009 32.8 7.0 32 199-230 14-46 (125)
123 KOG2007 Cysteinyl-tRNA synthet 53.4 2.3E+02 0.0049 34.8 13.8 13 219-231 29-41 (586)
124 PRK00142 putative rhodanese-re 53.3 44 0.00095 38.8 8.1 104 17-146 89-194 (314)
125 PRK04778 septation ring format 53.3 5.6E+02 0.012 32.3 18.4 20 1037-1056 314-333 (569)
126 PF08397 IMD: IRSp53/MIM homol 53.2 61 0.0013 35.5 8.8 9 1086-1094 150-158 (219)
127 TIGR02131 phaP_Bmeg polyhydrox 52.8 1.2E+02 0.0027 30.6 9.7 54 1051-1104 82-145 (165)
128 PRK04195 replication factor C 52.6 2.9E+02 0.0063 34.0 15.6 22 1053-1074 375-396 (482)
129 cd04050 C2B_Synaptotagmin-like 52.3 88 0.0019 29.7 8.8 82 203-301 2-84 (105)
130 PF12054 DUF3535: Domain of un 52.1 2.2E+02 0.0049 34.7 14.2 51 942-1001 185-245 (441)
131 cd08677 C2A_Synaptotagmin-13 C 52.0 1.2E+02 0.0025 30.3 9.6 94 198-301 11-104 (118)
132 KOG0260 RNA polymerase II, lar 51.9 6.8E+02 0.015 34.1 18.3 10 221-230 1103-1112(1605)
133 KOG0163 Myosin class VI heavy 51.8 43 0.00093 42.2 7.8 20 203-222 345-364 (1259)
134 cd08388 C2A_Synaptotagmin-4-11 51.4 86 0.0019 31.1 8.9 32 199-230 14-47 (128)
135 cd07627 BAR_Vps5p The Bin/Amph 51.4 1.6E+02 0.0034 32.2 11.7 58 1041-1102 151-208 (216)
136 cd07638 BAR_ACAP2 The Bin/Amph 50.8 3.6E+02 0.0079 29.3 16.1 69 1034-1102 88-158 (200)
137 cd08376 C2B_MCTP_PRT C2 domain 50.6 1.1E+02 0.0024 29.3 9.3 84 203-300 2-86 (116)
138 cd08688 C2_KIAA0528-like C2 do 50.5 1.2E+02 0.0026 29.0 9.5 87 204-301 2-90 (110)
139 cd04036 C2_cPLA2 C2 domain pre 50.3 78 0.0017 30.7 8.3 87 203-301 2-89 (119)
140 cd08403 C2B_Synaptotagmin-3-5- 49.9 1.1E+02 0.0023 30.4 9.4 94 199-299 12-106 (134)
141 KOG0307 Vesicle coat complex C 49.8 8E+02 0.017 33.0 28.1 21 956-976 1025-1045(1049)
142 KOG0933 Structural maintenance 49.5 1.6E+02 0.0034 38.9 12.3 26 952-979 601-626 (1174)
143 cd04020 C2B_SLP_1-2-3-4 C2 dom 49.3 1.1E+02 0.0024 31.8 9.7 94 200-302 26-123 (162)
144 KOG2256 Predicted protein invo 49.0 1.4E+02 0.0029 37.7 11.5 42 960-1001 457-500 (661)
145 cd00276 C2B_Synaptotagmin C2 d 48.9 1E+02 0.0023 30.1 9.1 33 199-231 12-45 (134)
146 cd04040 C2D_Tricalbin-like C2 48.8 1E+02 0.0022 29.5 8.7 28 204-231 2-30 (115)
147 PRK01415 hypothetical protein; 48.6 78 0.0017 35.5 8.8 103 18-147 91-195 (247)
148 KOG3091 Nuclear pore complex, 48.5 1.3E+02 0.0028 36.7 10.8 56 942-1004 385-448 (508)
149 cd07623 BAR_SNX1_2 The Bin/Amp 48.2 2.5E+02 0.0055 30.8 12.7 20 942-961 21-40 (224)
150 PF07200 Mod_r: Modifier of ru 48.1 95 0.002 31.7 8.8 43 1051-1102 100-142 (150)
151 cd08382 C2_Smurf-like C2 domai 47.9 1.3E+02 0.0028 29.5 9.4 69 203-285 2-71 (123)
152 PF00168 C2: C2 domain; Inter 47.7 1.5E+02 0.0033 25.8 9.2 73 203-286 1-75 (85)
153 PF10234 Cluap1: Clusterin-ass 47.1 4.8E+02 0.01 29.7 16.3 52 966-1017 82-142 (267)
154 cd07637 BAR_ACAP3 The Bin/Amph 46.5 4.2E+02 0.0091 28.8 14.1 18 1019-1036 3-20 (200)
155 PF07431 DUF1512: Protein of u 46.4 1.2E+02 0.0025 35.7 9.8 67 1037-1103 37-105 (355)
156 PF11559 ADIP: Afadin- and alp 46.2 3.4E+02 0.0074 27.7 14.5 66 1037-1115 77-142 (151)
157 cd07639 BAR_ACAP1 The Bin/Amph 46.1 4.3E+02 0.0093 28.8 15.4 142 937-1102 5-158 (200)
158 cd04022 C2A_MCTP_PRT_plant C2 46.1 1.4E+02 0.003 29.3 9.4 29 203-231 2-31 (127)
159 PF06120 Phage_HK97_TLTM: Tail 45.9 4.9E+02 0.011 30.2 14.7 65 1037-1101 78-144 (301)
160 PRK07720 fliJ flagellar biosyn 45.7 1.1E+02 0.0023 31.3 8.7 13 989-1001 3-15 (146)
161 cd07665 BAR_SNX1 The Bin/Amphi 45.1 3.9E+02 0.0084 29.8 13.4 57 1042-1102 168-224 (234)
162 PF15254 CCDC14: Coiled-coil d 45.1 5.8E+02 0.013 33.1 16.0 64 1038-1101 460-525 (861)
163 PF04642 DUF601: Protein of un 44.7 2.1E+02 0.0045 31.9 10.7 52 1019-1070 187-240 (311)
164 PF13764 E3_UbLigase_R4: E3 ub 44.7 6E+02 0.013 33.5 16.9 16 962-977 188-203 (802)
165 cd07664 BAR_SNX2 The Bin/Amphi 44.7 3.3E+02 0.0073 30.3 12.9 54 1042-1099 168-221 (234)
166 KOG4809 Rab6 GTPase-interactin 44.6 2.8E+02 0.0062 34.2 12.8 36 942-979 333-368 (654)
167 PRK05320 rhodanese superfamily 44.5 62 0.0014 36.5 7.3 83 43-145 113-197 (257)
168 KOG2072 Translation initiation 44.4 2.7E+02 0.0059 36.1 13.0 24 1048-1071 730-753 (988)
169 KOG4471 Phosphatidylinositol 3 44.4 1.6E+02 0.0035 36.7 10.9 56 7-65 222-285 (717)
170 KOG0979 Structural maintenance 44.3 1.9E+02 0.004 38.3 12.0 26 992-1017 157-182 (1072)
171 PF12729 4HB_MCP_1: Four helix 44.3 3.4E+02 0.0074 27.2 12.7 26 1047-1072 109-134 (181)
172 cd07634 BAR_GAP10-like The Bin 44.1 3.8E+02 0.0083 29.3 12.8 13 1083-1095 69-81 (207)
173 cd07606 BAR_SFC_plant The Bin/ 43.9 4.6E+02 0.01 28.6 13.9 50 1019-1072 2-51 (202)
174 cd08390 C2A_Synaptotagmin-15-1 43.6 1.4E+02 0.003 28.9 8.9 32 199-230 12-45 (123)
175 cd07594 BAR_Endophilin_B The B 43.4 3.9E+02 0.0085 29.7 13.1 46 1044-1094 167-212 (229)
176 cd07616 BAR_Endophilin_B1 The 43.4 4.2E+02 0.0091 29.5 13.3 49 1044-1097 167-215 (229)
177 cd07636 BAR_GRAF The Bin/Amphi 43.2 4.1E+02 0.0088 29.2 12.9 33 1037-1069 17-49 (207)
178 cd07667 BAR_SNX30 The Bin/Amph 43.1 4.7E+02 0.01 29.3 13.6 12 961-972 6-17 (240)
179 PF07889 DUF1664: Protein of u 43.0 1.2E+02 0.0025 30.6 8.1 42 988-1036 25-68 (126)
180 PF13764 E3_UbLigase_R4: E3 ub 42.9 2.5E+02 0.0053 36.9 13.0 29 989-1017 288-317 (802)
181 PF09403 FadA: Adhesion protei 42.5 3.7E+02 0.0081 27.1 11.8 50 1019-1068 28-80 (126)
182 cd04025 C2B_RasA1_RasA4 C2 dom 42.4 1.9E+02 0.0041 28.1 9.7 29 203-231 2-31 (123)
183 KOG1118 Lysophosphatidic acid 42.4 1.2E+02 0.0025 34.8 8.7 67 969-1036 89-158 (366)
184 PF04156 IncA: IncA protein; 41.8 4.5E+02 0.0097 27.8 14.2 28 1040-1067 123-150 (191)
185 PRK10869 recombination and rep 41.6 8.2E+02 0.018 30.8 17.2 19 956-974 214-232 (553)
186 cd08681 C2_fungal_Inn1p-like C 41.4 1.2E+02 0.0027 29.1 8.1 85 203-301 3-88 (118)
187 cd04032 C2_Perforin C2 domain 41.2 1.3E+02 0.0027 30.2 8.2 75 212-300 39-114 (127)
188 cd08410 C2B_Synaptotagmin-17 C 41.0 1.3E+02 0.0029 30.0 8.4 93 198-300 11-107 (135)
189 cd08680 C2_Kibra C2 domain fou 41.0 1.4E+02 0.003 29.7 8.5 33 198-230 11-44 (124)
190 cd04029 C2A_SLP-4_5 C2 domain 40.9 2.1E+02 0.0045 28.3 9.7 97 199-305 13-114 (125)
191 PF08336 P4Ha_N: Prolyl 4-Hydr 40.6 3.9E+02 0.0085 26.8 12.6 71 1027-1103 9-83 (134)
192 KOG0132 RNA polymerase II C-te 40.3 9.6E+02 0.021 31.2 19.5 20 38-57 38-57 (894)
193 KOG2199 Signal transducing ada 40.2 2.8E+02 0.006 33.1 11.5 28 952-979 13-40 (462)
194 PRK00409 recombination and DNA 40.1 3E+02 0.0066 36.2 13.5 47 1020-1066 518-567 (782)
195 cd08392 C2A_SLP-3 C2 domain fi 40.0 2.1E+02 0.0046 28.5 9.6 96 199-303 13-112 (128)
196 PF09766 FimP: Fms-interacting 39.9 2.5E+02 0.0054 33.3 11.7 50 1041-1090 27-78 (355)
197 cd07602 BAR_RhoGAP_OPHN1-like 39.8 4.7E+02 0.01 28.7 12.7 104 1025-1128 2-114 (207)
198 cd08408 C2B_Synaptotagmin-14_1 39.7 1.1E+02 0.0024 30.9 7.7 93 198-300 12-109 (138)
199 PF07462 MSP1_C: Merozoite sur 39.7 1.8E+02 0.004 35.8 10.4 67 1018-1097 54-136 (574)
200 cd08406 C2B_Synaptotagmin-12 C 39.5 83 0.0018 31.8 6.7 34 197-230 11-45 (136)
201 cd07603 BAR_ACAPs The Bin/Amph 39.5 5.3E+02 0.012 28.0 19.3 141 937-1101 5-157 (200)
202 cd07601 BAR_APPL The Bin/Amphi 39.4 5.6E+02 0.012 28.2 13.5 33 1037-1069 17-49 (215)
203 PF06705 SF-assemblin: SF-asse 39.0 5.2E+02 0.011 28.8 13.6 22 1051-1072 89-110 (247)
204 cd08521 C2A_SLP C2 domain firs 38.9 2.2E+02 0.0047 27.5 9.5 32 199-230 12-45 (123)
205 PF01591 6PF2K: 6-phosphofruct 38.6 31 0.00068 38.0 3.7 87 23-127 14-103 (222)
206 smart00188 IL10 Interleukin-10 38.5 1E+02 0.0022 31.5 6.9 50 1020-1072 73-124 (137)
207 COG4477 EzrA Negative regulato 38.2 8.9E+02 0.019 30.2 19.7 40 1053-1098 353-392 (570)
208 COG5178 PRP8 U5 snRNP spliceos 38.0 45 0.00098 43.8 5.2 13 887-899 83-95 (2365)
209 cd07598 BAR_FAM92 The Bin/Amph 37.8 2.2E+02 0.0048 31.2 10.1 51 1049-1100 56-106 (211)
210 PF06013 WXG100: Proteins of 1 37.8 2.8E+02 0.0061 24.3 10.7 57 1038-1098 9-65 (86)
211 cd04045 C2C_Tricalbin-like C2 37.7 2.6E+02 0.0057 27.3 9.8 29 203-231 3-32 (120)
212 KOG4403 Cell surface glycoprot 37.6 8.1E+02 0.018 29.6 16.8 44 887-930 117-163 (575)
213 TIGR02473 flagell_FliJ flagell 37.1 1.9E+02 0.0042 28.8 9.0 10 991-1000 2-11 (141)
214 COG1826 TatA Sec-independent p 37.1 74 0.0016 30.2 5.5 39 1066-1108 16-54 (94)
215 cd08404 C2B_Synaptotagmin-4 C2 37.0 2.4E+02 0.0052 28.0 9.6 32 199-230 13-45 (136)
216 PRK10132 hypothetical protein; 36.7 1.7E+02 0.0037 28.7 7.9 56 1019-1074 13-86 (108)
217 cd08401 C2A_RasA2_RasA3 C2 dom 36.2 2.5E+02 0.0054 27.5 9.4 83 203-299 2-86 (121)
218 PF04949 Transcrip_act: Transc 36.0 4.3E+02 0.0092 27.4 10.7 59 1037-1097 88-146 (159)
219 PF02646 RmuC: RmuC family; I 35.7 7.4E+02 0.016 28.6 18.3 30 988-1017 103-134 (304)
220 PF12825 DUF3818: Domain of un 35.6 3.8E+02 0.0083 31.6 12.1 72 967-1050 64-145 (341)
221 cd07592 BAR_Endophilin_A The B 35.5 5E+02 0.011 28.7 12.4 43 1045-1092 155-197 (223)
222 cd08678 C2_C21orf25-like C2 do 35.5 2.5E+02 0.0055 27.4 9.4 88 203-304 1-88 (126)
223 KOG0260 RNA polymerase II, lar 35.4 1.4E+03 0.029 31.5 20.0 19 101-120 919-937 (1605)
224 KOG2398 Predicted proline-seri 35.4 2.9E+02 0.0062 35.2 11.7 60 1037-1101 147-206 (611)
225 cd07591 BAR_Rvs161p The Bin/Am 35.1 6.2E+02 0.013 27.9 13.1 60 1042-1101 146-208 (224)
226 PF06008 Laminin_I: Laminin Do 35.0 6.3E+02 0.014 28.4 13.6 74 1020-1094 54-137 (264)
227 cd04009 C2B_Munc13-like C2 dom 35.0 1.6E+02 0.0034 29.3 7.9 31 200-230 15-46 (133)
228 cd08405 C2B_Synaptotagmin-7 C2 34.9 2.3E+02 0.0049 28.1 9.0 32 198-229 12-44 (136)
229 cd07606 BAR_SFC_plant The Bin/ 34.8 6.3E+02 0.014 27.5 18.9 68 1034-1101 90-160 (202)
230 PF09805 Nop25: Nucleolar prot 34.8 54 0.0012 33.4 4.4 18 1085-1102 19-36 (137)
231 cd07593 BAR_MUG137_fungi The B 34.5 4.5E+02 0.0097 29.0 11.7 116 970-1092 58-189 (215)
232 COG5185 HEC1 Protein involved 34.3 4E+02 0.0086 32.4 11.7 36 1001-1036 345-386 (622)
233 cd04031 C2A_RIM1alpha C2 domai 34.2 2.3E+02 0.005 27.4 8.8 33 199-231 14-47 (125)
234 PF05983 Med7: MED7 protein; 34.2 1.5E+02 0.0033 31.1 7.7 57 1046-1102 71-134 (162)
235 PF08317 Spc7: Spc7 kinetochor 34.1 6.7E+02 0.015 29.2 14.0 51 1020-1070 147-200 (325)
236 cd08383 C2A_RasGAP C2 domain ( 34.1 2.7E+02 0.0059 26.4 9.2 26 204-231 3-28 (117)
237 TIGR01884 cas_HTH CRISPR locus 33.9 1.7E+02 0.0037 31.5 8.5 41 104-147 72-115 (203)
238 PF11214 Med2: Mediator comple 33.9 1.9E+02 0.0042 28.1 7.6 14 1082-1095 57-70 (105)
239 PF07083 DUF1351: Protein of u 33.8 5.2E+02 0.011 28.4 12.2 56 1041-1101 40-95 (215)
240 TIGR02231 conserved hypothetic 33.6 5.1E+02 0.011 32.2 13.7 14 1019-1032 72-85 (525)
241 PF10168 Nup88: Nuclear pore c 33.1 61 0.0013 41.9 5.6 67 1037-1105 597-663 (717)
242 TIGR03545 conserved hypothetic 33.1 2.2E+02 0.0047 35.9 10.1 54 1019-1076 220-277 (555)
243 PRK05849 hypothetical protein; 33.0 2.8E+02 0.0061 36.4 11.4 53 1037-1094 573-633 (783)
244 KOG2307 Low density lipoprotei 33.0 4.7E+02 0.01 32.6 12.3 76 990-1066 13-94 (705)
245 PF09727 CortBP2: Cortactin-bi 32.9 3E+02 0.0065 29.8 9.7 33 1081-1113 127-159 (192)
246 PF06602 Myotub-related: Myotu 32.8 85 0.0018 37.1 6.3 21 119-140 230-250 (353)
247 KOG3091 Nuclear pore complex, 32.8 5.3E+02 0.011 31.7 12.6 59 942-1017 336-394 (508)
248 PF07106 TBPIP: Tat binding pr 32.7 3.4E+02 0.0073 28.4 10.2 26 1043-1068 112-137 (169)
249 COG0497 RecN ATPase involved i 32.6 5.3E+02 0.011 32.4 13.1 30 1042-1071 299-328 (557)
250 PRK14950 DNA polymerase III su 32.6 2.2E+02 0.0048 36.0 10.4 29 105-135 23-52 (585)
251 KOG2460 Signal recognition par 32.5 1.1E+03 0.023 29.5 15.1 63 1037-1099 419-484 (593)
252 PF05377 FlaC_arch: Flagella a 32.4 1.9E+02 0.0042 24.9 6.5 29 1042-1070 16-44 (55)
253 KOG2211 Predicted Golgi transp 32.4 6.2E+02 0.014 32.3 13.3 70 948-1017 150-219 (797)
254 cd04038 C2_ArfGAP C2 domain pr 32.1 3.8E+02 0.0082 27.4 10.2 82 203-300 4-86 (145)
255 cd08381 C2B_PI3K_class_II C2 d 32.0 2.9E+02 0.0063 27.1 9.1 93 200-302 12-108 (122)
256 KOG4460 Nuclear pore complex, 32.0 9E+02 0.02 30.2 14.2 39 1038-1076 614-652 (741)
257 TIGR03060 PS_II_psb29 photosys 32.0 1.3E+02 0.0028 33.0 7.0 67 966-1033 27-104 (214)
258 cd08675 C2B_RasGAP C2 domain s 31.8 1.9E+02 0.0042 29.0 8.0 24 208-231 6-29 (137)
259 KOG3745 Exocyst subunit - Sec1 31.7 5.6E+02 0.012 33.2 13.1 23 1048-1070 330-352 (763)
260 COG5178 PRP8 U5 snRNP spliceos 31.6 35 0.00076 44.7 2.9 14 905-918 252-265 (2365)
261 cd08377 C2C_MCTP_PRT C2 domain 31.5 3.3E+02 0.007 26.0 9.3 29 203-231 3-32 (119)
262 cd08373 C2A_Ferlin C2 domain f 31.4 2.6E+02 0.0056 27.3 8.7 79 209-300 4-82 (127)
263 cd08391 C2A_C2C_Synaptotagmin_ 31.3 2.9E+02 0.0063 26.4 8.9 83 203-300 3-92 (121)
264 PRK04863 mukB cell division pr 31.3 9.3E+02 0.02 34.2 16.4 35 942-976 232-266 (1486)
265 PF04108 APG17: Autophagy prot 31.0 2.9E+02 0.0063 33.4 10.6 17 1084-1100 335-351 (412)
266 cd04043 C2_Munc13_fungal C2 do 30.9 3.8E+02 0.0083 25.9 9.8 86 203-299 3-89 (126)
267 KOG0972 Huntingtin interacting 30.8 5.7E+02 0.012 29.3 11.6 22 1049-1070 261-282 (384)
268 PF05600 DUF773: Protein of un 30.7 6.7E+02 0.015 31.3 13.7 60 1037-1097 135-194 (507)
269 PF07174 FAP: Fibronectin-atta 30.6 2.3E+02 0.0049 32.1 8.5 9 864-872 123-131 (297)
270 COG4942 Membrane-bound metallo 30.6 9.4E+02 0.02 29.2 14.2 56 1019-1074 67-131 (420)
271 PF13758 Prefoldin_3: Prefoldi 30.4 4.9E+02 0.011 25.2 9.6 60 1049-1108 35-95 (99)
272 cd07657 F-BAR_Fes_Fer The F-BA 30.4 5E+02 0.011 28.9 11.5 6 963-968 40-45 (237)
273 cd04024 C2A_Synaptotagmin-like 30.1 3.3E+02 0.0071 26.4 9.2 29 203-231 3-34 (128)
274 cd04026 C2_PKC_alpha_gamma C2 30.1 3.6E+02 0.0078 26.4 9.5 30 201-230 13-43 (131)
275 PF10154 DUF2362: Uncharacteri 30.1 3.8E+02 0.0081 33.3 11.2 38 1085-1122 108-145 (510)
276 TIGR01069 mutS2 MutS2 family p 29.9 7.4E+02 0.016 32.6 14.6 27 1040-1066 536-562 (771)
277 cd04039 C2_PSD C2 domain prese 29.8 4.6E+02 0.01 25.1 9.9 86 203-301 3-93 (108)
278 KOG0996 Structural maintenance 29.6 6.1E+02 0.013 34.4 13.3 32 1040-1071 327-358 (1293)
279 PF02601 Exonuc_VII_L: Exonucl 29.5 7.6E+02 0.017 28.4 13.4 52 1007-1058 118-183 (319)
280 COG4046 Uncharacterized protei 29.4 2.1E+02 0.0045 33.1 8.1 66 1038-1103 52-118 (368)
281 KOG1962 B-cell receptor-associ 29.0 4.3E+02 0.0093 29.1 10.2 23 1080-1102 182-204 (216)
282 cd08407 C2B_Synaptotagmin-13 C 29.0 3.2E+02 0.0068 27.8 8.9 34 198-231 12-48 (138)
283 PRK11376 hlyE hemolysin E; Pro 28.9 3.9E+02 0.0085 29.3 9.6 44 1025-1068 38-81 (303)
284 KOG0243 Kinesin-like protein [ 28.7 3.8E+02 0.0082 36.0 11.3 17 1020-1036 406-422 (1041)
285 PF03915 AIP3: Actin interacti 28.5 2E+02 0.0043 34.9 8.4 34 1039-1072 291-324 (424)
286 COG1775 HgdB Benzoyl-CoA reduc 28.3 3.6E+02 0.0078 32.0 10.1 65 1020-1086 138-202 (379)
287 cd01443 Cdc25_Acr2p Cdc25 enzy 28.1 1.3E+02 0.0029 28.8 5.9 74 44-137 6-82 (113)
288 cd07588 BAR_Amphiphysin The Bi 28.1 6.2E+02 0.014 27.8 11.5 22 1080-1101 90-111 (211)
289 PF14712 Snapin_Pallidin: Snap 28.0 4.9E+02 0.011 24.1 10.2 43 1030-1072 4-46 (92)
290 KOG2115 Vacuolar sorting prote 28.0 3.8E+02 0.0083 35.2 10.9 27 954-980 340-366 (951)
291 PLN03060 inositol phosphatase- 27.9 1.5E+02 0.0033 32.3 6.6 77 966-1043 25-113 (206)
292 COG1340 Uncharacterized archae 27.8 9.9E+02 0.022 27.6 16.0 18 1083-1100 230-247 (294)
293 PHA00728 hypothetical protein 27.8 64 0.0014 31.7 3.4 14 1062-1075 79-92 (151)
294 cd07668 BAR_SNX9 The Bin/Amphi 27.5 2E+02 0.0043 31.4 7.3 38 1051-1089 74-111 (210)
295 PLN03229 acetyl-coenzyme A car 27.5 1.5E+03 0.032 29.6 16.2 33 1059-1091 513-545 (762)
296 PF14643 DUF4455: Domain of un 27.2 6.3E+02 0.014 31.1 12.7 47 1054-1102 316-362 (473)
297 KOG4849 mRNA cleavage factor I 27.1 7.3E+02 0.016 29.1 11.9 108 692-799 207-332 (498)
298 cd04035 C2A_Rabphilin_Doc2 C2 27.1 3.9E+02 0.0085 25.8 9.1 32 199-230 13-45 (123)
299 PF11727 ISG65-75: Invariant s 26.9 9.2E+02 0.02 27.6 13.2 38 1022-1059 47-85 (286)
300 PF12210 Hrs_helical: Hepatocy 26.8 2.1E+02 0.0046 27.4 6.4 57 1051-1110 33-89 (96)
301 cd07669 BAR_SNX33 The Bin/Amph 26.7 2.5E+02 0.0054 30.7 7.9 38 1051-1089 74-111 (207)
302 PRK14857 tatA twin arginine tr 26.7 87 0.0019 29.7 4.0 40 1067-1110 19-58 (90)
303 cd07590 BAR_Bin3 The Bin/Amphi 26.6 9.1E+02 0.02 26.8 13.1 61 1041-1102 146-210 (225)
304 PF06148 COG2: COG (conserved 26.5 43 0.00092 33.7 2.1 31 1010-1040 14-48 (133)
305 PF12825 DUF3818: Domain of un 26.5 4.3E+02 0.0093 31.2 10.5 18 1078-1095 322-339 (341)
306 cd07603 BAR_ACAPs The Bin/Amph 26.3 8.6E+02 0.019 26.4 13.1 17 1020-1036 4-20 (200)
307 KOG0251 Clathrin assembly prot 26.2 3.1E+02 0.0068 33.9 9.7 148 950-1098 60-254 (491)
308 cd04017 C2D_Ferlin C2 domain f 26.1 3.8E+02 0.0082 26.6 8.9 29 203-231 3-32 (135)
309 PF00581 Rhodanese: Rhodanese- 26.0 2.2E+02 0.0047 26.5 6.9 23 118-142 65-87 (113)
310 PF15165 REC114-like: Meiotic 25.7 1.1E+02 0.0025 33.7 5.2 13 289-301 91-103 (243)
311 KOG1103 Predicted coiled-coil 25.7 3E+02 0.0064 32.0 8.5 21 1091-1111 163-183 (561)
312 cd04052 C2B_Tricalbin-like C2 25.7 2.4E+02 0.0051 27.1 7.1 69 218-300 10-78 (111)
313 PF06070 Herpes_UL32: Herpesvi 25.6 8.5E+02 0.018 32.0 13.4 19 1078-1096 261-279 (839)
314 KOG0213 Splicing factor 3b, su 25.5 1.2E+03 0.026 30.4 14.1 147 949-1101 779-942 (1172)
315 PF07946 DUF1682: Protein of u 25.5 71 0.0015 37.2 4.0 7 974-980 187-193 (321)
316 KOG0388 SNF2 family DNA-depend 25.4 7.1E+02 0.015 32.2 12.2 24 1082-1105 408-431 (1185)
317 KOG0436 Methionyl-tRNA synthet 25.3 35 0.00076 40.5 1.3 40 942-981 432-471 (578)
318 KOG3876 Arfaptin and related p 25.3 2.9E+02 0.0063 31.0 8.1 36 1039-1074 256-291 (341)
319 smart00721 BAR BAR domain. 25.2 8.8E+02 0.019 26.1 12.7 54 1042-1099 172-225 (239)
320 cd07635 BAR_GRAF2 The Bin/Amph 25.2 9.4E+02 0.02 26.4 13.5 97 1025-1121 2-115 (207)
321 TIGR02131 phaP_Bmeg polyhydrox 25.1 7.5E+02 0.016 25.3 13.0 49 1055-1104 115-163 (165)
322 cd08409 C2B_Synaptotagmin-15 C 25.0 4.1E+02 0.0089 26.6 8.9 91 198-300 12-107 (137)
323 COG2882 FliJ Flagellar biosynt 25.0 4.3E+02 0.0094 27.4 9.0 32 1037-1068 68-99 (148)
324 PF05546 She9_MDM33: She9 / Md 25.0 9.1E+02 0.02 26.5 11.7 33 1085-1119 90-122 (207)
325 cd04046 C2_Calpain C2 domain p 24.9 4.8E+02 0.01 25.5 9.3 22 210-231 12-34 (126)
326 PRK15361 pathogenicity island 24.9 8.9E+02 0.019 26.1 11.5 50 925-975 55-104 (195)
327 KOG0307 Vesicle coat complex C 24.9 1.9E+03 0.04 29.8 21.3 15 42-56 103-117 (1049)
328 PF03233 Cauli_AT: Aphid trans 24.8 8.4E+02 0.018 25.7 11.2 42 1051-1092 49-98 (163)
329 cd00030 C2 C2 domain. The C2 d 24.6 4.7E+02 0.01 22.7 9.1 84 206-302 4-88 (102)
330 COG1579 Zn-ribbon protein, pos 24.5 9.2E+02 0.02 27.0 12.0 30 1038-1067 94-123 (239)
331 cd01531 Acr2p Eukaryotic arsen 24.5 4.7E+02 0.01 24.9 9.0 24 43-68 5-28 (113)
332 COG1045 CysE Serine acetyltran 24.3 3E+02 0.0065 29.8 7.9 80 181-278 55-140 (194)
333 COG2882 FliJ Flagellar biosynt 24.2 5.7E+02 0.012 26.5 9.6 12 1086-1097 69-80 (148)
334 KOG4500 Rho/Rac GTPase guanine 24.1 5.3E+02 0.012 31.3 10.4 59 957-1017 321-383 (604)
335 TIGR02764 spore_ybaN_pdaB poly 24.1 3.1E+02 0.0067 28.9 8.3 85 36-127 75-159 (191)
336 cd07633 BAR_OPHN1 The Bin/Amph 24.0 6.9E+02 0.015 27.4 10.6 114 1018-1134 9-146 (207)
337 cd08620 PI-PLCXDc_like_1 Catal 23.9 63 0.0014 37.0 3.1 28 101-129 77-104 (281)
338 cd08389 C2A_Synaptotagmin-14_1 23.9 4.7E+02 0.01 25.7 8.9 33 198-230 13-46 (124)
339 PF04728 LPP: Lipoprotein leuc 23.8 4.9E+02 0.011 22.6 8.3 50 1020-1070 5-54 (56)
340 cd00275 C2_PLC_like C2 domain 23.7 4.6E+02 0.0099 25.3 8.9 29 203-231 4-35 (128)
341 KOG4715 SWI/SNF-related matrix 23.6 8.2E+02 0.018 28.3 11.3 22 910-931 99-120 (410)
342 KOG4368 Predicted RNA binding 23.6 8.5E+02 0.018 30.6 12.2 13 961-973 134-146 (757)
343 PF15015 NYD-SP12_N: Spermatog 23.6 6.2E+02 0.013 30.7 10.8 20 1083-1102 531-550 (569)
344 KOG0164 Myosin class I heavy c 23.5 90 0.0019 39.5 4.3 42 963-1004 264-307 (1001)
345 PRK14858 tatA twin arginine tr 23.2 2.2E+02 0.0048 28.0 6.1 38 1068-1109 18-55 (108)
346 KOG2007 Cysteinyl-tRNA synthet 23.1 8.1E+02 0.018 30.4 11.9 21 1054-1074 434-454 (586)
347 smart00239 C2 Protein kinase C 23.1 5.2E+02 0.011 22.7 9.1 84 204-298 3-87 (101)
348 cd07670 BAR_SNX18 The Bin/Amph 23.1 2.6E+02 0.0056 30.5 7.2 27 1050-1076 73-99 (207)
349 cd09237 V_ScBro1_like Protein- 23.0 9.3E+02 0.02 28.4 12.7 21 943-963 124-144 (356)
350 smart00787 Spc7 Spc7 kinetocho 23.0 1.2E+03 0.025 27.3 13.1 14 948-961 64-77 (312)
351 cd04044 C2A_Tricalbin-like C2 22.9 3.7E+02 0.008 25.8 8.0 84 203-299 4-89 (124)
352 PRK00286 xseA exodeoxyribonucl 22.9 8.2E+02 0.018 29.6 12.6 50 1006-1055 234-297 (438)
353 PHA03246 large tegument protei 22.8 2.4E+03 0.053 31.7 17.2 34 1042-1075 1779-1812(3095)
354 COG4499 Predicted membrane pro 22.7 2E+02 0.0044 34.1 6.7 19 962-981 276-294 (434)
355 TIGR02613 mob_myst_B mobile my 22.7 1.1E+02 0.0024 32.7 4.5 47 101-149 88-146 (186)
356 PRK14160 heat shock protein Gr 22.5 6.2E+02 0.013 27.9 10.1 19 1080-1098 111-129 (211)
357 PF09660 DUF2397: Protein of u 22.4 5.5E+02 0.012 31.8 10.9 190 921-1119 103-313 (486)
358 PF06103 DUF948: Bacterial pro 22.4 5.5E+02 0.012 23.8 8.6 37 1025-1061 29-65 (90)
359 PF13949 ALIX_LYPXL_bnd: ALIX 22.4 1.1E+03 0.025 26.4 13.5 176 920-1102 57-266 (296)
360 cd07601 BAR_APPL The Bin/Amphi 22.4 1.1E+03 0.023 26.1 17.9 144 938-1101 6-163 (215)
361 TIGR02473 flagell_FliJ flagell 22.4 7.7E+02 0.017 24.4 13.4 54 1045-1099 25-79 (141)
362 KOG0250 DNA repair protein RAD 22.2 1E+03 0.022 32.2 13.4 17 881-897 66-82 (1074)
363 PF04179 Init_tRNA_PT: Initiat 22.2 1.1E+02 0.0025 37.2 4.9 39 101-140 358-396 (451)
364 KOG0979 Structural maintenance 22.1 2.1E+03 0.045 29.3 18.9 15 904-918 146-160 (1072)
365 smart00806 AIP3 Actin interact 22.0 1.5E+03 0.032 27.6 14.1 19 1018-1036 250-268 (426)
366 PLN03223 Polycystin cation cha 21.9 1.1E+03 0.023 33.0 13.5 18 1019-1036 1572-1589(1634)
367 cd04028 C2B_RIM1alpha C2 domai 21.9 5.4E+02 0.012 26.4 9.1 31 201-231 29-61 (146)
368 KOG3691 Exocyst complex subuni 21.9 1.2E+03 0.025 31.0 13.4 40 978-1017 18-57 (982)
369 PF07946 DUF1682: Protein of u 21.8 3.3E+02 0.0073 31.7 8.6 10 1052-1061 233-242 (321)
370 cd08676 C2A_Munc13-like C2 dom 21.8 5.1E+02 0.011 26.8 9.0 30 201-230 28-58 (153)
371 COG4372 Uncharacterized protei 21.7 1E+03 0.022 28.5 11.8 16 1018-1033 74-89 (499)
372 TIGR00634 recN DNA repair prot 21.4 4.6E+02 0.01 33.0 10.3 18 957-974 219-236 (563)
373 cd08690 C2_Freud-1 C2 domain f 21.3 6.7E+02 0.015 26.1 9.7 89 204-298 5-102 (155)
374 cd04047 C2B_Copine C2 domain s 21.3 5.7E+02 0.012 24.1 8.8 85 207-300 6-95 (110)
375 cd07685 F-BAR_Fes The F-BAR (F 21.2 1.2E+03 0.025 26.2 11.8 14 1086-1099 133-146 (237)
376 KOG0976 Rho/Rac1-interacting s 21.1 2E+03 0.043 28.7 15.4 203 909-1134 288-531 (1265)
377 PF07793 DUF1631: Protein of u 21.1 2.3E+02 0.005 36.8 7.8 48 1054-1103 427-474 (729)
378 cd04027 C2B_Munc13 C2 domain s 21.0 4.8E+02 0.01 25.6 8.4 29 203-231 3-32 (127)
379 KOG0810 SNARE protein Syntaxin 20.8 9.4E+02 0.02 27.9 11.6 65 1037-1101 79-147 (297)
380 PF15066 CAGE1: Cancer-associa 20.7 1.2E+03 0.025 28.7 12.4 27 1037-1063 450-476 (527)
381 PRK14950 DNA polymerase III su 20.6 5.1E+02 0.011 32.8 10.4 16 48-63 29-44 (585)
382 PF07174 FAP: Fibronectin-atta 20.6 5.3E+02 0.012 29.3 9.1 11 876-886 159-169 (297)
383 KOG0995 Centromere-associated 20.5 1.8E+03 0.038 27.9 15.5 20 976-995 396-417 (581)
384 KOG0041 Predicted Ca2+-binding 20.5 6.7E+02 0.015 27.4 9.4 12 1051-1062 136-147 (244)
385 PF04420 CHD5: CHD5-like prote 20.5 2.2E+02 0.0048 29.7 6.1 52 1019-1070 41-103 (161)
386 PF14943 MRP-S26: Mitochondria 20.3 2.9E+02 0.0062 29.3 6.8 8 1063-1070 40-47 (170)
387 KOG3915 Transcription regulato 20.3 2.8E+02 0.0061 33.4 7.2 39 877-915 202-242 (641)
388 PF03154 Atrophin-1: Atrophin- 20.3 2.2E+03 0.047 28.9 28.2 12 970-983 555-566 (982)
389 PRK09841 cryptic autophosphory 20.2 9.4E+02 0.02 31.3 13.0 28 1047-1074 311-338 (726)
390 PF14644 DUF4456: Domain of un 20.0 7.9E+02 0.017 26.7 10.5 102 1020-1121 27-140 (208)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4e-57 Score=522.82 Aligned_cols=268 Identities=25% Similarity=0.379 Sum_probs=230.6
Q ss_pred hhhhccCCCCCCeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEecc-CCccccccccccccC
Q 001156 4 FRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFRE-GEKRSQISDILSQYD 82 (1135)
Q Consensus 4 ~rr~~~~~~~lDLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~-~~~~s~~~~~~~~f~ 82 (1135)
-||+.+++.||||+|||+||||| +||++++ |+.|||+|++|+.||+++|++| |+|||||. +.|+ .++|+
T Consensus 3 k~r~~~~~~DLDltYIT~rIIam--sfPa~~~-es~yRN~l~dV~~fL~s~H~~~-y~vyNL~~er~yd------~~~f~ 72 (434)
T KOG2283|consen 3 KRRYNEGGFDLDLTYITSRIIAM--SFPAEGI-ESLYRNNLEDVVLFLDSKHKDH-YKVYNLSSERLYD------PSRFH 72 (434)
T ss_pred cchhhhccccccceeeeeeEEEE--eCCCCcc-hhhhcCCHHHHHHHHhhccCCc-eEEEecCccccCC------ccccc
Confidence 47999999999999999999999 8999999 8899999999999999999985 99999994 4454 56899
Q ss_pred CeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHh
Q 001156 83 MTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQ 162 (1135)
Q Consensus 83 ~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~ 162 (1135)
++|..|+|+|||+| +|++|+.||++|++||++ |++||||||||+|+ ||||+||||||+|++++.++++||++|.
T Consensus 73 g~V~~~~~~Dh~~P--~L~~l~~~c~~~~~WL~~-d~~nVvvvHCk~Gk-grtg~~icA~L~~~~~~~ta~eald~~~-- 146 (434)
T KOG2283|consen 73 GRVARFGFDDHNPP--PLELLCPFCKSMDNWLSE-DPKNVVVVHCKAGK-GRTGVMICAYLIYSGISATAEEALDYFN-- 146 (434)
T ss_pred cceeecCCCCCCCC--cHHHHHHHHHCHHHHHhc-CccceEEEEccCCC-cceEEEEeHHHHhhhhcCCHHHHHHHHh--
Confidence 99999999999887 999999999999999999 99999999999999 7999999999999999999999999984
Q ss_pred cchhhhccCCCCCCCchHHHHHHHHHHhccCCCCCCCCC--ceEEEEEEEEcccC--CCCCCceeEEEEEecCCCCCCCC
Q 001156 163 APRELLHLLSPLNPQPSQLRYLQYISRRNLGSDWPPSDT--PLLLNCLILRVLPI--YGGNGCRPVIRVYGQDSKIPANR 238 (1135)
Q Consensus 163 ~~~~~~~~~~~~~~~PSQ~RYv~Yf~~ll~~~~~~p~~~--~l~L~~iil~~iP~--~~~~gcrP~~~Iy~~~~~~~~~~ 238 (1135)
++||..+...++++|||+|||+||++++.....+++.+ +++|++++|..||+ ..++||++++.||+..
T Consensus 147 -~kR~~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~k------- 218 (434)
T KOG2283|consen 147 -EKRFDEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQGK------- 218 (434)
T ss_pred -hhhccccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeecc-------
Confidence 33455554455689999999999999444333456777 99999999999997 7889999999999986
Q ss_pred CCceEEeccccccccccccccceEEEEecccceeecCeEEEEEeccccccc-------cceEEEEEecccccc
Q 001156 239 SSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVHLEDDLVR-------EEMMFRVMFHTAFVL 304 (1135)
Q Consensus 239 ~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~~~~~~-------~~~mFr~~FnT~Fi~ 304 (1135)
+.+|++..+. .++.|.. + ++|+|+.++.++ ++|||.+...+. +..+|.++|||+++.
T Consensus 219 --~~~~~~~s~~-~~~~~~~-~-g~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (434)
T KOG2283|consen 219 --KKVYSFSSDG-IMRLGEL-D-GKIVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFP 282 (434)
T ss_pred --eeeEEeccCC-ccccccc-c-cceecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCcc
Confidence 5677777666 6777766 4 578899888888 999999765544 344666677777643
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.3e-52 Score=481.10 Aligned_cols=241 Identities=28% Similarity=0.506 Sum_probs=219.0
Q ss_pred cccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHhCCChHHHHHhhhccCCCCCCChhhh---------
Q 001156 871 IDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTGDKENLGKCEQ--------- 941 (1135)
Q Consensus 871 LD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~~Pt~eE~~~Lk~~~g~~~~L~~~Eq--------- 941 (1135)
+|.|.|||++|+|++++++++||+.+|+.+|+.+|++..|++|++.+|..|.+..|.++....+.|.+.||
T Consensus 696 lDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vk 775 (1102)
T KOG1924|consen 696 LDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVK 775 (1102)
T ss_pred cchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999888889999888
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhcc
Q 001156 942 ------------------ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTR 1003 (1135)
Q Consensus 942 ------------------v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtK 1003 (1135)
+++|+..+..+..||+|||+|++|..||++||.+|||||+|+.+.+|+||.|++|.||.|||
T Consensus 776 rL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTK 855 (1102)
T KOG1924|consen 776 RLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTK 855 (1102)
T ss_pred ccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhcccc
Confidence 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhhhHH------------------------HHhhhHHHHHHHHHHH---HHH-----------------HHH
Q 001156 1004 ASNSKMTLMHYLCK------------------------IQLKSLAEEMQAIIKG---LEK-----------------TLK 1039 (1135)
Q Consensus 1004 s~d~k~TLLhyLv~------------------------iqL~~L~~e~~~l~k~---Lek-----------------~l~ 1039 (1135)
+.|+++||||||++ ++++.+.+.|+..+.. ||. +|.
T Consensus 856 saDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~ 935 (1102)
T KOG1924|consen 856 SADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMT 935 (1102)
T ss_pred ccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhh
Confidence 99999999999999 1223333333333222 221 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1040 GFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKA 1111 (1135)
Q Consensus 1040 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~ 1111 (1135)
.|.+.|.+++..|...+.+|++.|++|.+||..|++++++||||..|.+|.++|+.|+.||.+++++|++++
T Consensus 936 ~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFrnaf~ea~~en~krRee~Ek~r 1007 (1102)
T KOG1924|consen 936 SFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFRNAFLEAVAENEKRREEEEKER 1007 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998777665443
No 3
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=3e-44 Score=425.05 Aligned_cols=247 Identities=34% Similarity=0.607 Sum_probs=227.6
Q ss_pred ccccccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHhCCChHHHHHhhhccCC-CCCCChhhh-----
Q 001156 868 WSKIDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTGD-KENLGKCEQ----- 941 (1135)
Q Consensus 868 w~kLD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~~Pt~eE~~~Lk~~~g~-~~~L~~~Eq----- 941 (1135)
...||.+|+|||+|+|++|+++.++|+++|+.||...|+.+.|+.|++++||.||++.|++|.|+ .+.|+.+||
T Consensus 74 v~ild~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l 153 (432)
T smart00498 74 FKILDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLI 153 (432)
T ss_pred eEeechhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999987 689999998
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhh
Q 001156 942 ----------------------ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKL 999 (1135)
Q Consensus 942 ----------------------v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL 999 (1135)
+.+|+..|..+..||++|++|..|+.||++||++|||||+|+.||+|+||+|++|.||
T Consensus 154 ~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL 233 (432)
T smart00498 154 SNIPYLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKL 233 (432)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCccchhhhHH------------------------HHhhhHHHHHHHHHHHHHH-------------------
Q 001156 1000 TDTRASNSKMTLMHYLCK------------------------IQLKSLAEEMQAIIKGLEK------------------- 1036 (1135)
Q Consensus 1000 ~dtKs~d~k~TLLhyLv~------------------------iqL~~L~~e~~~l~k~Lek------------------- 1036 (1135)
.+||++|+++||||||++ ++ +.|..+++.+.++++.
T Consensus 234 ~d~Ks~d~k~tLLhylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~ 312 (432)
T smart00498 234 SDVKSADNKTTLLHFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFI 312 (432)
T ss_pred HhhhccCCCccHHHHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHH
Confidence 999999999999999999 23 4455566666554432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 -TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEA 1115 (1135)
Q Consensus 1037 -~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea 1115 (1135)
.|..|+..|..+++.|...+.++++.|++++.||||+++..++++||++|.+|+..|++|++||.+++++|++|..+..
T Consensus 313 ~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~ 392 (432)
T smart00498 313 EVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLV 392 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999998899999999999999999999999998888776665554
No 4
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=1.5e-40 Score=387.40 Aligned_cols=224 Identities=41% Similarity=0.707 Sum_probs=203.8
Q ss_pred cccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHhCCChHHHHHhhhccCCCCCCChhhh---------
Q 001156 871 IDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTGDKENLGKCEQ--------- 941 (1135)
Q Consensus 871 LD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~~Pt~eE~~~Lk~~~g~~~~L~~~Eq--------- 941 (1135)
||.+|+||++|+|++++++.++|+++|..+|...|+.|.|+.|++++||.||++.|++|.++.+.|+.+|+
T Consensus 76 Ld~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip 155 (370)
T PF02181_consen 76 LDPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIP 155 (370)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTST
T ss_pred cchHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhcc
Q 001156 942 ------------------ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTR 1003 (1135)
Q Consensus 942 ------------------v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtK 1003 (1135)
+.++...|..+..||++|++|..|+.+|++||.+|||||+|+.+|+|.||+|++|.||.+||
T Consensus 156 ~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~K 235 (370)
T PF02181_consen 156 RLKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTK 235 (370)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcc
Confidence 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhhhHH------------------------HHhhhHHHHHHHHHHHHHH--------------------HHH
Q 001156 1004 ASNSKMTLMHYLCK------------------------IQLKSLAEEMQAIIKGLEK--------------------TLK 1039 (1135)
Q Consensus 1004 s~d~k~TLLhyLv~------------------------iqL~~L~~e~~~l~k~Lek--------------------~l~ 1039 (1135)
+.|+++||||||++ ++++++..+++++++++++ +|+
T Consensus 236 s~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~ 315 (370)
T PF02181_consen 236 SNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMK 315 (370)
T ss_dssp -STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHH
T ss_pred cccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHH
Confidence 99999999999999 3566667777777766554 699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 001156 1040 GFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFR 1094 (1135)
Q Consensus 1040 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fk 1094 (1135)
.|++.++.++..|++.+.++++.+++++.||||+++.+++++||++|.+|+++|+
T Consensus 316 ~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 316 EFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999996
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.9e-34 Score=334.13 Aligned_cols=244 Identities=30% Similarity=0.511 Sum_probs=216.5
Q ss_pred cccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHhCCChHHHHHhhhccCCC---CCCCh---------
Q 001156 871 IDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTGDK---ENLGK--------- 938 (1135)
Q Consensus 871 LD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~~Pt~eE~~~Lk~~~g~~---~~L~~--------- 938 (1135)
+|.+|+.|++|-++ +.+..++|+.+|..+|...|..+.|+.|.+++||++|...+++|..+. ++|.+
T Consensus 440 le~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~ls 518 (830)
T KOG1923|consen 440 LEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLS 518 (830)
T ss_pred HHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhh
Confidence 89999999999999 999999999999999999999999999999999999999999886332 22222
Q ss_pred -hhh-----------------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhh
Q 001156 939 -CEQ-----------------ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLT 1000 (1135)
Q Consensus 939 -~Eq-----------------v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~ 1000 (1135)
.|+ +.-|.+++..+..|+..+++|.+|+.+|++||++|||||.+ .||.++||+|.+|.-|.
T Consensus 519 kIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll 597 (830)
T KOG1923|consen 519 KIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLL 597 (830)
T ss_pred hhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHh
Confidence 222 55677889999999999999999999999999999999997 57999999999999999
Q ss_pred hccccCCCccchhhhHH------------------------HHhhhHHHHHHHHHHHHHH------------HHHHHHHH
Q 001156 1001 DTRASNSKMTLMHYLCK------------------------IQLKSLAEEMQAIIKGLEK------------TLKGFISV 1044 (1135)
Q Consensus 1001 dtKs~d~k~TLLhyLv~------------------------iqL~~L~~e~~~l~k~Lek------------~l~~Fl~~ 1044 (1135)
+||++|.++|||||++. ++|+....||.++.++.+. .|++|++.
T Consensus 598 ~tkStDr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~~~iL~~F~~n 677 (830)
T KOG1923|consen 598 DTKSTDRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGLDVILSEFLDN 677 (830)
T ss_pred hccCCccceeeeehhhHHHHHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhccchHHHHHHhc
Confidence 99999999999999998 3566666677777776543 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1045 AEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEAE 1116 (1135)
Q Consensus 1045 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~ 1116 (1135)
.+.+++.|++.++.+...|++++.||||.++..++..||..|..|+++|+++..||+.+.+.|++..++.++
T Consensus 678 ~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~A~qe~~~~ 749 (830)
T KOG1923|consen 678 NKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEAALQEARAE 749 (830)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhc
Confidence 999999999999999999999999999999998999999999999999999999999888777766555443
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=3.7e-30 Score=286.97 Aligned_cols=243 Identities=25% Similarity=0.414 Sum_probs=208.8
Q ss_pred cccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHhCCChHHHHHhhhcc--CCCCCCChhhh-------
Q 001156 871 IDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYT--GDKENLGKCEQ------- 941 (1135)
Q Consensus 871 LD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~~Pt~eE~~~Lk~~~--g~~~~L~~~Eq------- 941 (1135)
||.||.|.|.|.|.+|. +..-|..+|+++|+.+|+.|.||.|++++||+||++.++... ...-.||.+||
T Consensus 351 L~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSs 429 (817)
T KOG1925|consen 351 LDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSS 429 (817)
T ss_pred cCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhh
Confidence 99999999999999997 778899999999999999999999999999999999998643 44567999999
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhh
Q 001156 942 --------------------ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTD 1001 (1135)
Q Consensus 942 --------------------v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d 1001 (1135)
-.++.+-|-.+..+++++.++..|+.+|.++|+||||||+. +++||.|++|.|..+
T Consensus 430 I~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsE 505 (817)
T KOG1925|consen 430 IGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSE 505 (817)
T ss_pred hHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchh
Confidence 23456677789999999999999999999999999999984 678999999999999
Q ss_pred ccccCCCccchhhhHH------------------------HHhhhHHHHHHHHHHHHHH-------------------HH
Q 001156 1002 TRASNSKMTLMHYLCK------------------------IQLKSLAEEMQAIIKGLEK-------------------TL 1038 (1135)
Q Consensus 1002 tKs~d~k~TLLhyLv~------------------------iqL~~L~~e~~~l~k~Lek-------------------~l 1038 (1135)
+|+...|.||+|+||. +|+++|.+.+..+++.|+. .|
T Consensus 506 VKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~ 585 (817)
T KOG1925|consen 506 VKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARL 585 (817)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHH
Confidence 9999999999999999 4556666666655554432 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1039 KGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPA---RCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEA 1115 (1135)
Q Consensus 1039 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~---~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea 1115 (1135)
.+|++++.+++..|+..|..+.+.|..++.|||..+. ...+.+||.++.+|.-+|+..++.+.+|+ +|+ ...+
T Consensus 586 ~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~---qk~-A~~R 661 (817)
T KOG1925|consen 586 THFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQQQ---QKQ-ATYR 661 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHH---HHH-HHHH
Confidence 8999999999999999999999999999999998765 35789999999999999999999877654 222 2334
Q ss_pred HHHHhcc
Q 001156 1116 EMEKAKG 1122 (1135)
Q Consensus 1116 ~~~~~~~ 1122 (1135)
|+.|+|+
T Consensus 662 ERNKTRG 668 (817)
T KOG1925|consen 662 ERNKTRG 668 (817)
T ss_pred hhccccc
Confidence 6666666
No 7
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=4.7e-29 Score=318.48 Aligned_cols=238 Identities=46% Similarity=0.661 Sum_probs=215.7
Q ss_pred ccccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHhCCChHHHHHhhhccCCCCCCChhhh--------
Q 001156 870 KIDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKFCPTKEEMELLKNYTGDKENLGKCEQ-------- 941 (1135)
Q Consensus 870 kLD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~~Pt~eE~~~Lk~~~g~~~~L~~~Eq-------- 941 (1135)
.+|.++++|++|+|++|++..+++.++++.+|+.+|..++|+.|.+++||++|...++.|.++...|+.+|+
T Consensus 465 v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ 544 (833)
T KOG1922|consen 465 VLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSG 544 (833)
T ss_pred ccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhc
Confidence 389999999999999999999999999999999999999999999999999999999999988888888776
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhh
Q 001156 942 --------------------ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTD 1001 (1135)
Q Consensus 942 --------------------v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d 1001 (1135)
+..+...+..+..+|++++++.+|.+++++||..||+||.|+.+|+|+||+|++|.||.|
T Consensus 545 ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d 624 (833)
T KOG1922|consen 545 IPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSD 624 (833)
T ss_pred chHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhh
Confidence 667888999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccchhhhHH----------------------------------------HHhhhHHHHHHHHHHHHHH-----
Q 001156 1002 TRASNSKMTLMHYLCK----------------------------------------IQLKSLAEEMQAIIKGLEK----- 1036 (1135)
Q Consensus 1002 tKs~d~k~TLLhyLv~----------------------------------------iqL~~L~~e~~~l~k~Lek----- 1036 (1135)
+|+.++++++||+++. ++++.+.+++.++.+++++
T Consensus 625 ~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l 704 (833)
T KOG1922|consen 625 VKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKREL 704 (833)
T ss_pred hhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999766666554 3455666666666555432
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHHHH
Q 001156 1037 -----------------TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDP-ARCPFEQVTATLLNFVRLFRKAHE 1098 (1135)
Q Consensus 1037 -----------------~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~-~~~~~eeff~~l~~Fi~~fkka~~ 1098 (1135)
.|..|++.|+.++..|...+.++...++++++|||++. ....+++||.++.+|+..|.++++
T Consensus 705 ~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~~~~ 784 (833)
T KOG1922|consen 705 PTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDKAHE 784 (833)
T ss_pred hhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998 577899999999999999999999
Q ss_pred HHHHHHHHH
Q 001156 1099 ENVKQSELE 1107 (1135)
Q Consensus 1099 en~k~~e~E 1107 (1135)
||.+.+++|
T Consensus 785 e~~~~~~k~ 793 (833)
T KOG1922|consen 785 ENKKAEEKE 793 (833)
T ss_pred HHHHHHHHh
Confidence 999877554
No 8
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.88 E-value=1.2e-22 Score=203.50 Aligned_cols=121 Identities=34% Similarity=0.598 Sum_probs=97.2
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCe
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDV 276 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV 276 (1135)
|+.++|+|++|+|++||+ +.++|||||++||+++ +.||++...+.....|.+.. ..|.++.++.|+|||
T Consensus 1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---------~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV 70 (134)
T PF10409_consen 1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---------KKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDV 70 (134)
T ss_dssp -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---------EEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEE
T ss_pred CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCC---------ccEEEeccceecccccccee-EEEEeCCCCeEeCCE
Confidence 367899999999999999 6889999999999986 56766666655666664444 679999999999999
Q ss_pred EEEEEeccccccccceEEEEEecccccc-------cC--CCCCCCCCccccccccCCCC--CCCCCCcccceEEEccc
Q 001156 277 VIECVHLEDDLVREEMMFRVMFHTAFVL-------FS--DADAVVPNLTTVAAVEDGVE--TESASPEEFFEVEEIFS 343 (1135)
Q Consensus 277 ~i~~~h~~~~~~~~~~mFr~~FnT~Fi~-------f~--elD~~~~~~~~~~~~~~~~~--~~~p~~~~~~~ve~~Fs 343 (1135)
+|+|||.+.....+++||||||||+||. |. |||+++ +| .+|+. +++||++|+
T Consensus 71 ~i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~------------kdk~k~f~~---~f~Vel~f~ 133 (134)
T PF10409_consen 71 LIKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAH------------KDKHKRFPP---DFKVELVFS 133 (134)
T ss_dssp EEEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCC------------CGCTCCS-T---T-EEEEEEE
T ss_pred EEEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcc------------cCcccccCC---CeEEEEEEe
Confidence 9999999876667789999999999986 32 999988 55 89964 779999997
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.57 E-value=4.9e-14 Score=146.37 Aligned_cols=152 Identities=14% Similarity=0.199 Sum_probs=112.8
Q ss_pred CCCCeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCC
Q 001156 12 PPDRLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPRE 91 (1135)
Q Consensus 12 ~~lDLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~ 91 (1135)
.|-.++||+.|+|+| .-|.+.. +.+-++.|+.. += ..|+|+|++.|+.. .+...+..+.+||+.
T Consensus 7 ~~~~~~~~~~r~~~~--~~P~~~~--------~~~~l~~L~~~-gI--~~Iv~l~~~~~~~~---~~~~~gi~~~~~p~~ 70 (166)
T PTZ00242 7 KDRQIEYVLFKFLIL--DAPSPSN--------LPLYIKELQRY-NV--THLVRVCGPTYDAE---LLEKNGIEVHDWPFD 70 (166)
T ss_pred CCcceeeeceEEEEe--cCCCccc--------HHHHHHHHHhC-CC--eEEEecCCCCCCHH---HHHHCCCEEEecCCC
Confidence 456799999999999 5666532 22224556544 32 67999998776532 244567889999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhh-cCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhcc
Q 001156 92 YEHCPLLPLEMIHHFLRSSESWLSL-EGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHL 170 (1135)
Q Consensus 92 ~~~~p~p~L~~l~~~c~~~~~wL~~-~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~ 170 (1135)
|++.| +.+.+..|++-++.++.. ...++.|+|||.+|. ||||+++||||+..+.+ +.++|+.++.++ +.+
T Consensus 71 D~~~P--~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGi-gRSgt~~a~yL~~~~~~-s~~eAi~~vr~~-R~~---- 141 (166)
T PTZ00242 71 DGAPP--PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGL-GRAPILVALALVEYGGM-EPLDAVGFVREK-RKG---- 141 (166)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCC-CHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-CCC----
Confidence 76655 888888888888888754 145679999999999 69999999999998865 688899988332 221
Q ss_pred CCCCCCCchHHHHHHHHHHhcc
Q 001156 171 LSPLNPQPSQLRYLQYISRRNL 192 (1135)
Q Consensus 171 ~~~~~~~PSQ~RYv~Yf~~ll~ 192 (1135)
.+ .+-|++||+.|.+.+.
T Consensus 142 --~i--~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 142 --AI--NQTQLQFLKKYKPRKK 159 (166)
T ss_pred --Cc--hHHHHHHHHHHHHHhc
Confidence 12 4789999999987543
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.38 E-value=4.8e-12 Score=136.09 Aligned_cols=146 Identities=8% Similarity=0.152 Sum_probs=104.8
Q ss_pred CeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCC
Q 001156 15 RLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEH 94 (1135)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~ 94 (1135)
.+.|-.=|+|+| .-|... . +..-+..|+ +|+= ..|..+|++.|+.. .+...+..+.++||.|++
T Consensus 86 ~ie~~~~rfLi~--~~P~~~----~----~~~yl~eLk-~~gV--~~lVrlcE~~Yd~~---~~~~~GI~~~~lpipDg~ 149 (241)
T PTZ00393 86 KIEHGKIKILIL--DAPTND----L----LPLYIKEMK-NYNV--TDLVRTCERTYNDG---EITSAGINVHELIFPDGD 149 (241)
T ss_pred hhccCceeEEEe--CCCCHH----H----HHHHHHHHH-HcCC--CEEEECCCCCCCHH---HHHHcCCeEEEeecCCCC
Confidence 344444589999 456542 1 122224455 3443 56888999887522 244568899999999877
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhccCCCC
Q 001156 95 CPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHLLSPL 174 (1135)
Q Consensus 95 ~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 174 (1135)
.| +++.|..|+..++..+.. + ..|+|||++|. ||||+|+||||+..++ ++++|++++. ..+.+ .+
T Consensus 150 aP--s~~~i~~~l~~i~~~l~~-g--~~VaVHC~AGl-GRTGtl~AayLI~~Gm--speeAI~~VR-~~RPg------AI 214 (241)
T PTZ00393 150 AP--TVDIVSNWLTIVNNVIKN-N--RAVAVHCVAGL-GRAPVLASIVLIEFGM--DPIDAIVFIR-DRRKG------AI 214 (241)
T ss_pred CC--CHHHHHHHHHHHHHHHhc-C--CeEEEECCCCC-CHHHHHHHHHHHHcCC--CHHHHHHHHH-HHCCC------CC
Confidence 65 899999999999888765 4 37999999999 6999999999998663 7899999883 22222 12
Q ss_pred CCCchHHHHHHHHHHhccC
Q 001156 175 NPQPSQLRYLQYISRRNLG 193 (1135)
Q Consensus 175 ~~~PSQ~RYv~Yf~~ll~~ 193 (1135)
...|++||+-|.....+
T Consensus 215 --n~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 215 --NKRQLQFLKAYKKKKKK 231 (241)
T ss_pred --CHHHHHHHHHHHHhccc
Confidence 46899999999876543
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=5.8e-10 Score=132.22 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1084 ATLLNFVRLFRKAHEENVKQSELERKKAEKEAEM 1117 (1135)
Q Consensus 1084 ~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~ 1117 (1135)
.-|+.-++.|+.|+.+..+ |.++||++.|.++
T Consensus 976 EEFFaDi~tFrnaf~ea~~--en~krRee~Ek~r 1007 (1102)
T KOG1924|consen 976 EEFFADIRTFRNAFLEAVA--ENEKRREEEEKER 1007 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3455557778888887764 5555555444433
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.25 E-value=7.3e-11 Score=122.74 Aligned_cols=157 Identities=10% Similarity=0.085 Sum_probs=109.9
Q ss_pred CCCCCeeeecCc-eEEeecC-CCCCCCchhhhc-ccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeec
Q 001156 11 KPPDRLLEISER-VYVFDCC-FSTDVLEEDDYK-SYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMD 87 (1135)
Q Consensus 11 ~~~lDLtyIT~R-Iiam~~~-fP~~~~~e~~yr-n~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~ 87 (1135)
=...|.++|++. +|+++.. +.+-|+ |..|- +-.+.+..+|+ |.+- =.|+-|.++-|+.. .+..-+..-.+
T Consensus 48 ve~gdfnwI~p~~~i~f~~p~~~s~gi-~~~f~~~~~~~~~~~~~--~~~v-~s~vrln~~~yd~~---~f~~~Gi~h~~ 120 (225)
T KOG1720|consen 48 VENGDFNWIIPDRFIAFAGPHLKSRGI-ESGFPLHLPQPYIQYFK--NNNV-TSIVRLNKRLYDAK---RFTDAGIDHHD 120 (225)
T ss_pred cCCCCcceeccchhhhhcCccccccch-hhcccccCChhHHHHhh--hccc-ceEEEcCCCCCChH---HhcccCceeee
Confidence 356999999987 6666211 112244 55666 44455666666 2221 35777788777733 23344555667
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhh
Q 001156 88 YPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPREL 167 (1135)
Q Consensus 88 ~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~ 167 (1135)
++|.|-.+| .++.++.|++.+++-++- ..++|||++|- ||||+||||||||.. .-++.||++.+ |.++.+
T Consensus 121 l~f~Dg~tP--~~~~v~~fv~i~e~~~~~----g~iaVHCkaGl-GRTG~liAc~lmy~~-g~ta~eaI~~l-R~~RpG- 190 (225)
T KOG1720|consen 121 LFFADGSTP--TDAIVKEFVKIVENAEKG----GKIAVHCKAGL-GRTGTLIACYLMYEY-GMTAGEAIAWL-RICRPG- 190 (225)
T ss_pred eecCCCCCC--CHHHHHHHHHHHHHHHhc----CeEEEEeccCC-CchhHHHHHHHHHHh-CCCHHHHHHHH-HhcCCc-
Confidence 788776665 999999999999998763 46999999999 699999999999994 45677799976 333322
Q ss_pred hccCCCCCCCchHHHHHHHHHHh
Q 001156 168 LHLLSPLNPQPSQLRYLQYISRR 190 (1135)
Q Consensus 168 ~~~~~~~~~~PSQ~RYv~Yf~~l 190 (1135)
-|-.|-|.-|+.-|..+
T Consensus 191 ------~V~gpqQ~~l~~~q~~~ 207 (225)
T KOG1720|consen 191 ------AVIGPQQHKLLHKQRDL 207 (225)
T ss_pred ------cccCHHHHHHHHHHHHH
Confidence 23589999999888773
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.00 E-value=1.1e-09 Score=111.71 Aligned_cols=123 Identities=14% Similarity=0.164 Sum_probs=76.7
Q ss_pred CceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCC----cc-ccccccccccCCeeecCCCCCCCC
Q 001156 21 ERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGE----KR-SQISDILSQYDMTVMDYPREYEHC 95 (1135)
Q Consensus 21 ~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~----~~-s~~~~~~~~f~~~V~~~p~~~~~~ 95 (1135)
.+|... ..|.-.+ .. +|.+++.=+..|+.. +- =.|+-|+++. |+ .++.+.+...++.+.+||+.|.+.
T Consensus 41 ~~Lglt--~~PG~k~-~d-~~RdL~~DL~~Lk~~-G~--~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~a 113 (168)
T PF05706_consen 41 GFLGLT--FLPGCKF-KD-WRRDLQADLERLKDW-GA--QDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSA 113 (168)
T ss_dssp SEEEEE--S-TT-EE-TT-EEB-HHHHHHHHHHT-T----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS-
T ss_pred ceeeee--cCCCccc-cc-ccchHHHHHHHHHHC-CC--CEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCC
Confidence 444443 6776544 33 454555445666643 33 3466677754 33 445556677899999999999888
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHH
Q 001156 96 PLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTL 156 (1135)
Q Consensus 96 p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al 156 (1135)
| .++.++.++..+..+|.. +. .|+|||++|. ||||+|+||+|+..+...++++|+
T Consensus 114 P--d~~~~~~i~~eL~~~L~~-g~--~V~vHC~GGl-GRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 114 P--DFAAAWQILEELAARLEN-GR--KVLVHCRGGL-GRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp ----HHHHHHHHHHHHHHHHT-T----EEEE-SSSS-SHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHc-CC--EEEEECCCCC-CHHHHHHHHHHHHHcCCCChhhcC
Confidence 7 899999999999999998 44 6889998777 799999999999999988998886
No 14
>PHA03247 large tegument protein UL36; Provisional
Probab=98.99 E-value=3.4e-07 Score=120.64 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 001156 946 RKNLNTVNSACEEVRN 961 (1135)
Q Consensus 946 ~~~L~~l~~a~~el~~ 961 (1135)
...|..|.+||+.|+.
T Consensus 3108 ~salAlLi~ACr~i~r 3123 (3151)
T PHA03247 3108 RSALAVLIEACRRIRR 3123 (3151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467778888887643
No 15
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=98.92 E-value=1.8e-08 Score=101.38 Aligned_cols=136 Identities=17% Similarity=0.143 Sum_probs=90.8
Q ss_pred eeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCC
Q 001156 17 LEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCP 96 (1135)
Q Consensus 17 tyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p 96 (1135)
+.|+++|++- ++|+..- ..+|.. ++= -.|+||+++.+.. ...+.+..++|+.|.+..
T Consensus 2 ~~I~~~l~~G--~~~~~~~------------~~~l~~-~gi--~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~ 58 (138)
T smart00195 2 SEILPHLYLG--SYSSALN------------LALLKK-LGI--THVINVTNEVPNL------NKKGFTYLGVPILDNTET 58 (138)
T ss_pred cEEeCCeEEC--ChhHcCC------------HHHHHH-cCC--CEEEEccCCCCCC------CCCCCEEEEEECCCCCCC
Confidence 5689999887 6775321 355554 333 5799999876421 134567788888774332
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhccCCCCCC
Q 001156 97 LLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHLLSPLNP 176 (1135)
Q Consensus 97 ~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 176 (1135)
...+.+..+++-|+..+.. +.-|+|||.+|. +|||+++||||++...+ +.++|++++.+ .+.. ..+
T Consensus 59 -~~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~-~RS~~v~~~yl~~~~~~-~~~~A~~~v~~-~R~~-------~~p 124 (138)
T smart00195 59 -KISPYFPEAVEFIEDAEKK---GGKVLVHCQAGV-SRSATLIIAYLMKYRNL-SLNDAYDFVKD-RRPI-------ISP 124 (138)
T ss_pred -ChHHHHHHHHHHHHHHhcC---CCeEEEECCCCC-chHHHHHHHHHHHHhCC-CHHHHHHHHHH-HCCc-------cCC
Confidence 2334555555555555443 347999999999 69999999999998776 57889998832 2211 125
Q ss_pred CchHHHHHHHHHH
Q 001156 177 QPSQLRYLQYISR 189 (1135)
Q Consensus 177 ~PSQ~RYv~Yf~~ 189 (1135)
.+.|++-|.-|++
T Consensus 125 ~~~~~~qL~~~e~ 137 (138)
T smart00195 125 NFGFLRQLIEYER 137 (138)
T ss_pred CHhHHHHHHHHhh
Confidence 6788888887764
No 16
>PHA03247 large tegument protein UL36; Provisional
Probab=98.87 E-value=1.6e-06 Score=114.63 Aligned_cols=7 Identities=57% Similarity=0.871 Sum_probs=3.3
Q ss_pred CceEEec
Q 001156 240 SKLLFST 246 (1135)
Q Consensus 240 ~~~v~ss 246 (1135)
...+|..
T Consensus 2162 ~G~LFa~ 2168 (3151)
T PHA03247 2162 TGLLFGT 2168 (3151)
T ss_pred CCeeEEe
Confidence 3455544
No 17
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.80 E-value=2.4e-08 Score=105.48 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=76.3
Q ss_pred ccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHH
Q 001156 80 QYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMV 159 (1135)
Q Consensus 80 ~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~ 159 (1135)
..+..+.++|+.|+..| .++.+-.+...|++-++. +. .|||||.+|. |||||++|||||+.+.+...++++.+.
T Consensus 70 ~~~~~~~~~~~~D~~~p--~~~~l~~~v~~i~~~~~~-g~--kVvVHC~~Gi-gRSgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 70 NDGIQVLHLPILDGTVP--DLEDLDKIVDFIEEALSK-GK--KVVVHCQGGI-GRSGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred cCCceeeeeeecCCCCC--cHHHHHHHHHHHHHHHhc-CC--eEEEEcCCCC-chHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566888888777665 889999999999998887 55 8999999888 799999999999998899999898865
Q ss_pred HHhcchhhhccCCCCCCCchHHHHHHHHHHh
Q 001156 160 YKQAPRELLHLLSPLNPQPSQLRYLQYISRR 190 (1135)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~~l 190 (1135)
++++.+ -+...-|.+|...+...
T Consensus 144 -~~~r~~-------~v~~~~q~~~~~e~~~~ 166 (180)
T COG2453 144 -RRRRPG-------AVVTEIQHLFELEQELF 166 (180)
T ss_pred -HhcCCc-------ccccHHHHHHHHHHHHH
Confidence 322221 13577888888777653
No 18
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.75 E-value=3.3e-08 Score=98.60 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=82.1
Q ss_pred HHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Q 001156 48 VAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 127 (1135)
Q Consensus 48 ~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHC 127 (1135)
..+|... += -.|.|++.+.....+ ....+...+.+|..|.++ .+..+.+..+++-|+.+... +..|+|||
T Consensus 11 ~~~l~~~-~I--~~Vin~~~~~~~~~~---~~~~~~~~~~i~~~D~~~-~~~~~~~~~~~~~i~~~~~~---~~~VlVHC 80 (133)
T PF00782_consen 11 IAFLKNL-GI--THVINLQEECPNPYF---YKPEGIEYLRIPIDDDPE-EPILEHLDQAVEFIENAISE---GGKVLVHC 80 (133)
T ss_dssp HHHHHHT-TE--EEEEECSSSSSTSHH---HTTTTSEEEEEEEESSTT-SHGGGGHHHHHHHHHHHHHT---TSEEEEEE
T ss_pred HHHHHHC-CC--CEEEEccCCCcCchh---cccCCCEEEEEEecCCCC-cchHHHHHHHHHhhhhhhcc---cceeEEEe
Confidence 4455544 22 368899997532111 123445566666665333 23567777788888888655 34699999
Q ss_pred cCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhccCCCCCCCchHHHHHHHHHH
Q 001156 128 ERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISR 189 (1135)
Q Consensus 128 k~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~~ 189 (1135)
.+|. +|+|+++||||++.+.+ +.++|++++..+++ . .+..+.|+++|.-|++
T Consensus 81 ~~G~-~RS~~v~~ayLm~~~~~-~~~~A~~~v~~~rp-~-------~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 81 KAGL-SRSGAVAAAYLMKKNGM-SLEEAIEYVRSRRP-Q-------INPNPSFIRQLYEYEK 132 (133)
T ss_dssp SSSS-SHHHHHHHHHHHHHHTS-SHHHHHHHHHHHST-T-------STHHHHHHHHHHHHHH
T ss_pred CCCc-ccchHHHHHHHHHHcCC-CHHHHHHHHHHHCC-C-------CCCCHHHHHHHHHhhc
Confidence 9999 69999999999998776 78889998843322 1 1245679999988764
No 19
>PRK12361 hypothetical protein; Provisional
Probab=98.69 E-value=1.9e-07 Score=115.19 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=100.7
Q ss_pred CeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCC
Q 001156 15 RLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEH 94 (1135)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~ 94 (1135)
....|+++|+.- ++++..- ..+|+ +++- =.|+||++|... ..+....-+....++|..|+.
T Consensus 94 ~~~~I~~~l~lG--~~~~a~d------------~~~L~-~~gI--~~Vldlt~E~~~--~~~~~~~~~i~yl~iPi~D~~ 154 (547)
T PRK12361 94 AIQKIDENLYLG--CRLFPAD------------LEKLK-SNKI--TAILDVTAEFDG--LDWSLTEEDIDYLNIPILDHS 154 (547)
T ss_pred cceEEcCcEEEC--CCCCccc------------HHHHH-HcCC--CEEEEccccccc--ccccccccCceEEEeecCCCC
Confidence 568899999997 6665321 34565 4554 357799876321 000011123456667776654
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhccCCCC
Q 001156 95 CPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHLLSPL 174 (1135)
Q Consensus 95 ~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 174 (1135)
. |.++.+...++.|++.+++ +. -|+|||++|. +|++++++||||+.+...+.++|++++.+ ++.. .
T Consensus 155 ~--p~~~~l~~a~~~i~~~~~~-~~--~VlVHC~~G~-sRSa~vv~ayLm~~~~~~~~~eA~~~vr~-~Rp~-------v 220 (547)
T PRK12361 155 V--PTLAQLNQAINWIHRQVRA-NK--SVVVHCALGR-GRSVLVLAAYLLCKDPDLTVEEVLQQIKQ-IRKT-------A 220 (547)
T ss_pred C--CcHHHHHHHHHHHHHHHHC-CC--eEEEECCCCC-CcHHHHHHHHHHHhccCCCHHHHHHHHHH-HCCC-------C
Confidence 4 4889999999999998876 44 4999999999 69999999999998877789999998833 2222 1
Q ss_pred CCCchHHHHHHHHHHh
Q 001156 175 NPQPSQLRYLQYISRR 190 (1135)
Q Consensus 175 ~~~PSQ~RYv~Yf~~l 190 (1135)
++.+.|+|+++.|.+.
T Consensus 221 ~~n~~q~~~l~~~~~~ 236 (547)
T PRK12361 221 RLNKRQLRALEKMLEQ 236 (547)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 3578999999988763
No 20
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.60 E-value=5.1e-07 Score=90.50 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=79.9
Q ss_pred eeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCC
Q 001156 16 LLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHC 95 (1135)
Q Consensus 16 LtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~ 95 (1135)
++.|+++|++- ++|+..- ..+|.. ++- -.|+||+.+.+. .....-+..+.+||+.|.+.
T Consensus 2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~-~gi--~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~ 60 (139)
T cd00127 2 LSEITPGLYLG--SYPAASD------------KELLKK-LGI--THVLNVAKEVPN----ENLFLSDFNYLYVPILDLPS 60 (139)
T ss_pred cCEEcCCeEEC--ChhHhcC------------HHHHHH-cCC--CEEEEcccCCCC----cccCCCCceEEEEEceeCCC
Confidence 67899999986 6665421 345543 443 579999988653 11223455677888766542
Q ss_pred CCCCH-HHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHH
Q 001156 96 PLLPL-EMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVY 160 (1135)
Q Consensus 96 p~p~L-~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~ 160 (1135)
..+ ..+..+++-|+..+.. + .-|+|||.+|. +|+|+|+++||++.+.+ +.++|++++.
T Consensus 61 --~~~~~~~~~~~~~i~~~~~~-~--~~vlVHC~~G~-~Rs~~~~~~~l~~~~~~-~~~~a~~~vr 119 (139)
T cd00127 61 --QDISKYFDEAVDFIDDAREK-G--GKVLVHCLAGV-SRSATLVIAYLMKTLGL-SLREAYEFVK 119 (139)
T ss_pred --CChHHHHHHHHHHHHHHHhc-C--CcEEEECCCCC-chhHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 244 3455566666665554 3 36999999998 69999999999987755 7788999884
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.56 E-value=4e-07 Score=86.11 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccC-----CHHHHHHHHHHh
Q 001156 88 YPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYT-----GELKTLEMVYKQ 162 (1135)
Q Consensus 88 ~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~-----~~~~al~~~~~~ 162 (1135)
..|.+++.|. ..+.++.|++.+..|.+....++-|+|||.+|. ||||+++++||++.+... ...+++..+ |+
T Consensus 8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~-gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i-r~ 84 (105)
T smart00012 8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGV-GRTGTFVALDILLQQLESETGEVDIFQTVKEL-RK 84 (105)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-ChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH-Hh
Confidence 3456666552 338999999999999987223568999999998 799999999999987643 344565554 22
Q ss_pred cchhhhccCCCCCCCchHHHHHHHH
Q 001156 163 APRELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 163 ~~~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
.+.+. +..+.|.+|++..
T Consensus 85 ~r~~~-------~~~~~q~~~~~~~ 102 (105)
T smart00012 85 QRPGM-------VQTFEQYLFLYRA 102 (105)
T ss_pred hhhhh-------CCcHHHHHHHHHH
Confidence 22222 2577788877654
No 22
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.56 E-value=4e-07 Score=86.11 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccC-----CHHHHHHHHHHh
Q 001156 88 YPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYT-----GELKTLEMVYKQ 162 (1135)
Q Consensus 88 ~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~-----~~~~al~~~~~~ 162 (1135)
..|.+++.|. ..+.++.|++.+..|.+....++-|+|||.+|. ||||+++++||++.+... ...+++..+ |+
T Consensus 8 ~~Wpd~~~P~-~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~-gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i-r~ 84 (105)
T smart00404 8 TGWPDHGVPE-SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGV-GRTGTFVALDILLQQLESETGEVDIFQTVKEL-RK 84 (105)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-ChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH-Hh
Confidence 3456666552 338999999999999987223568999999998 799999999999987643 344565554 22
Q ss_pred cchhhhccCCCCCCCchHHHHHHHH
Q 001156 163 APRELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 163 ~~~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
.+.+. +..+.|.+|++..
T Consensus 85 ~r~~~-------~~~~~q~~~~~~~ 102 (105)
T smart00404 85 QRPGM-------VQTFEQYLFLYRA 102 (105)
T ss_pred hhhhh-------CCcHHHHHHHHHH
Confidence 22222 2577788877654
No 23
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.45 E-value=5.3e-07 Score=89.83 Aligned_cols=97 Identities=26% Similarity=0.397 Sum_probs=72.1
Q ss_pred cccCCeeecCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHH
Q 001156 79 SQYDMTVMDYP-REYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLE 157 (1135)
Q Consensus 79 ~~f~~~V~~~p-~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~ 157 (1135)
..+++-.+..| .++-|.| +++.|+.-++-|+.+.+. ++ -+-||||||+ +|++||++||||-.+-++. ++|.+
T Consensus 72 k~~giE~L~i~T~D~~~~P--s~~~i~~aVeFi~k~asL-Gk--tvYVHCKAGR-tRSaTvV~cYLmq~~~wtp-e~A~~ 144 (183)
T KOG1719|consen 72 KNYGIEFLVIPTRDYTGAP--SLENIQKAVEFIHKNASL-GK--TVYVHCKAGR-TRSATVVACYLMQHKNWTP-EAAVE 144 (183)
T ss_pred HhccceeEEeccccccCCC--CHHHHHHHHHHHHhcccc-CC--eEEEEecCCC-ccchhhhhhhhhhhcCCCH-HHHHH
Confidence 34444433333 2334555 999999999999999998 77 7999999999 6999999999999887754 55999
Q ss_pred HHHHhcchhhhccCCCCCCCchHHHHHHHHHHh
Q 001156 158 MVYKQAPRELLHLLSPLNPQPSQLRYLQYISRR 190 (1135)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~~l 190 (1135)
++.+-+ .+. -.-|+|.+-|.-|...
T Consensus 145 ~vr~iR-p~V-------lL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 145 HVRKIR-PRV-------LLRPAQWDVLKEFYKQ 169 (183)
T ss_pred HHHhcC-cce-------eecHHHHHHHHHHHHH
Confidence 874333 222 1589999988766553
No 24
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=2.5e-05 Score=90.41 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=11.5
Q ss_pred ccCCCCcCCCCcccccccccc
Q 001156 855 AMAPRRSSLKPLHWSKIDLRR 875 (1135)
Q Consensus 855 ~~~~~~~~Lk~~hw~kLD~kR 875 (1135)
++|+.+..||.+.-.+|..+|
T Consensus 500 aqIRqG~~Lk~v~~~~~~~~~ 520 (569)
T KOG3671|consen 500 AQIRQGGQLKKVDSRKLGARR 520 (569)
T ss_pred HHHHhcccccccchhhhcccc
Confidence 445555666666555544444
No 25
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=3e-05 Score=89.69 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=11.9
Q ss_pred ccCCCCcCCCCcccccc
Q 001156 855 AMAPRRSSLKPLHWSKI 871 (1135)
Q Consensus 855 ~~~~~~~~Lk~~hw~kL 871 (1135)
+.+..+..||.+..+-+
T Consensus 473 ~~i~~G~ql~~ve~t~~ 489 (569)
T KOG3671|consen 473 DAIAPGGQLKKVETTAL 489 (569)
T ss_pred cccCccccccceeeccC
Confidence 56677788888776653
No 26
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.16 E-value=6e-05 Score=73.61 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=97.7
Q ss_pred CCCCCCeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCC
Q 001156 10 RKPPDRLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYP 89 (1135)
Q Consensus 10 ~~~~lDLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p 89 (1135)
|-.+..++|=-=|.+..+ =|++.. ...+|+++ +||+- -.|.-.|+-.|+.. .+.+-+..|+|++
T Consensus 6 rPAPveIsy~~MrFLITh--nPtnaT----ln~fieEL-----kKygv--ttvVRVCe~TYdt~---~lek~GI~Vldw~ 69 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITH--NPTNAT----LNKFIEEL-----KKYGV--TTVVRVCEPTYDTT---PLEKEGITVLDWP 69 (173)
T ss_pred CCCCeeeeccceEEEEec--CCCchh----HHHHHHHH-----HhcCC--eEEEEecccccCCc---hhhhcCceEeecc
Confidence 556677788777877773 465432 22233332 25654 68889999999843 3567788999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhc
Q 001156 90 REYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLH 169 (1135)
Q Consensus 90 ~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~ 169 (1135)
|+| |.|+| -+.+-....-+..-+.+ ++.-.|+|||-+|- ||.-+++|--|+-+|+ .-++|++|+ |+.+++-
T Consensus 70 f~d-g~ppp-~qvv~~w~~l~~~~f~e-~p~~cvavhcvagl-grapvlvalalie~gm--kyedave~i-r~krrga-- 140 (173)
T KOG2836|consen 70 FDD-GAPPP-NQVVDDWLSLVKTKFRE-EPGCCVAVHCVAGL-GRAPVLVALALIEAGM--KYEDAVEMI-RQKRRGA-- 140 (173)
T ss_pred ccc-CCCCc-hHHHHHHHHHHHHHHhh-CCCCeEEEEeeccc-CcchHHHHHHHHHccc--cHHHHHHHH-HHHhhcc--
Confidence 976 56533 33333333333334456 89999999999999 6999999999998885 357799987 3323322
Q ss_pred cCCCCCCCchHHHHHHHHH
Q 001156 170 LLSPLNPQPSQLRYLQYIS 188 (1135)
Q Consensus 170 ~~~~~~~~PSQ~RYv~Yf~ 188 (1135)
+ .--|+-||.-|.
T Consensus 141 ----~--n~kql~~lekyr 153 (173)
T KOG2836|consen 141 ----I--NSKQLLYLEKYR 153 (173)
T ss_pred ----c--cHHHHHHHHHhC
Confidence 2 335777777653
No 27
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=97.93 E-value=3.8e-05 Score=84.18 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=63.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhc----cCCHHHHHHHHHHhcch
Q 001156 90 REYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQ----YTGELKTLEMVYKQAPR 165 (1135)
Q Consensus 90 ~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~----~~~~~~al~~~~~~~~~ 165 (1135)
|.+++.| ...+.++.|++.++.+... +..+-++|||.+|. ||+|+++|++++...+ .-+..+++..+ |+.+.
T Consensus 138 W~d~~~p-~~~~~~~~~~~~v~~~~~~-~~~~pivVHC~~G~-gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~i-R~~R~ 213 (231)
T cd00047 138 WPDHGVP-ESPDSLLDLLRKVRKSQQQ-PGSGPIVVHCSAGV-GRTGTFIAIDILLQRLEAEGVVDIFQTVKEL-RSQRP 213 (231)
T ss_pred CCCCCcc-CChHHHHHHHHHHHHHhcc-CCCCCeEEECCCCC-CccchHHHHHHHHHHHHhcCCCCHHHHHHHH-Hhccc
Confidence 6666665 3448899999999998764 45568999999998 7999999999877653 34556677766 22222
Q ss_pred hhhccCCCCCCCchHHHHHHHH
Q 001156 166 ELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 166 ~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
+ .+..+.|.+|++..
T Consensus 214 ~-------~v~~~~Qy~f~~~~ 228 (231)
T cd00047 214 G-------MVQTEEQYIFLYRA 228 (231)
T ss_pred c-------ccCCHHHHHHHHHH
Confidence 2 23689999999865
No 28
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.77 E-value=0.00013 Score=86.28 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=62.3
Q ss_pred CeeecC-CCCCCCCCCCCHHHHHHHHHHHHHHHhhcC-------CCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHH
Q 001156 83 MTVMDY-PREYEHCPLLPLEMIHHFLRSSESWLSLEG-------QQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELK 154 (1135)
Q Consensus 83 ~~V~~~-p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d-------~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~ 154 (1135)
.++++| -|+|||.|. .-+.|..|.+.++.|-.. + .+...||||.+|- ||||++|||+++..+-..+.++
T Consensus 423 V~QFHyTnWPDHGVPp-ST~~LleLvr~Vr~~~q~-~~~~~~~~nk~~PVVHCSAGV-GRTGTFIAi~llk~~~~~sle~ 499 (535)
T PRK15375 423 IPVLHVKNWPDHQPLP-STDQLEYLADRVKNSNQN-GAPGRSSSDKHLPMIHCLGGV-GRTGTMAAALVLKDNPHSNLEQ 499 (535)
T ss_pred EEEEEeCCCCCCCCCC-ChHHHHHHHHHHHHhhhc-ccccccccCCCCceEEcCCCC-chHHHHHHHHHHhccccCCHHH
Confidence 345555 477888763 346688888888877432 2 1124589999999 6999999999987555566777
Q ss_pred HHHHHHHhcchhhhccCCCCCCCchHHHHHHHHH
Q 001156 155 TLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYIS 188 (1135)
Q Consensus 155 al~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~ 188 (1135)
.+..+ |..+.+ . .|...-|.-.+.-+.
T Consensus 500 IV~dl-R~qRng--~----MVQt~eQy~~l~~~~ 526 (535)
T PRK15375 500 VRADF-RNSRNN--R----MLEDASQFVQLKAMQ 526 (535)
T ss_pred HHHHH-HhcCCc--c----ccccHHHHHHHHHHH
Confidence 77765 222211 1 235667766665554
No 29
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=97.65 E-value=0.00015 Score=81.01 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhc----cCCHHHHHHHHHHhcc
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQ----YTGELKTLEMVYKQAP 164 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~----~~~~~~al~~~~~~~~ 164 (1135)
.|.|++.| ...+.++.|++.++.+... ..+-++|||.+|. ||||+++|+++++..+ .....+++..+ |+.+
T Consensus 165 ~W~d~~~P-~~~~~~~~~i~~v~~~~~~--~~~pivVHC~~G~-gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~l-R~~R 239 (258)
T smart00194 165 NWPDHGVP-ESPKSILDLVRAVRKSQST--STGPIVVHCSAGV-GRTGTFIAIDILLQQLEAGKEVDIFEIVKEL-RSQR 239 (258)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHhhcc--CCCCEEEEeCCCC-CccchhhHHHHHHHHHHHcCCCCHHHHHHHH-Hhcc
Confidence 45566654 3567899999999998764 2457999999998 6999999999887643 23455677765 2222
Q ss_pred hhhhccCCCCCCCchHHHHHHHH
Q 001156 165 RELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 165 ~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
.+ .+..+-|.+|++..
T Consensus 240 ~~-------~v~~~~Qy~f~~~~ 255 (258)
T smart00194 240 PG-------MVQTEEQYIFLYRA 255 (258)
T ss_pred cc-------ccCCHHHHHHHHHH
Confidence 21 24688999998753
No 30
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.49 E-value=0.00027 Score=76.98 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccC----CHHHHHHHHHHhcc
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYT----GELKTLEMVYKQAP 164 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~----~~~~al~~~~~~~~ 164 (1135)
.|.+++.| ...+.++.|++.+..|. . +..+-++|||.+|. ||+|+++|+.+++..+.. +..+++..+ |+.+
T Consensus 142 ~W~~~~~P-~~~~~~~~~~~~v~~~~-~-~~~~pivVhc~~G~-gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~l-R~~R 216 (235)
T PF00102_consen 142 NWPDDGVP-PSPESFLDFIRKVNKSK-D-DPNGPIVVHCSDGV-GRSGTFCAIDILIEQLKKEGEVDVFEIVKKL-RQQR 216 (235)
T ss_dssp SSSSSSSG-SSSHHHHHHHHHHHHHH-S-TTSSEEEEESSSSS-HHHHHHHHHHHHHHHHHHHSEECHHHHHHHH-HTTS
T ss_pred eccccccc-cccchhhhhhhhccccc-c-CCccceEeeccccc-ccccccccchhhccccccccchhhHHHHHHH-HhhC
Confidence 56666655 56899999999999998 4 67789999999998 699999999999877643 444555544 2222
Q ss_pred hhhhccCCCCCCCchHHHHHHHH
Q 001156 165 RELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 165 ~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
.+ .+..+.|.+|++..
T Consensus 217 ~~-------~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 217 PG-------AIQSPEQYRFCYMA 232 (235)
T ss_dssp TT-------SSSSHHHHHHHHHH
T ss_pred CC-------ccCCHHHHHHHHHH
Confidence 22 24688898888765
No 31
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.00035 Score=87.62 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhc-cCCHHHHHHHHHHhcchhh
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQ-YTGELKTLEMVYKQAPREL 167 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~-~~~~~~al~~~~~~~~~~~ 167 (1135)
-|+||||| =....++.|+..|.+-=. +.+-=|||||.||. |||||+|++=++.+-+ ..-.-+-++++ |.||.-
T Consensus 1035 aWPDHg~P-~D~~~FL~FleevrsvR~--~t~pPilvHCSAGi-GRTGVlIl~e~~l~lle~Ne~vdi~div--r~mR~Q 1108 (1144)
T KOG0792|consen 1035 AWPDHGVP-DDPNDFLDFLEEVRSVRR--GTNPPILVHCSAGI-GRTGVLILMETALCLLEHNEPVDILDIV--RTMRDQ 1108 (1144)
T ss_pred ccccCCCC-CChHHHHHHHHHHHHHhc--cCCCCeEEEccCCC-CcceehHHHHHHHHHHhcCCCCCHHHHH--HHHHHH
Confidence 46799998 456777888888877422 22226999999999 6999999875444333 22233455554 112211
Q ss_pred hccCCCCCCCchHHHHHHH
Q 001156 168 LHLLSPLNPQPSQLRYLQY 186 (1135)
Q Consensus 168 ~~~~~~~~~~PSQ~RYv~Y 186 (1135)
.. ..+.+++|-+||+=
T Consensus 1109 R~---~mVQT~~QYkFVye 1124 (1144)
T KOG0792|consen 1109 RA---MMVQTLSQYKFVYE 1124 (1144)
T ss_pred Hh---hhccchHHhhHHHH
Confidence 11 23579999999854
No 32
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.34 E-value=0.00058 Score=71.23 Aligned_cols=143 Identities=12% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCCeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCC
Q 001156 13 PDRLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREY 92 (1135)
Q Consensus 13 ~lDLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~ 92 (1135)
++....|.+.||=- ++|.. .=..||++. += =.|.||+.+.+..++..-....+.+..+++...
T Consensus 4 P~nF~~V~~~vYRS--~~P~~------------~n~~fL~~L-~L--KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~ 66 (164)
T PF03162_consen 4 PLNFGMVEPGVYRS--AQPTP------------ANFPFLERL-GL--KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSS 66 (164)
T ss_dssp -TT-EEEETTEEEE--SS--H------------HHHHHHHHH-T---SEEEE--SS---HHHHHHHHHTT-EEEE-----
T ss_pred CccccCCCCCccCC--CCCCh------------hhHHHHHHC-CC--ceEEEecCCCCCHHHHHHHhhcCceEEEecccc
Confidence 44455555655554 55542 225688874 43 368899998644333322345677788876543
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhcc
Q 001156 93 EHC--PLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHL 170 (1135)
Q Consensus 93 ~~~--p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~ 170 (1135)
... -...-+.+..+++-| |+. .+.=|+|||+.|+ .|||+|||||=.+.+.. ...+++-|.+++..+
T Consensus 67 ~~~~~~~~~~~~v~~aL~~i---ld~--~n~PvLiHC~~G~-~rTG~vvg~lRk~Q~W~--~~~i~~Ey~~f~~~~---- 134 (164)
T PF03162_consen 67 SKDPWVPISEEQVAEALEII---LDP--RNYPVLIHCNHGK-DRTGLVVGCLRKLQGWS--LSSIFDEYRRFAGPK---- 134 (164)
T ss_dssp --GGG----HHHHHHHHHHH---H-G--GG-SEEEE-SSSS-SHHHHHHHHHHHHTTB---HHHHHHHHHHHHGGG----
T ss_pred ccCccccCCHHHHHHHHHHH---hCC--CCCCEEEEeCCCC-cchhhHHHHHHHHcCCC--HHHHHHHHHHhcCCC----
Confidence 222 113445555555433 222 2236999999999 69999999997655542 445666653333321
Q ss_pred CCCCCCCchHHHHHHHHHH
Q 001156 171 LSPLNPQPSQLRYLQYISR 189 (1135)
Q Consensus 171 ~~~~~~~PSQ~RYv~Yf~~ 189 (1135)
..-.-.+||+.|..
T Consensus 135 -----~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 135 -----IRYLDEQFIELFDV 148 (164)
T ss_dssp -------HHHHHHHHT---
T ss_pred -----CcHHHHHHHHhcCc
Confidence 23345778888875
No 33
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=96.87 E-value=0.0028 Score=73.65 Aligned_cols=130 Identities=11% Similarity=0.130 Sum_probs=85.5
Q ss_pred CCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCcccccccc-ccccCCeeec-CCCCCCCCCCCCHHHHHHH
Q 001156 29 CFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDI-LSQYDMTVMD-YPREYEHCPLLPLEMIHHF 106 (1135)
Q Consensus 29 ~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~-~~~f~~~V~~-~p~~~~~~p~p~L~~l~~~ 106 (1135)
+|..... ...+|-.-.++..+|.++ +|.|=-..+..+-.++++. --..++.++. --...+++ .|..+....|
T Consensus 36 ~~~~k~~-~~~~~f~~~dl~~~l~~~----~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~-vp~~~~v~~f 109 (393)
T KOG2386|consen 36 SYSTKTF-PGSQRFQPKDLFELLKEH----NYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGV-VPRTELVDKF 109 (393)
T ss_pred CCCcCCC-CCccccCHHHHHHHHHhc----CceEEEEEeccceeeeeccccccccceeEEEeccCCccc-CCCccchHHH
Confidence 6666555 444577788888888865 4665544443321111110 0011111111 11123343 4589999999
Q ss_pred HHHHHHHHh--hcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhh
Q 001156 107 LRSSESWLS--LEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPREL 167 (1135)
Q Consensus 107 c~~~~~wL~--~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~ 167 (1135)
.+.++.|.. . ++.-+|.|||-.|. -|||+|||+||+-.+.+ +..+|+.+|+..+..++
T Consensus 110 v~~v~~f~~~~~-~~~~LI~vhcthG~-NrtgyLI~~yL~~~~~~-s~~~aik~f~~~r~~gi 169 (393)
T KOG2386|consen 110 VKLVKGFVDDTK-LDDELIGVHCTHGL-NRTGYLICAYLADVGGY-SSSEAIKRFADARPPGI 169 (393)
T ss_pred HHHHHHHHhccc-CCCCEEEEeCCCcc-cccceeeeeeeeeccCc-cHHHHHHHHHHhCCCcc
Confidence 999999999 6 77889999999988 69999999999999985 55669999976554444
No 34
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=96.79 E-value=0.018 Score=66.16 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=20.9
Q ss_pred CCCcCCCCccccccccccccchhhhhccCC
Q 001156 858 PRRSSLKPLHWSKIDLRRANNTEIMLTKVK 887 (1135)
Q Consensus 858 ~~~~~Lk~~hw~kLD~kRaqNi~I~L~klk 887 (1135)
..+..|-+++-.+-|+-.|---||.|+|+.
T Consensus 444 ~~~~~lP~~sDaRsdLL~aIr~GiqLrKVe 473 (518)
T KOG1830|consen 444 RPKPVLPPISDARSDLLAAIRSGIQLRKVE 473 (518)
T ss_pred CCCCCCCCCCchHHHHHHHHHhcchhHHHH
Confidence 355566677776667777777788888873
No 35
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=96.72 E-value=0.0071 Score=69.68 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=54.9
Q ss_pred eeecC---CCCCCCCCCCCHHHHHHHHHHHHHHHhhcC----C----CcEEEEEecCCCcCchhhHHHHHHHHhhcc---
Q 001156 84 TVMDY---PREYEHCPLLPLEMIHHFLRSSESWLSLEG----Q----QNVLLMHCERGGWPVLAFMLAGLLLYRKQY--- 149 (1135)
Q Consensus 84 ~V~~~---p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d----~----~NVvviHCk~Gk~grtg~~iaa~L~y~~~~--- 149 (1135)
.|.+| -|+++|.| -....++.|++.+..|-+... + ..=+||||.+|- ||||+.+|.-++...+-
T Consensus 183 ~V~h~~y~~Wpd~~~P-~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGv-GRtGtfcaidi~i~~l~~~~ 260 (312)
T PHA02747 183 KISHFQCSEWFEDETP-SDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGV-GKTGIFCAVDICLNQLVKRK 260 (312)
T ss_pred EEEEEEECCCCCCCCC-CChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCC-cchhHHHHHHHHHHHHHhcC
Confidence 35555 56677765 245567778777766643201 0 125999999999 69999998876654432
Q ss_pred -CCHHHHHHHHHHhcchhhhccCCCCCCCchHHHHH
Q 001156 150 -TGELKTLEMVYKQAPRELLHLLSPLNPQPSQLRYL 184 (1135)
Q Consensus 150 -~~~~~al~~~~~~~~~~~~~~~~~~~~~PSQ~RYv 184 (1135)
-...+++..+ |+.+. +.+.+.-|-.|+
T Consensus 261 ~v~v~~~V~~l-R~qR~-------~~Vqt~~QY~F~ 288 (312)
T PHA02747 261 AICLAKTAEKI-REQRH-------AGIMNFDDYLFI 288 (312)
T ss_pred CCCHHHHHHHH-Hhccc-------cccCCHHHHHHH
Confidence 1223344433 22222 224688899988
No 36
>PLN02727 NAD kinase
Probab=96.53 E-value=0.0031 Score=79.50 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhCCCCcEEEEEeccCCcccccc-----ccccccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 001156 44 MGGIVAQLQDHFPDASFMVFNFREGEKRSQIS-----DILSQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEG 118 (1135)
Q Consensus 44 i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~-----~~~~~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d 118 (1135)
-+++. +|.. +|= =.|.||+++.-..+.+ ......+.+.+++|....+. |+.+.+..|.+.+++=+. .
T Consensus 271 pe~la-~LA~-~Gf--KTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~a--pt~EqVe~fa~~l~~slp--k 342 (986)
T PLN02727 271 EEGLK-WLLE-KGF--KTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTA--PSAEQVEKFASLVSDSSK--K 342 (986)
T ss_pred HHHHH-HHHH-CCC--eEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCC--CCHHHHHHHHHHHHhhcC--C
Confidence 34454 4543 342 5799998865322211 11223578888998755444 488999999887744222 3
Q ss_pred CCcEEEEEecCCCcCchhhHHHHHHHHhhc
Q 001156 119 QQNVLLMHCERGGWPVLAFMLAGLLLYRKQ 148 (1135)
Q Consensus 119 ~~NVvviHCk~Gk~grtg~~iaa~L~y~~~ 148 (1135)
=|+|||+.|. +|+|+|+||||.|.-.
T Consensus 343 ---PVLvHCKSGa-rRAGamvA~yl~~~~~ 368 (986)
T PLN02727 343 ---PIYLHSKEGV-WRTSAMVSRWKQYMTR 368 (986)
T ss_pred ---CEEEECCCCC-chHHHHHHHHHHHHcc
Confidence 4999999999 5999999999999764
No 37
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=96.48 E-value=0.025 Score=64.94 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=11.7
Q ss_pred cccCCCCcCCCCccccc
Q 001156 854 TAMAPRRSSLKPLHWSK 870 (1135)
Q Consensus 854 ~~~~~~~~~Lk~~hw~k 870 (1135)
..+++.+-.||++.-+.
T Consensus 460 L~aIr~GiqLrKVeeqr 476 (518)
T KOG1830|consen 460 LAAIRSGIQLRKVEEQR 476 (518)
T ss_pred HHHHHhcchhHHHHHHH
Confidence 56677788888865443
No 38
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.44 E-value=0.0038 Score=71.99 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH----HhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhc------c-CCHHHHHH
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESW----LSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQ------Y-TGELKTLE 157 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~w----L~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~------~-~~~~~al~ 157 (1135)
-|+|||+|.=| .-++.|+.+++.- ..+ + -|||||.||- ||||++|..=++.-.+ | -..+.++.
T Consensus 421 tWPDHGvP~dP-g~vLnFLe~V~~rq~~l~~A-g---pIvVHCSAGI-GrTGTfiViD~lld~I~~~Gldc~iDi~ktIq 494 (600)
T KOG0790|consen 421 TWPDHGVPSDP-GGVLNFLEEVNHRQESLMDA-G---PIVVHCSAGI-GRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQ 494 (600)
T ss_pred ecccCCCcCCc-cHHHHHHHHhhhhhcccccc-C---cEEEEccCCc-CCcceEEEhHHHHHHHHhcCCCCcccHHHHHH
Confidence 46799998544 4466778777653 333 3 5999999999 6999987655554332 1 23456777
Q ss_pred HHHHhcchhhhccCCCCCCCchHHHHHHHH
Q 001156 158 MVYKQAPRELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
|+..+ .+++|.+=-|-|||+|-
T Consensus 495 mVRsq--------RSGmVQTEaQYkFiY~A 516 (600)
T KOG0790|consen 495 MVRSQ--------RSGMVQTEAQYKFIYVA 516 (600)
T ss_pred HHHHH--------hcchhhhHHhHHHHHHH
Confidence 76211 14556788899999764
No 39
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.34 E-value=0.011 Score=67.63 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=55.6
Q ss_pred eeecC---CCCCCCCCCCCHHHHHHHHHHHHHHHh------hcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccC-C--
Q 001156 84 TVMDY---PREYEHCPLLPLEMIHHFLRSSESWLS------LEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYT-G-- 151 (1135)
Q Consensus 84 ~V~~~---p~~~~~~p~p~L~~l~~~c~~~~~wL~------~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~-~-- 151 (1135)
.|.+| -|+|+|.|. .-..++.|++.+..+.. ..+...=+||||.+|- ||||+.+|.-.+...+.. +
T Consensus 177 ~V~Hfqyt~WPd~gvP~-~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGv-GRTGtFcaiDi~l~~~~~~~~v 254 (298)
T PHA02740 177 KISHFQYTAWPADGFSH-DPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGI-SSSAVFCVFDICATEFDKTGML 254 (298)
T ss_pred EEEEEeecCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCC-chhHHHHHHHHHHHHHHhcCcc
Confidence 35554 566777763 45567777766665431 1022345899999999 699999987766554421 1
Q ss_pred -HHHHHHHHHHhcchhhhccCCCCCCCchHHHHHHHH
Q 001156 152 -ELKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 152 -~~~al~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
.-+++..+ |+.+ .+.+.++.|-.|++..
T Consensus 255 di~~~V~~l-R~qR-------~~~Vqt~~QY~F~y~~ 283 (298)
T PHA02740 255 SIANALKKV-RQKK-------YGCMNCLDDYVFCYHL 283 (298)
T ss_pred cHHHHHHHH-HhhC-------ccccCCHHHHHHHHHH
Confidence 11222222 2222 2235789999988663
No 40
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=96.30 E-value=0.017 Score=66.39 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcC---------CCcEEEEEecCCCcCchhhHHHHHHHHhhccC----CHHHH
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEG---------QQNVLLMHCERGGWPVLAFMLAGLLLYRKQYT----GELKT 155 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d---------~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~----~~~~a 155 (1135)
-|.|+|.| ..-..++.|++.+..|-...+ ...=+||||.+|- ||||+.+|...+...+-. ...++
T Consensus 190 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGv-GRTGtF~aid~~i~~~~~~~~v~v~~~ 267 (303)
T PHA02742 190 DWPHGGLP-RDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGL-DRAGAFCAIDICISKYNERAIIPLLSI 267 (303)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCC-chhHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 56777775 355678888888887642201 1235999999998 699999988766654321 11233
Q ss_pred HHHHHHhcchhhhccCCCCCCCchHHHHHHHH
Q 001156 156 LEMVYKQAPRELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
+..+ |+.+.+ .+.+.-|-.|++..
T Consensus 268 V~~l-R~qR~~-------~Vqt~~QY~F~y~~ 291 (303)
T PHA02742 268 VRDL-RKQRHN-------CLSLPQQYIFCYFI 291 (303)
T ss_pred HHHH-Hhhccc-------ccCCHHHHHHHHHH
Confidence 3333 222222 24678898887654
No 41
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.19 E-value=0.059 Score=61.33 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=43.7
Q ss_pred CcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHHHhcchhhhccCCCCCCCchHHHHHHHHHHhcc
Q 001156 120 QNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRNL 192 (1135)
Q Consensus 120 ~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~~ll~ 192 (1135)
.-.|+|||.+|. .|+++++.|||++...+. -++|++++..++. .+ .+...=+|-+.=|++.+.
T Consensus 155 ~~~vlVHC~~Gv-SRSat~viAYlM~~~~~~-l~~A~~~vk~~R~-~i-------~PN~gf~~QL~~~e~~l~ 217 (285)
T KOG1716|consen 155 GGKVLVHCQAGV-SRSATLVIAYLMKYEGLS-LEDAYELVKSRRP-II-------SPNFGFLRQLLEFEKRLS 217 (285)
T ss_pred CCeEEEEcCCcc-chhHHHHHHHHHHHcCCC-HHHHHHHHHHhCC-cc-------CCCHHHHHHHHHHHHhhc
Confidence 458999999999 699999999999987764 4569998743222 11 133444666666666544
No 42
>PHA02738 hypothetical protein; Provisional
Probab=96.12 E-value=0.021 Score=66.12 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=56.2
Q ss_pred eecC---CCCCCCCCCCCHHHHHHHHHHHHHHHhh-------cCC----CcEEEEEecCCCcCchhhHHHHHHHHhhccC
Q 001156 85 VMDY---PREYEHCPLLPLEMIHHFLRSSESWLSL-------EGQ----QNVLLMHCERGGWPVLAFMLAGLLLYRKQYT 150 (1135)
Q Consensus 85 V~~~---p~~~~~~p~p~L~~l~~~c~~~~~wL~~-------~d~----~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~ 150 (1135)
|.+| .|+++|.| ..-..++.|++.+..+-.. .+. ..=+||||.+|- ||||+.+|.-.+...+-.
T Consensus 179 V~h~~y~~Wpd~gvP-~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~Gi-GRtGtFcaidi~i~~~~~ 256 (320)
T PHA02738 179 VTHFNFTAWPDHDVP-KNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGL-GRTPCYCVVDISISRFDA 256 (320)
T ss_pred EEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCC-ChhhhhhHHHHHHHHHHh
Confidence 5553 56677765 2446678888887765321 011 135999999998 699999877766554422
Q ss_pred C----HHHHHHHHHHhcchhhhccCCCCCCCchHHHHHHHHH
Q 001156 151 G----ELKTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYIS 188 (1135)
Q Consensus 151 ~----~~~al~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~ 188 (1135)
+ .-+++..+ |+.+. +.+.++.|-.|++..-
T Consensus 257 ~~~vdv~~~V~~l-R~qR~-------~~vqt~~QY~F~y~~l 290 (320)
T PHA02738 257 CATVSIPSIVSSI-RNQRY-------YSLFIPFQYFFCYRAV 290 (320)
T ss_pred cCCcCHHHHHHHH-Hhhhh-------hccCCHHHHHHHHHHH
Confidence 1 22333333 22221 2346899999986643
No 43
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=96.11 E-value=0.022 Score=66.01 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhh------cCC--CcEEEEEecCCCcCchhhHHHHHHHHhhcc----CCHHHHH
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSL------EGQ--QNVLLMHCERGGWPVLAFMLAGLLLYRKQY----TGELKTL 156 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~------~d~--~NVvviHCk~Gk~grtg~~iaa~L~y~~~~----~~~~~al 156 (1135)
-|+|+|.| .....++.|++.+..|-.. +++ ..-+||||.+|- ||||+.+|.-.+...+- -...+++
T Consensus 209 ~Wpd~gvP-~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGv-GRTGtfcaid~~l~~l~~~~~vdv~~~V 286 (323)
T PHA02746 209 DWPDNGIP-TGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGI-GRAGTFCAIDNALEQLEKEKEVCLGEIV 286 (323)
T ss_pred CCCCCCcC-CCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCC-CcchhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56677765 3466788888888876421 011 246999999999 69999988765544331 1122333
Q ss_pred HHHHHhcchhhhccCCCCCCCchHHHHHHHH
Q 001156 157 EMVYKQAPRELLHLLSPLNPQPSQLRYLQYI 187 (1135)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf 187 (1135)
..+ |+.+ .+.+.+.-|..|++..
T Consensus 287 ~~l-R~qR-------~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 287 LKI-RKQR-------HSSVFLPEQYAFCYKA 309 (323)
T ss_pred HHH-Hhcc-------cccCCCHHHHHHHHHH
Confidence 332 2222 2234688899888755
No 44
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.98 E-value=0.05 Score=54.93 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=68.7
Q ss_pred CeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccc------cccccCCeeecC
Q 001156 15 RLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISD------ILSQYDMTVMDY 88 (1135)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~------~~~~f~~~V~~~ 88 (1135)
|+.-|++++++. +=+++ ++ ...|.+ .|= -.|+||+.......-.+ .....+..+.++
T Consensus 1 ~~~~i~~~~~~s--~qlt~-----------~d-~~~L~~-~Gi--ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~i 63 (135)
T TIGR01244 1 DIRKLTEHLYVS--PQLTK-----------AD-AAQAAQ-LGF--KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQ 63 (135)
T ss_pred CceEcCCCeeEc--CCCCH-----------HH-HHHHHH-CCC--cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 345678888776 33322 22 344554 343 57999985421111010 011246777777
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHH
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMV 159 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~ 159 (1135)
|....+ +.-+.+-.|.+-+++ . + .-|++||+.|+ |+|++.+-++.+.+ .+.+++++..
T Consensus 64 Pv~~~~---~~~~~v~~f~~~~~~---~--~-~pvL~HC~sG~--Rt~~l~al~~~~~g--~~~~~i~~~~ 121 (135)
T TIGR01244 64 PVTAGD---ITPDDVETFRAAIGA---A--E-GPVLAYCRSGT--RSSLLWGFRQAAEG--VPVEEIVRRA 121 (135)
T ss_pred ecCCCC---CCHHHHHHHHHHHHh---C--C-CCEEEEcCCCh--HHHHHHHHHHHHcC--CCHHHHHHHH
Confidence 754322 366777777766652 2 2 34999999998 99998877777766 3677788864
No 45
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.69 E-value=0.014 Score=60.67 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhc
Q 001156 108 RSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQ 148 (1135)
Q Consensus 108 ~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~ 148 (1135)
+.+-.+|.. .+ +-+++||.+|| -|||+++|-+|.-.+.
T Consensus 114 ~~~~~~l~~-~~-~p~l~HC~aGK-DRTG~~~alll~~lGV 151 (164)
T PF13350_consen 114 RKIFELLAD-AP-GPVLFHCTAGK-DRTGVVAALLLSLLGV 151 (164)
T ss_dssp HHHHHHHH--TT---EEEE-SSSS-SHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcc-CC-CcEEEECCCCC-ccHHHHHHHHHHHcCC
Confidence 344456665 45 79999999999 7999999888877775
No 46
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.56 E-value=0.035 Score=63.49 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=68.0
Q ss_pred ccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHH-HHHhhccCCHHHHHHH
Q 001156 80 QYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGL-LLYRKQYTGELKTLEM 158 (1135)
Q Consensus 80 ~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~-L~y~~~~~~~~~al~~ 158 (1135)
++-..+..+-|.|||.| -+.+.|..|.+....|+.. . .-.++|||.+|- |||||.||-- |++.-......+-...
T Consensus 250 r~ir~f~y~~wPd~gvp-~~~~sl~~f~~~~r~~~~~-~-~~p~iVhCSAGV-gRTGTFiald~LLqq~~~~~~vdi~~i 325 (374)
T KOG0791|consen 250 RKIRHFHYTAWPDFGVP-SSTESLLQFVRMVRQSLDT-S-KGPTIVHCSAGV-GRTGTFIALDRLLQQIDSEETVDIFGV 325 (374)
T ss_pred ceeEEEEEeeccccCCC-CCchhHHHHHHHHHhhccc-C-CCceeEEeeccc-ccccchHhHHHHHHHhcccccccHHHH
Confidence 34445566788899988 6788899999999999998 5 568999999999 6999999876 4443333322223333
Q ss_pred HHHhcchhhhccCCCCCCCchHHHHHHHHH-HhccCC
Q 001156 159 VYKQAPRELLHLLSPLNPQPSQLRYLQYIS-RRNLGS 194 (1135)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~PSQ~RYv~Yf~-~ll~~~ 194 (1135)
|...+..+ ..+ |++=-|.=||++.- ..+.|.
T Consensus 326 v~~lR~~R-~~m----Vqte~Qyvfl~~c~~~~l~~~ 357 (374)
T KOG0791|consen 326 VLELRSAR-MLM----VQTEDQYVFLHQCVLESLQGK 357 (374)
T ss_pred HHHhhhcc-ccc----cchHHHHHHHHHHHHHHHhCC
Confidence 32111111 112 34556666776654 345554
No 47
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=95.06 E-value=0.025 Score=58.09 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=35.2
Q ss_pred ccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHH
Q 001156 80 QYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLY 145 (1135)
Q Consensus 80 ~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y 145 (1135)
.++..-.+.|..||.+| .-+.+-.|+.-+.++ ..+-.+++||++|+ |||.+..+.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P--~~~~iD~fi~~v~~~----p~~~~l~fhC~~G~-GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAP--DPEDIDAFINFVKSL----PKDTWLHFHCQAGR-GRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS-----TT-EEEEE-SSSS-HHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCC--CHHHHHHHHHHHHhC----CCCCeEEEECCCCC-CHHHHHHHHHHHh
Confidence 45556667788888877 556666666544443 22458999999999 6988877776553
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.73 E-value=0.04 Score=60.45 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHhhcC-CCcEEEEEecCCCcCchhhHHHHHHHHh
Q 001156 99 PLEMIHHFLRSSESWLSLEG-QQNVLLMHCERGGWPVLAFMLAGLLLYR 146 (1135)
Q Consensus 99 ~L~~l~~~c~~~~~wL~~~d-~~NVvviHCk~Gk~grtg~~iaa~L~y~ 146 (1135)
.+..|+.+. ++.+.. . ..+.++|||-||- |||||.||--.+.+
T Consensus 200 ~i~sl~~~~---~sl~~s-p~~t~piiVHCSAGv-GRTGTFIalD~ll~ 243 (302)
T COG5599 200 DIRSLTEVI---HSLNDS-PVRTGPIIVHCSAGV-GRTGTFIALDILLR 243 (302)
T ss_pred CHHHHHHHH---HHhhcC-cCCCCCEEEEeccCC-CCcceeeeHHHHHh
Confidence 455555444 444433 3 4578999999999 69999998765554
No 49
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=93.26 E-value=0.26 Score=53.56 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=53.9
Q ss_pred HHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCC--CCCCHHHHHHHHHHHHHHHhhcCCCcEEEE
Q 001156 48 VAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHC--PLLPLEMIHHFLRSSESWLSLEGQQNVLLM 125 (1135)
Q Consensus 48 ~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~--p~p~L~~l~~~c~~~~~wL~~~d~~NVvvi 125 (1135)
..||+.-|- .-|.-||.|.|......-+...+.+.+++...-.-. -.|.-....+.++..-..|-- -.+.=++|
T Consensus 78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~~lld-~~N~P~Li 153 (249)
T KOG1572|consen 78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALKVLLD-KRNYPILI 153 (249)
T ss_pred hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHHHHhc-ccCCceEE
Confidence 567776553 445567777653221111233455555554322210 022333334444444444432 34447999
Q ss_pred EecCCCcCchhhHHHHHHHHhhcc
Q 001156 126 HCERGGWPVLAFMLAGLLLYRKQY 149 (1135)
Q Consensus 126 HCk~Gk~grtg~~iaa~L~y~~~~ 149 (1135)
||++|+ -|||++|+|+=-.++++
T Consensus 154 hc~rGk-hRtg~lVgclRklq~W~ 176 (249)
T KOG1572|consen 154 HCKRGK-HRTGCLVGCLRKLQNWS 176 (249)
T ss_pred ecCCCC-cchhhhHHHHHHHhccc
Confidence 999999 69999999997666654
No 50
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=92.77 E-value=0.19 Score=56.13 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=26.4
Q ss_pred cEEEEEecCCCcCchhhHHHHHHHHhhccCC
Q 001156 121 NVLLMHCERGGWPVLAFMLAGLLLYRKQYTG 151 (1135)
Q Consensus 121 NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~ 151 (1135)
-=|+|||++|+ -|||+++|+|+.+.+....
T Consensus 137 ~PvL~HC~~Gk-dRTGl~~al~r~~~~~~~~ 166 (249)
T COG2365 137 GPVLIHCTAGK-DRTGLVAALYRKLVGGSDE 166 (249)
T ss_pred CCEEEecCCCC-cchHHHHHHHHHHhCCchh
Confidence 46999999999 6999999999999887644
No 51
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.59 E-value=0.15 Score=65.64 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=47.7
Q ss_pred EEEEEeccCCccccccccccccCCeeecCCCCCCCCC-----CCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCc
Q 001156 60 FMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCP-----LLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPV 134 (1135)
Q Consensus 60 y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p-----~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~gr 134 (1135)
|+|-|..++.++ .|..| +++||| +..-..|..+.+....|=+. ..+.=++|||.+|. ||
T Consensus 968 f~i~n~~~~~~r------------~v~qf--q~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~-~~~~P~~Vhc~nG~-~r 1031 (1087)
T KOG4228|consen 968 FGVTNEREKQSR------------TVRQF--QFTGWPEYGKPPQSKGPISKIPSVASKWQQL-GADGPIIVHCLNGV-GR 1031 (1087)
T ss_pred heeeeccccCce------------EEEEE--EecCCcccCcCCCCcchhhhHHHHHHHHHhh-cCCCCEEEEEcCCC-cc
Confidence 888887765432 22222 345555 33334445555555666666 55667999999998 69
Q ss_pred hhhHHHHHHHHhhc
Q 001156 135 LAFMLAGLLLYRKQ 148 (1135)
Q Consensus 135 tg~~iaa~L~y~~~ 148 (1135)
+|+.+|+-++...+
T Consensus 1032 sg~f~ai~~l~e~~ 1045 (1087)
T KOG4228|consen 1032 TGTFCAISILLERM 1045 (1087)
T ss_pred eeehHHHHHHHHHH
Confidence 99999988777664
No 52
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.38 E-value=0.27 Score=53.95 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=46.3
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCc-EEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHHH
Q 001156 87 DYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQN-VLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMVY 160 (1135)
Q Consensus 87 ~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~N-VvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~~ 160 (1135)
.+|..||-. +.|-.|.-+.-+|+...-.+| -|+|||.+|- .|+.|+..||||-.-. -+-.+|.+++.
T Consensus 222 qipisDh~S-----qnls~ffpEAIsfIdeArsk~cgvLVHClaGI-SRSvTvtvaYLMqkl~-lslndAyd~Vk 289 (343)
T KOG1717|consen 222 QIPISDHAS-----QNLSQFFPEAISFIDEARSKNCGVLVHCLAGI-SRSVTVTVAYLMQKLN-LSLNDAYDFVK 289 (343)
T ss_pred eeeccchhh-----hhhhhhhHHHHHHHHHhhccCCcEEEeeeccc-cchhHHHHHHHHHHhc-cchhhHHHHHH
Confidence 356655422 445555556666665523333 7999999999 6999999999987554 46677999874
No 53
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.92 E-value=0.43 Score=56.90 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=47.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhcCC-CcEEEEEecCCCcCchhhHHHHHHHHhhccC-----CHHHHHHHHHHhc
Q 001156 90 REYEHCPLLPLEMIHHFLRSSESWLSLEGQ-QNVLLMHCERGGWPVLAFMLAGLLLYRKQYT-----GELKTLEMVYKQA 163 (1135)
Q Consensus 90 ~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~-~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~-----~~~~al~~~~~~~ 163 (1135)
|+|+|.|. ....++.+++. ..+.. .+ ..=++|||.+|. ||||++++...+...+.. ...+.+..+ |..
T Consensus 272 WPd~~~p~-~~~~~l~~~~~--~~~~~-~~~~~P~vVhcsaG~-gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~i-R~q 345 (415)
T KOG0789|consen 272 WPDHGAPD-SVKSILPLLRQ--SVLEL-RPKQEPIEVHCSAGA-GRAGTLVLIEHALIELQGPEGEPPIDEILREI-RYQ 345 (415)
T ss_pred CccccCCc-chHHHHHHHHh--hhhhh-cCCCCCeEEECCCCC-CccchHHHHHHHHHHHhcCCCCccHHHHHHHH-HHH
Confidence 44555542 23344444443 33333 33 346999999999 699999987755555432 133343322 111
Q ss_pred chhhhccCCCCCCCchHHHHHHHHH
Q 001156 164 PRELLHLLSPLNPQPSQLRYLQYIS 188 (1135)
Q Consensus 164 ~~~~~~~~~~~~~~PSQ~RYv~Yf~ 188 (1135)
|. +.+.+.-|..|++...
T Consensus 346 --R~-----~~vqt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 346 --RP-----GAVQSPLQYLFIYAAT 363 (415)
T ss_pred --hh-----hcccchhHHHHHHHHH
Confidence 11 1236888888876543
No 54
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.12 E-value=0.65 Score=57.66 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=12.7
Q ss_pred CCcCCCCccccccccccccchh
Q 001156 859 RRSSLKPLHWSKIDLRRANNTE 880 (1135)
Q Consensus 859 ~~~~Lk~~hw~kLD~kRaqNi~ 880 (1135)
-+.++--++|. +.|..++-+
T Consensus 367 tk~~~p~lnW~--alKP~qv~~ 386 (830)
T KOG1923|consen 367 TKTKSPSLNWL--ALKPIQVKG 386 (830)
T ss_pred ccccCCCcccc--ccCcccccc
Confidence 34566678997 556655554
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.66 E-value=5.5 Score=51.65 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=24.0
Q ss_pred ccccchhhhhccC----CC---CHHhHHHHHHhhccccccHHHHHHHHH
Q 001156 874 RRANNTEIMLTKV----KM---PLPDMMVAVLAMDESVLDVDQVENLIK 915 (1135)
Q Consensus 874 kRaqNi~I~L~kl----k~---~~~ei~~aI~~lD~~~L~~d~ve~L~~ 915 (1135)
++.+|+.+.++-| +- +.+++.+.++.++. .++.++|+.|-.
T Consensus 1471 ~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~l-p~tpeqi~~L~~ 1518 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALEL-PLTPEQIQQLTG 1518 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence 4456666666655 22 33455666676665 466777776643
No 56
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=89.39 E-value=5.6 Score=41.45 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=69.5
Q ss_pred hhccCCCCCCeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCee
Q 001156 6 RFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTV 85 (1135)
Q Consensus 6 r~~~~~~~lDLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V 85 (1135)
+++....=-+|+.||+-++.- .|. ....+.|-++|+- =+|.|.+-|.-+..+.+ +......+
T Consensus 7 ~~~~~~~~~~~SqIt~sLfl~------~Gv---------aA~~k~~l~~~~I--t~IiNat~E~pn~~l~~-~qy~kv~~ 68 (198)
T KOG1718|consen 7 TLEVQPSIGGMSQITPSLFLS------NGV---------AANDKLLLKKRKI--TCIINATTEVPNTSLPD-IQYMKVPL 68 (198)
T ss_pred ccccCCCccchhhcCcceeEe------ccc---------cccCHHHHHhcCc--eEEEEcccCCCCccCCC-ceeEEEEc
Confidence 344444446788888888774 122 1124555667776 68999988763322222 11122223
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHH-HHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHHHHHHH
Q 001156 86 MDYPREYEHCPLLPLEMIHHFLRS-SESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELKTLEMV 159 (1135)
Q Consensus 86 ~~~p~~~~~~p~p~L~~l~~~c~~-~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~al~~~ 159 (1135)
.|- |--.|..-|....+ |++--.. +--.+|||.||- .|++.++-|||+... +.+..||..++
T Consensus 69 ~D~-------p~~~l~~hfD~vAD~I~~v~~~---gG~TLvHC~AGV-SRSAsLClAYLmK~~-~msLreAy~~v 131 (198)
T KOG1718|consen 69 EDT-------PQARLYDHFDPVADKIHSVIMR---GGKTLVHCVAGV-SRSASLCLAYLMKYH-CMSLREAYHWV 131 (198)
T ss_pred ccC-------CcchhhhhhhHHHHHHHHHHhc---CCcEEEEEcccc-chhHHHHHHHHHHHc-cchHHHHHHHH
Confidence 332 22233333332222 2222222 235899999998 699999999988654 34566777766
No 57
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=88.23 E-value=1.2 Score=43.51 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=50.4
Q ss_pred CeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCcc------ccccccccccCCeeecC
Q 001156 15 RLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKR------SQISDILSQYDMTVMDY 88 (1135)
Q Consensus 15 DLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~------s~~~~~~~~f~~~V~~~ 88 (1135)
|+.-|++++.+. +-|+. +++. .|.. .|= =.|+|++...-. ..+.......+.+.++.
T Consensus 1 di~~i~~~~~vs--~Q~~~-----------~d~~-~la~-~Gf--ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 1 DIRQISDDLSVS--GQPSP-----------EDLA-QLAA-QGF--KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp --EEEETTEEEE--CS--H-----------HHHH-HHHH-CT----EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred CCEecCCCeEEC--CCCCH-----------HHHH-HHHH-CCC--cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 788899999998 54432 2233 4443 332 468888743211 11222345678888889
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHH
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFML 139 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~i 139 (1135)
|+...+ ++.+.+..|.+.|++ + . ++ |++||+.|. |.+.+.
T Consensus 64 Pv~~~~---~~~~~v~~f~~~l~~-~-~-~P---vl~hC~sG~--Ra~~l~ 103 (110)
T PF04273_consen 64 PVDGGA---ITEEDVEAFADALES-L-P-KP---VLAHCRSGT--RASALW 103 (110)
T ss_dssp ---TTT-----HHHHHHHHHHHHT-T-T-TS---EEEE-SCSH--HHHHHH
T ss_pred ecCCCC---CCHHHHHHHHHHHHh-C-C-CC---EEEECCCCh--hHHHHH
Confidence 886533 488999998877766 1 2 33 999998776 776553
No 58
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=87.93 E-value=0.51 Score=47.99 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC---CcCchhhHHHHHHHHhhccCCHHHHHHHH
Q 001156 97 LLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERG---GWPVLAFMLAGLLLYRKQYTGELKTLEMV 159 (1135)
Q Consensus 97 ~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~G---k~grtg~~iaa~L~y~~~~~~~~~al~~~ 159 (1135)
++.|.+|+.||..+++-|+....++-.||||-.. +....+++||||++..... ++++|++.|
T Consensus 43 PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~-spe~A~~~l 107 (141)
T PF14671_consen 43 PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGM-SPEEAYKPL 107 (141)
T ss_dssp ---HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 5799999999999999999833446777888642 3345789999998876544 577798877
No 59
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=87.38 E-value=0.69 Score=56.67 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhhccCCHHH-----HHHHH
Q 001156 89 PREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYTGELK-----TLEMV 159 (1135)
Q Consensus 89 p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~~~~~~~~-----al~~~ 159 (1135)
-|.++|.| -+-.-|+.|-+.+..-+.. .---|+|||.+|- |||||.|..=|+..++..++.+ +|+++
T Consensus 899 SWp~egvP-asarslLdFRRKVNK~YRG--RScpIiVH~sdGa-GRTG~YiliDmvl~Rm~kGakeIDIaATlEHl 970 (1004)
T KOG0793|consen 899 SWPDEGVP-ASARSLLDFRRKVNKCYRG--RSCPIIVHCSDGA-GRTGTYILIDMVLNRMAKGAKEIDIAATLEHL 970 (1004)
T ss_pred cccccCCc-cchHHHHHHHHHhhhhccC--CCCceEEEccCCC-CccceeeeHHHHHHHHhccchhhhHHHHHHHH
Confidence 46677776 4566788999999888774 4567999999999 6999999888888887776653 55655
No 60
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=86.95 E-value=8.4 Score=49.66 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=22.2
Q ss_pred cCCCccchhhhHH--HHhhhHHHHHHHHHHHHHH
Q 001156 1005 SNSKMTLMHYLCK--IQLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1005 ~d~k~TLLhyLv~--iqL~~L~~e~~~l~k~Lek 1036 (1135)
..+...+||||++ .+...+.+-+..+.+++..
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3456789999999 4555566666666666654
No 61
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.27 E-value=0.31 Score=62.95 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=32.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHH--hhcCCCcEEEEEecCCCcCchhhHH
Q 001156 90 REYEHCPLLPLEMIHHFLRSSESWL--SLEGQQNVLLMHCERGGWPVLAFML 139 (1135)
Q Consensus 90 ~~~~~~p~p~L~~l~~~c~~~~~wL--~~~d~~NVvviHCk~Gk~grtg~~i 139 (1135)
|+|||.|--+ .-|+.|.+.+..+- .+ ++ +||||.||- ||||+.|
T Consensus 703 Wpd~gvPe~~-t~lL~f~rrvk~~~p~~a-GP---iVVHCSAGv-GRTG~fi 748 (1087)
T KOG4228|consen 703 WPDHGVPETP-TGLLKFRRRVKTFNPPDA-GP---IVVHCSAGV-GRTGCFI 748 (1087)
T ss_pred CCCCCCcccc-hHHHHHHHHhccCCCcCC-CC---EEEECCCCC-CCcceEE
Confidence 7788877333 44678888888765 44 45 999999998 6999765
No 62
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.01 E-value=15 Score=36.55 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHE 1098 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~ 1098 (1135)
+.....++..|...+.++...|..++..|||..- ..+++=..+.+...+|+.-++
T Consensus 63 ~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E--~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 63 LRALKKEVEELEQELEELQQRYQTLLELLGEKSE--EVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788899999999999999999999443 346666666666666665544
No 63
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.94 E-value=13 Score=46.90 Aligned_cols=207 Identities=14% Similarity=0.213 Sum_probs=109.3
Q ss_pred ccchhhhhccCCCCHHhHHHHHHhhccccccH----------HHHHHHHHhCCChHHHHHhhhccCCCCCCCh-hhh-HH
Q 001156 876 ANNTEIMLTKVKMPLPDMMVAVLAMDESVLDV----------DQVENLIKFCPTKEEMELLKNYTGDKENLGK-CEQ-IS 943 (1135)
Q Consensus 876 aqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~----------d~ve~L~~~~Pt~eE~~~Lk~~~g~~~~L~~-~Eq-v~ 943 (1135)
.+++.++|..++-+..+....++.+....++. ..-..+..+.=...|+..|-...|+....+. .++ -.
T Consensus 20 ~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~ 99 (660)
T KOG4302|consen 20 LNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG 99 (660)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc
Confidence 45678888888888888877777666543321 1111122222223344444444444444333 222 12
Q ss_pred HHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCccchhhhHHH
Q 001156 944 EFRKNLNTVNSACEEVRNS-----IKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKI 1018 (1135)
Q Consensus 944 ~l~~~L~~l~~a~~el~~S-----~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TLLhyLv~i 1018 (1135)
.|+..|..|..+.++++.- ..|++++.-|-.+-+.+++. . .-.+|-+.....|.+ .
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~--~-~~~~~~~~D~~dlsl----------------~ 160 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP--E-DLPSFLIADESDLSL----------------E 160 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c-cCCcccccCcccccH----------------H
Confidence 3444444444444444332 34667777777777766654 0 111221211111111 3
Q ss_pred HhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 001156 1019 QLKSLAEEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNAD-ALALYFGEDPARCPFEQVTATLLNFVRLFR 1094 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~-~l~~yFGEd~~~~~~eeff~~l~~Fi~~fk 1094 (1135)
.|+.|...|+.+.+.... ++..|.++...-+..|--.+..+-..+. .|..+.|+.. .+-.++.+..|...+..|+
T Consensus 161 kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~-~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQS-RSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCccc-ccCCHHHHHHHHHHHHHHH
Confidence 455566666666654443 4555555555555555555554444443 4445555444 5556788888999999998
Q ss_pred HHHHHHHH
Q 001156 1095 KAHEENVK 1102 (1135)
Q Consensus 1095 ka~~en~k 1102 (1135)
..+.++.+
T Consensus 240 ~~k~qr~~ 247 (660)
T KOG4302|consen 240 EEKKQRLQ 247 (660)
T ss_pred HHHHHHHH
Confidence 88777664
No 64
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=83.60 E-value=23 Score=38.66 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 001156 1038 LKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPA 1075 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1075 (1135)
+.+|-.....+-.........-+....++.++||..-.
T Consensus 137 i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vD 174 (217)
T PF10147_consen 137 IAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVD 174 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 33444444444444555566667788999999998443
No 65
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=81.44 E-value=8.8 Score=43.21 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.8
Q ss_pred eecccccchhhhhh-ccccCCCccchhhhHH
Q 001156 988 AVGFKLDSLLKLTD-TRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 988 A~GFkLssL~KL~d-tKs~d~k~TLLhyLv~ 1017 (1135)
|.|| +..+.+|.+ .+....+..+++-||+
T Consensus 104 ALGl-Vtvfd~fm~GY~Pee~~~~IF~Alc~ 133 (283)
T PLN00047 104 ALGF-VTVYDQLMEGYPSDEDRDAIFKAYIK 133 (283)
T ss_pred hhhh-HHHHHHHHccCCChHHHHHHHHHHHH
Confidence 4454 333444443 3445567788888888
No 66
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=79.94 E-value=38 Score=43.41 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred cceecccccchhhhhhccc--cCCCccchhhhHH-----HHhhhHHHHHHHHHHHHHH---HHH-----------HHHHH
Q 001156 986 GSAVGFKLDSLLKLTDTRA--SNSKMTLMHYLCK-----IQLKSLAEEMQAIIKGLEK---TLK-----------GFISV 1044 (1135)
Q Consensus 986 g~A~GFkLssL~KL~dtKs--~d~k~TLLhyLv~-----iqL~~L~~e~~~l~k~Lek---~l~-----------~Fl~~ 1044 (1135)
.+..-|.|+.|.++.-+++ .++...|=-|... -+|-.|.+.|+-|+..|+- +|. ..++.
T Consensus 160 ~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~ 239 (683)
T PF08580_consen 160 HGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEE 239 (683)
T ss_pred cCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3355677777666663222 2344444444433 2566667777777776643 333 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1045 AEVEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1045 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
.+.+...|.+.|+.++..++.|.+=+|||.
T Consensus 240 L~~r~~~L~~k~~~L~~e~~~LK~ELiedR 269 (683)
T PF08580_consen 240 LEDRYERLEKKWKKLEKEAESLKKELIEDR 269 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 556666777888888888888888788844
No 67
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=79.03 E-value=10 Score=38.92 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=67.3
Q ss_pred CCeeeecCceEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccc--cCCeeecCCCC
Q 001156 14 DRLLEISERVYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQ--YDMTVMDYPRE 91 (1135)
Q Consensus 14 lDLtyIT~RIiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~--f~~~V~~~p~~ 91 (1135)
.|.-|.-.||+|. | ..+.....-+|+. .-||-=++-+.|-..-.++..+ ....+-|--+.
T Consensus 7 i~~~~f~t~Ivv~----P-------------l~~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~ 68 (172)
T COG5350 7 IDFDPFMTRIVVS----P-------------LSVIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEP 68 (172)
T ss_pred cccccceeeeEec----h-------------HHHHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCC
Confidence 4566777788775 2 1245556668875 4676666655553332222111 12223344455
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCch--hhHHHHHHHHhhc
Q 001156 92 YEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVL--AFMLAGLLLYRKQ 148 (1135)
Q Consensus 92 ~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grt--g~~iaa~L~y~~~ 148 (1135)
+.||-+|--+.+..+..-+++|=.. -=++|||.+|- +|+ ..|++++-++..+
T Consensus 69 ~~g~~ap~e~Hv~~i~DF~~~wp~~----apllIHC~aGI-SRStA~A~i~a~ala~~~ 122 (172)
T COG5350 69 DDGWIAPGEAHVRAIIDFADEWPRF----APLLIHCYAGI-SRSTAAALIAALALAPDM 122 (172)
T ss_pred CccccCCCHHHHHHHHHHHhcCccc----cceeeeecccc-ccchHHHHHHHHhhcccc
Confidence 6777777777777888778888554 45999999998 465 2455666566553
No 68
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=77.84 E-value=58 Score=34.59 Aligned_cols=47 Identities=38% Similarity=0.435 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1056 YSVAGRNADALALYFGE--DPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEAEMEKA 1120 (1135)
Q Consensus 1056 ~~~~~~~~~~l~~yFGE--d~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~~~~ 1120 (1135)
....++...++-+|||. |+..- .| +++.++.|.|.||+.+|++++++
T Consensus 166 ~~r~erli~eiqe~fGy~vDprd~----------RF--------~emLqqkEkeekK~~KeaKrk~k 214 (225)
T KOG4848|consen 166 EVRLERLIREIQEYFGYWVDPRDP----------RF--------EEMLQQKEKEEKKAVKEAKRKEK 214 (225)
T ss_pred HHHHHHHHHHHHHHhCccCCCCCH----------HH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788899997 44321 11 23444556666666666644433
No 69
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.46 E-value=75 Score=39.82 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1048 EVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1048 ~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
.+..++..|+.+...|+.++++|||... ..+++--.|.+...||+.-+.+...
T Consensus 905 ~~p~~~~~ledL~qRy~a~LqmyGEk~E--e~EELrlDl~dlK~mYk~QIdeLl~ 957 (961)
T KOG4673|consen 905 RVPGIKAELEDLRQRYAAALQMYGEKDE--ELEELRLDLVDLKEMYKEQIDELLN 957 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHH--HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3455778889999999999999999543 3577777888888888887776653
No 70
>PHA03378 EBNA-3B; Provisional
Probab=74.64 E-value=35 Score=42.52 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHHH
Q 001156 97 LLPLEMIHHFLRSS 110 (1135)
Q Consensus 97 ~p~L~~l~~~c~~~ 110 (1135)
++-+++++++|.+|
T Consensus 105 a~viqL~hAaydA~ 118 (991)
T PHA03378 105 APVIQLVHAVYDSM 118 (991)
T ss_pred chHHHHHHHHHHHh
Confidence 44677777777655
No 71
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=74.56 E-value=55 Score=34.25 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 001156 1021 KSLAEEMQAIIKGLEKTLKGFISVA-EVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEE 1099 (1135)
Q Consensus 1021 ~~L~~e~~~l~k~Lek~l~~Fl~~a-~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~e 1099 (1135)
+.|.++++.+.++++....+.++.+ ......|.+.+.++...++++...+-+-.-. -.+++..|+..+.+-++|
T Consensus 51 eeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~-----~~Ks~~~~l~q~~~~~eE 125 (165)
T PF09602_consen 51 EELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLS-----PSKSSFSLLSQISKQYEE 125 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----hHHHHHHHHHHHHhhHHH
Confidence 3444444455554444444444444 2344556677777777777777777542211 133455555555556666
Q ss_pred HHHHHHHHHHHHHH
Q 001156 1100 NVKQSELERKKAEK 1113 (1135)
Q Consensus 1100 n~k~~e~Ekkk~~r 1113 (1135)
+.++.-++.++.|.
T Consensus 126 tv~~~ieqqk~~r~ 139 (165)
T PF09602_consen 126 TVKQLIEQQKLTRE 139 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555544433
No 72
>PRK11637 AmiB activator; Provisional
Probab=74.40 E-value=89 Score=37.82 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001156 943 SEFRKNLNTVNSACEEV 959 (1135)
Q Consensus 943 ~~l~~~L~~l~~a~~el 959 (1135)
..+...+..+.....++
T Consensus 99 ~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 99 NQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444333333
No 73
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=73.73 E-value=74 Score=40.01 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC
Q 001156 1054 NLYSVAGRNADALALYFGEDPA 1075 (1135)
Q Consensus 1054 ~~~~~~~~~~~~l~~yFGEd~~ 1075 (1135)
+..+.+.+.+..+..-+.+...
T Consensus 351 ~~l~~l~~~~~~~~~~i~~~~~ 372 (560)
T PF06160_consen 351 KQLKELEKRYEDLEERIEEQQV 372 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCc
Confidence 3344444445555555555433
No 74
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.28 E-value=39 Score=44.51 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=19.1
Q ss_pred HHHHHHHHHhccccCCCCCCCcceecccccchhhhh
Q 001156 965 LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLT 1000 (1135)
Q Consensus 965 L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~ 1000 (1135)
.+++-.+|-.|+||++..+ -..+++..|+
T Consensus 1470 ~~el~~Li~~v~~Flt~~~-------adp~si~~vA 1498 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPD-------ADPDSIEEVA 1498 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCC-------CCHHHHHHHH
Confidence 4456667778999998854 3455555554
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.40 E-value=1.3e+02 Score=36.08 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=8.2
Q ss_pred HHHHHHHHhccccC
Q 001156 966 KEIMKKILYLGNTL 979 (1135)
Q Consensus 966 ~~lL~~IL~iGN~l 979 (1135)
+.+|..+|..-+.|
T Consensus 114 r~~La~~L~A~~r~ 127 (420)
T COG4942 114 RRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHhc
Confidence 45666666655555
No 76
>PRK13266 Thf1-like protein; Reviewed
Probab=70.79 E-value=18 Score=39.85 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHHhccccCCCCCC----Ccceecccccchhhhhh-ccccCCCccchhhhHH
Q 001156 966 KEIMKKILYLGNTLNQGTA----RGSAVGFKLDSLLKLTD-TRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 966 ~~lL~~IL~iGN~lN~g~~----rg~A~GFkLssL~KL~d-tKs~d~k~TLLhyLv~ 1017 (1135)
+++++-+|.=.+.|+.... --.|.|| +..+.+|.. .+....+..+++-||+
T Consensus 27 rrvv~ELLVElHLl~~n~~F~yDplfAlGl-vt~fd~fm~GY~Pee~~~~IF~Alc~ 82 (225)
T PRK13266 27 RRVVDELLVELHLLSVNSDFKYDPLFALGL-VTVFDRFMQGYRPEEHKDSIFNALCQ 82 (225)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhH-HHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3444444444444444331 1123444 233333332 3444567789999998
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.87 E-value=24 Score=43.28 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=70.8
Q ss_pred hcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCcc--chhhhHH--HHhhhHHHHHHHHHHHHHH
Q 001156 961 NSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMT--LMHYLCK--IQLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 961 ~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~T--LLhyLv~--iqL~~L~~e~~~l~k~Lek 1036 (1135)
+...++.||.++-.+-...+.+++.- ..+-| ..-.+.|+.+. |++|+++ -.+-..+++..++...++.
T Consensus 153 spH~WP~iL~mlhWlvdlI~~~t~~v-----~~~~l---~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~ 224 (581)
T KOG0995|consen 153 SPHNWPHILGMLHWLVDLIRINTALV-----EDSPL---EQEEAEDKTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKH 224 (581)
T ss_pred CCCccHHHHHHHHHHHHHHHHhHHHh-----hccch---hccchHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 34556666666666555555543211 00111 11122333343 5677777 2222223345555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
++.+|......++..++....++.+.+.++.. .+.+.-+.++..+.|.+-++.|+.+...+.
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek---~~~~~eslre~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREK---DPGKEESLREKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67777776777777777666666666663322 122223566777778888888887777665
No 78
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=69.14 E-value=32 Score=38.95 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1077 CPFEQVTATLLNFVRLFRKAHEENVKQSELERKK 1110 (1135)
Q Consensus 1077 ~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk 1110 (1135)
..+++||..+..-+..|.+-++-..+++.+++|+
T Consensus 250 ~G~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~ 283 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDEYEEEYKPEYEKKKAEKRL 283 (366)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3689999999999988887776544444444333
No 79
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.12 E-value=92 Score=33.84 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=24.8
Q ss_pred HhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1019 QLKSLAEEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
+|+.+++++..|+..|++ .++.+++.. ..+..-.+......+++..|++.|.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag----~~~~~a~~~F~~~l~d~~~~~~~De 57 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAG----KAFCQANKQFMNGIRDLAQYSSKDA 57 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHhCCcch
Confidence 455666666666666665 222222221 2222333333444455555666655
No 80
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=69.10 E-value=32 Score=34.01 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCCceEEEEEEEEcccC-CCC-CCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccc-eeec-
Q 001156 199 SDTPLLLNCLILRVLPI-YGG-NGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYC-RVQG- 274 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~-~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~G- 274 (1135)
....|.++-|..++++. +.. |+|.||++||-.... ...-.+.|.....+......+ .|.|+... .+.+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~-----~~~~~~kT~v~~~t~nP~~nE---~f~f~v~~~~l~~~ 84 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDK-----SNRGKRKTSVKKKTLNPVFNE---TLRYKVEREELPTR 84 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCC-----CccccccCccCcCCCCCccCc---eEEEECCHHHhCCC
Confidence 44678888888889988 654 889999999985211 000112232222222222222 24444321 2332
Q ss_pred CeEEEEEeccccccccceEEEEEecccccc
Q 001156 275 DVVIECVHLEDDLVREEMMFRVMFHTAFVL 304 (1135)
Q Consensus 275 DV~i~~~h~~~~~~~~~~mFr~~FnT~Fi~ 304 (1135)
.+.|.||+.+. +.+.+.|-++.|.-+.+.
T Consensus 85 ~L~~~V~d~~~-~~~~~~iG~~~i~L~~~~ 113 (125)
T cd08393 85 VLNLSVWHRDS-LGRNSFLGEVEVDLGSWD 113 (125)
T ss_pred EEEEEEEeCCC-CCCCcEeEEEEEecCccc
Confidence 57788888753 445567777777655543
No 81
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=68.29 E-value=68 Score=35.08 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQ 1103 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~ 1103 (1135)
++.++..+..++..|..+.+.++.=+..|-.. ...+|-.+|..|+..--..++++.+.
T Consensus 172 i~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~----k~~d~k~~l~~~~~~~i~~~~~~~~~ 229 (236)
T PF09325_consen 172 IEEAERRVEQAKDEFEEISENIKKELERFEKE----KVKDFKSMLEEYAESQIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333344331 12455566666665555555555443
No 82
>PRK11637 AmiB activator; Provisional
Probab=66.36 E-value=84 Score=38.01 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALAL 1068 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~ 1068 (1135)
++..+.++..++..+......++..+.
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 83
>PHA03378 EBNA-3B; Provisional
Probab=65.64 E-value=70 Score=40.03 Aligned_cols=9 Identities=33% Similarity=0.493 Sum_probs=6.9
Q ss_pred CCchHHHHH
Q 001156 176 PQPSQLRYL 184 (1135)
Q Consensus 176 ~~PSQ~RYv 184 (1135)
+++.|+||+
T Consensus 160 ~I~gQR~Wk 168 (991)
T PHA03378 160 PIAKQRRWK 168 (991)
T ss_pred CcccceeeE
Confidence 688888864
No 84
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.28 E-value=1.6e+02 Score=31.96 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek 1036 (1135)
|..++.|+..+...|++
T Consensus 4 i~~~E~~~~~le~~l~k 20 (200)
T cd07639 4 IEEVEAEVSELETRLEK 20 (200)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 44455555555554444
No 85
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.26 E-value=2.2e+02 Score=30.97 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARC--PFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~--~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
.|..|+..--..+.++...|.++.+.|+..+.-+..-..+- ..++.-..|..=.+.|..+.=+..
T Consensus 91 pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv 157 (200)
T cd07637 91 QLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATSTLTITRKCFRHLALDYV 157 (200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889888888889999999999999977777766543331 123333445555555555555544
No 86
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.03 E-value=4.2 Score=46.03 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=25.8
Q ss_pred eecccccchhhhhh--ccccCCCccchhhhHHHHhhhH
Q 001156 988 AVGFKLDSLLKLTD--TRASNSKMTLMHYLCKIQLKSL 1023 (1135)
Q Consensus 988 A~GFkLssL~KL~d--tKs~d~k~TLLhyLv~iqL~~L 1023 (1135)
.+||.|..|.+|+- .|-.++|.--+.|-.++.|-.|
T Consensus 27 ~wGf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial 64 (469)
T KOG3878|consen 27 KWGFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIAL 64 (469)
T ss_pred HhCCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhh
Confidence 57999999999985 5777777766666555444433
No 87
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=63.85 E-value=48 Score=33.41 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=49.8
Q ss_pred CceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEE
Q 001156 201 TPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIE 279 (1135)
Q Consensus 201 ~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~ 279 (1135)
..|.++-+.-++++. +..|.|.||++|+-+. ..+.|.....+......+. +.|...-.....+.|+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~----------~~~kT~vi~~t~nP~Wne~---f~f~v~~~~~~~l~i~ 81 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS----------QEHKTKVVSDTLNPKWNSS---MQFFVKDLEQDVLCIT 81 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC----------EeeeccccCCCCCCccCce---EEEEecCccCCEEEEE
Confidence 356666666678887 6777899999999864 2344444333344333333 3333221123457889
Q ss_pred EEeccccccccceEEEEEecc
Q 001156 280 CVHLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 280 ~~h~~~~~~~~~~mFr~~FnT 300 (1135)
||+.+. ....+.|-++.|.-
T Consensus 82 V~D~d~-~~~d~~lG~~~i~l 101 (136)
T cd08375 82 VFDRDF-FSPDDFLGRTEIRV 101 (136)
T ss_pred EEECCC-CCCCCeeEEEEEEH
Confidence 998863 23345666666543
No 88
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=63.73 E-value=40 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001156 1051 SVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yF 1070 (1135)
++...|..+.+.+++++.-.
T Consensus 893 ~~~~~~d~~~~~~e~~~~~l 912 (1259)
T KOG0163|consen 893 EMNSEYDVAVKNYEKLVKRL 912 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555544
No 89
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=63.51 E-value=52 Score=32.12 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeE
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVV 277 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~ 277 (1135)
....|.+.-|.-++++. +..+.|.||++|+-.... .....+.|....++......+. ..|.+...-.-...+.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~-----~~~~~~kT~v~~~~~nP~wne~-f~f~i~~~~l~~~~l~ 87 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDK-----SKSTRRKTSVKKDNLNPVFDET-FEFPVSLEELKRRTLD 87 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCC-----CCCceEecccccCCCCCEECeE-EEEecCHHHhcCCEEE
Confidence 45678888888899998 777889999999974311 0122344433222222111221 2233322211235677
Q ss_pred EEEEeccccc-cccceEEEEEe
Q 001156 278 IECVHLEDDL-VREEMMFRVMF 298 (1135)
Q Consensus 278 i~~~h~~~~~-~~~~~mFr~~F 298 (1135)
|.+++.+..+ ..++.|-++.+
T Consensus 88 i~v~~~~~~~~~~~~~iG~~~i 109 (127)
T cd04030 88 VAVKNSKSFLSREKKLLGQVLI 109 (127)
T ss_pred EEEEECCcccCCCCceEEEEEE
Confidence 8888876421 23444544443
No 90
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=63.42 E-value=54 Score=31.99 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=52.6
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccc-eeec-C
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYC-RVQG-D 275 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~G-D 275 (1135)
....|.++-+.-++++. +..|.|.||++||-..-. +.++.|.....+......+ .|.|.... .+.+ -
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-------~~~~kT~v~~~t~~P~wne---~f~f~v~~~~l~~~~ 83 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-------SNTKQSKIHKKTLNPEFDE---SFVFEVPPQELPKRT 83 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-------CCcEeCceEcCCCCCCccc---EEEEeCCHHHhCCCE
Confidence 34568888888888888 777889999999974210 1234443322222222222 24443321 1222 4
Q ss_pred eEEEEEeccccccccceEEEEEeccccc
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFHTAFV 303 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~FnT~Fi 303 (1135)
+.|++++.+. +.+.+.|-++.|..+-|
T Consensus 84 l~i~V~d~~~-~~~~~~iG~~~i~l~~~ 110 (124)
T cd08387 84 LEVLLYDFDQ-FSRDECIGVVELPLAEV 110 (124)
T ss_pred EEEEEEECCC-CCCCceeEEEEEecccc
Confidence 7778888753 33456677776655443
No 91
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=63.14 E-value=24 Score=42.04 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=10.0
Q ss_pred HHhCCChHHHHHhhhc
Q 001156 914 IKFCPTKEEMELLKNY 929 (1135)
Q Consensus 914 ~~~~Pt~eE~~~Lk~~ 929 (1135)
+.+.|+..+...+-+|
T Consensus 130 ~l~~PS~k~F~~IFK~ 145 (622)
T COG5185 130 FLKQPSQKGFIIIFKW 145 (622)
T ss_pred HhcCCccccHHHHHHH
Confidence 4467777776665554
No 92
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=62.84 E-value=41 Score=40.77 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=57.3
Q ss_pred HHhhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1018 IQLKSLAEEMQAIIKGLEK-----------------------TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1018 iqL~~L~~e~~~l~k~Lek-----------------------~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
.+++.|...+..+...+++ -+..|...+++.+..+++.-++.....+++.+||....
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~~~~~~~~~ 403 (432)
T smart00498 324 EKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKETTEYEQSSS 403 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4566666666666665544 34455555666666666667777888889999998654
Q ss_pred C--CCChHHHHHHHHHHHHHHHHHHHHH
Q 001156 1075 A--RCPFEQVTATLLNFVRLFRKAHEEN 1100 (1135)
Q Consensus 1075 ~--~~~~eeff~~l~~Fi~~fkka~~en 1100 (1135)
. ......+|.+..+|..++.+.+++.
T Consensus 404 ~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 404 RQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred hhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 2 2345567888999999999888754
No 93
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=62.26 E-value=1.5e+02 Score=30.25 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHhccccCCC
Q 001156 944 EFRKNLNTVNSACEEVRNS-----IKLKEIMKKILYLGNTLNQ 981 (1135)
Q Consensus 944 ~l~~~L~~l~~a~~el~~S-----~~L~~lL~~IL~iGN~lN~ 981 (1135)
.++..+..+...++.+..+ .....+-..+..+|+....
T Consensus 4 ~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 46 (194)
T cd07307 4 ELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPD 46 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3455555555555555553 2455667777777765543
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.81 E-value=1.7e+02 Score=37.87 Aligned_cols=56 Identities=5% Similarity=-0.035 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHH
Q 001156 1038 LKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPF--EQVTATLLNFVRLF 1093 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~--eeff~~l~~Fi~~f 1093 (1135)
+.+-.+...++++.+.+.++.+.+.++++++-+....-..+. .+|++-|..|-..+
T Consensus 591 l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 591 LRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 334444445667777777777777777777777553222222 23555555554443
No 95
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.76 E-value=20 Score=42.22 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1050 ASVTNLYSVAGRNADALALYFGEDPARCPFEQ-VTATLLNFVRLFRKAHEENVKQSELERKKAEKE 1114 (1135)
Q Consensus 1050 ~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~ee-ff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~re 1114 (1135)
..+..++.-+.-..+..-.||--...+-..+- .=.....|+.....++.|..+++.+|++|++||
T Consensus 339 e~iv~i~~li~ylid~~~~~~lS~~~k~kt~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~ke 404 (440)
T KOG2357|consen 339 EDIVEILNLIFYLIDKAKKLFLSKDAKAKTDKNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKE 404 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555543222111111 112234455555555566666566666554444
No 96
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=61.43 E-value=1.7e+02 Score=31.05 Aligned_cols=10 Identities=50% Similarity=0.292 Sum_probs=3.9
Q ss_pred HHHHHHHhCC
Q 001156 1063 ADALALYFGE 1072 (1135)
Q Consensus 1063 ~~~l~~yFGE 1072 (1135)
...+..++.+
T Consensus 74 ~~~l~~~~~~ 83 (229)
T PF03114_consen 74 ADALIELGSE 83 (229)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcc
Confidence 3333344333
No 97
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.02 E-value=3.9e+02 Score=34.20 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCccchhhhHHHHhh
Q 001156 942 ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKIQLK 1021 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TLLhyLv~iqL~ 1021 (1135)
+..|...+..+.+.+.+. ..++..+...++.+=|-|-...-....++ ++. -. .+|-..+|..--+.
T Consensus 228 l~~L~~~v~~l~~~k~qr--~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~-~~t----~~-------e~t~~~~ls~d~I~ 293 (660)
T KOG4302|consen 228 LDRLDKMVKKLKEEKKQR--LQKLQDLRTKLLELWNLLDTSDEERQRFV-HVT----ES-------EATEPNSLSLDIIE 293 (660)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCHHHHHHHc-ccc----HH-------HhhccccccHHHHH
Confidence 444555555555555443 34477778888877776655321111111 000 00 11111111122334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCCCCChHHHHHH
Q 001156 1022 SLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAG--RNADALALYFGEDPARCPFEQVTAT 1085 (1135)
Q Consensus 1022 ~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~--~~~~~l~~yFGEd~~~~~~eeff~~ 1085 (1135)
.+.+||..+..-=...|++|+.....++.+|+...---. +...+...||.+.- .....+.+.-
T Consensus 294 ~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~-~~d~~ell~~ 358 (660)
T KOG4302|consen 294 QVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSG-TEDVLELLEN 358 (660)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 445666665543334899999999999999987664333 67777778887654 3344444433
No 98
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=60.96 E-value=1.6e+02 Score=32.50 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFR 1094 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fk 1094 (1135)
+..|+.+++..+..|.+-.+....++.-+-+... +-+..|..|+..--
T Consensus 156 ~~kae~elr~A~~kf~~~~E~a~~~M~~il~~~~-----e~l~~L~~lv~AQl 203 (220)
T cd07617 156 LKKAEHELRVAQTEFDRQAEVTRLLLEGISSTHV-----NHLRCLHEFVEAQA 203 (220)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHH
Confidence 3446677877777777766666666665655322 22445555554433
No 99
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=60.93 E-value=40 Score=33.10 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=46.4
Q ss_pred EEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEeccc---ceeecCeEEEEE
Q 001156 206 NCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIY---CRVQGDVVIECV 281 (1135)
Q Consensus 206 ~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~---~~v~GDV~i~~~ 281 (1135)
+-+.-++++. +..|.|.||++|+-+.. .+.|.....+......+. ..|.+... -.-...+.|.||
T Consensus 4 ~V~~A~~L~~~d~~g~~dpYv~v~l~~~----------~~kT~v~~~t~nP~Wne~-f~F~v~~~~~~~~~~~~l~~~v~ 72 (126)
T cd08682 4 TVLQARGLLCKGKSGTNDAYVIIQLGKE----------KYSTSVKEKTTSPVWKEE-CSFELPGLLSGNGNRATLQLTVM 72 (126)
T ss_pred EEEECcCCcCCCCCcCCCceEEEEECCe----------eeeeeeecCCCCCEeCce-EEEEecCcccCCCcCCEEEEEEE
Confidence 3344456666 66778999999987642 233332222222222222 22333221 023456888999
Q ss_pred eccccccccceEEEEEeccccc
Q 001156 282 HLEDDLVREEMMFRVMFHTAFV 303 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~Fi 303 (1135)
+.+. ..+.+.|-++.|...=+
T Consensus 73 d~~~-~~~d~~iG~~~i~l~~l 93 (126)
T cd08682 73 HRNL-LGLDKFLGQVSIPLNDL 93 (126)
T ss_pred Eccc-cCCCceeEEEEEEHHHh
Confidence 9863 33456778877765443
No 100
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=60.90 E-value=65 Score=31.64 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=49.6
Q ss_pred CCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccc-eeecCeE
Q 001156 200 DTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYC-RVQGDVV 277 (1135)
Q Consensus 200 ~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~GDV~ 277 (1135)
...|.++-|.-++++. + .|.|.||++||-.... .......|.....+...... + .|.|+..- .++--++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~-----~~~~~~kT~v~~~t~~P~~n-E--~F~f~v~~~~~~~~l~ 81 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDK-----EVRFRQKTSTVPDSANPLFH-E--TFSFDVNERDYQKRLL 81 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCC-----CCcceEeCccccCCCCCccc-c--EEEEEcChHHhCCEEE
Confidence 3568888888888888 6 7889999999975311 11112223222222221112 2 24444321 1122366
Q ss_pred EEEEeccccccccceEEEEEeccc
Q 001156 278 IECVHLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 278 i~~~h~~~~~~~~~~mFr~~FnT~ 301 (1135)
|.+++.+....+++.|=++.|.-.
T Consensus 82 v~V~~~~~~~~~~~~lG~~~i~l~ 105 (119)
T cd08685 82 VTVWNKLSKSRDSGLLGCMSFGVK 105 (119)
T ss_pred EEEECCCCCcCCCEEEEEEEecHH
Confidence 777776543223467777776644
No 101
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=60.50 E-value=56 Score=31.82 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=51.5
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|.++=+.-++++. +..|.|.||++|+-++ +.+|.|.....+......+. ..|.+.. ....+.|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---------~~~~kT~~~~~t~nP~Wne~-f~f~v~~---~~~~l~~~v~ 68 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG---------KTVYKSKTIYKNLNPVWDEK-FTLPIED---VTQPLYIKVF 68 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC---------EEEEEeeeccCCCCCcccee-EEEEecC---CCCeEEEEEE
Confidence 4455556667877 6678899999999764 34565554333333333332 2333321 2567888899
Q ss_pred eccccccccceEEEEEecccccc
Q 001156 282 HLEDDLVREEMMFRVMFHTAFVL 304 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~Fi~ 304 (1135)
+.+.. ...+.|-++.|...-|.
T Consensus 69 D~d~~-~~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 69 DYDRG-LTDDFMGSAFVDLSTLE 90 (121)
T ss_pred eCCCC-CCCcceEEEEEEHHHcC
Confidence 87632 24456667666554443
No 102
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=59.94 E-value=1.6e+02 Score=35.54 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=12.4
Q ss_pred chhhhHH--HHhhhHHHHHHHHHHHHHH
Q 001156 1011 LMHYLCK--IQLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1011 LLhyLv~--iqL~~L~~e~~~l~k~Lek 1036 (1135)
+|+.|.+ -+|.++..||++....++.
T Consensus 242 ~l~Vl~~Da~El~~V~~el~~~~~~~~~ 269 (412)
T PF04108_consen 242 MLEVLENDAQELPDVVKELQERLDEMEN 269 (412)
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHH
Confidence 5555555 3444445555544444333
No 103
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=59.70 E-value=35 Score=32.06 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCcEEE
Q 001156 45 GGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQNVLL 124 (1135)
Q Consensus 45 ~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~NVvv 124 (1135)
+++.++|+ .+ ++.|+-+++.. +|. .-+.| |.--.+++.+..+...+..++.. +.+.-+|
T Consensus 7 ~~l~~~~~---~~-~~~iiDvR~~~----------e~~--~ghi~----gA~~ip~~~~~~~~~~~~~~~~~-~~~~~iv 65 (101)
T cd01518 7 AEWNELLE---DP-EVVLLDVRNDY----------EYD--IGHFK----GAVNPDVDTFREFPFWLDENLDL-LKGKKVL 65 (101)
T ss_pred HHHHHHHc---CC-CEEEEEcCChh----------hhh--cCEec----cccCCCcccHhHhHHHHHhhhhh-cCCCEEE
Confidence 45566664 23 48999988753 111 11122 11112344444444445555554 5666799
Q ss_pred EEecCCCcCchhhHHHHHHHHh
Q 001156 125 MHCERGGWPVLAFMLAGLLLYR 146 (1135)
Q Consensus 125 iHCk~Gk~grtg~~iaa~L~y~ 146 (1135)
|+|..|. |++. .|.+|...
T Consensus 66 vyC~~G~--rs~~-a~~~L~~~ 84 (101)
T cd01518 66 MYCTGGI--RCEK-ASAYLKER 84 (101)
T ss_pred EECCCch--hHHH-HHHHHHHh
Confidence 9996553 7754 34444433
No 104
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=58.95 E-value=87 Score=34.32 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1045 AEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKA 1111 (1135)
Q Consensus 1045 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~ 1111 (1135)
...-+..+...++.++...+.+...|-+ +|+.-|...+..+++.+.+..+..+.|-|++
T Consensus 56 lG~~L~~~s~~~r~i~~~~~~~~~~~~~--------~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~ 114 (219)
T PF08397_consen 56 LGDALMQISEVHRRIENELEEVFKAFHS--------ELIQPLEKKLEEDKKYITQLEKDYEKEYKRK 114 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344455566666666666666666654 4455566666666666666666555554443
No 105
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=58.86 E-value=39 Score=33.71 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceee-cC
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQ-GD 275 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~-GD 275 (1135)
+....|.+.-|.-++++. +..+.|.||++|+-.... .....+.|.....+......+. ..|.+... .++ .-
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~-----~~~~~~kT~v~~~t~nP~wne~-f~f~i~~~-~l~~~~ 84 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG-----KRLKKKKTTIKKRTLNPYYNES-FSFEVPFE-QIQKVH 84 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC-----cccceeeccceeCCCCCcccce-EEEECCHH-HhCCCE
Confidence 445678888888888888 777789999999974210 0011222322222222222222 22333221 222 25
Q ss_pred eEEEEEeccccccccceEEEEEec
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFH 299 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~Fn 299 (1135)
|.|++++.+. +...+.|-++.|-
T Consensus 85 l~~~v~d~~~-~~~~~~iG~~~i~ 107 (136)
T cd08402 85 LIVTVLDYDR-IGKNDPIGKVVLG 107 (136)
T ss_pred EEEEEEeCCC-CCCCceeEEEEEC
Confidence 7888998763 2334556555554
No 106
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=58.41 E-value=57 Score=31.35 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=39.6
Q ss_pred eEEEEEEEEcccC-CCC-CCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecc-cceeecCeEEE
Q 001156 203 LLLNCLILRVLPI-YGG-NGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDI-YCRVQGDVVIE 279 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~-~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~-~~~v~GDV~i~ 279 (1135)
|.++-+.-++++. +.. +.|.||++||-... .+.++.|.....+......+. ..|.+.. .+...-.+.|+
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-------~~~~~kT~v~~~t~nP~Wne~-f~f~~~~~~~~~~~~l~~~ 74 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-------GKPLYSTRIIRKDLNPVWEET-WFVLVTPDEVKAGERLSCR 74 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEccC-------CCccEeeeeECCCCCCcccee-EEEEeCchhccCCCEEEEE
Confidence 5566666678887 666 78999999987431 123444544333333222222 1222221 11123357788
Q ss_pred EEecc
Q 001156 280 CVHLE 284 (1135)
Q Consensus 280 ~~h~~ 284 (1135)
||+.+
T Consensus 75 V~d~d 79 (111)
T cd04041 75 LWDSD 79 (111)
T ss_pred EEeCC
Confidence 88875
No 107
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=58.40 E-value=14 Score=46.84 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
.|+.|++.+..+|..|++..---.+....+..||.++.
T Consensus 283 ~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~ 320 (619)
T PF03999_consen 283 NLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSY 320 (619)
T ss_dssp --------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccc
Confidence 89999999999999999887655566666777776543
No 108
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=58.23 E-value=63 Score=31.42 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=47.2
Q ss_pred EEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEEeccc
Q 001156 207 CLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVHLED 285 (1135)
Q Consensus 207 ~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~~ 285 (1135)
+|.-++++. +..+.|.||++||-....- .....++.|.....+...-..+ .|.|+......-.+.|+||+.+.
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~~t~nP~wne---~f~f~~~~~~~~~l~~~V~d~d~ 79 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGS---GQWVEIGRTEVIKNNLNPDFVT---TFTVDYYFEEVQKLRFEVYDVDS 79 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCC---CceEEeccEeEeCCCCCCCceE---EEEEEEEeEeeeEEEEEEEEecC
Confidence 456667777 7678899999999865210 0011233333222222221222 24443322334468899999875
Q ss_pred c---ccccceEEEEEecccc
Q 001156 286 D---LVREEMMFRVMFHTAF 302 (1135)
Q Consensus 286 ~---~~~~~~mFr~~FnT~F 302 (1135)
. ....+.|-++.+...-
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGE 99 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHH
Confidence 1 3344566666654433
No 109
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=57.59 E-value=1.2e+02 Score=37.23 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcch
Q 001156 946 RKNLNTVNSACEEVRNSIK 964 (1135)
Q Consensus 946 ~~~L~~l~~a~~el~~S~~ 964 (1135)
...+.++..-+..+++|+.
T Consensus 393 enhv~afntNitdmLdSRl 411 (574)
T PF07462_consen 393 ENHVNAFNTNITDMLDSRL 411 (574)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3334445444555666544
No 110
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=57.40 E-value=4.4e+02 Score=32.24 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=29.5
Q ss_pred CccccccccccccchhhhhccCCCCHHhHHHHHHhhccccccHHHHHHHHHh
Q 001156 865 PLHWSKIDLRRANNTEIMLTKVKMPLPDMMVAVLAMDESVLDVDQVENLIKF 916 (1135)
Q Consensus 865 ~~hw~kLD~kRaqNi~I~L~klk~~~~ei~~aI~~lD~~~L~~d~ve~L~~~ 916 (1135)
+|||. |.+-++--+|--.+-+ ..+|.. +|...+|...|+.|+.-
T Consensus 286 KL~Wr--~~~~~~~~Gv~~~r~~---~t~W~s---~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 286 KLFWR--DVKLAGGHGVSASRPC---ATLWAS---LDPVSVDTARLEHLFES 329 (817)
T ss_pred EEEee--cceecCCCCCcccccc---chhhhc---cCcceecHHHHHHHHHH
Confidence 68998 6666666666544433 355654 47778888888888753
No 111
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=57.10 E-value=50 Score=36.22 Aligned_cols=29 Identities=17% Similarity=0.435 Sum_probs=16.8
Q ss_pred eecccccchhhhhh-ccccCCCccchhhhHH
Q 001156 988 AVGFKLDSLLKLTD-TRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 988 A~GFkLssL~KL~d-tKs~d~k~TLLhyLv~ 1017 (1135)
|.|| +..+.+|.. .+....+..+++-||+
T Consensus 48 alG~-vt~fd~fm~GY~p~~~~~~If~Alc~ 77 (216)
T PF11264_consen 48 ALGL-VTVFDRFMQGYPPEEDKDSIFNALCQ 77 (216)
T ss_pred HhhH-HHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4454 333444432 3444567788888888
No 112
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=57.08 E-value=1e+02 Score=30.19 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=22.6
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|+++-|.-++++. +..|.|.||++|+.++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~ 31 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN 31 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC
Confidence 5666667777887 7778899999999764
No 113
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=57.07 E-value=66 Score=31.37 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccc-eee-cC
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYC-RVQ-GD 275 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~-GD 275 (1135)
....|.+.-+.-++++. +..+.|.||++||-.... +.++.|.....+...-.. ..|.|.... .+. .-
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-------~~~~kT~v~~~t~nP~wn---e~f~f~i~~~~l~~~~ 83 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-------KKKFETKVHRKTLNPVFN---ETFTFKVPYSELGNKT 83 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-------CCceecccCcCCCCCcee---eeEEEeCCHHHhCCCE
Confidence 45678888888889988 777889999999974211 123444332222221111 224444321 232 35
Q ss_pred eEEEEEeccccccccceEEEEEeccc
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~FnT~ 301 (1135)
+.|++++.+. ....+.|=++.|.-.
T Consensus 84 l~~~V~d~d~-~~~~~~lG~~~i~l~ 108 (124)
T cd08385 84 LVFSVYDFDR-FSKHDLIGEVRVPLL 108 (124)
T ss_pred EEEEEEeCCC-CCCCceeEEEEEecC
Confidence 7778888753 233455655555433
No 114
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=57.02 E-value=37 Score=33.61 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=50.5
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccc-eee-cC
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYC-RVQ-GD 275 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~-GD 275 (1135)
....|+++-|.-++++. +..|.|.||++|+-.... .....+.|............+ .|.|+... .+. --
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~-----~~~~~~kT~v~~~t~nP~wne---~f~f~~~~~~l~~~~ 82 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDA-----GKKSKHKTQVKKKTLNPEFNE---EFFYDIKHSDLAKKT 82 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCC-----CccCCceeeeEeccCCCCccc---EEEEECCHHHhCCCE
Confidence 45678888888889988 777889999999975311 001122232222222222222 24444321 122 23
Q ss_pred eEEEEEeccccccccceEEEEEecc
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~FnT 300 (1135)
+.|++|+.+. ...++.|-++.|.-
T Consensus 83 l~~~V~d~d~-~~~~~~lG~~~i~l 106 (133)
T cd08384 83 LEITVWDKDI-GKSNDYIGGLQLGI 106 (133)
T ss_pred EEEEEEeCCC-CCCccEEEEEEEec
Confidence 7778887653 23445666666653
No 115
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=56.81 E-value=3.2e+02 Score=30.63 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 001156 1044 VAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFR 1094 (1135)
Q Consensus 1044 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fk 1094 (1135)
.++.+++..+..|.+....+...+.-|=+.. .++...|.+|+..-.
T Consensus 162 ~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E-----~e~~~~l~~lv~aQl 207 (244)
T cd07595 162 ALKDEYEEAELKLEQCRDALATDMYEFLAKE-----AEIASYLIDLIEAQR 207 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----HHHHHHHHHHHHHHH
Confidence 3455666666666655555444444443322 345666666665533
No 116
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=56.75 E-value=47 Score=32.71 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=49.3
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|++.-|.-++++. +..+.|.||++|+-++.. ..+.|.....+......+ .|.|+....-...+.|+|+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--------~~~kT~~v~~t~nP~Wne---~f~f~~~~~~~~~L~~~V~ 70 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK--------INDRDNYIPNTLNPVFGK---MFELEATLPGNSILKISVM 70 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCee--------ccceeeEEECCCCCccce---EEEEEecCCCCCEEEEEEE
Confidence 3445555567777 777889999999986532 111111111112211111 2444332222345788888
Q ss_pred eccccccccceEEEEEecccccccC
Q 001156 282 HLEDDLVREEMMFRVMFHTAFVLFS 306 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~Fi~f~ 306 (1135)
+.+. +...+.|-++.+...=+.|.
T Consensus 71 d~d~-~~~dd~iG~~~i~l~~~~~~ 94 (124)
T cd04037 71 DYDL-LGSDDLIGETVIDLEDRFFS 94 (124)
T ss_pred ECCC-CCCCceeEEEEEeecccccc
Confidence 8753 33456777777766555554
No 117
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.73 E-value=83 Score=32.83 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=17.0
Q ss_pred HHHHhccccCCCCCCCcceecccccchhh
Q 001156 970 KKILYLGNTLNQGTARGSAVGFKLDSLLK 998 (1135)
Q Consensus 970 ~~IL~iGN~lN~g~~rg~A~GFkLssL~K 998 (1135)
...=.+|.-||.- ..|.||+=.+..+
T Consensus 31 ~AFeEvg~~L~RT---sAACGFRWNs~VR 56 (161)
T TIGR02894 31 SAFEEVGRALNRT---AAACGFRWNAYVR 56 (161)
T ss_pred HHHHHHHHHHccc---HHHhcchHHHHHH
Confidence 3334567777764 3578998877665
No 118
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=56.37 E-value=24 Score=34.50 Aligned_cols=42 Identities=29% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1026 EMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALA 1067 (1135)
Q Consensus 1026 e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1067 (1135)
-++.+++-|+..+--|++..+.++++|+++...++...+.++
T Consensus 84 Pik~~r~WLkenLhvflEkLE~EvreLEQlV~DLE~WLDalL 125 (135)
T PF15466_consen 84 PIKAIRNWLKENLHVFLEKLEKEVRELEQLVRDLEEWLDALL 125 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777778999999999999999999999999888765
No 119
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=56.24 E-value=63 Score=38.14 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=11.4
Q ss_pred hhhcccHHHHHHHHhhhCC
Q 001156 38 DDYKSYMGGIVAQLQDHFP 56 (1135)
Q Consensus 38 ~~yrn~i~~V~~~L~~~h~ 56 (1135)
+.|+|.-+..++.-+.+--
T Consensus 11 gk~mnPTDqaRKe~RKkEl 29 (487)
T KOG4672|consen 11 GKYMNPTDQARKEARKKEL 29 (487)
T ss_pred CcccCccHHHHHHHHHHHh
Confidence 4566666666666655543
No 120
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=56.01 E-value=1.5e+02 Score=31.66 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
+..++..+..+...+..+......=+..|-.. ...+|-.+|..|+......++++.
T Consensus 154 i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~----~~~dlk~~l~~~~~~qi~~~~~~~ 209 (218)
T cd07596 154 LEEAESALEEARKRYEEISERLKEELKRFHEE----RARDLKAALKEFARLQVQYAEKIA 209 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333333221 123445555555555555544443
No 121
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.99 E-value=52 Score=42.35 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1045 AEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEAE 1116 (1135)
Q Consensus 1045 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~ 1116 (1135)
++.+|..++...+.++..+..|..-=-.|- +-+..|..=+.+-++++...++|..+|+|++++|++
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK------q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDK------QSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444445555555555555554443222211 224445555666667777777777777655544443
No 122
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=53.84 E-value=41 Score=32.79 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
....|.+.-+.-++++. +..+.|.||++|+-.
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~ 46 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLL 46 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEEC
Confidence 45678888888888888 777889999999973
No 123
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.44 E-value=2.3e+02 Score=34.85 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=7.9
Q ss_pred CCceeEEEEEecC
Q 001156 219 NGCRPVIRVYGQD 231 (1135)
Q Consensus 219 ~gcrP~~~Iy~~~ 231 (1135)
.|-++-+.||+-.
T Consensus 29 ~~~~~~L~lYNsl 41 (586)
T KOG2007|consen 29 AGQPTELKLYNSL 41 (586)
T ss_pred CCCCCeEEEeecc
Confidence 3555667777743
No 124
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=53.32 E-value=44 Score=38.83 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=57.6
Q ss_pred eeecCceEEeecCCC--CCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCC
Q 001156 17 LEISERVYVFDCCFS--TDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEH 94 (1135)
Q Consensus 17 tyIT~RIiam~~~fP--~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~ 94 (1135)
.-+...|+.| |+. ..++.+..-.-..+++..+|+. + ++.|+..+... +|. +-+++ |
T Consensus 89 ~~~~~eLv~~--G~d~~v~~~~~~~~~is~~el~~~l~~---~-~~vlIDVR~~~----------E~~--~GhI~----G 146 (314)
T PRK00142 89 VKVRKEIVAL--GLDDDIDPLENVGTYLKPKEVNELLDD---P-DVVFIDMRNDY----------EYE--IGHFE----N 146 (314)
T ss_pred eeeeeeeeec--CCCCCCCccccCCcccCHHHHHHHhcC---C-CeEEEECCCHH----------HHh--cCcCC----C
Confidence 5566778888 774 2333233333455667776653 3 48899887642 121 12232 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHh
Q 001156 95 CPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYR 146 (1135)
Q Consensus 95 ~p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~ 146 (1135)
.--+++..+..+...++..+.. .++.-|||||. || .|+. ..++||.-.
T Consensus 147 Ai~ip~~~~~~~~~~l~~~~~~-~kdk~IvvyC~-~G-~Rs~-~aa~~L~~~ 194 (314)
T PRK00142 147 AIEPDIETFREFPPWVEENLDP-LKDKKVVMYCT-GG-IRCE-KASAWMKHE 194 (314)
T ss_pred CEeCCHHHhhhhHHHHHHhcCC-CCcCeEEEECC-CC-cHHH-HHHHHHHHc
Confidence 2224666665555544444444 45567999995 44 4764 445565543
No 125
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=53.29 E-value=5.6e+02 Score=32.34 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLY 1056 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~ 1056 (1135)
++..|+..+......|...+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666555544444333
No 126
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=53.17 E-value=61 Score=35.54 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001156 1086 LLNFVRLFR 1094 (1135)
Q Consensus 1086 l~~Fi~~fk 1094 (1135)
+..=...+.
T Consensus 150 v~~~~~ele 158 (219)
T PF08397_consen 150 VTERQSELE 158 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 127
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=52.83 E-value=1.2e+02 Score=30.56 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC---CCCCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRNADALALYFGE---DPARCP-------FEQVTATLLNFVRLFRKAHEENVKQS 1104 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGE---d~~~~~-------~eeff~~l~~Fi~~fkka~~en~k~~ 1104 (1135)
+|.+.+.++.+..+++.....+ ++.+.+ .++|-.+...||..-++-++|..++.
T Consensus 82 sl~Dqi~EWq~k~~E~~~~lhqL~~~ptKtSlSil~Qt~~QfeettkqfiEqqq~qReE~Q~ql 145 (165)
T TIGR02131 82 ALADQIEEWQDKTHEALAHLHELFFNPSKSSLSILKQAQEQFEETTKQFIEEQKKQREEAQHQL 145 (165)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665554433 343322 24555555666655555555555443
No 128
>PRK04195 replication factor C large subunit; Provisional
Probab=52.59 E-value=2.9e+02 Score=33.97 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC
Q 001156 1053 TNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
.-.++.-.+....++.+||-+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~ 396 (482)
T PRK04195 375 SIIFKHNPELAARLAAFLELTE 396 (482)
T ss_pred HHHHhcCHHHHHHHHHHcCCCH
Confidence 3344433556777888888654
No 129
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=52.28 E-value=88 Score=29.66 Aligned_cols=82 Identities=7% Similarity=0.011 Sum_probs=43.7
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|++.-+.-+++|. +..+.|.||++|+-++. .+.|.....+......+. +.|...-.-...+.|+|+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~----------~~kT~v~~~t~nP~Wne~---f~f~v~~~~~~~l~v~v~ 68 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKT----------TQKSKVKERTNNPVWEEG---FTFLVRNPENQELEIEVK 68 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCE----------EEeCccccCCCCCcccce---EEEEeCCCCCCEEEEEEE
Confidence 4455555667887 66778999999988652 333332222222222222 333322111235777888
Q ss_pred eccccccccceEEEEEeccc
Q 001156 282 HLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~ 301 (1135)
..+. .+.|-++.|+-+
T Consensus 69 d~~~----~~~iG~~~i~l~ 84 (105)
T cd04050 69 DDKT----GKSLGSLTLPLS 84 (105)
T ss_pred ECCC----CCccEEEEEEHH
Confidence 7653 345666666543
No 130
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=52.15 E-value=2.2e+02 Score=34.68 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccc----------cCCCCCCCcceecccccchhhhhh
Q 001156 942 ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGN----------TLNQGTARGSAVGFKLDSLLKLTD 1001 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN----------~lN~g~~rg~A~GFkLssL~KL~d 1001 (1135)
+.|+...+..+..-|.+ ++.++...|- ..-.|....+...|.++.-.++..
T Consensus 185 Y~El~~~l~~lr~ec~~---------Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~ 245 (441)
T PF12054_consen 185 YDELVPSLKRLRTECQQ---------LLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVG 245 (441)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHH
Confidence 77788888888888886 4666666665 222445556677899998888875
No 131
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=51.97 E-value=1.2e+02 Score=30.25 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=51.8
Q ss_pred CCCCceEEEEEEEEcccCCCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeE
Q 001156 198 PSDTPLLLNCLILRVLPIYGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVV 277 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~ 277 (1135)
+....|.+.-|.-++++ ..|+|.||++||-... .+ +.-..|...+++...+..+. ..|.+...-.-..-+.
T Consensus 11 ~~~~~L~V~vikA~~L~--~~g~sDPYVKv~L~~~----~k--~~k~kT~v~rktlnPvfnE~-f~F~v~~~~l~~~tL~ 81 (118)
T cd08677 11 KQKAELHVNILEAENIS--VDAGCECYISGCVSVS----EG--QKEAQTALKKLALHTQWEEE-LVFPLPEEESLDGTLT 81 (118)
T ss_pred CcCCEEEEEEEEecCCC--CCCCCCeEEEEEEcCC----cC--ccEEEcceecCCCCCccccE-EEEeCCHHHhCCcEEE
Confidence 34556677666667777 3477999999997421 11 12234555555555444333 3343333333344456
Q ss_pred EEEEeccccccccceEEEEEeccc
Q 001156 278 IECVHLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 278 i~~~h~~~~~~~~~~mFr~~FnT~ 301 (1135)
|.+|+.+ +..+.+.|=++.+..+
T Consensus 82 ~~V~d~D-rfs~~d~IG~v~l~l~ 104 (118)
T cd08677 82 LTLRCCD-RFSRHSTLGELRLKLA 104 (118)
T ss_pred EEEEeCC-CCCCCceEEEEEEccc
Confidence 6677665 2445566666666543
No 132
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=51.93 E-value=6.8e+02 Score=34.07 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=5.7
Q ss_pred ceeEEEEEec
Q 001156 221 CRPVIRVYGQ 230 (1135)
Q Consensus 221 crP~~~Iy~~ 230 (1135)
=.|+++||--
T Consensus 1103 ktpsLtV~l~ 1112 (1605)
T KOG0260|consen 1103 KTPSLTVYLT 1112 (1605)
T ss_pred CCceEEEEec
Confidence 3466666653
No 133
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=51.85 E-value=43 Score=42.23 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=9.7
Q ss_pred eEEEEEEEEcccCCCCCCce
Q 001156 203 LLLNCLILRVLPIYGGNGCR 222 (1135)
Q Consensus 203 l~L~~iil~~iP~~~~~gcr 222 (1135)
|.|-.|.+..++.+.+|||.
T Consensus 345 LHLGNieFEE~~ddsrGGC~ 364 (1259)
T KOG0163|consen 345 LHLGNIEFEEIPDDSRGGCQ 364 (1259)
T ss_pred HHccccchhcccCcCCCcee
Confidence 34444444455555555553
No 134
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=51.37 E-value=86 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.7
Q ss_pred CCCceEEEEEEEEcccC-CCC-CCceeEEEEEec
Q 001156 199 SDTPLLLNCLILRVLPI-YGG-NGCRPVIRVYGQ 230 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~-~gcrP~~~Iy~~ 230 (1135)
....|.++-|..+++|. +.. +.|.||++|+-.
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~ 47 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL 47 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe
Confidence 45678888888899998 654 789999999753
No 135
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=51.37 E-value=1.6e+02 Score=32.22 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1041 FISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1041 Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
=+..++..+...+..|..+.+.++.=+..|-.+- ..+|-..|..|+...-...++.++
T Consensus 151 ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r----~~dfk~~l~~~~e~~ie~~k~~ie 208 (216)
T cd07627 151 ELEEAERRASELKKEFEEVSELIKSELERFERER----VEDFRNSVEIYLESAIESQKELIE 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666555555555554321 245555666666555555554443
No 136
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.85 E-value=3.6e+02 Score=29.34 Aligned_cols=69 Identities=12% Similarity=0.148 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-C-CChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1034 LEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPA-R-CPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1034 Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~-~-~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
+-..|..|+..--.++.+.++.|.++.+.+...+.-...-+. + ...++.-..|..=.+.|..+.=+..-
T Consensus 88 l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ldYv~ 158 (200)
T cd07638 88 IKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNILTATRKCFRHIALDYVL 158 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333788899888888999999998888776666666654433 2 13455555677777777766666554
No 137
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=50.60 E-value=1.1e+02 Score=29.33 Aligned_cols=84 Identities=8% Similarity=0.062 Sum_probs=44.5
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
+.+.-+.-++++. +..+.|.||++|+-++. .+.|............+ .|.|...-.-..-+.|++|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~----------~~kT~v~~~t~nP~Wne---~f~f~~~~~~~~~l~v~v~ 68 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNE----------KYKSKVCSKTLNPQWLE---QFDLHLFDDQSQILEIEVW 68 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCE----------eEecccccCCCCCceeE---EEEEEecCCCCCEEEEEEE
Confidence 3445555667887 66678999999998642 23332222122211111 2334322112345667888
Q ss_pred eccccccccceEEEEEecc
Q 001156 282 HLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT 300 (1135)
+.+. ....+.|-++.|+-
T Consensus 69 d~~~-~~~~~~iG~~~~~l 86 (116)
T cd08376 69 DKDT-GKKDEFIGRCEIDL 86 (116)
T ss_pred ECCC-CCCCCeEEEEEEeH
Confidence 8764 23446666666653
No 138
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=50.52 E-value=1.2e+02 Score=29.03 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=45.6
Q ss_pred EEEEEEEEcccC-C-CCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 204 LLNCLILRVLPI-Y-GGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 204 ~L~~iil~~iP~-~-~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
.++-|.-+++|. + ..+.|.||++|+-++ ..+.|.....+......++...|.+.....-..-+.|+||
T Consensus 2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~ 71 (110)
T cd08688 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS----------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVM 71 (110)
T ss_pred EEEEEEEECCCccccCCCCCCceEEEEECC----------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEE
Confidence 444556667887 4 457799999999864 2333333222333222112223333332222345888999
Q ss_pred eccccccccceEEEEEeccc
Q 001156 282 HLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~ 301 (1135)
+.+. ..+.+.|-++.+.-.
T Consensus 72 d~d~-~~~~~~iG~~~~~l~ 90 (110)
T cd08688 72 DHDT-YSANDAIGKVYIDLN 90 (110)
T ss_pred eCCC-CCCCCceEEEEEeHH
Confidence 8763 223445666555433
No 139
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=50.29 E-value=78 Score=30.66 Aligned_cols=87 Identities=9% Similarity=0.079 Sum_probs=45.3
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|.++-|.-++++. +..+.|.||++|+-.+... ....++++-.+ ...-.. + .|.|........-+.|.+|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~-~~~kT~vv~~t------~nP~Wn-e--~f~f~i~~~~~~~l~v~v~ 71 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASD-EKKRTKTIKNS------INPVWN-E--TFEFRIQSQVKNVLELTVM 71 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCC-ccCccceecCC------CCCccc-e--EEEEEeCcccCCEEEEEEE
Confidence 4455556667777 6667899999998643110 01122333221 111111 1 2344332222334788899
Q ss_pred eccccccccceEEEEEeccc
Q 001156 282 HLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~ 301 (1135)
+.+.. ..+.|-++.|...
T Consensus 72 d~d~~--~~~~iG~~~~~l~ 89 (119)
T cd04036 72 DEDYV--MDDHLGTVLFDVS 89 (119)
T ss_pred ECCCC--CCcccEEEEEEHH
Confidence 87643 4566777766544
No 140
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=49.94 E-value=1.1e+02 Score=30.44 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=49.7
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeE
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVV 277 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~ 277 (1135)
....|.+.-+.-++++. +..|.|.||++|+-.... .....+.|.....+......+. +.|.+.....-.-.+.
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~-----~~~~~~kT~v~~~t~nP~wne~-f~f~i~~~~~~~~~l~ 85 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEG-----RRLKKKKTSVKKNTLNPTYNEA-LVFDVPPENVDNVSLI 85 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCC-----cccceecCCcccCCCCCcccce-EEEECCHHHhCCCEEE
Confidence 44668888888889988 777889999999963210 0001222222222222111121 2233322211112367
Q ss_pred EEEEeccccccccceEEEEEec
Q 001156 278 IECVHLEDDLVREEMMFRVMFH 299 (1135)
Q Consensus 278 i~~~h~~~~~~~~~~mFr~~Fn 299 (1135)
|+||+.+. ..+.+.|-++.|-
T Consensus 86 ~~v~d~~~-~~~~~~IG~~~l~ 106 (134)
T cd08403 86 IAVVDYDR-VGHNELIGVCRVG 106 (134)
T ss_pred EEEEECCC-CCCCceeEEEEEC
Confidence 88888753 3345677777774
No 141
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.76 E-value=8e+02 Score=33.02 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=11.3
Q ss_pred HHHHHhcchHHHHHHHHHhcc
Q 001156 956 CEEVRNSIKLKEIMKKILYLG 976 (1135)
Q Consensus 956 ~~el~~S~~L~~lL~~IL~iG 976 (1135)
|.+.-++..|.-.|..+|.++
T Consensus 1025 tt~~~E~s~wmp~lK~ll~~a 1045 (1049)
T KOG0307|consen 1025 TTEFDECSSWMPGLKRLLQIA 1045 (1049)
T ss_pred hcchhhhhhHHHHHHHHHHHH
Confidence 555555555555555555544
No 142
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.50 E-value=1.6e+02 Score=38.93 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhccccC
Q 001156 952 VNSACEEVRNSIKLKEIMKKILYLGNTL 979 (1135)
Q Consensus 952 l~~a~~el~~S~~L~~lL~~IL~iGN~l 979 (1135)
+..|..-|.-+..+...|++ .+||++
T Consensus 601 v~~al~Li~yd~~l~~amef--vFG~tl 626 (1174)
T KOG0933|consen 601 VELALSLIGYDDELKKAMEF--VFGSTL 626 (1174)
T ss_pred HHHHHHHhcCCHHHHHHHHH--HhCceE
Confidence 44455556666666666666 455533
No 143
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=49.25 E-value=1.1e+02 Score=31.77 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=53.8
Q ss_pred CCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecc--cceeec-C
Q 001156 200 DTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDI--YCRVQG-D 275 (1135)
Q Consensus 200 ~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~--~~~v~G-D 275 (1135)
...|.++-+.-++++. +..+.|.||++||-... ......+.|.....+......+ .|.|.. .-.+.. .
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-----~~~~~~~kT~vi~~t~nP~WnE---~f~f~~~~~~~l~~~~ 97 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-----KSKKSKQKTPVVKKSVNPVWNH---TFVYDGVSPEDLSQAC 97 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-----CCCCcceeCCccCCCCCCCCCC---EEEEecCCHHHhCCCE
Confidence 4568888888888988 76788999999976321 0112234444332233222222 244432 112333 3
Q ss_pred eEEEEEeccccccccceEEEEEecccc
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFHTAF 302 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~FnT~F 302 (1135)
+.|.||+.+. ..+.+.|-++.|+-+=
T Consensus 98 L~i~V~d~d~-~~~d~~lG~v~i~l~~ 123 (162)
T cd04020 98 LELTVWDHDK-LSSNDFLGGVRLGLGT 123 (162)
T ss_pred EEEEEEeCCC-CCCCceEEEEEEeCCc
Confidence 7788998764 3346778888877543
No 144
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=49.04 E-value=1.4e+02 Score=37.74 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=24.4
Q ss_pred HhcchHHHHHHHHHhcc--ccCCCCCCCcceecccccchhhhhh
Q 001156 960 RNSIKLKEIMKKILYLG--NTLNQGTARGSAVGFKLDSLLKLTD 1001 (1135)
Q Consensus 960 ~~S~~L~~lL~~IL~iG--N~lN~g~~rg~A~GFkLssL~KL~d 1001 (1135)
+++..|--|+..++.+- ++.|.+-.++.-.+|.+++.+|+..
T Consensus 457 ~ssg~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk 500 (661)
T KOG2256|consen 457 RSSGTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSK 500 (661)
T ss_pred hhcCceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCH
Confidence 34444433333333332 3566666566667888888888874
No 145
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=48.87 E-value=1e+02 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=25.7
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
....|.+.-+.-++++. +..+.|.||++|+-..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~ 45 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQ 45 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEc
Confidence 34667777788888888 6677899999998753
No 146
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=48.79 E-value=1e+02 Score=29.50 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=19.8
Q ss_pred EEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 204 LLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 204 ~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
.|+=|.-++++. +..+.|.||++|+-.+
T Consensus 2 ~v~vi~a~~L~~~~~~~~~dpyv~v~~~~ 30 (115)
T cd04040 2 TVDVISAENLPSADRNGKSDPFVKFYLNG 30 (115)
T ss_pred EEEEEeeeCCCCCCCCCCCCCeEEEEECC
Confidence 344455566777 6667799999999854
No 147
>PRK01415 hypothetical protein; Validated
Probab=48.64 E-value=78 Score=35.52 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=57.9
Q ss_pred eecCceEEeecCCCCCCCc--hhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCC
Q 001156 18 EISERVYVFDCCFSTDVLE--EDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHC 95 (1135)
Q Consensus 18 yIT~RIiam~~~fP~~~~~--e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~ 95 (1135)
-|-..|+.| +.+..... -+.| -.-+++..+|+. + ++.|+..++.. +|. +-+++ |.
T Consensus 91 r~k~eiV~~--g~~~~~~~~~~g~~-i~p~e~~~ll~~---~-~~vvIDVRn~~----------E~~--~Ghi~----gA 147 (247)
T PRK01415 91 RLKKEIVAM--NVDDLNVDLFKGEY-IEPKDWDEFITK---Q-DVIVIDTRNDY----------EVE--VGTFK----SA 147 (247)
T ss_pred EeeceEEec--CCCCCCccccCccc-cCHHHHHHHHhC---C-CcEEEECCCHH----------HHh--cCCcC----CC
Confidence 355678898 55532211 1223 334557777763 3 48899888742 121 22332 33
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHHHHHHHhh
Q 001156 96 PLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRK 147 (1135)
Q Consensus 96 p~p~L~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~iaa~L~y~~ 147 (1135)
-.+++..+-.|...++..+.. +.+.-|+|+|. || .|+ ...|++|.-.|
T Consensus 148 inip~~~f~e~~~~~~~~~~~-~k~k~Iv~yCt-gG-iRs-~kAa~~L~~~G 195 (247)
T PRK01415 148 INPNTKTFKQFPAWVQQNQEL-LKGKKIAMVCT-GG-IRC-EKSTSLLKSIG 195 (247)
T ss_pred CCCChHHHhhhHHHHhhhhhh-cCCCeEEEECC-CC-hHH-HHHHHHHHHcC
Confidence 334677666665555555555 56667999995 44 365 55566665544
No 148
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.46 E-value=1.3e+02 Score=36.74 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--------chHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccc
Q 001156 942 ISEFRKNLNTVNSACEEVRNS--------IKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRA 1004 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S--------~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs 1004 (1135)
..+|..++-.|....+.+|.. +.|+.=|..||.--|-= +-..++|+.|........
T Consensus 385 ~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P-------nq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 385 HVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP-------NQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHhhc
Confidence 344555555555555555543 44666666666644433 224556776666665553
No 149
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=48.18 E-value=2.5e+02 Score=30.85 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001156 942 ISEFRKNLNTVNSACEEVRN 961 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~ 961 (1135)
+.+|...|..+..+++.|..
T Consensus 21 i~~Le~~Lk~l~~~~e~lv~ 40 (224)
T cd07623 21 IENLDQQLRKLHASVESLVN 40 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666555555543
No 150
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=48.15 E-value=95 Score=31.74 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
.|+....+.++....++.-|-+.. ..+.+|+..|+..++..-.
T Consensus 100 ~L~~~~~e~eeeSe~lae~fl~g~---------~d~~~Fl~~f~~~R~~yH~ 142 (150)
T PF07200_consen 100 RLQAAASEAEEESEELAEEFLDGE---------IDVDDFLKQFKEKRKLYHL 142 (150)
T ss_dssp HHHHHHHHHHHHHHHHC-S-SSSH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHHH
Confidence 344445555555566655555421 2478889999887765544
No 151
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=47.85 E-value=1.3e+02 Score=29.51 Aligned_cols=69 Identities=12% Similarity=-0.055 Sum_probs=38.6
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|.++-+.-++++. +..+.|.||++|+-.+ ..++.|.....+......+. +.|.+.. ..-+.|++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~---------~~~~kT~v~~~t~nP~Wne~-f~~~~~~----~~~l~i~V~ 67 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG---------GQTHSTDVAKKTLDPKWNEH-FDLTVGP----SSIITIQVF 67 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC---------ccceEccEEcCCCCCcccce-EEEEeCC----CCEEEEEEE
Confidence 4455555567777 6667899999999753 12444443333333222222 2333322 446778888
Q ss_pred eccc
Q 001156 282 HLED 285 (1135)
Q Consensus 282 h~~~ 285 (1135)
+.+.
T Consensus 68 d~~~ 71 (123)
T cd08382 68 DQKK 71 (123)
T ss_pred ECCC
Confidence 8753
No 152
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=47.73 E-value=1.5e+02 Score=25.82 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=44.1
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEecccccccc-ccccccceEEEEecccceeecCeEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNV-RHYLQDECALVKIDIYCRVQGDVVIEC 280 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~-~~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1135)
|.++-+..++++. +..+.+.||++|+..+.. ...+.|....... -.|. + .+.|.....-..+|.|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~--e--~~~~~~~~~~~~~l~~~V 69 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSE-------STKYKTKVKKNTSNPVWN--E--EFEFPLDDPDLDSLSFEV 69 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTT-------CEEEEECCBSSBSSEEEE--E--EEEEEESHGCGTEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceee-------eeeeeeeeeeccccceee--e--eeeeeeecccccceEEEE
Confidence 4566667778888 667789999999997632 1334444322211 1221 2 345544334445599999
Q ss_pred Eecccc
Q 001156 281 VHLEDD 286 (1135)
Q Consensus 281 ~h~~~~ 286 (1135)
|+.+..
T Consensus 70 ~~~~~~ 75 (85)
T PF00168_consen 70 WDKDSF 75 (85)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 998753
No 153
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.12 E-value=4.8e+02 Score=29.70 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=28.3
Q ss_pred HHHHHHHHhccccCCCCCC-Ccceecccccchhhhhhcccc--------CCCccchhhhHH
Q 001156 966 KEIMKKILYLGNTLNQGTA-RGSAVGFKLDSLLKLTDTRAS--------NSKMTLMHYLCK 1017 (1135)
Q Consensus 966 ~~lL~~IL~iGN~lN~g~~-rg~A~GFkLssL~KL~dtKs~--------d~k~TLLhyLv~ 1017 (1135)
+++|.+.-.+-+.|+.... .....+|+++.=.|+.|+|.. +.+.+|.+.|.+
T Consensus 82 kELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~k 142 (267)
T PF10234_consen 82 KELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGK 142 (267)
T ss_pred HHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555444455544321 111245556555667777662 556778777777
No 154
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.45 E-value=4.2e+02 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=11.1
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 001156 1019 QLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek 1036 (1135)
+|..++.++..|+..|+|
T Consensus 3 ~~~~~E~~~~~le~~l~k 20 (200)
T cd07637 3 TIDEVETDVVEIEAKLDK 20 (200)
T ss_pred hHHHHHhhHHHHHHHHHH
Confidence 355566666666666666
No 155
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=46.44 E-value=1.2e+02 Score=35.68 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLY--SVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQ 1103 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~--~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~ 1103 (1135)
.|+.|.+++..++.++-+.. ++.+..+++++.||--+|....+..+...+...++.+++..++..++
T Consensus 37 ~L~~~~~~a~~~~~~~l~~~~~~~~e~~i~r~~dffvI~Pv~ldP~gIv~k~~hll~t~e~~~~~~v~~ 105 (355)
T PF07431_consen 37 ELEQYRNEARKKVIEYLKKNGSEDPESLIDRLLDFFVIEPVDLDPTGIVRKLKHLLRTYEDRFEKEVKR 105 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhheecCcCCCCchhhHHHHHHHHHhhHHHHHHHHHH
Confidence 37777788777776654433 45678889999999999999999999999999999998888776654
No 156
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.20 E-value=3.4e+02 Score=27.72 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEA 1115 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea 1115 (1135)
+++.=++.++.++..++.....+...++.+.. -.....+=+...+...+..+.+.+-|.||+++|-
T Consensus 77 rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~-------------~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~ 142 (151)
T PF11559_consen 77 RLKEQLEELERELASAEEKERQLQKQLKSLEA-------------KLKQEKEELQKLKNQLQQRKTQYEHELRKKEREI 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444322 1222233333334444445555666666655554
No 157
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.14 E-value=4.3e+02 Score=28.81 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=74.6
Q ss_pred Chhhh-HHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCcc
Q 001156 937 GKCEQ-ISEFRKNLNTVNSACEEVRNSIK-----LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMT 1010 (1135)
Q Consensus 937 ~~~Eq-v~~l~~~L~~l~~a~~el~~S~~-----L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~T 1010 (1135)
...|+ +++|...|..+...|..+.++.+ -+.+.+.+-.+|-.- .|.+. --++|.|+++
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~-----~~D~~--i~~~l~kFs~--------- 68 (200)
T cd07639 5 EEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHG-----PKDPM--MAECLEKFSD--------- 68 (200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCCch--hHHHHHHHHH---------
Confidence 34444 77888888888888888776533 233444444444311 11110 0012222221
Q ss_pred chhhhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--ChHHHHH
Q 001156 1011 LMHYLCKIQLKSLAEEMQ----AIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARC--PFEQVTA 1084 (1135)
Q Consensus 1011 LLhyLv~iqL~~L~~e~~----~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~--~~eeff~ 1084 (1135)
-|..+.+... .+...|...|..|+..--..+.+....|.++.+.|+..+.-+..-..+. ..++.-.
T Consensus 69 --------~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~k~~e~~Ea~~ 140 (200)
T cd07639 69 --------GLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRRKAQEVEEAAA 140 (200)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhccccchHHHHHHHH
Confidence 1222222212 2222333367777777777777777888877777777776666533221 2344444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001156 1085 TLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1085 ~l~~Fi~~fkka~~en~k 1102 (1135)
.|..=.+.|..+.=|.+.
T Consensus 141 ~l~~~R~~F~~~~ldYV~ 158 (200)
T cd07639 141 ALLGARATFRDRALDYAL 158 (200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666665555443
No 158
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=46.07 E-value=1.4e+02 Score=29.30 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=21.5
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|.++=|.-++++. +..+.|.||++|+-++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~ 31 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG 31 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC
Confidence 4455556667777 6677899999999764
No 159
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=45.90 E-value=4.9e+02 Score=30.19 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARC--PFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~--~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
++.+-+..-...|..++..+..+...++.+...+.+..... ....+|..+.++.+.+.++..++.
T Consensus 78 k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~ 144 (301)
T PF06120_consen 78 KAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELA 144 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777766666666543322 122344446666666666665543
No 160
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=45.75 E-value=1.1e+02 Score=31.27 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=7.4
Q ss_pred ecccccchhhhhh
Q 001156 989 VGFKLDSLLKLTD 1001 (1135)
Q Consensus 989 ~GFkLssL~KL~d 1001 (1135)
+.|+|..|+.|..
T Consensus 3 f~frL~~vL~l~~ 15 (146)
T PRK07720 3 YTFRLQKVLELKE 15 (146)
T ss_pred chhHHHHHHHHHH
Confidence 3466666655554
No 161
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=45.09 E-value=3.9e+02 Score=29.85 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
+.+++.++...+..|..+.+.+++=+.-|-++. .++|=..|..|+...-.+.++.++
T Consensus 168 v~e~e~k~~~a~~~fe~is~~ik~El~rFe~er----~~Dfk~~v~~fles~ie~qke~ie 224 (234)
T cd07665 168 IAEWESRVTQYERDFERISATVRKEVIRFEKEK----SKDFKNHIIKYLETLLHSQQQLVK 224 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666555555554422 345555666666666555555543
No 162
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=45.06 E-value=5.8e+02 Score=33.09 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1038 LKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPA--RCPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~--~~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
|.+.++.-+.+-..+.+.+.+-+..+.+..+-|--+.. +...++-+..+..|--.++.+.+||.
T Consensus 460 llk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~ 525 (861)
T PF15254_consen 460 LLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQ 525 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 33344444444444555554444445444444443222 23456778888888888888988887
No 163
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=44.72 E-value=2.1e+02 Score=31.90 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=28.1
Q ss_pred HhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1019 QLKSLAEEMQAIIKGLEK--TLKGFISVAEVEVASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek--~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
+|.++..|+++.+..=+. .+-.-.+.....+.+++..+++++-.-.+|..-|
T Consensus 187 ~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKL 240 (311)
T PF04642_consen 187 QLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKL 240 (311)
T ss_pred ccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhh
Confidence 466666777766643332 3333344445555555556665555555555555
No 164
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=44.70 E-value=6e+02 Score=33.49 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=10.6
Q ss_pred cchHHHHHHHHHhccc
Q 001156 962 SIKLKEIMKKILYLGN 977 (1135)
Q Consensus 962 S~~L~~lL~~IL~iGN 977 (1135)
...|-.|++.||.-.|
T Consensus 188 ~E~LL~IiE~ll~ea~ 203 (802)
T PF13764_consen 188 AEQLLEIIESLLSEAN 203 (802)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556677777776655
No 165
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.65 E-value=3.3e+02 Score=30.30 Aligned_cols=54 Identities=7% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEE 1099 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~e 1099 (1135)
+..++.++...+..|+.+.+..+.=+.-|-.+ ..++|-..|..|+..--.+.++
T Consensus 168 v~~~e~~~~~a~~~fe~Is~~~k~El~rFe~e----r~~dfk~~l~~fles~ie~qke 221 (234)
T cd07664 168 IKEWEAKVQQGERDFEQISKTIRKEVGRFEKE----RVKDFKTVIIKYLESLVQTQQQ 221 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555444444321 1244555555555444433333
No 166
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.57 E-value=2.8e+02 Score=34.22 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccC
Q 001156 942 ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTL 979 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~l 979 (1135)
++.++.-...+.+-++.|+. .+.+-+.-++.+-|.+
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~--~l~eke~sl~dlkeha 368 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQA--ELTEKESSLIDLKEHA 368 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 33344444444444444444 4445555555555544
No 167
>PRK05320 rhodanese superfamily protein; Provisional
Probab=44.51 E-value=62 Score=36.46 Aligned_cols=83 Identities=10% Similarity=0.023 Sum_probs=44.9
Q ss_pred cHHHHHHHHhhhCC--CCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 001156 43 YMGGIVAQLQDHFP--DASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQ 120 (1135)
Q Consensus 43 ~i~~V~~~L~~~h~--~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~ 120 (1135)
...++..+|+..+. +.+..|+..++.. +|. .-+++ |+--++++.+..+...+..++.. ..+
T Consensus 113 s~~el~~~l~~~~~~~~~~~vlIDVR~~~----------E~~--~Ghi~----GAiniPl~~f~~~~~~l~~~~~~-~kd 175 (257)
T PRK05320 113 DAATLKRWLDQGHDDAGRPVVMLDTRNAF----------EVD--VGTFD----GALDYRIDKFTEFPEALAAHRAD-LAG 175 (257)
T ss_pred CHHHHHHHHhccccccCCCeEEEECCCHH----------HHc--cCccC----CCEeCChhHhhhhHHHHHhhhhh-cCC
Confidence 44566777766431 1137888887742 122 12232 33334777776665545555443 344
Q ss_pred cEEEEEecCCCcCchhhHHHHHHHH
Q 001156 121 NVLLMHCERGGWPVLAFMLAGLLLY 145 (1135)
Q Consensus 121 NVvviHCk~Gk~grtg~~iaa~L~y 145 (1135)
.-|+|+|..|. |+ ..++.+|..
T Consensus 176 k~IvvyC~~G~--Rs-~~Aa~~L~~ 197 (257)
T PRK05320 176 KTVVSFCTGGI--RC-EKAAIHMQE 197 (257)
T ss_pred CeEEEECCCCH--HH-HHHHHHHHH
Confidence 56999996443 65 444555543
No 168
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=44.42 E-value=2.7e+02 Score=36.09 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 001156 1048 EVASVTNLYSVAGRNADALALYFG 1071 (1135)
Q Consensus 1048 ~l~~L~~~~~~~~~~~~~l~~yFG 1071 (1135)
.+......++...+..+.+..+++
T Consensus 730 Ri~~~~ae~e~~vk~k~~l~rm~~ 753 (988)
T KOG2072|consen 730 RIEAAIAERESAVKDKKRLSRMYD 753 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555555555555555
No 169
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=1.6e+02 Score=36.70 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=35.2
Q ss_pred hccCCCCCCeeeecCc---eEEeecCCCCCCCchhhhcccHHH-HHHHHhhhCCC---C-cEEEEEe
Q 001156 7 FFYRKPPDRLLEISER---VYVFDCCFSTDVLEEDDYKSYMGG-IVAQLQDHFPD---A-SFMVFNF 65 (1135)
Q Consensus 7 ~~~~~~~lDLtyIT~R---Iiam~~~fP~~~~~e~~yrn~i~~-V~~~L~~~h~~---~-~y~V~NL 65 (1135)
|-.++.=-=|+|+..+ +||= |+-|--|+ ...||.-++ +++.+.+.-.. + |.+|+.-
T Consensus 222 FRsr~RlPvlsw~Hp~sgAvIaR-cSQPlVG~--~g~Rn~~DEkll~~i~~a~A~~~e~~KL~I~DA 285 (717)
T KOG4471|consen 222 FRSRCRLPVLSWRHPESGAVIAR-CSQPLVGW--SGKRNKDDEKLLQAIADANAQDGERRKLLIVDA 285 (717)
T ss_pred hhhcCccceEEEEcCCCCceEEe-cCCcccch--hcccccchHHHHHHHHHhcccccccceEEEEec
Confidence 4445555668888765 7776 88898887 448877766 44555444333 2 5666654
No 170
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.30 E-value=1.9e+02 Score=38.28 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=15.6
Q ss_pred cccchhhhhhccccCCCccchhhhHH
Q 001156 992 KLDSLLKLTDTRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 992 kLssL~KL~dtKs~d~k~TLLhyLv~ 1017 (1135)
+|+....|.+|--.-+.--|+.|.++
T Consensus 157 ~L~pi~LL~eTekAig~~~ll~~h~e 182 (1072)
T KOG0979|consen 157 RLSPIELLVETEKAIGAEELLQYHIE 182 (1072)
T ss_pred cCChHHHHHHHHHhcCchhhHHHHHH
Confidence 66666666666443334457777666
No 171
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=44.28 E-value=3.4e+02 Score=27.15 Aligned_cols=26 Identities=4% Similarity=-0.032 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001156 1047 VEVASVTNLYSVAGRNADALALYFGE 1072 (1135)
Q Consensus 1047 ~~l~~L~~~~~~~~~~~~~l~~yFGE 1072 (1135)
..++.+.+.+.......++++.+...
T Consensus 109 ~~~~~~~~~~~~y~~~~~~~~~~~~~ 134 (181)
T PF12729_consen 109 QLLEEFKEAWKAYRKLRDQVIELAKS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34555666666666666666665544
No 172
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=44.11 E-value=3.8e+02 Score=29.33 Aligned_cols=13 Identities=0% Similarity=0.033 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001156 1083 TATLLNFVRLFRK 1095 (1135)
Q Consensus 1083 f~~l~~Fi~~fkk 1095 (1135)
|..|..|+..+..
T Consensus 69 l~~Fs~~l~el~~ 81 (207)
T cd07634 69 LKEFARLLIAVEE 81 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444433333
No 173
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.95 E-value=4.6e+02 Score=28.56 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=27.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001156 1019 QLKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGE 1072 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1072 (1135)
++..+++++..++.. +.+++..+..-++.+.+.+.....-...|..|.|.
T Consensus 2 ~i~~~E~~~~~l~~~----~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~ 51 (202)
T cd07606 2 QLQELEGSADELRDR----SLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGG 51 (202)
T ss_pred cHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555666555554 44455555555566666666555555555555543
No 174
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=43.59 E-value=1.4e+02 Score=28.88 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCceEEEEEEEEcccC-C-CCCCceeEEEEEec
Q 001156 199 SDTPLLLNCLILRVLPI-Y-GGNGCRPVIRVYGQ 230 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~-~~~gcrP~~~Iy~~ 230 (1135)
....|.+.-|.-++++. + ..+.|.||++||-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~ 45 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEe
Confidence 34567888888888888 6 57789999999963
No 175
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=43.41 E-value=3.9e+02 Score=29.72 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 001156 1044 VAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFR 1094 (1135)
Q Consensus 1044 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fk 1094 (1135)
.++.+++..+..|.+..+....++.-+-+... +....|.+|+..-.
T Consensus 167 ~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~-----~~~~~L~~lv~AQl 212 (229)
T cd07594 167 QAEQDLRVAQSEFDRQAEITKLLLEGISSTHA-----NHLRCLRDFVEAQM 212 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHH
Confidence 45677777777777776666666666666322 33555666654433
No 176
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=43.36 E-value=4.2e+02 Score=29.49 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001156 1044 VAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAH 1097 (1135)
Q Consensus 1044 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~ 1097 (1135)
.++.+++.+++.|.+..+....++.=+-+.. -++...|..|+..--.-|
T Consensus 167 ~~e~elr~ae~efees~E~a~~~m~~i~~~~-----~e~~~~L~~lv~AQl~Yh 215 (229)
T cd07616 167 AAEQELRITQSEFDRQAEITRLLLEGISSTH-----AHHLRCLNDFVEAQMTYY 215 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----hHHHHHHHHHHHHHHHHH
Confidence 4577777788888877777777665555422 245677777776544333
No 177
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=43.23 E-value=4.1e+02 Score=29.15 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALY 1069 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1069 (1135)
.++..+..+..-++.+.........-...|..|
T Consensus 17 ~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f 49 (207)
T cd07636 17 FIKELIKDGKSLIAALKNLSSAKRKFADSLNEF 49 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444333333333
No 178
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.08 E-value=4.7e+02 Score=29.33 Aligned_cols=12 Identities=0% Similarity=-0.053 Sum_probs=5.5
Q ss_pred hcchHHHHHHHH
Q 001156 961 NSIKLKEIMKKI 972 (1135)
Q Consensus 961 ~S~~L~~lL~~I 972 (1135)
.|.-|+.||..-
T Consensus 6 ~~~~f~~FLts~ 17 (240)
T cd07667 6 FNEHFNVFLTAK 17 (240)
T ss_pred cChHHHHHHcch
Confidence 344455554443
No 179
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.04 E-value=1.2e+02 Score=30.62 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=24.6
Q ss_pred eecccccchhhhhhccccCCCccchhhhHH--HHhhhHHHHHHHHHHHHHH
Q 001156 988 AVGFKLDSLLKLTDTRASNSKMTLMHYLCK--IQLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 988 A~GFkLssL~KL~dtKs~d~k~TLLhyLv~--iqL~~L~~e~~~l~k~Lek 1036 (1135)
-.|++|+.|.=.+ +.+|-+.+.. .+|+.+.+.|++.++.|..
T Consensus 25 wKGws~sD~M~vT-------rr~m~~A~~~v~kql~~vs~~l~~tKkhLsq 68 (126)
T PF07889_consen 25 WKGWSFSDLMFVT-------RRSMSDAVASVSKQLEQVSESLSSTKKHLSQ 68 (126)
T ss_pred ecCCchhHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688777655443 2333333333 5677777777777766554
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=42.89 E-value=2.5e+02 Score=36.94 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=22.4
Q ss_pred ecccccchhhhhh-ccccCCCccchhhhHH
Q 001156 989 VGFKLDSLLKLTD-TRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 989 ~GFkLssL~KL~d-tKs~d~k~TLLhyLv~ 1017 (1135)
.-|.|+.+.++++ ++.+.++.+|..+|.+
T Consensus 288 ~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~ 317 (802)
T PF13764_consen 288 EQFKLECFCEIAEGIPNNSNGNRLKDKILE 317 (802)
T ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 3578888888885 6777777888888877
No 181
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.52 E-value=3.7e+02 Score=27.10 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=34.7
Q ss_pred HhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1019 QLKSLAEEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNADALAL 1068 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1068 (1135)
.++.|..+++.|...=+. ..+.-.+.|+..+..+.+++..+.+.+..+..
T Consensus 28 ~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 28 ELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455666666665543332 45556677888888899999998888887765
No 182
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=42.43 E-value=1.9e+02 Score=28.06 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|.++-|.-+.++. +..+.|.||++|+.++
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~ 31 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG 31 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC
Confidence 4555555666776 6667799999999864
No 183
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=42.39 E-value=1.2e+02 Score=34.85 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHhccccCCCCCCCcceecccccchhhhhhcccc---CCCccchhhhHHHHhhhHHHHHHHHHHHHHH
Q 001156 969 MKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRAS---NSKMTLMHYLCKIQLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 969 L~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~---d~k~TLLhyLv~iqL~~L~~e~~~l~k~Lek 1036 (1135)
=.+.+.+|--|...+..|.+.+--=++..+|+++|.. +-+.++|+.|...++++| +|++-.++.||.
T Consensus 89 g~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~el-K~i~hh~KKLEg 158 (366)
T KOG1118|consen 89 GDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKEL-KDIQHHRKKLEG 158 (366)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHhhh
Confidence 3445566666666665555554444667788888874 225666776666655554 445554554443
No 184
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.84 E-value=4.5e+02 Score=27.81 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1040 GFISVAEVEVASVTNLYSVAGRNADALA 1067 (1135)
Q Consensus 1040 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1067 (1135)
++....+.+++.++..++++.+.+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555444444443
No 185
>PRK10869 recombination and repair protein; Provisional
Probab=41.58 E-value=8.2e+02 Score=30.83 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=9.9
Q ss_pred HHHHHhcchHHHHHHHHHh
Q 001156 956 CEEVRNSIKLKEIMKKILY 974 (1135)
Q Consensus 956 ~~el~~S~~L~~lL~~IL~ 974 (1135)
.+.+.+..++...++.++.
T Consensus 214 ~~~L~n~e~i~~~~~~~~~ 232 (553)
T PRK10869 214 YKRLANSGQLLTTSQNALQ 232 (553)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 186
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=41.45 E-value=1.2e+02 Score=29.09 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=45.7
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|.+.-+.-++++. +..+.|.||++|+-++.. ..++.+... +...-..+ . +.|.......-.+.|+||
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~----~kT~~~~~~-----~~nP~Wne-~--f~f~v~~~~~~~l~i~v~ 70 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT----KKTKTDFRG-----GQHPEWDE-E--LRFEITEDKKPILKVAVF 70 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECCCc----cccccccCC-----CCCCccCc-e--EEEEecCCCCCEEEEEEE
Confidence 5555566667887 667789999999976521 112222211 11111111 1 333322222345788999
Q ss_pred eccccccccceEEEEEeccc
Q 001156 282 HLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT~ 301 (1135)
+.+... .+.|-++.|...
T Consensus 71 d~~~~~--~~~iG~~~~~l~ 88 (118)
T cd08681 71 DDDKRK--PDLIGDTEVDLS 88 (118)
T ss_pred eCCCCC--CcceEEEEEecH
Confidence 976432 456666666544
No 187
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=41.16 E-value=1.3e+02 Score=30.20 Aligned_cols=75 Identities=8% Similarity=-0.107 Sum_probs=39.9
Q ss_pred cccCCCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecc-cceeecCeEEEEEecccccccc
Q 001156 212 VLPIYGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDI-YCRVQGDVVIECVHLEDDLVRE 290 (1135)
Q Consensus 212 ~iP~~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~-~~~v~GDV~i~~~h~~~~~~~~ 290 (1135)
+++.+..+.+.||++||.++. ++.|.....+......+ .|.|.. ...-...+.|++|+.+.. ...
T Consensus 39 ~L~~d~~g~~DPYVkV~~~~~----------~~kT~vi~~t~nPvWNE---~F~f~~~~~~~~~~L~v~V~D~d~~-s~d 104 (127)
T cd04032 39 GLWGDYFTSTDGYVKVFFGGQ----------EKRTEVIWNNNNPRWNA---TFDFGSVELSPGGKLRFEVWDRDNG-WDD 104 (127)
T ss_pred CCCcCcCCCCCeEEEEEECCc----------cccCceecCCCCCcCCC---EEEEecccCCCCCEEEEEEEeCCCC-CCC
Confidence 556555578999999998652 23332222222211222 244432 222345778889988642 244
Q ss_pred ceEEEEEecc
Q 001156 291 EMMFRVMFHT 300 (1135)
Q Consensus 291 ~~mFr~~FnT 300 (1135)
+.|-++.|.-
T Consensus 105 d~IG~~~i~l 114 (127)
T cd04032 105 DLLGTCSVVP 114 (127)
T ss_pred CeeEEEEEEe
Confidence 5666666643
No 188
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=41.02 E-value=1.3e+02 Score=30.03 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEecC-CCCCCCCCCceEEeccccccccccccccceEEEEecccc-eeec
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQD-SKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYC-RVQG 274 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~-~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~G 274 (1135)
+....|.++-|.-+.++. +..|.|.||++|+-.. .... -...|.....+......+ .|.|+... .++.
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~------~~~kT~v~~~t~nP~wnE---~F~f~i~~~~l~~ 81 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLI------KTKKTSCMRGTIDPFYNE---SFSFKVPQEELEN 81 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCccc------ceEcCccccCCCCCccce---eEEEeCCHHHhCC
Confidence 455678888888888888 7777899999998532 1100 012222222222222222 24444321 1222
Q ss_pred -CeEEEEEeccccccccceEEEEEecc
Q 001156 275 -DVVIECVHLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 275 -DV~i~~~h~~~~~~~~~~mFr~~FnT 300 (1135)
=+.|.||+.+. ..+.+.|-++.|..
T Consensus 82 ~~l~~~V~d~d~-~~~~~~iG~~~l~~ 107 (135)
T cd08410 82 VSLVFTVYGHNV-KSSNDFIGRIVIGQ 107 (135)
T ss_pred CEEEEEEEeCCC-CCCCcEEEEEEEcC
Confidence 26778888753 34566777877665
No 189
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=40.99 E-value=1.4e+02 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.9
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
+....|.+.-+.-++++. +..+.|.||++||-.
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Ll 44 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALL 44 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEc
Confidence 455678888888888888 778899999999964
No 190
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=40.89 E-value=2.1e+02 Score=28.28 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=53.3
Q ss_pred CCCceEEEEEEEEcccC-CC-CCCceeEEEEEecCCCCCCCCCCceEEeccccccccc-cccccceEEEEecccc-eeec
Q 001156 199 SDTPLLLNCLILRVLPI-YG-GNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVR-HYLQDECALVKIDIYC-RVQG 274 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~-~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~-~y~~~d~~~i~~~~~~-~v~G 274 (1135)
....|.++-|.-++++. +. .|.|.||++||-.... .......|........ .|. + .|.|++.. .+.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~-----~~~~~~kT~v~~~t~nP~wn-E---~f~f~i~~~~l~~ 83 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDK-----SRQSKRKTSIKRNTTNPVYN-E---TLKYSISHSQLET 83 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCC-----ccccceEeeeeeCCCCCccc-c---eEEEECCHHHhCC
Confidence 45668888888888887 43 5779999999985211 0001112222111122 222 1 24444321 1222
Q ss_pred -CeEEEEEeccccccccceEEEEEeccccccc
Q 001156 275 -DVVIECVHLEDDLVREEMMFRVMFHTAFVLF 305 (1135)
Q Consensus 275 -DV~i~~~h~~~~~~~~~~mFr~~FnT~Fi~f 305 (1135)
-+.|.||+.+. ..+.+.|-.+.|.-+-+.+
T Consensus 84 ~~L~~~V~d~~~-~~~~~~lG~~~i~l~~~~~ 114 (125)
T cd04029 84 RTLQLSVWHYDR-FGRNTFLGEVEIPLDSWNF 114 (125)
T ss_pred CEEEEEEEECCC-CCCCcEEEEEEEeCCcccc
Confidence 37888998763 3455678888777655443
No 191
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=40.55 E-value=3.9e+02 Score=26.78 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1027 MQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALAL----YFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1027 ~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~----yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
+-.+++.|-..|..|++..+.+++.|+.....++........ |++ .+-.-|..+..|...|.+..+-+++
T Consensus 9 Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~------nPlnaF~LIrRl~~dW~~~~~~~~~ 82 (134)
T PF08336_consen 9 LLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLS------NPLNAFSLIRRLHQDWPKWEKLMEQ 82 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh------cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555588999999999999999888888877665543 333 2445588899999888877655544
Q ss_pred H
Q 001156 1103 Q 1103 (1135)
Q Consensus 1103 ~ 1103 (1135)
.
T Consensus 83 ~ 83 (134)
T PF08336_consen 83 P 83 (134)
T ss_pred h
Confidence 3
No 192
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=40.26 E-value=9.6e+02 Score=31.21 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=11.7
Q ss_pred hhhcccHHHHHHHHhhhCCC
Q 001156 38 DDYKSYMGGIVAQLQDHFPD 57 (1135)
Q Consensus 38 ~~yrn~i~~V~~~L~~~h~~ 57 (1135)
..|.+-+.-|.+|.+..-++
T Consensus 38 k~ykhVVqsVeKfi~kCkpe 57 (894)
T KOG0132|consen 38 KLYKHVVQSVEKFIKKCKPE 57 (894)
T ss_pred HHHHHHHHHHHHHHHhCCcc
Confidence 45666666666666654443
No 193
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=40.16 E-value=2.8e+02 Score=33.07 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcchHHHHHHHHHhccccC
Q 001156 952 VNSACEEVRNSIKLKEIMKKILYLGNTL 979 (1135)
Q Consensus 952 l~~a~~el~~S~~L~~lL~~IL~iGN~l 979 (1135)
|..|..+-.++..+..||.+.=.+|+--
T Consensus 13 v~KAT~e~nT~enW~~IlDvCD~v~~~~ 40 (462)
T KOG2199|consen 13 VEKATDEKNTSENWSLILDVCDKVGSDP 40 (462)
T ss_pred HHHhcCcccccccHHHHHHHHHhhcCCC
Confidence 4455555566666666666666666533
No 194
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.11 E-value=3e+02 Score=36.15 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNADAL 1066 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1066 (1135)
++.|.+++.+.++.++. .+.....+++...+.|++.++++++..+++
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333 333333333334444444444444443333
No 195
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=39.97 E-value=2.1e+02 Score=28.45 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=51.6
Q ss_pred CCCceEEEEEEEEcccC-CC-CCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEeccc-ceeec-
Q 001156 199 SDTPLLLNCLILRVLPI-YG-GNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIY-CRVQG- 274 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~-~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~-~~v~G- 274 (1135)
....|.++-+..++++. +. .|.|.||++||-.... +..--+.|.....+......+ .|.|++. -.+.+
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~-----~~~~k~kT~v~~~t~nPvfNE---~F~f~v~~~~l~~~ 84 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDK-----SHNSKRKTAVKKGTVNPVFNE---TLKYVVEADLLSSR 84 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCC-----cccceeecccccCCCCCccce---EEEEEcCHHHhCCc
Confidence 45678888888888887 65 4899999999974211 000112222222222222222 2444432 12333
Q ss_pred CeEEEEEeccccccccceEEEEEeccccc
Q 001156 275 DVVIECVHLEDDLVREEMMFRVMFHTAFV 303 (1135)
Q Consensus 275 DV~i~~~h~~~~~~~~~~mFr~~FnT~Fi 303 (1135)
.+.|.++|.+. +.+++.|=.++|.-+-+
T Consensus 85 ~L~v~V~~~~~-~~~~~~lG~~~i~L~~~ 112 (128)
T cd08392 85 QLQVSVWHSRT-LKRRVFLGEVLIPLADW 112 (128)
T ss_pred EEEEEEEeCCC-CcCcceEEEEEEEcCCc
Confidence 56677777653 33456666666654433
No 196
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.90 E-value=2.5e+02 Score=33.29 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCChHHHHHHHHHHH
Q 001156 1041 FISVAEVEVASVTNLYSVAGRNADALALYFGEDP--ARCPFEQVTATLLNFV 1090 (1135)
Q Consensus 1041 Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~--~~~~~eeff~~l~~Fi 1090 (1135)
-++.+.-+++.|.=...-+.+.++.+..|=..+. .-++.++|+...-.-+
T Consensus 27 ~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~ 78 (355)
T PF09766_consen 27 EVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEI 78 (355)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhc
Confidence 3444444444444444445555555555544333 2357788887554443
No 197
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=39.85 E-value=4.7e+02 Score=28.69 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC------ChHHHHHHHHHHHHHHHH
Q 001156 1025 EEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARC------PFEQVTATLLNFVRLFRK 1095 (1135)
Q Consensus 1025 ~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~------~~eeff~~l~~Fi~~fkk 1095 (1135)
+.|+..+..|+. ++++.+..+..-++.+.+.+.....-...|..|..+-.... .+.+.+..|...+.....
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~ 81 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVED 81 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 001156 1096 AHEENVKQSELERKKAEKEAEMEKAKGINLTKK 1128 (1135)
Q Consensus 1096 a~~en~k~~e~Ekkk~~rea~~~~~~~~~~~~~ 1128 (1135)
.+..+..+.+..-......=.++--+..+-.||
T Consensus 82 ~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk 114 (207)
T cd07602 82 ERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKK 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 198
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=39.73 E-value=1.1e+02 Score=30.87 Aligned_cols=93 Identities=6% Similarity=-0.020 Sum_probs=50.9
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceE--EeccccccccccccccceEEEEecccc-eee
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLL--FSTFKFKTNVRHYLQDECALVKIDIYC-RVQ 273 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v--~ss~~~~~~~~~y~~~d~~~i~~~~~~-~v~ 273 (1135)
.....|.++-|..++++. +..|.|.||++|+-.... .+.+ +.|....+....... ..|.|++.. .+.
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~------~~~~~~~kT~v~~~t~nPvfn---EtF~f~i~~~~l~ 82 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSD------GQEISKSKTSIRRGQPDPEFK---ETFVFQVALFQLS 82 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCC------CcceeeccceeecCCCCCcEe---eeEEEECCHHHhC
Confidence 345678888888888888 778899999999875210 0111 122222222221111 235554421 121
Q ss_pred -cCeEEEEEeccccccccceEEEEEecc
Q 001156 274 -GDVVIECVHLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 274 -GDV~i~~~h~~~~~~~~~~mFr~~FnT 300 (1135)
--+.|.+++.+. ..+++.|-++.|.-
T Consensus 83 ~~~L~~~V~~~~~-~~~~~~iG~v~l~~ 109 (138)
T cd08408 83 EVTLMFSVYNKRK-MKRKEMIGWFSLGL 109 (138)
T ss_pred ccEEEEEEEECCC-CCCCcEEEEEEECC
Confidence 245667777754 44556676666643
No 199
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=39.71 E-value=1.8e+02 Score=35.80 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=44.8
Q ss_pred HHhhhHHHHHHHHHHHHHH----------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHH
Q 001156 1018 IQLKSLAEEMQAIIKGLEK----------TLKGFI------SVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQ 1081 (1135)
Q Consensus 1018 iqL~~L~~e~~~l~k~Lek----------~l~~Fl------~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~ee 1081 (1135)
.+++.|..|+..|++.++- +|..|+ ..+..++..|..+-.++++...-| ..
T Consensus 54 ~~~~~L~~eI~~LK~~~q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~ik~lt~lK~~L~~r~n~l-------------N~ 120 (574)
T PF07462_consen 54 EKWNALGEEIEELKKKIQVSLDHYGKYKLKLERLLKKKNKISNSKEQIKKLTILKNKLERRQNLL-------------NN 120 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------cC
Confidence 5788888899988887765 555554 345666677766666666654433 12
Q ss_pred HHHHHHHHHHHHHHHH
Q 001156 1082 VTATLLNFVRLFRKAH 1097 (1135)
Q Consensus 1082 ff~~l~~Fi~~fkka~ 1097 (1135)
-+.+|..|..-|.+-+
T Consensus 121 p~~vl~n~~vfFnKkr 136 (574)
T PF07462_consen 121 PTSVLKNFTVFFNKKR 136 (574)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 3678888888887543
No 200
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=39.54 E-value=83 Score=31.80 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.4
Q ss_pred CCCCCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 197 PPSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 197 ~p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
-+....|.+.-|.-++++. +..|.|.||++||-.
T Consensus 11 ~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~ 45 (136)
T cd08406 11 LPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLL 45 (136)
T ss_pred cCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE
Confidence 3456778888889999998 778889999999874
No 201
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.49 E-value=5.3e+02 Score=27.99 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=77.4
Q ss_pred Chhhh-HHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCcc
Q 001156 937 GKCEQ-ISEFRKNLNTVNSACEEVRNSIK-----LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMT 1010 (1135)
Q Consensus 937 ~~~Eq-v~~l~~~L~~l~~a~~el~~S~~-----L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~T 1010 (1135)
...|. +++|+..|..+...|..+.++.+ .+.+...+-.+|..-+. .. .=-.+|.|++
T Consensus 5 ~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~-----d~--~i~~~l~kF~---------- 67 (200)
T cd07603 5 EQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRD-----DS--LVQNCLNKFI---------- 67 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----cH--HHHHHHHHHH----------
Confidence 33444 78899999999999998877544 33344444444432111 10 0001111111
Q ss_pred chhhhHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--hHHHHH
Q 001156 1011 LMHYLCKIQLKSLAEEMQAIIKGLE----KTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCP--FEQVTA 1084 (1135)
Q Consensus 1011 LLhyLv~iqL~~L~~e~~~l~k~Le----k~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~--~eeff~ 1084 (1135)
.-|+++.+....+...++ ..|..|+..--..+.++...|.++.+.|+..+.-|..-+++-+ .++.-.
T Consensus 68 -------~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~ 140 (200)
T cd07603 68 -------QALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATN 140 (200)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 112222222222232222 2778888888888888999999888888887777765443321 233334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001156 1085 TLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1085 ~l~~Fi~~fkka~~en~ 1101 (1135)
.|..=.+.|..+.=|..
T Consensus 141 ~L~~~Rk~f~~~sldyv 157 (200)
T cd07603 141 ILTATRSCFRHTALDYV 157 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554544
No 202
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.40 E-value=5.6e+02 Score=28.24 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALY 1069 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1069 (1135)
.+++.+..+..-++...+.......-...|..|
T Consensus 17 ~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef 49 (215)
T cd07601 17 YMNQLLQACKRVYDAQNELKSATQALSKKLGEY 49 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333333333333
No 203
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=39.02 E-value=5.2e+02 Score=28.79 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 001156 1051 SVTNLYSVAGRNADALALYFGE 1072 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGE 1072 (1135)
.+...+..+...+..|-..+.+
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~e 110 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQE 110 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 204
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=38.93 E-value=2.2e+02 Score=27.48 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=25.2
Q ss_pred CCCceEEEEEEEEcccC-C-CCCCceeEEEEEec
Q 001156 199 SDTPLLLNCLILRVLPI-Y-GGNGCRPVIRVYGQ 230 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~-~~~gcrP~~~Iy~~ 230 (1135)
....|.+.-|.-++++. + ..+.|.||++||-.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~ 45 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLL 45 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEe
Confidence 34567777777888888 6 67889999999864
No 205
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=38.62 E-value=31 Score=38.00 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=47.1
Q ss_pred eEEeecCCCCCCCchhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCC---CCC
Q 001156 23 VYVFDCCFSTDVLEEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCP---LLP 99 (1135)
Q Consensus 23 Iiam~~~fP~~~~~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p---~p~ 99 (1135)
|||| +|.||.|- +. --..+.+||+ -+|- +-.|||+.+ ||..+... ..-.+| | +.+-. ..-
T Consensus 14 ~ivm-VGLPArGK--s~---ia~kl~ryL~-w~g~-~~~vFn~g~--yRR~~~~~-----~~~~~f-f-~p~n~~~~~~R 76 (222)
T PF01591_consen 14 VIVM-VGLPARGK--SY---IARKLCRYLN-WLGV-KTKVFNVGD--YRRKLSGA-----PQDAEF-F-DPDNEEAKKLR 76 (222)
T ss_dssp EEEE-ESSTTSSH--HH---HHHHHHHHHH-HTT---EEEEEHHH--HHHHHHSS------S-GGG-G-STT-HHHHHHH
T ss_pred EEEE-ECCCCCCH--HH---HHHHHHHHHh-hcCC-Ccceeeccc--ceeccccc-----cccccc-C-CCCChHHHHHH
Confidence 5667 69999984 21 2356888998 4554 799999987 44222110 011122 1 11110 001
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEe
Q 001156 100 LEMIHHFLRSSESWLSLEGQQNVLLMHC 127 (1135)
Q Consensus 100 L~~l~~~c~~~~~wL~~~d~~NVvviHC 127 (1135)
.+.....+.+|..||.. +...|+++=-
T Consensus 77 ~~~a~~~l~dl~~~l~~-~~G~VAI~DA 103 (222)
T PF01591_consen 77 EQIAKEALEDLIEWLQE-EGGQVAIFDA 103 (222)
T ss_dssp HHHHHHHHHHHHHHHHT-S--SEEEEES
T ss_pred HHHHHHHHHHHHHHHhc-CCCeEEEEeC
Confidence 13355678999999997 6666777644
No 206
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=38.54 E-value=1e+02 Score=31.48 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001156 1020 LKSLAEEMQAIIKGLEK--TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGE 1072 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek--~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1072 (1135)
+..|.+.+..|++.|.+ ..-. .+.....+..+.+.|.+++ .+.+.+-.||
T Consensus 73 i~Sl~~~f~~lk~~l~~C~~~~~-Ce~~~~a~~qi~~~f~kl~--~kG~~KAmgE 124 (137)
T smart00188 73 VNSLGEKLKTLRLRLRRCHRFLP-CENKSKAVEQVKNAFNKLQ--EKGVYKAMSE 124 (137)
T ss_pred HHHHHHHHHHHHHHHHHCccccC-ccchhHHHHHHHHHHHHHH--HhHHHHHHHH
Confidence 44566666666666555 1111 1455556778888888887 7777888888
No 207
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.21 E-value=8.9e+02 Score=30.21 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 001156 1053 TNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHE 1098 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~ 1098 (1135)
.+.+++++..+..+..-+++.... |+.+..-+..+.++..
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~------yS~lq~~l~~~~~~l~ 392 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVA------YSELQDNLEEIEKALT 392 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc------HHHHHHHHHHHHHHHH
Confidence 344455555566666666654433 4444444444444443
No 208
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.01 E-value=45 Score=43.82 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=6.4
Q ss_pred CCCHHhHHHHHHh
Q 001156 887 KMPLPDMMVAVLA 899 (1135)
Q Consensus 887 k~~~~ei~~aI~~ 899 (1135)
.++.+-++..+..
T Consensus 83 ~~PpeHLrki~~~ 95 (2365)
T COG5178 83 PIPPEHLRKIQSP 95 (2365)
T ss_pred CCCHHHHHhhhCc
Confidence 3555555554443
No 209
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.84 E-value=2.2e+02 Score=31.16 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 001156 1049 VASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEEN 1100 (1135)
Q Consensus 1049 l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en 1100 (1135)
-..|...+..+.+.+..+-.|.++.-... ...|...|..|...++.+..+.
T Consensus 56 ~~~L~~~L~~lae~~~~i~d~~q~qv~~l-~~~v~epLk~Y~~l~k~~k~~~ 106 (211)
T cd07598 56 NPSLKQGLKNFAECLAALQDYRQAEVERL-EAKVVQPLALYGTICKHARDDL 106 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666532221 2345566667776665554444
No 210
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=37.76 E-value=2.8e+02 Score=24.34 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 001156 1038 LKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHE 1098 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~ 1098 (1135)
|..+..........|++.+..+...+..|...+.-+ +. +.|...+..|...|.+..+
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~-a~---~af~~~~~~~~~~~~~~~~ 65 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGE-AA---DAFQDKFEEWNQAFRQLNE 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSS-TS---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCch-HH---HHHHHHHHHHHHHHHHHHH
Confidence 455556666666777788888888888886555422 22 3444444455444444443
No 211
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=37.66 E-value=2.6e+02 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=20.9
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|.+.-+.-++++. +..+.|.||++|+-++
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~ 32 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG 32 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC
Confidence 4444455557777 6677899999999854
No 212
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.56 E-value=8.1e+02 Score=29.58 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=27.5
Q ss_pred CCCHHhHHHHHHhhcccccc-HHHHHHHHHhC--CChHHHHHhhhcc
Q 001156 887 KMPLPDMMVAVLAMDESVLD-VDQVENLIKFC--PTKEEMELLKNYT 930 (1135)
Q Consensus 887 k~~~~ei~~aI~~lD~~~L~-~d~ve~L~~~~--Pt~eE~~~Lk~~~ 930 (1135)
.++++++|++-..-..-..+ ++.++=|+.++ |.-+|.-+.++..
T Consensus 117 ~ItVedLWeaW~~Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~ 163 (575)
T KOG4403|consen 117 HITVEDLWEAWKESEVHNWTNERTVQWLINDVELPQYVEAFKAKKVD 163 (575)
T ss_pred ceeHHHHHHHHHhhhhhcchHHHHHHHHHHhcccHHHHHHHHhccCC
Confidence 47899999998776655444 45666777765 4444444444433
No 213
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=37.11 E-value=1.9e+02 Score=28.77 Aligned_cols=10 Identities=50% Similarity=0.899 Sum_probs=4.6
Q ss_pred ccccchhhhh
Q 001156 991 FKLDSLLKLT 1000 (1135)
Q Consensus 991 FkLssL~KL~ 1000 (1135)
|+|..|++|.
T Consensus 2 f~L~~vl~lr 11 (141)
T TIGR02473 2 FRLQKLLDLR 11 (141)
T ss_pred ChHHHHHHHH
Confidence 4444444444
No 214
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=37.08 E-value=74 Score=30.23 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=28.6
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1066 LALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELER 1108 (1135)
Q Consensus 1066 l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ek 1108 (1135)
++--|| +++ +-++.+.+-.+++.||++..+.....+.+.
T Consensus 16 ~lllfG--pkK--LP~l~r~~G~~i~~fKk~~~~~~~e~~~~~ 54 (94)
T COG1826 16 ALLVFG--PKK--LPEAGRDLGKAIREFKKAASDVKNELDEEL 54 (94)
T ss_pred HHHhcC--cch--hHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 355688 555 468899999999999999887765444333
No 215
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=37.01 E-value=2.4e+02 Score=28.00 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=25.9
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
....|.+.-|.-++++. +..|.|.||++||-.
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~ 45 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLY 45 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEE
Confidence 34568888888888888 777889999999874
No 216
>PRK10132 hypothetical protein; Provisional
Probab=36.68 E-value=1.7e+02 Score=28.70 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=30.8
Q ss_pred HhhhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1019 QLKSLAEEMQAIIKGLEK------------------TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek------------------~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
|.+.|..||+.|...+|. ++...++.++..+..+.............+-.|-.|+|
T Consensus 13 q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 13 GVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 445555666666655553 44455555555555444444445555556666666665
No 217
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=36.19 E-value=2.5e+02 Score=27.49 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=43.0
Q ss_pred eEEEEEEEEcccC-C-CCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEE
Q 001156 203 LLLNCLILRVLPI-Y-GGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIEC 280 (1135)
Q Consensus 203 l~L~~iil~~iP~-~-~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1135)
|.+.-+.-++++. + ..|.|.||+.|+-++ +.++.|....+.......+ ++.|.+... .-.+.|.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~---------~~~~kT~v~~kt~~P~WnE-~F~f~v~~~---~~~l~~~v 68 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ---------EEVFRTKTVEKSLCPFFGE-DFYFEIPRT---FRHLSFYI 68 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC---------ccEEEeeEEECCCCCccCC-eEEEEcCCC---CCEEEEEE
Confidence 3445455556666 2 346799999998754 2345554433333333322 233333322 23677777
Q ss_pred EeccccccccceEEEEEec
Q 001156 281 VHLEDDLVREEMMFRVMFH 299 (1135)
Q Consensus 281 ~h~~~~~~~~~~mFr~~Fn 299 (1135)
|+.+. ..+...|=++-|.
T Consensus 69 ~d~~~-~~~~~~iG~~~i~ 86 (121)
T cd08401 69 YDRDV-LRRDSVIGKVAIK 86 (121)
T ss_pred EECCC-CCCCceEEEEEEE
Confidence 77753 2233445555444
No 218
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=35.96 E-value=4.3e+02 Score=27.37 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAH 1097 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~ 1097 (1135)
.+..-++.+..++..|...+++-+..|++.+.-|.|..+. -.++...|.+.+..+.+.+
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke--K~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE--KAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999999984431 2466777777776666554
No 219
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=35.74 E-value=7.4e+02 Score=28.59 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.5
Q ss_pred eecccccchhhhhhccc--cCCCccchhhhHH
Q 001156 988 AVGFKLDSLLKLTDTRA--SNSKMTLMHYLCK 1017 (1135)
Q Consensus 988 A~GFkLssL~KL~dtKs--~d~k~TLLhyLv~ 1017 (1135)
..|.+.|.+.+|-+-|. .|.|..|-+|..-
T Consensus 103 ~~~~rpD~vI~LP~~~~i~IDSK~pl~~y~~~ 134 (304)
T PF02646_consen 103 GNGLRPDFVIHLPGGRHIPIDSKFPLEAYERY 134 (304)
T ss_pred CCCcCceEEEEcCCCCEEEEecCCCHHHHHHH
Confidence 35788888888877665 3889999888776
No 220
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=35.58 E-value=3.8e+02 Score=31.62 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=39.3
Q ss_pred HHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCccchhhhHHH----HhhhHHHHHHHHHHHHHH------
Q 001156 967 EIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKI----QLKSLAEEMQAIIKGLEK------ 1036 (1135)
Q Consensus 967 ~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TLLhyLv~i----qL~~L~~e~~~l~k~Lek------ 1036 (1135)
.++.-+|.+||-+-- +..+..|--.+. .++++||+-+..+ ++..+.+++.++++.+..
T Consensus 64 ~~ikq~Lri~Np~~m-----------~~gm~dLfLaqp-fG~~sLlQrifs~~L~~d~~~~~k~i~~le~~i~~~~~~~~ 131 (341)
T PF12825_consen 64 TVIKQILRITNPATM-----------MKGMMDLFLAQP-FGGRSLLQRIFSMVLNDDIKEFEKEIDKLEKKIGDSPEMCE 131 (341)
T ss_pred HHHHHHHhcCCHHHH-----------HHHHHHHHccCC-CCcCcHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHH
Confidence 377888888884421 222333333333 3478999988883 444555555555443322
Q ss_pred HHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVA 1050 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~ 1050 (1135)
+++.|+..-+...+
T Consensus 132 ~ik~~v~~~~~~~~ 145 (341)
T PF12825_consen 132 KIKAFVYAPREEKD 145 (341)
T ss_pred HHHHHHcCCHHHHH
Confidence 56666654444333
No 221
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=35.48 E-value=5e+02 Score=28.73 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 001156 1045 AEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRL 1092 (1135)
Q Consensus 1045 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~ 1092 (1135)
.+.+++..++.|.+..+.....+.-|-+... +....|..|+..
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~-----e~~~~L~~lveA 197 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLENDV-----EQVSQLSALVEA 197 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHH
Confidence 4677777788888777777777766666332 335555555444
No 222
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=35.45 E-value=2.5e+02 Score=27.45 Aligned_cols=88 Identities=8% Similarity=0.078 Sum_probs=49.1
Q ss_pred eEEEEEEEEcccCCCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEEe
Q 001156 203 LLLNCLILRVLPIYGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVH 282 (1135)
Q Consensus 203 l~L~~iil~~iP~~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h 282 (1135)
|.++-|.-++++. ..|.|.||+.|+-.+.. ..+.|.....+......+. +.|.+.. -...+.|+||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~--------~~~kT~v~~~t~nP~Wne~-f~f~~~~---~~~~l~~~v~d 67 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPP--------QKYQSSTQKNTSNPFWDEH-FLFELSP---NSKELLFEVYD 67 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCC--------cEEEeEEEecCCCCccCce-EEEEeCC---CCCEEEEEEEE
Confidence 3455566667776 56789999999975311 1233333222222222222 2333322 14568899999
Q ss_pred ccccccccceEEEEEecccccc
Q 001156 283 LEDDLVREEMMFRVMFHTAFVL 304 (1135)
Q Consensus 283 ~~~~~~~~~~mFr~~FnT~Fi~ 304 (1135)
.+.. ...+.|-++.|...-|.
T Consensus 68 ~~~~-~~~~~lG~~~i~l~~l~ 88 (126)
T cd08678 68 NGKK-SDSKFLGLAIVPFDELR 88 (126)
T ss_pred CCCC-CCCceEEEEEEeHHHhc
Confidence 8753 23567777777665554
No 223
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=35.36 E-value=1.4e+03 Score=31.51 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 001156 101 EMIHHFLRSSESWLSLEGQQ 120 (1135)
Q Consensus 101 ~~l~~~c~~~~~wL~~~d~~ 120 (1135)
..+..+|+.=..||.. |..
T Consensus 919 ~~l~~lle~e~~~l~~-dr~ 937 (1605)
T KOG0260|consen 919 LKLQNLLECEYKKLVR-DRR 937 (1605)
T ss_pred HHHHHHHHHHHHhhhh-hhh
Confidence 3444555555555555 443
No 224
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.35 E-value=2.9e+02 Score=35.23 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
++++.-.+....++.|....+++...+.++|.-|.+- -+.-+..|.+|+..|.....++.
T Consensus 147 ~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~-----Ee~rl~~lk~~l~~~~~~is~~~ 206 (611)
T KOG2398|consen 147 KIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEI-----EESRLSFLKEELWLFANQISESC 206 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555566666667777777788888888888872 24467777788887777666655
No 225
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=35.08 E-value=6.2e+02 Score=27.93 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPAR---CPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~---~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
+..|+.++....+.|..+...+++-+=-|-..... -.++.|+.+-..|...+-+...++.
T Consensus 146 L~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~ 208 (224)
T cd07591 146 LPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQ 208 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666655444333222211100 0234455555555554444444433
No 226
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=35.04 E-value=6.3e+02 Score=28.37 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEK----------TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNF 1089 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek----------~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~F 1089 (1135)
+..|..++..+.+...+ ....-+..|+.-...+......+.....++ .+||++....+..++=..+.+-
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~-~~l~~~~~~~~~~~l~~~l~ea 132 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV-ESLNENGDQLPSEDLQRALAEA 132 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcccCCCCHHHHHHHHHHH
Confidence 45555555555544333 333333444444444444555555445554 3556533333444444444444
Q ss_pred HHHHH
Q 001156 1090 VRLFR 1094 (1135)
Q Consensus 1090 i~~fk 1094 (1135)
-++++
T Consensus 133 ~~mL~ 137 (264)
T PF06008_consen 133 QRMLE 137 (264)
T ss_pred HHHHH
Confidence 43333
No 227
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=35.00 E-value=1.6e+02 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=24.8
Q ss_pred CCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 200 DTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 200 ~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
...|.+.-|.-++++. +..+.|.||++|+-.
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~ 46 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELL 46 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEE
Confidence 4567777777788888 677889999999975
No 228
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=34.87 E-value=2.3e+02 Score=28.14 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEe
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYG 229 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~ 229 (1135)
+....|.+.-+.-++++. +..|.|.||++|+-
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l 44 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWL 44 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEE
Confidence 345678888888889888 77788999999986
No 229
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.83 E-value=6.3e+02 Score=27.51 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1034 LEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARC---PFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1034 Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~---~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
+-..|..|+..--.++.++++.|.++...++..+.-|.-=+++. ..++.-..|..=.+.|..+.-+..
T Consensus 90 l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv 160 (202)
T cd07606 90 LNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLM 160 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33377888888777888888888888888887777666543322 233444555555566666555544
No 230
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=34.82 E-value=54 Score=33.42 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001156 1085 TLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1085 ~l~~Fi~~fkka~~en~k 1102 (1135)
.-..|+..|.+-..+-++
T Consensus 19 ~R~eyLTGFhKRK~~Rrk 36 (137)
T PF09805_consen 19 ARREYLTGFHKRKKQRRK 36 (137)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788888765554443
No 231
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=34.55 E-value=4.5e+02 Score=28.96 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=57.1
Q ss_pred HHHHhccccCCCCCCCcceecccccchhhhhhcccc---CCCccchhhhHHHHhhhHHHHHHHHHHHHHH----------
Q 001156 970 KKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRAS---NSKMTLMHYLCKIQLKSLAEEMQAIIKGLEK---------- 1036 (1135)
Q Consensus 970 ~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~---d~k~TLLhyLv~iqL~~L~~e~~~l~k~Lek---------- 1036 (1135)
++.+..|+-+..++..|.|-.--=+...+|++++.. .-+.++|.-|.... .++ ++++..++.|+.
T Consensus 58 ~~M~~~g~~lg~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l-~~~-k~i~k~RKkLe~rRLdyD~~ks 135 (215)
T cd07593 58 LVMINHGEEFPQDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSL-AEM-KEYHSARKKLESRRLAYDAALT 135 (215)
T ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666555544422111335556655432 11223333333211 121 344445555544
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Q 001156 1037 TLK---GFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRL 1092 (1135)
Q Consensus 1037 ~l~---~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~ 1092 (1135)
+++ .=-..++.+++..+..|.+..+.....+.-|-+... ++...|.+|+..
T Consensus 136 k~~kak~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~-----e~~~~L~~lv~A 189 (215)
T cd07593 136 KSQKAKKEDSRLEEELRRAKAKYEESSEDVEARMVAIKESEA-----DQYRDLTDLLDA 189 (215)
T ss_pred HHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHH
Confidence 111 111346777777777787777777777776666332 345556666544
No 232
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.27 E-value=4e+02 Score=32.42 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=18.5
Q ss_pred hccccCCCccchhhhHH---H---HhhhHHHHHHHHHHHHHH
Q 001156 1001 DTRASNSKMTLMHYLCK---I---QLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1001 dtKs~d~k~TLLhyLv~---i---qL~~L~~e~~~l~k~Lek 1036 (1135)
++++-..+..=|||.++ | +++....|-..+-+.|++
T Consensus 345 ei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~ 386 (622)
T COG5185 345 EIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDK 386 (622)
T ss_pred HHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777777 2 333333333444455544
No 233
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=34.24 E-value=2.3e+02 Score=27.38 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=26.0
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
....|.++-|.-++++. +..+.|.||++||-..
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~ 47 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLP 47 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEcc
Confidence 44667777788888888 7777899999999753
No 234
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=34.16 E-value=1.5e+02 Score=31.11 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--Ch---HHHHHHHHHHHHHHH--HHHHHHHH
Q 001156 1046 EVEVASVTNLYSVAGRNADALALYFGEDPARC--PF---EQVTATLLNFVRLFR--KAHEENVK 1102 (1135)
Q Consensus 1046 ~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~--~~---eeff~~l~~Fi~~fk--ka~~en~k 1102 (1135)
.....+|..+.+.+..+|-+|+.-.+.++... .. ..+|.-+...++.|+ .|++.++.
T Consensus 71 ~d~~~eLkkL~~sll~nfleLl~~l~~~P~~~~~ki~~i~~L~~NmhhllNeyRPhQARetLi~ 134 (162)
T PF05983_consen 71 VDRKKELKKLNKSLLLNFLELLDILSKNPSQYERKIEDIRLLFINMHHLLNEYRPHQARETLIM 134 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS---CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44556677777777777777777777776532 12 233444444455555 45555443
No 235
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.13 E-value=6.7e+02 Score=29.22 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1020 LKSLAEEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
++.|.+.|.....+|+. .|...++.+...+..|.+.+..+++.+..+..-=
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544 5666666666666666677766666666555443
No 236
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=34.09 E-value=2.7e+02 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=17.0
Q ss_pred EEEEEEEEcccCCCCCCceeEEEEEecC
Q 001156 204 LLNCLILRVLPIYGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 204 ~L~~iil~~iP~~~~~gcrP~~~Iy~~~ 231 (1135)
.+.-|.=++++.. +.|.||++|+-++
T Consensus 3 ~v~vi~a~~l~~~--~~~dpyv~v~~~~ 28 (117)
T cd08383 3 RLRILEAKNLPSK--GTRDPYCTVSLDQ 28 (117)
T ss_pred EEEEEEecCCCcC--CCCCceEEEEECC
Confidence 3333334455544 7899999999864
No 237
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=33.91 E-value=1.7e+02 Score=31.53 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEecCCCcCc---hhhHHHHHHHHhh
Q 001156 104 HHFLRSSESWLSLEGQQNVLLMHCERGGWPV---LAFMLAGLLLYRK 147 (1135)
Q Consensus 104 ~~~c~~~~~wL~~~d~~NVvviHCk~Gk~gr---tg~~iaa~L~y~~ 147 (1135)
..+++.+..++..+...+ ++=|..|| .| .|+++||+|+-.+
T Consensus 72 ~~~~~~v~~~i~~~~~~~--v~vnlsgG-~R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 72 PSILRQMSDIIKEEREPR--VIINLSGG-MRILILILLLLAILVKTR 115 (203)
T ss_pred HHHHHHHHHHHHhcccCc--EEEEcCCC-chHHHHHHHHHHHhcccc
Confidence 566777778887734445 44456676 58 6777788877553
No 238
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=33.89 E-value=1.9e+02 Score=28.08 Aligned_cols=14 Identities=7% Similarity=-0.024 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001156 1082 VTATLLNFVRLFRK 1095 (1135)
Q Consensus 1082 ff~~l~~Fi~~fkk 1095 (1135)
|-++|.+-...|.+
T Consensus 57 Fh~ILDd~~~~l~~ 70 (105)
T PF11214_consen 57 FHSILDDTESKLND 70 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 239
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=33.75 E-value=5.2e+02 Score=28.37 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1041 FISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1041 Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
=+..+......|..+...++...+++..-|-+ +.++|=..+...+..+..+.....
T Consensus 40 ~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~-----P~~~Fe~~~K~l~~~i~~~~~~I~ 95 (215)
T PF07083_consen 40 NIKDAKKDRAELNKLKKAIDDKRKEIKKEYSK-----PIKEFEAKIKELIAPIDEASDKID 95 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666555544 455555556666655555554443
No 240
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.64 E-value=5.1e+02 Score=32.24 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=5.9
Q ss_pred HhhhHHHHHHHHHH
Q 001156 1019 QLKSLAEEMQAIIK 1032 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k 1032 (1135)
.+..|.+++++++.
T Consensus 72 ~~~~l~~~l~~l~~ 85 (525)
T TIGR02231 72 RLAELRKQIRELEA 85 (525)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 241
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.12 E-value=61 Score=41.88 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSE 1105 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e 1105 (1135)
+|.+=++.|.++.+.|.++.+++.+....-.--.-+.+.. +.+=+..+..-++.++...++..++.+
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~--~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAERE--FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777776666655543322112221222 222255566667777777766654443
No 242
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.07 E-value=2.2e+02 Score=35.90 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=29.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCC
Q 001156 1019 QLKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYS----VAGRNADALALYFGEDPAR 1076 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~----~~~~~~~~l~~yFGEd~~~ 1076 (1135)
+++.|.+++++.+. +++.|-++.......++..+. .-.+.+++|...|+-+...
T Consensus 220 e~d~lk~e~~~~~~----~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 220 EFDKLKKEGKADKQ----KIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD 277 (555)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCccc
Confidence 34444455544333 344444444444444444444 4455799999999976654
No 243
>PRK05849 hypothetical protein; Provisional
Probab=33.04 E-value=2.8e+02 Score=36.38 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCCCCCCChHH-HHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVAS-------VTNLYSVAGRNADALALYFGEDPARCPFEQ-VTATLLNFVRLFR 1094 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~-------L~~~~~~~~~~~~~l~~yFGEd~~~~~~ee-ff~~l~~Fi~~fk 1094 (1135)
.++.|+..++.-+.. +...+..+.+.+.++.+++|.+ .++ ||-++.++...+.
T Consensus 573 ~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~-----~dDvf~L~~~El~~~~~ 633 (783)
T PRK05849 573 DAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGIS-----REDLSHLDIKDLLNLYS 633 (783)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC-----hhheeeecHHHHHHHHh
Confidence 455555555544433 3455566666677777777752 233 4455555555443
No 244
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.00 E-value=4.7e+02 Score=32.61 Aligned_cols=76 Identities=13% Similarity=0.311 Sum_probs=46.9
Q ss_pred cccccchhhhhhcccc--CCCccchhhhHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 990 GFKLDSLLKLTDTRAS--NSKMTLMHYLCK----IQLKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNA 1063 (1135)
Q Consensus 990 GFkLssL~KL~dtKs~--d~k~TLLhyLv~----iqL~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~ 1063 (1135)
||.++. .||+.-|+- ..+.+.=+|+-+ ++|+.|..+++-..++|+..|-+.++.-..+.-.|...+-.+....
T Consensus 13 g~~~d~-~kLcFdk~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~al 91 (705)
T KOG2307|consen 13 GFYIDE-SKLCFDKTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDAL 91 (705)
T ss_pred CCCCCc-cccccChhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHH
Confidence 454432 345543432 223444455544 7899999999999999988777777776666555555555555554
Q ss_pred HHH
Q 001156 1064 DAL 1066 (1135)
Q Consensus 1064 ~~l 1066 (1135)
+.+
T Consensus 92 n~i 94 (705)
T KOG2307|consen 92 NKI 94 (705)
T ss_pred HHH
Confidence 444
No 245
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=32.87 E-value=3e+02 Score=29.78 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1081 QVTATLLNFVRLFRKAHEENVKQSELERKKAEK 1113 (1135)
Q Consensus 1081 eff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~r 1113 (1135)
++...-.+|+.++.+-++...++.|.|+...++
T Consensus 127 ~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~ 159 (192)
T PF09727_consen 127 EDMAQGDDFTNLLEKERERLKQQLEQEKAQQKK 159 (192)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777777777777777776644433
No 246
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=32.82 E-value=85 Score=37.12 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=14.3
Q ss_pred CCcEEEEEecCCCcCchhhHHH
Q 001156 119 QQNVLLMHCERGGWPVLAFMLA 140 (1135)
Q Consensus 119 ~~NVvviHCk~Gk~grtg~~ia 140 (1135)
.+.-|+|||..|- .||+.+.+
T Consensus 230 ~~~~Vlvh~~dGw-Drt~q~~s 250 (353)
T PF06602_consen 230 EGSSVLVHCSDGW-DRTSQLSS 250 (353)
T ss_dssp T--EEEEECTTSS-SHHHHHHH
T ss_pred cCceEEEEcCCCC-cccHHHHH
Confidence 4567889998665 79976544
No 247
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.77 E-value=5.3e+02 Score=31.74 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCccchhhhHH
Q 001156 942 ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TLLhyLv~ 1017 (1135)
+++|+.+++.-.. .....+..|..|+.----|+. -.+++..||.+.|.. .++|=|-|.+
T Consensus 336 F~dL~~R~K~Q~q------~~~~~r~ri~~i~e~v~eLqk---------~~ad~~~KI~~~k~r--~~~Ls~RiLR 394 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQ------EVKQHRIRINAIGERVTELQK---------HHADAVAKIEEAKNR--HVELSHRILR 394 (508)
T ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh---------hhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 6777777764322 223334444444432222332 356777888887754 5677777777
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.74 E-value=3.4e+02 Score=28.36 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1043 SVAEVEVASVTNLYSVAGRNADALAL 1068 (1135)
Q Consensus 1043 ~~a~~~l~~L~~~~~~~~~~~~~l~~ 1068 (1135)
+++...+..|......+...+..|..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777666655
No 249
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.64 E-value=5.3e+02 Score=32.44 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFG 1071 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1071 (1135)
++..+.++..|..+.++-.....++..|..
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~ 328 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLD 328 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 344444444444444444444555555554
No 250
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.62 E-value=2.2e+02 Score=36.00 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCC-cEEEEEecCCCcCch
Q 001156 105 HFLRSSESWLSLEGQQ-NVLLMHCERGGWPVL 135 (1135)
Q Consensus 105 ~~c~~~~~wL~~~d~~-NVvviHCk~Gk~grt 135 (1135)
++++.+.+|+.. +.- |.+++|=..|- |.|
T Consensus 23 ~~~~~L~~~i~~-~~i~~a~Lf~Gp~G~-GKT 52 (585)
T PRK14950 23 HVVQTLRNAIAE-GRVAHAYLFTGPRGV-GKT 52 (585)
T ss_pred HHHHHHHHHHHh-CCCceEEEEECCCCC-CHH
Confidence 455667788887 543 44556555555 455
No 251
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.54 E-value=1.1e+03 Score=29.50 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CChHH-HH-HHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPAR-CPFEQ-VT-ATLLNFVRLFRKAHEE 1099 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~-~~~ee-ff-~~l~~Fi~~fkka~~e 1099 (1135)
-++.|...+....=.....|.+.-..|.+...|.-|-... .++++ .+ ..+.+.+..++++.+.
T Consensus 419 ~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~~~~~eli~el~k~k~s 484 (593)
T KOG2460|consen 419 YFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLPLLLLELISELQKRKES 484 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccchHHHHHHHHHHHHHHh
Confidence 4556665555554455556666666677777776552221 12332 22 3445555555544433
No 252
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.44 E-value=1.9e+02 Score=24.90 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
+++.+.+.+.|.+..+++++.+++|+..|
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666555
No 253
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=6.2e+02 Score=32.32 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCccchhhhHH
Q 001156 948 NLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 948 ~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TLLhyLv~ 1017 (1135)
.|..+..||+.||.+.+.-++=..+-.+..+|-..-.|..-.=|.|++|.+..+.++.|-=..=+.||..
T Consensus 150 vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~~ 219 (797)
T KOG2211|consen 150 VLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVSN 219 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 4567788899998888665555544443333333223333456788888888877775432233344444
No 254
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=32.12 E-value=3.8e+02 Score=27.40 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=43.6
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|+++=|.-++++. +. +.|.||++|+-++. .+.|.....+......++ +.|.+... ..-|.|+||
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~----------~~kT~vvk~t~nP~WnE~-f~f~i~~~---~~~l~~~V~ 68 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQ----------KVKTRVIKKNLNPVWNEE-LTLSVPNP---MAPLKLEVF 68 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECCE----------EEEeeeEcCCCCCeeccc-EEEEecCC---CCEEEEEEE
Confidence 3444444456666 54 78999999987642 233322222222222222 23333322 456888999
Q ss_pred eccccccccceEEEEEecc
Q 001156 282 HLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT 300 (1135)
+.+. ....+.|-++.|..
T Consensus 69 D~d~-~~~dd~iG~a~i~l 86 (145)
T cd04038 69 DKDT-FSKDDSMGEAEIDL 86 (145)
T ss_pred ECCC-CCCCCEEEEEEEEH
Confidence 9864 23345666666643
No 255
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=32.02 E-value=2.9e+02 Score=27.06 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecc--cceeec-C
Q 001156 200 DTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDI--YCRVQG-D 275 (1135)
Q Consensus 200 ~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~--~~~v~G-D 275 (1135)
...|.++-|.-++++. + .+.|.||++||-.... ....-+.|.....+......+ .|.|+. .-.+.+ -
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~-----~~~~~~kT~v~~~~~nP~wnE---~F~f~~~~~~~l~~~~ 82 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDP-----QKTTKRKTKVVRKTRNPTFNE---MLVYDGLPVEDLQQRV 82 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCC-----ccCCceeCCccCCCCCCCccc---EEEEecCChHHhCCCE
Confidence 3567888888888888 7 7889999999875311 000112222222222222222 244443 112343 3
Q ss_pred eEEEEEeccccccccceEEEEEecccc
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFHTAF 302 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~FnT~F 302 (1135)
+.|.+++.+. ..+.+.|=++.|+-.-
T Consensus 83 L~~~V~d~d~-~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 83 LQVSVWSHDS-LVENEFLGGVCIPLKK 108 (122)
T ss_pred EEEEEEeCCC-CcCCcEEEEEEEeccc
Confidence 5577888753 3345566666665443
No 256
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.00 E-value=9e+02 Score=30.15 Aligned_cols=39 Identities=8% Similarity=-0.051 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001156 1038 LKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPAR 1076 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1076 (1135)
+.+-.+..++++++..+..+.+++.+++|+.-||-.-..
T Consensus 614 i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 614 LREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Confidence 334444445566677777888888899999999975443
No 257
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=31.97 E-value=1.3e+02 Score=33.00 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=33.1
Q ss_pred HHHHHHHHhccccCCCCCC----Ccceecccccchhhhhh-ccccCCCccchhhhHH------HHhhhHHHHHHHHHHH
Q 001156 966 KEIMKKILYLGNTLNQGTA----RGSAVGFKLDSLLKLTD-TRASNSKMTLMHYLCK------IQLKSLAEEMQAIIKG 1033 (1135)
Q Consensus 966 ~~lL~~IL~iGN~lN~g~~----rg~A~GFkLssL~KL~d-tKs~d~k~TLLhyLv~------iqL~~L~~e~~~l~k~ 1033 (1135)
+++++-+|.=.+.|+.... --.|.|| +..+.+|.. .+....+.++++-||+ .++...++.+.+..++
T Consensus 27 rrvv~ELLVElHLl~~n~~F~yDplfAlGl-vt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~ 104 (214)
T TIGR03060 27 RRVVDELLVELHLLSHQSDFKYDPLFALGL-VTVFDRFMEGYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKG 104 (214)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhH-HHHHHHHHcCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3445555554555544331 1124444 233334332 3445567889999998 3444444444444433
No 258
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=31.80 E-value=1.9e+02 Score=29.01 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=15.6
Q ss_pred EEEEcccCCCCCCceeEEEEEecC
Q 001156 208 LILRVLPIYGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 208 iil~~iP~~~~~gcrP~~~Iy~~~ 231 (1135)
|.-++++....+.|.||++||-..
T Consensus 6 i~A~~L~~~~~g~~dPyv~v~~~~ 29 (137)
T cd08675 6 LECRDLALKSNGTCDPFARVTLNY 29 (137)
T ss_pred EEccCCCcccCCCCCcEEEEEEec
Confidence 333445443346799999999863
No 259
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.75 E-value=5.6e+02 Score=33.19 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1048 EVASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1048 ~l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
-++.|..+|..+.+..++|..||
T Consensus 330 ylR~L~~Lys~~~k~~~~L~~~~ 352 (763)
T KOG3745|consen 330 YLRDLYGLYSSTLKLSKDLVDYF 352 (763)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 36678889999999999999994
No 260
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=31.59 E-value=35 Score=44.75 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=7.0
Q ss_pred ccHHHHHHHHHhCC
Q 001156 905 LDVDQVENLIKFCP 918 (1135)
Q Consensus 905 L~~d~ve~L~~~~P 918 (1135)
++.-.+.+|+...|
T Consensus 252 ~~lp~m~NL~Rl~~ 265 (2365)
T COG5178 252 YMLPAMHNLLRLMP 265 (2365)
T ss_pred cCcHHHHHHHhccc
Confidence 34445555555444
No 261
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=31.53 E-value=3.3e+02 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=20.8
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|.+.-+.-++++. +..+.|.||++|+-.+
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~ 32 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVN 32 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECC
Confidence 4444455567777 6667899999999864
No 262
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=31.38 E-value=2.6e+02 Score=27.31 Aligned_cols=79 Identities=10% Similarity=-0.050 Sum_probs=39.4
Q ss_pred EEEcccCCCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEEecccccc
Q 001156 209 ILRVLPIYGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVHLEDDLV 288 (1135)
Q Consensus 209 il~~iP~~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~~~~~ 288 (1135)
..+.++. ..+.|.||++|+-++. .+.|.....+......+. +.|.+...+.-...+.|+||+.+.. .
T Consensus 4 ~a~~L~~-~~g~~Dpyv~v~~~~~----------~~kT~v~~~~~nP~Wne~-f~f~~~~~~~~~~~l~~~v~d~~~~-~ 70 (127)
T cd08373 4 SLKNLPG-LKGKGDRIAKVTFRGV----------KKKTRVLENELNPVWNET-FEWPLAGSPDPDESLEIVVKDYEKV-G 70 (127)
T ss_pred EeeCCcc-cCCCCCCEEEEEECCE----------eeecceeCCCcCCcccce-EEEEeCCCcCCCCEEEEEEEECCCC-C
Confidence 3445555 4568999999998642 123332222222222222 2233332222234577788887532 2
Q ss_pred ccceEEEEEecc
Q 001156 289 REEMMFRVMFHT 300 (1135)
Q Consensus 289 ~~~~mFr~~FnT 300 (1135)
..+.|-++.|.-
T Consensus 71 ~d~~iG~~~~~l 82 (127)
T cd08373 71 RNRLIGSATVSL 82 (127)
T ss_pred CCceEEEEEEEh
Confidence 335666666553
No 263
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=31.34 E-value=2.9e+02 Score=26.39 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=40.2
Q ss_pred eEEEEEEEEcccC-CC------CCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecC
Q 001156 203 LLLNCLILRVLPI-YG------GNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGD 275 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~------~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GD 275 (1135)
|.+.-+.-++++. +. .+.|.||++|+-++ .++.|.....+......+ . +.|...-.-...
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~----------~~~kT~~~~~t~~P~W~e-~--f~~~v~~~~~~~ 69 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----------QTFKSKVIKENLNPKWNE-V--YEAVVDEVPGQE 69 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC----------EeEEccccCCCCCCcccc-e--EEEEeCCCCCCE
Confidence 3444444455665 32 35699999999864 244444332222211112 1 233221112335
Q ss_pred eEEEEEeccccccccceEEEEEecc
Q 001156 276 VVIECVHLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 276 V~i~~~h~~~~~~~~~~mFr~~FnT 300 (1135)
|.|++|+.+.. ..+.|-++.|..
T Consensus 70 l~i~v~d~~~~--~~~~iG~~~i~l 92 (121)
T cd08391 70 LEIELFDEDPD--KDDFLGRLSIDL 92 (121)
T ss_pred EEEEEEecCCC--CCCcEEEEEEEH
Confidence 67777877532 334455555443
No 264
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.28 E-value=9.3e+02 Score=34.22 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhcc
Q 001156 942 ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLG 976 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iG 976 (1135)
+.+++.+|..+....++|+.+.+++.+++-++..+
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~ 266 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITES 266 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhh
Confidence 66788888888889999999999999999876544
No 265
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=31.00 E-value=2.9e+02 Score=33.36 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001156 1084 ATLLNFVRLFRKAHEEN 1100 (1135)
Q Consensus 1084 ~~l~~Fi~~fkka~~en 1100 (1135)
..|..|...|..++...
T Consensus 335 ~~L~~~Y~~F~~aY~~L 351 (412)
T PF04108_consen 335 EQLCEFYEGFLSAYDSL 351 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 266
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=30.90 E-value=3.8e+02 Score=25.94 Aligned_cols=86 Identities=5% Similarity=-0.048 Sum_probs=42.5
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEE
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECV 281 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~ 281 (1135)
|.+.-+.-++++. +..+.+.||++|+..+. .+.++.|.....+......+ .+.|.+... -..-+.|+||
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-------~~~~~kT~~~~~t~~P~Wne-~f~f~i~~~--~~~~L~i~v~ 72 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNG-------KRRIAKTRTIYDTLNPRWDE-EFELEVPAG--EPLWISATVW 72 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCC-------CeeeecccEecCCCCCcccc-eEEEEcCCC--CCCEEEEEEE
Confidence 3444455567777 66677899999986431 12344444332222222222 223333222 1234667778
Q ss_pred eccccccccceEEEEEec
Q 001156 282 HLEDDLVREEMMFRVMFH 299 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~Fn 299 (1135)
+.+.. .....|-++.|.
T Consensus 73 d~d~~-~~~~~iG~~~i~ 89 (126)
T cd04043 73 DRSFV-GKHDLCGRASLK 89 (126)
T ss_pred ECCCC-CCCceEEEEEEe
Confidence 77532 234455555544
No 267
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=30.81 E-value=5.7e+02 Score=29.29 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001156 1049 VASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1049 l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
+..+.++-+.+.+.++.|++-|
T Consensus 261 LEkI~SREK~lNnqL~~l~q~f 282 (384)
T KOG0972|consen 261 LEKIASREKSLNNQLASLMQKF 282 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 268
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.66 E-value=6.7e+02 Score=31.27 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAH 1097 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~ 1097 (1135)
++..-+.++..+..++......+.+.|...|+-||-...++. .|+...+.+.=..|.++.
T Consensus 135 k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir-~ELl~l~~~LP~~~~~i~ 194 (507)
T PF05600_consen 135 KCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIR-EELLELVKELPSLFDEIV 194 (507)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhH-HHHHHHHHhhHHHHHHHH
Confidence 355567777777788888888889999999999997655542 344444444333343333
No 269
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=30.60 E-value=2.3e+02 Score=32.10 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=4.2
Q ss_pred CCccccccc
Q 001156 864 KPLHWSKID 872 (1135)
Q Consensus 864 k~~hw~kLD 872 (1135)
-+-.|.+-|
T Consensus 123 vP~GW~~Sd 131 (297)
T PF07174_consen 123 VPAGWVESD 131 (297)
T ss_pred ccCCccccc
Confidence 345555433
No 270
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.60 E-value=9.4e+02 Score=29.19 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=26.2
Q ss_pred HhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCC
Q 001156 1019 QLKSLAEEMQAIIKGLEK------TLKGFISVAEVEVASVTNLYS---VAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek------~l~~Fl~~a~~~l~~L~~~~~---~~~~~~~~l~~yFGEd~ 1074 (1135)
+|+++.+++..+...|.. ++..=++..+..+..|+.... ..-..+-..+.++|.++
T Consensus 67 ~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 67 QLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 344455555555444433 444455555555555554442 12222233344556655
No 271
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=30.36 E-value=4.9e+02 Score=25.23 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1049 VASVTNLYSVAGRNADALALYFGEDPA-RCPFEQVTATLLNFVRLFRKAHEENVKQSELER 1108 (1135)
Q Consensus 1049 l~~L~~~~~~~~~~~~~l~~yFGEd~~-~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ek 1108 (1135)
+..+...|..-.-.-+++-..||+... .-+.+|+...|..=++-.++..+-+.|+.+.+.
T Consensus 35 l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE 95 (99)
T PF13758_consen 35 LLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAE 95 (99)
T ss_pred HHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333345778888999654 246789998888888877777777766665444
No 272
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=30.35 E-value=5e+02 Score=28.92 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.3
Q ss_pred chHHHH
Q 001156 963 IKLKEI 968 (1135)
Q Consensus 963 ~~L~~l 968 (1135)
..|..|
T Consensus 40 ~~L~~L 45 (237)
T cd07657 40 STLGSL 45 (237)
T ss_pred HHHHHH
Confidence 333333
No 273
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=30.12 E-value=3.3e+02 Score=26.37 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=20.2
Q ss_pred eEEEEEEEEcccC-CC--CCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YG--GNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~--~~gcrP~~~Iy~~~ 231 (1135)
|.+.-+.-++++. +. .+.|.||++|+-+.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~ 34 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA 34 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC
Confidence 4455555566776 55 67899999999753
No 274
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=30.09 E-value=3.6e+02 Score=26.42 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=23.6
Q ss_pred CceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 201 TPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 201 ~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
..|++.-+.-+.++. +..+.|.||++|+-.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~ 43 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLI 43 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEE
Confidence 557777777778887 666789999999975
No 275
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=30.06 E-value=3.8e+02 Score=33.35 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001156 1085 TLLNFVRLFRKAHEENVKQSELERKKAEKEAEMEKAKG 1122 (1135)
Q Consensus 1085 ~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~~~~~~ 1122 (1135)
+|.+.=..|.++..+++++++.|-++-+++...+..+.
T Consensus 108 tLL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a 145 (510)
T PF10154_consen 108 TLLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKA 145 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567888888888888877665555444444433
No 276
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.92 E-value=7.4e+02 Score=32.62 Aligned_cols=27 Identities=4% Similarity=-0.092 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1040 GFISVAEVEVASVTNLYSVAGRNADAL 1066 (1135)
Q Consensus 1040 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1066 (1135)
....+++...+.|++.++++++..+++
T Consensus 536 ~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 536 KLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 277
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=29.78 E-value=4.6e+02 Score=25.15 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=45.9
Q ss_pred eEEEEEEEEcccC-CC----CCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeE
Q 001156 203 LLLNCLILRVLPI-YG----GNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVV 277 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~----~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~ 277 (1135)
|.++-+.-++++. +. ++.|.||++|+-+. ..|.|...+.+......+. ..|.+.... ..--|.
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~----------~~~kT~v~~~t~nPvWne~-f~f~v~~~~-~~~~L~ 70 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR----------RVFRTSWRRHTLNPVFNER-LAFEVYPHE-KNFDIQ 70 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC----------EeEeeeeecCCCCCcccce-EEEEEeCcc-CCCEEE
Confidence 5666677777776 32 13499999998753 2344443333333333332 223332111 112367
Q ss_pred EEEEeccccccccceEEEEEeccc
Q 001156 278 IECVHLEDDLVREEMMFRVMFHTA 301 (1135)
Q Consensus 278 i~~~h~~~~~~~~~~mFr~~FnT~ 301 (1135)
|+||+.+. ..+.+.|=++.|.-.
T Consensus 71 ~~V~D~d~-~~~dd~IG~~~l~L~ 93 (108)
T cd04039 71 FKVLDKDK-FSFNDYVATGSLSVQ 93 (108)
T ss_pred EEEEECCC-CCCCcceEEEEEEHH
Confidence 78888763 334566777766533
No 278
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.62 E-value=6.1e+02 Score=34.45 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001156 1040 GFISVAEVEVASVTNLYSVAGRNADALALYFG 1071 (1135)
Q Consensus 1040 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1071 (1135)
..+.....++....+....+.+..++...-|-
T Consensus 327 ~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~ 358 (1293)
T KOG0996|consen 327 YILYESRAKIAEMQEELEKIEEGLKDENEKFD 358 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 33445566677777777778888887777776
No 279
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.48 E-value=7.6e+02 Score=28.41 Aligned_cols=52 Identities=6% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCccchhhhHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1007 SKMTLMHYLCK--------------IQLKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSV 1058 (1135)
Q Consensus 1007 ~k~TLLhyLv~--------------iqL~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~ 1058 (1135)
...||.+|++. -+..++.+.+..+...|...++..++..+.++..+...+..
T Consensus 118 ~D~ti~D~vAd~ra~TPtaaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~ 183 (319)
T PF02601_consen 118 TDFTIADFVADLRAPTPTAAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQL 183 (319)
T ss_pred CCchHHHHHHHhhCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35689999888 13344455555555555556666666666666655554443
No 280
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.36 E-value=2.1e+02 Score=33.09 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1038 LKGFISVAEVEVASVTNLY-SVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQ 1103 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~-~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~ 1103 (1135)
+.+|.++|..++.++...- ++.+...++++.||--++....+..+...|...+++...-.++..++
T Consensus 52 le~~~~~a~~~~~~~~~~~~~e~es~l~r~~effVI~Pv~idP~gIi~R~~~Ll~~~~dr~~~~v~r 118 (368)
T COG4046 52 LEKMENDAMKKVVELAVPRRDEAESTLERYAEFFVIPPVDIDPAGIIDRLRHLLEMGEDRFRKLVRR 118 (368)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhheecCcccCCccchHHHHHHHHHhhhHHHHHHHHH
Confidence 5567777777777665555 67778889999999999988888888888988888888777666543
No 281
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=29.05 E-value=4.3e+02 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1080 EQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1080 eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
+.+-+.+..+.+.|.+..+|+.+
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH
Confidence 34445556666677777766543
No 282
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=28.96 E-value=3.2e+02 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred CCCCceEEEEEEEEcccC-C--CCCCceeEEEEEecC
Q 001156 198 PSDTPLLLNCLILRVLPI-Y--GGNGCRPVIRVYGQD 231 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~--~~~gcrP~~~Iy~~~ 231 (1135)
+....|.+.-+.-++++. + ..+||.||++||-..
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 456678888888888887 5 357899999999653
No 283
>PRK11376 hlyE hemolysin E; Provisional
Probab=28.90 E-value=3.9e+02 Score=29.26 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1025 EEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALAL 1068 (1135)
Q Consensus 1025 ~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1068 (1135)
.++++.++.+.+.|.++-..|..++..|+.++......|.++..
T Consensus 38 ~eLQeAIdeIDRaMlgYqG~AK~~Ld~IRsLnSdAr~kYqecV~ 81 (303)
T PRK11376 38 QTFDETIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQ 81 (303)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 45667777777788999999999999999999988877776654
No 284
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.68 E-value=3.8e+02 Score=35.95 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek 1036 (1135)
++++..|+..|++.|..
T Consensus 406 lKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666777777666543
No 285
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=28.52 E-value=2e+02 Score=34.90 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001156 1039 KGFISVAEVEVASVTNLYSVAGRNADALALYFGE 1072 (1135)
Q Consensus 1039 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1072 (1135)
+.|+..-+..+..|.+.++++.+.|..+-++.-+
T Consensus 291 QqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~ 324 (424)
T PF03915_consen 291 QQFLKLQEDLLSDLKEDLKKASETFALVEQCTEE 324 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567667777777888888888877777665433
No 286
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=28.31 E-value=3.6e+02 Score=32.02 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATL 1086 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l 1086 (1135)
++-+.+++...++.||+.... +-.+++++..-.++.+..+.+.++.++-+++++..+-.+.|..+
T Consensus 138 ~~y~~~~~~~~~e~lEe~~g~--~iT~e~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~ 202 (379)
T COG1775 138 VKYWHNELDKFKELLEELTGN--EITEEKLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVM 202 (379)
T ss_pred HhHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHh
Confidence 344445555555555551100 11344556666778888888899999999999887766655543
No 287
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=28.14 E-value=1.3e+02 Score=28.79 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHHhhh---CCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCC
Q 001156 44 MGGIVAQLQDH---FPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLSLEGQQ 120 (1135)
Q Consensus 44 i~~V~~~L~~~---h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~~~d~~ 120 (1135)
.+++.++|+.. .++ +.+|+..++.. |.. .+.| |.-..|+..+...+.....++.. +..
T Consensus 6 ~~el~~~l~~~~~~~~~-~~~iiDvR~~e-----------f~~--ghip----gAi~ip~~~~~~~~~~~~~~~~~-~~~ 66 (113)
T cd01443 6 PEELVALLENSDSNAGK-DFVVVDLRRDD-----------YEG--GHIK----GSINLPAQSCYQTLPQVYALFSL-AGV 66 (113)
T ss_pred HHHHHHHHhCCccccCC-cEEEEECCchh-----------cCC--Cccc----CceecchhHHHHHHHHHHHHhhh-cCC
Confidence 45677777652 123 48888887632 111 1111 11112444444333333344444 444
Q ss_pred cEEEEEecCCCcCchhh
Q 001156 121 NVLLMHCERGGWPVLAF 137 (1135)
Q Consensus 121 NVvviHCk~Gk~grtg~ 137 (1135)
..||+||..|+ .|+..
T Consensus 67 ~~iv~~C~~~g-~rs~~ 82 (113)
T cd01443 67 KLAIFYCGSSQ-GRGPR 82 (113)
T ss_pred CEEEEECCCCC-cccHH
Confidence 68999997554 46543
No 288
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=28.09 E-value=6.2e+02 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001156 1080 EQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1080 eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
+.+..-+..|+..|....+...
T Consensus 90 ~~Vl~Pl~~~~s~f~~i~k~I~ 111 (211)
T cd07588 90 DQVLGPLTAYQSQFPEVKKRIA 111 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776555443
No 289
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.99 E-value=4.9e+02 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001156 1030 IIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGE 1072 (1135)
Q Consensus 1030 l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1072 (1135)
+..||-..+..-++.....+.+|......+...++.+...|.+
T Consensus 4 La~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~ 46 (92)
T PF14712_consen 4 LAEGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKE 46 (92)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677778888888888888888888888888777765
No 290
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.99 E-value=3.8e+02 Score=35.19 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=17.5
Q ss_pred HHHHHHHhcchHHHHHHHHHhccccCC
Q 001156 954 SACEEVRNSIKLKEIMKKILYLGNTLN 980 (1135)
Q Consensus 954 ~a~~el~~S~~L~~lL~~IL~iGN~lN 980 (1135)
..|+.+.....|...|..|=.+-+.+-
T Consensus 340 ~~vq~ll~~~d~~~ALdlI~t~q~~L~ 366 (951)
T KOG2115|consen 340 STVQLLLSTQDFVGALDLIKTIQELLK 366 (951)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 446667777777777776666555553
No 291
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=27.95 E-value=1.5e+02 Score=32.30 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=37.7
Q ss_pred HHHHHHHHhccccCCCCCCC----cceecccccchhhhhh-ccccCCCccchhhhHH------HHhhhHHHHHHHHHHHH
Q 001156 966 KEIMKKILYLGNTLNQGTAR----GSAVGFKLDSLLKLTD-TRASNSKMTLMHYLCK------IQLKSLAEEMQAIIKGL 1034 (1135)
Q Consensus 966 ~~lL~~IL~iGN~lN~g~~r----g~A~GFkLssL~KL~d-tKs~d~k~TLLhyLv~------iqL~~L~~e~~~l~k~L 1034 (1135)
+++++-+|.=.+.|+..... -.|.|| +..+.+|.. .+....+..+++-||+ .++...++.+.+..+++
T Consensus 25 rrvv~ELLVE~HLl~~n~~f~yD~lfAlGl-vt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~ 103 (206)
T PLN03060 25 SNVIQELLVQQHLMRYNATYKYDPIFALGF-VTVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQ 103 (206)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhH-HHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 34455555545555443311 124454 233344432 3445567889999998 34444444444444333
Q ss_pred HH-HHHHHHH
Q 001156 1035 EK-TLKGFIS 1043 (1135)
Q Consensus 1035 ek-~l~~Fl~ 1043 (1135)
.. .+..|+.
T Consensus 104 s~~~l~~~l~ 113 (206)
T PLN03060 104 SASGIADFNS 113 (206)
T ss_pred CHHHHHHHHh
Confidence 22 4555554
No 292
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=27.82 E-value=9.9e+02 Score=27.61 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001156 1083 TATLLNFVRLFRKAHEEN 1100 (1135)
Q Consensus 1083 f~~l~~Fi~~fkka~~en 1100 (1135)
|.-+..=++.+.+.+...
T Consensus 230 ~~~~~~elre~~k~ik~l 247 (294)
T COG1340 230 FRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 293
>PHA00728 hypothetical protein
Probab=27.78 E-value=64 Score=31.70 Aligned_cols=14 Identities=43% Similarity=0.861 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCCCC
Q 001156 1062 NADALALYFGEDPA 1075 (1135)
Q Consensus 1062 ~~~~l~~yFGEd~~ 1075 (1135)
.|.+|-.||||.+-
T Consensus 79 EfarLP~YFgEePv 92 (151)
T PHA00728 79 EFARLPAYFGEEPV 92 (151)
T ss_pred HHhhchhhhCCccH
Confidence 47788899999774
No 294
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=27.47 E-value=2e+02 Score=31.41 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNF 1089 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~F 1089 (1135)
.|.+....+.+.|..+.++|+|-++. .++-+...|..+
T Consensus 74 ~L~~Ai~~tg~~y~~IG~~faeQpk~-Dl~pl~d~L~~Y 111 (210)
T cd07668 74 DLNDAITEAGKTYEEIASLVAEQPKK-DLHFLMETNHEY 111 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHH
Confidence 57788888899999999999998875 344344444443
No 295
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=27.45 E-value=1.5e+03 Score=29.57 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Q 001156 1059 AGRNADALALYFGEDPARCPFEQVTATLLNFVR 1091 (1135)
Q Consensus 1059 ~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~ 1091 (1135)
+++.-+++-+-|-|-++...+.+-+..|..|.+
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 333334444445555554455566677777765
No 296
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=27.16 E-value=6.3e+02 Score=31.12 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1054 NLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1054 ~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
.++......+..+..||-+-.. ..+..+..|..|+...-..+++...
T Consensus 316 ~~q~~~e~~le~l~~~~E~~a~--~~~~~~~~L~~f~~~~~~lwd~h~~ 362 (473)
T PF14643_consen 316 ELQSEFEEELEKLDKSFEELAK--QTEAQSEDLFKFFQEAAQLWDEHRK 362 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544222 2344555566666555555554443
No 297
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=27.13 E-value=7.3e+02 Score=29.08 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001156 692 FYAFPPQSSSSVSLFSQGDTPPRTPLPPPPPL-----------PLLKSTPLPSPSPAPPVTSFGESNNESVLNRGPPPPP 760 (1135)
Q Consensus 692 ~~~pppp~~~p~p~~~~~~~~~~ppppppppp-----------p~~~~~~~ppppppPp~~~~~pppp~p~~~~~ppppp 760 (1135)
.+.+..+.-+||-...+.++.+.-.+|-.=|+ +.-.++++-+|-|+|..+.-..+|.++..-...+.++
T Consensus 207 ~~~~sG~~GPPP~~~~Q~~P~P~m~~P~s~P~N~~~~P~~~~Q~~Gqppppmpp~PpP~~t~~G~pP~pp~~~qq~p~pp 286 (498)
T KOG4849|consen 207 GTSVSGRSGPPPLMMQQVRPTPLMSQPTSLPSNLNQAPQMRLQINGQPPPPMPPAPPPQQTMLGNPPLPPQQIQQQPQPP 286 (498)
T ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcCcCcccCcCcCCCCCCCCCCCCCCccccCCCCCCCchhhccCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCC
Q 001156 761 PPPPPIPSSSSRQNSGIVLPPPPPPPP-------WNSGNVVVAPAK 799 (1135)
Q Consensus 761 ppppp~p~~~~~~~~~~ppp~pppppp-------pp~~~~~~~ppP 799 (1135)
-+-++-|...-++-=.-++|--.+|+| +|+......|+|
T Consensus 287 ~~~ppRP~m~l~phl~gppPga~pPaph~NpaffpPP~~~s~GppP 332 (498)
T KOG4849|consen 287 MGQPPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPPPQLGSMGPPP 332 (498)
T ss_pred CCCCCCcccccCcccCCCCCCCCCCCcccCcccCCCCCcCcCCCCC
No 298
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=27.08 E-value=3.9e+02 Score=25.83 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=25.0
Q ss_pred CCCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 199 SDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 199 ~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
....|.++-+.-++++. +..+.|.||++|+-.
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~ 45 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLL 45 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEe
Confidence 34567777788888888 666789999999863
No 299
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=26.91 E-value=9.2e+02 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=17.4
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1022 SLAEEM-QAIIKGLEKTLKGFISVAEVEVASVTNLYSVA 1059 (1135)
Q Consensus 1022 ~L~~e~-~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~ 1059 (1135)
.|.+.+ ....+.|.+.+..|+..++.....|....+.+
T Consensus 47 ~L~~~v~~~~ad~l~~~~~~~~~~i~~~~~~v~~~~~~l 85 (286)
T PF11727_consen 47 DLVEKVRNETADYLVKETEDFLGDIKLHKEQVDHRVERL 85 (286)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444 33444444455555555554444444444433
No 300
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=26.81 E-value=2.1e+02 Score=27.37 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKK 1110 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk 1110 (1135)
.++.+|..+...--.|++|.-+-..+ ..-|.-|.+=+...+.|++-...-+++=+.|
T Consensus 33 aVqsLF~~lt~mH~~LL~~i~~~ee~---R~~~E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 33 AVQSLFQTLTAMHPQLLKYIQEQEEK---RVYYEGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666766666677777777652211 1235556666666666666554433333333
No 301
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=26.75 E-value=2.5e+02 Score=30.65 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNF 1089 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~F 1089 (1135)
.|.+....+.+.|..+.++|+|-+.. .+.-+...|..+
T Consensus 74 ~L~~Av~~tG~~y~~IG~~faeQpk~-D~~pl~d~L~~Y 111 (207)
T cd07669 74 ALNNAISHTGRTYEAVGEMFAEQPKN-DLFQMLDTLSLY 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh-hhhHHHHHHHHH
Confidence 57888888999999999999998765 233344444443
No 302
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=26.72 E-value=87 Score=29.67 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1067 ALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKK 1110 (1135)
Q Consensus 1067 ~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk 1110 (1135)
+..||- ++ +-++.+.|-.+++.|+++.++..+..+++.++
T Consensus 19 LlvfGP--~K--LP~lar~lGk~i~~fkk~~~~~~~e~~~~~~~ 58 (90)
T PRK14857 19 LLVFGP--KK--LPEIGRSLGKTLKGFQEASKEFENEIKREMAE 58 (90)
T ss_pred HHHcCc--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456664 33 46788999999999999998876544444444
No 303
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.61 E-value=9.1e+02 Score=26.77 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1041 FISVAEVEVASVTNLYSVAGRNAD-ALALYFGEDPAR---CPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1041 Fl~~a~~~l~~L~~~~~~~~~~~~-~l~~yFGEd~~~---~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
-+..|+.++...++.|..+...+. +|-.+|.- ... -.++.|+.+=..|..+.-+.+.++..
T Consensus 146 KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~-r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~ 210 (225)
T cd07590 146 KLEQAEKALAAARADFEKQNIKLLEELPKFYNG-RTDYFQPCFEALIKSQVLYYSQSTKIFTQLAP 210 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666543 34444432 211 13555666655666655555555443
No 304
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=26.51 E-value=43 Score=33.68 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=0.0
Q ss_pred cchhhhHH----HHhhhHHHHHHHHHHHHHHHHHH
Q 001156 1010 TLMHYLCK----IQLKSLAEEMQAIIKGLEKTLKG 1040 (1135)
Q Consensus 1010 TLLhyLv~----iqL~~L~~e~~~l~k~Lek~l~~ 1040 (1135)
.--+||.+ +.|+.|.+|++...+.|+..|-+
T Consensus 14 d~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~ 48 (133)
T PF06148_consen 14 DVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIE 48 (133)
T ss_dssp -----------------------------------
T ss_pred CHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 67888888888877777664433
No 305
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=26.48 E-value=4.3e+02 Score=31.20 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 001156 1078 PFEQVTATLLNFVRLFRK 1095 (1135)
Q Consensus 1078 ~~eeff~~l~~Fi~~fkk 1095 (1135)
-+++|+.++..|+..|++
T Consensus 322 lf~~l~~W~~~~l~~lr~ 339 (341)
T PF12825_consen 322 LFDELIAWIEKILKFLRQ 339 (341)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 367777888777777664
No 306
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.31 E-value=8.6e+02 Score=26.38 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek 1036 (1135)
|+..+.++..++..|++
T Consensus 4 l~~~E~~~~~l~~~l~k 20 (200)
T cd07603 4 LEQVEADVSELETRLEK 20 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554444
No 307
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.21 E-value=3.1e+02 Score=33.90 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccC--CCccchhhhHH----------
Q 001156 950 NTVNSACEEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASN--SKMTLMHYLCK---------- 1017 (1135)
Q Consensus 950 ~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d--~k~TLLhyLv~---------- 1017 (1135)
.++...++.|++.+.+-..++.++.|-..|..|...=.-..+....+++|.++++.. ....+--||-.
T Consensus 60 ~~v~aLs~Rl~~TrnW~VAlKsLIliH~ll~~G~~~f~~~l~~~~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~ 139 (491)
T KOG0251|consen 60 SCVHALSERLNKTRNWTVALKALILIHRLLKEGDPSFEQELLSRNLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLE 139 (491)
T ss_pred HHHHHHHHHhCCCcceeehHHHHHHHHHHHhcCcHHHHHHHHhcccccchhhhhcccccccchhhHHHHHHHHHHHHHHH
Q ss_pred -----------------------HH-hhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001156 1018 -----------------------IQ-LKSLAEEMQAIIKGLEK----------TLKGFISVAEVEV-ASVTNLYSVAGRN 1062 (1135)
Q Consensus 1018 -----------------------iq-L~~L~~e~~~l~k~Lek----------~l~~Fl~~a~~~l-~~L~~~~~~~~~~ 1062 (1135)
.. ...+.+.+..+..-|+. .-+..+..|..-| +++-.+|..+...
T Consensus 140 ~~~~~~~d~~~~~~~~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~g 219 (491)
T KOG0251|consen 140 CYRVLGFDIEKVKRGKEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDG 219 (491)
T ss_pred HHHHhccccccccCcccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 001156 1063 ADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHE 1098 (1135)
Q Consensus 1063 ~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~ 1098 (1135)
+..|++-|-|=... ...+.+.++..|..++++-.+
T Consensus 220 i~~Llekffem~~~-~a~~al~iykr~~~q~e~L~~ 254 (491)
T KOG0251|consen 220 IINLLEKFFEMSKH-DAIKALDIYKRFLSQTEKLSE 254 (491)
T ss_pred HHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHHH
No 308
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=26.08 E-value=3.8e+02 Score=26.61 Aligned_cols=29 Identities=21% Similarity=-0.015 Sum_probs=21.7
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|+++-+.-++++. +..|.|.||++|+-++
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~ 32 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN 32 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC
Confidence 4455555667777 7778899999999864
No 309
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=25.98 E-value=2.2e+02 Score=26.48 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=14.7
Q ss_pred CCCcEEEEEecCCCcCchhhHHHHH
Q 001156 118 GQQNVLLMHCERGGWPVLAFMLAGL 142 (1135)
Q Consensus 118 d~~NVvviHCk~Gk~grtg~~iaa~ 142 (1135)
+...-||++|..|. |.+.+.++.
T Consensus 65 ~~~~~iv~yc~~~~--~~~~~~~~~ 87 (113)
T PF00581_consen 65 DKDKDIVFYCSSGW--RSGSAAAAR 87 (113)
T ss_dssp TTTSEEEEEESSSC--HHHHHHHHH
T ss_pred cccccceeeeeccc--ccchhHHHH
Confidence 45557899995443 666666553
No 310
>PF15165 REC114-like: Meiotic recombination protein REC114-like
Probab=25.74 E-value=1.1e+02 Score=33.69 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=9.7
Q ss_pred ccceEEEEEeccc
Q 001156 289 REEMMFRVMFHTA 301 (1135)
Q Consensus 289 ~~~~mFr~~FnT~ 301 (1135)
.+..|||+||--.
T Consensus 91 ~~sRmFRvQF~G~ 103 (243)
T PF15165_consen 91 NESRMFRVQFQGD 103 (243)
T ss_pred CcceEEEEEeCCC
Confidence 3578999999643
No 311
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=25.71 E-value=3e+02 Score=31.99 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001156 1091 RLFRKAHEENVKQSELERKKA 1111 (1135)
Q Consensus 1091 ~~fkka~~en~k~~e~Ekkk~ 1111 (1135)
+.|+.+.+++.-+.++|++|.
T Consensus 163 kK~E~~k~Kl~~qLeeEk~RH 183 (561)
T KOG1103|consen 163 KKAEIAKDKLEMQLEEEKKRH 183 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554
No 312
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=25.67 E-value=2.4e+02 Score=27.07 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=36.5
Q ss_pred CCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEEeccccccccceEEEEE
Q 001156 218 GNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVHLEDDLVREEMMFRVM 297 (1135)
Q Consensus 218 ~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~~~~~~~~~mFr~~ 297 (1135)
.|.|.||++|+-++ +.++.|.....+......+ +..|.+... -.-.+.|+|++.+.. ....|-++.
T Consensus 10 ~G~~dPYv~v~v~~---------~~~~kT~v~~~t~nP~Wne-~f~f~v~~~--~~~~l~i~v~d~~~~--~d~~iG~~~ 75 (111)
T cd04052 10 TGLLSPYAELYLNG---------KLVYTTRVKKKTNNPSWNA-STEFLVTDR--RKSRVTVVVKDDRDR--HDPVLGSVS 75 (111)
T ss_pred CCCCCceEEEEECC---------EEEEEEeeeccCCCCccCC-ceEEEecCc--CCCEEEEEEEECCCC--CCCeEEEEE
Confidence 35599999999864 2355554432222222222 222333211 122377888887643 456677776
Q ss_pred ecc
Q 001156 298 FHT 300 (1135)
Q Consensus 298 FnT 300 (1135)
|.-
T Consensus 76 v~L 78 (111)
T cd04052 76 ISL 78 (111)
T ss_pred ecH
Confidence 653
No 313
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=25.58 E-value=8.5e+02 Score=32.01 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 001156 1078 PFEQVTATLLNFVRLFRKA 1096 (1135)
Q Consensus 1078 ~~eeff~~l~~Fi~~fkka 1096 (1135)
..+.|+.+|.+-...|++|
T Consensus 261 s~~~lL~~L~EDf~Iye~a 279 (839)
T PF06070_consen 261 SVDSLLEMLTEDFEIYEDA 279 (839)
T ss_pred cHHHHHHHHHHHHHHHHhh
Confidence 5678888888888888887
No 314
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=25.50 E-value=1.2e+03 Score=30.43 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHh--cchHHHHHHHHHhccccCCCCCCCcceeccc-ccchhhhhhccccCCCccchhhhHHH-------
Q 001156 949 LNTVNSACEEVRN--SIKLKEIMKKILYLGNTLNQGTARGSAVGFK-LDSLLKLTDTRASNSKMTLMHYLCKI------- 1018 (1135)
Q Consensus 949 L~~l~~a~~el~~--S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFk-LssL~KL~dtKs~d~k~TLLhyLv~i------- 1018 (1135)
|..+-..++++-. -.-+..|...||.. ||.-++.....|-+ +++|.++..++.. .-+|.|+--+
T Consensus 779 l~gfg~V~~~lg~r~kpylpqi~stiL~r---Lnnksa~vRqqaadlis~la~Vlktc~e---e~~m~~lGvvLyEylge 852 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRVKPYLPQICSTILWR---LNNKSAKVRQQAADLISSLAKVLKTCGE---EKLMGHLGVVLYEYLGE 852 (1172)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHhccH---HHHHHHhhHHHHHhcCc
Confidence 3444555666655 45577888888874 55544322222332 4667777666542 3344444442
Q ss_pred ----HhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC-CCCCChHHHHHHHHHHHH
Q 001156 1019 ----QLKSLAEEMQAIIKGLEK-TLKGFISVAEVE-VASVTNLYSVAGRNADALALYFGED-PARCPFEQVTATLLNFVR 1091 (1135)
Q Consensus 1019 ----qL~~L~~e~~~l~k~Lek-~l~~Fl~~a~~~-l~~L~~~~~~~~~~~~~l~~yFGEd-~~~~~~eeff~~l~~Fi~ 1091 (1135)
-|..+...|.+|...+.. +|..=+...--. .--|++.++++.++.-+|+.-.|.. +...+..|++.|-++.+.
T Consensus 853 eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle 932 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE 932 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 233333333443332211 122212221111 2345677777777777776666643 335678899999888887
Q ss_pred HHHHHHHHHH
Q 001156 1092 LFRKAHEENV 1101 (1135)
Q Consensus 1092 ~fkka~~en~ 1101 (1135)
+++.-.++.+
T Consensus 933 lLkahkK~iR 942 (1172)
T KOG0213|consen 933 LLKAHKKEIR 942 (1172)
T ss_pred HHHHHHHHHH
Confidence 7765444443
No 315
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=25.48 E-value=71 Score=37.18 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=3.2
Q ss_pred hccccCC
Q 001156 974 YLGNTLN 980 (1135)
Q Consensus 974 ~iGN~lN 980 (1135)
..|+++.
T Consensus 187 ~~~~~l~ 193 (321)
T PF07946_consen 187 KAGDYLE 193 (321)
T ss_pred hhhhhee
Confidence 4455443
No 316
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=25.41 E-value=7.1e+02 Score=32.19 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1082 VTATLLNFVRLFRKAHEENVKQSE 1105 (1135)
Q Consensus 1082 ff~~l~~Fi~~fkka~~en~k~~e 1105 (1135)
+..-+..|.+.+++...|.+|+.|
T Consensus 408 ~~Rem~~fwKk~er~~rd~rKK~E 431 (1185)
T KOG0388|consen 408 IYREMYGFWKKNERNMRDLRKKAE 431 (1185)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455556666665555555554433
No 317
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.26 E-value=35 Score=40.50 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccCCC
Q 001156 942 ISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYLGNTLNQ 981 (1135)
Q Consensus 942 v~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~iGN~lN~ 981 (1135)
.+.|...++.+...|.+=-+.-.+-.+|+.|+.+||..|.
T Consensus 432 ~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~nt 471 (578)
T KOG0436|consen 432 GEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNT 471 (578)
T ss_pred cchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhh
Confidence 5668888888888888888888899999999999998776
No 318
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=25.26 E-value=2.9e+02 Score=31.03 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1039 KGFISVAEVEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1039 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
+..++.+....+.=++.|+++.+...-=++|+.|+.
T Consensus 256 ~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENr 291 (341)
T KOG3876|consen 256 KNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENR 291 (341)
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 344566666666666677777666666666666644
No 319
>smart00721 BAR BAR domain.
Probab=25.23 E-value=8.8e+02 Score=26.13 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEE 1099 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~e 1099 (1135)
+..++++++..++.|..+...+..-+..|-.... +.|..+|..|+..-..-+.+
T Consensus 172 l~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~----~~~~~~l~~~~~aq~~y~~~ 225 (239)
T smart00721 172 LAKAEEELRKAKQEFEESNAQLVEELPQLVASRV----DFFVNCLQALIEAQLNFHRE 225 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HhHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777655555544444433221 22444555555544444433
No 320
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=25.16 E-value=9.4e+02 Score=26.40 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCCCChH-HHHHHHHHHHHHHHH
Q 001156 1025 EEMQAIIKGLEK---TLKGFISVAEVEVASVTNLYSVAGRNADALALYF-----GEDPARCPFE-QVTATLLNFVRLFRK 1095 (1135)
Q Consensus 1025 ~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF-----GEd~~~~~~e-eff~~l~~Fi~~fkk 1095 (1135)
+.++.++..|++ .+++.+..+..-++.+...+.....-...|..|. +.-......- +.++-|.+|+..+..
T Consensus 2 ~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d 81 (207)
T cd07635 2 ERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEE 81 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHhc
Q 001156 1096 AH--------EENVKQSELERKKAEKEAEMEKAK 1121 (1135)
Q Consensus 1096 a~--------~en~k~~e~Ekkk~~rea~~~~~~ 1121 (1135)
.+ ..+....+.=++.-.++.+..|++
T Consensus 82 ~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~ 115 (207)
T cd07635 82 QREIMALNVTETLIKPLERFRKEQLGAVKEEKKK 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 321
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=25.09 E-value=7.5e+02 Score=25.26 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1055 LYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQS 1104 (1135)
Q Consensus 1055 ~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~ 1104 (1135)
.+......|.++..-|-|.... .-++|-..+..|+..|+.-..+..++.
T Consensus 115 il~Qt~~QfeettkqfiEqqq~-qReE~Q~qld~fleefKS~Q~e~akkf 163 (165)
T TIGR02131 115 ILKQAQEQFEETTKQFIEEQKK-QREEAQHQLDAFLEEFKSKQKEFAKKF 163 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777888888775443 457788888889888887766665544
No 322
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=25.01 E-value=4.1e+02 Score=26.59 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceE--EeccccccccccccccceEEEEeccc-ceee
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLL--FSTFKFKTNVRHYLQDECALVKIDIY-CRVQ 273 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v--~ss~~~~~~~~~y~~~d~~~i~~~~~-~~v~ 273 (1135)
+....|.+.-+..+.++. + .++|.||++|+-.... +.+ ..|.....+...... + .|.|++. -.+.
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~-------~~~~~~kT~v~~~~~nP~fn-E--~F~f~i~~~~l~ 80 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHN-------KVVKTKKTEVVDGAASPSFN-E--SFSFKVTSRQLD 80 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECC-------EEeeeeecccEeCCCCCccc-c--eEEEECCHHHhC
Confidence 345678888888889988 6 7889999999854210 111 111111112221111 2 2444432 1222
Q ss_pred -cCeEEEEEeccccccccceEEEEEecc
Q 001156 274 -GDVVIECVHLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 274 -GDV~i~~~h~~~~~~~~~~mFr~~FnT 300 (1135)
--+.|.+++.+. +.+++.|=++.+.-
T Consensus 81 ~~~L~~~V~~~~~-~~~~~~lG~v~ig~ 107 (137)
T cd08409 81 TASLSLSVMQSGG-VRKSKLLGRVVLGP 107 (137)
T ss_pred ccEEEEEEEeCCC-CCCcceEEEEEECC
Confidence 346677777754 34556777777663
No 323
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.00 E-value=4.3e+02 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALAL 1068 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1068 (1135)
.+..|+...+..++........+....+....
T Consensus 68 nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~ 99 (148)
T COG2882 68 NYQQFISQLEVAIDQQQSQLSKLRKQVEQKRE 99 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444444444433333333
No 324
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=24.99 E-value=9.1e+02 Score=26.48 Aligned_cols=33 Identities=42% Similarity=0.551 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1085 TLLNFVRLFRKAHEENVKQSELERKKAEKEAEMEK 1119 (1135)
Q Consensus 1085 ~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~~~ 1119 (1135)
.|..|...|+.-|.-. +.+++.+++..+++.+.
T Consensus 90 DleRFT~Lyr~dH~~e--~~e~~ak~~l~~aE~~~ 122 (207)
T PF05546_consen 90 DLERFTELYRNDHENE--QAEEEAKEALEEAEEKV 122 (207)
T ss_pred HHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHH
Confidence 4778888888766422 34444555545544433
No 325
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=24.93 E-value=4.8e+02 Score=25.52 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.2
Q ss_pred EEcccC-CCCCCceeEEEEEecC
Q 001156 210 LRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 210 l~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
-++++. +..|.|.||++|+.++
T Consensus 12 A~~L~~~d~~g~~dPyv~v~~~~ 34 (126)
T cd04046 12 AEGLSKQDSGGGADPYVIIKCEG 34 (126)
T ss_pred CcCCCCCCCCCCcCccEEEEECC
Confidence 335566 5667899999998764
No 326
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=24.91 E-value=8.9e+02 Score=26.09 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=31.4
Q ss_pred HhhhccCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhc
Q 001156 925 LLKNYTGDKENLGKCEQISEFRKNLNTVNSACEEVRNSIKLKEIMKKILYL 975 (1135)
Q Consensus 925 ~Lk~~~g~~~~L~~~Eqv~~l~~~L~~l~~a~~el~~S~~L~~lL~~IL~i 975 (1135)
.++.|......|+-.-|+..+..+++.+..+|+.-..+-- -.|+.-|+.+
T Consensus 55 vl~~YnqkqQ~l~w~iQv~amdtkreaIdka~~AAi~sav-~~IlsGV~t~ 104 (195)
T PRK15361 55 IMRSYNVEKQRLSWELQVNVLQTQMKTIDEAFRASMITAG-GAMLSGVLTI 104 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHh
Confidence 3555554444455555577888889999888887554433 3456666544
No 327
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.87 E-value=1.9e+03 Score=29.81 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=7.3
Q ss_pred ccHHHHHHHHhhhCC
Q 001156 42 SYMGGIVAQLQDHFP 56 (1135)
Q Consensus 42 n~i~~V~~~L~~~h~ 56 (1135)
|.-.+|+..++.++|
T Consensus 103 ~~~~~~la~~~~h~G 117 (1049)
T KOG0307|consen 103 NASEEVLATKSKHTG 117 (1049)
T ss_pred CcchHHHhhhcccCC
Confidence 444455555554444
No 328
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=24.82 E-value=8.4e+02 Score=25.73 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCC------CCChHHHHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRNADALALYFGE--DPA------RCPFEQVTATLLNFVRL 1092 (1135)
Q Consensus 1051 ~L~~~~~~~~~~~~~l~~yFGE--d~~------~~~~eeff~~l~~Fi~~ 1092 (1135)
.|.+...+.--..-.|+.|||- |+. +.++++||..+..-.+.
T Consensus 49 NlN~i~~r~~l~~~kl~sylGleKD~Se~~S~~K~Pf~~~~k~~~~ifke 98 (163)
T PF03233_consen 49 NLNEIVGRNWLKLSKLLSYLGLEKDPSEGLSKSKSPFESFFKDLSKIFKE 98 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccCCccccccCCCcHHHHHHHHHHHHHh
Confidence 3333444444456678899993 332 34677888755555443
No 329
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=24.58 E-value=4.7e+02 Score=22.75 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=44.3
Q ss_pred EEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEEecc
Q 001156 206 NCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVHLE 284 (1135)
Q Consensus 206 ~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h~~ 284 (1135)
.-+..++++. ...+-|.+|++|+-.+ ...+.|............. .+.|+........+.|++|+.+
T Consensus 4 ~i~~~~~l~~~~~~~~~~~~v~v~~~~---------~~~~~T~~~~~~~~P~w~~---~~~~~~~~~~~~~l~i~v~~~~ 71 (102)
T cd00030 4 TVIEARNLPAKDLNGKSDPYVKVSLGG---------KQKFKTKVVKNTLNPVWNE---TFEFPVLDPESDTLTVEVWDKD 71 (102)
T ss_pred EEEeeeCCCCcCCCCCCCcEEEEEecc---------CceEecceeCCCCCCcccc---eEEEEccCCCCCEEEEEEEecC
Confidence 3344445555 4555699999998865 1234444332222222222 2444443324566788888887
Q ss_pred ccccccceEEEEEecccc
Q 001156 285 DDLVREEMMFRVMFHTAF 302 (1135)
Q Consensus 285 ~~~~~~~~mFr~~FnT~F 302 (1135)
... ....|-++.+...-
T Consensus 72 ~~~-~~~~ig~~~~~l~~ 88 (102)
T cd00030 72 RFS-KDDFLGEVEIPLSE 88 (102)
T ss_pred CCC-CCceeEEEEEeHHH
Confidence 432 23566666655443
No 330
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.46 E-value=9.2e+02 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1038 LKGFISVAEVEVASVTNLYSVAGRNADALA 1067 (1135)
Q Consensus 1038 l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1067 (1135)
|..=+..++.+...|......++....++-
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445444444444444443
No 331
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=24.46 E-value=4.7e+02 Score=24.92 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=14.9
Q ss_pred cHHHHHHHHhhhCCCCcEEEEEeccC
Q 001156 43 YMGGIVAQLQDHFPDASFMVFNFREG 68 (1135)
Q Consensus 43 ~i~~V~~~L~~~h~~~~y~V~NLs~~ 68 (1135)
..+++..+|.... + +..|+.++..
T Consensus 5 s~~~l~~~~~~~~-~-~~~iiDvR~~ 28 (113)
T cd01531 5 SPAQLKGWIRNGR-P-PFQVVDVRDE 28 (113)
T ss_pred CHHHHHHHHHcCC-C-CEEEEEcCCc
Confidence 3456667665432 3 4888988874
No 332
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=24.34 E-value=3e+02 Score=29.77 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=48.2
Q ss_pred HHHHHHHHHhccCCCCCCCC---CceEEEEE---EEEcccCCCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccc
Q 001156 181 LRYLQYISRRNLGSDWPPSD---TPLLLNCL---ILRVLPIYGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVR 254 (1135)
Q Consensus 181 ~RYv~Yf~~ll~~~~~~p~~---~~l~L~~i---il~~iP~~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~ 254 (1135)
-||++++.+.+.|-+..|.. +-|+|++- ++.. -..-+..|. ||++-+ |=.++++. ..|
T Consensus 55 A~~~~~~~~~~~gieIhp~A~IG~g~fIdHg~GvVIge-ta~IGddv~----I~~gVT----------LGgtg~~~-g~R 118 (194)
T COG1045 55 ARLLSSLSRFLFGIEIHPGAKIGRGLFIDHGTGVVIGE-TAVIGDDVT----IYHGVT----------LGGTGKES-GKR 118 (194)
T ss_pred HHHHHHHHHhhcceeeCCCCeECCceEEcCCceEEEcc-eeEECCCeE----EEcceE----------ecCCCCcC-CCC
Confidence 89999999998887765543 46777753 2221 112334554 555421 11233332 244
Q ss_pred cccccceEEEEecccceeecCeEE
Q 001156 255 HYLQDECALVKIDIYCRVQGDVVI 278 (1135)
Q Consensus 255 ~y~~~d~~~i~~~~~~~v~GDV~i 278 (1135)
+-+-.++ +.|..+..|-|||.|
T Consensus 119 hPtIg~~--V~IGagAkILG~I~I 140 (194)
T COG1045 119 HPTIGNG--VYIGAGAKILGNIEI 140 (194)
T ss_pred CCccCCC--eEECCCCEEEcceEE
Confidence 4455555 888999999999887
No 333
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=5.7e+02 Score=26.55 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001156 1086 LLNFVRLFRKAH 1097 (1135)
Q Consensus 1086 l~~Fi~~fkka~ 1097 (1135)
...||..+..++
T Consensus 69 yq~fI~~Le~~I 80 (148)
T COG2882 69 YQQFISQLEVAI 80 (148)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 334
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=24.15 E-value=5.3e+02 Score=31.32 Aligned_cols=59 Identities=19% Similarity=0.053 Sum_probs=36.7
Q ss_pred HHHHhcchHHHHHHHHHhccccCCCCCCCcceecccccchhhhhhc----cccCCCccchhhhHH
Q 001156 957 EEVRNSIKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDT----RASNSKMTLMHYLCK 1017 (1135)
Q Consensus 957 ~el~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dt----Ks~d~k~TLLhyLv~ 1017 (1135)
..+..|....-+.-..|++|||.-..... .+-..=+.+.||.+. ++.|++.++-|-++.
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~D~~c--i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARRDDIC--IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 33444555556777889999987543211 111223457777764 667888888888777
No 335
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=24.07 E-value=3.1e+02 Score=28.94 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=49.9
Q ss_pred chhhhcccHHHHHHHHhhhCCCCcEEEEEeccCCccccccccccccCCeeecCCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 001156 36 EEDDYKSYMGGIVAQLQDHFPDASFMVFNFREGEKRSQISDILSQYDMTVMDYPREYEHCPLLPLEMIHHFLRSSESWLS 115 (1135)
Q Consensus 36 ~e~~yrn~i~~V~~~L~~~h~~~~y~V~NLs~~~~~s~~~~~~~~f~~~V~~~p~~~~~~p~p~L~~l~~~c~~~~~wL~ 115 (1135)
.....+..|......|++..+. ....|-.-.+.+...+...+.+.+.+++.|-.+-.+|-.+.-+.+ ++.+...+.
T Consensus 75 ~~~~~~~ei~~~~~~l~~~~g~-~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i---~~~~~~~~~ 150 (191)
T TIGR02764 75 EDEKIKKDILRAQEIIEKLTGK-KPTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESI---VDRVVKNTK 150 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHhCC-CCCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHH---HHHHHhcCC
Confidence 3455666777777788776665 355565544445544444556677777776544445543444443 334444443
Q ss_pred hcCCCcEEEEEe
Q 001156 116 LEGQQNVLLMHC 127 (1135)
Q Consensus 116 ~~d~~NVvviHC 127 (1135)
+..||++||
T Consensus 151 ---~g~Iil~Hd 159 (191)
T TIGR02764 151 ---PGDIILLHA 159 (191)
T ss_pred ---CCCEEEEeC
Confidence 346999999
No 336
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.03 E-value=6.9e+02 Score=27.37 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhCC--C
Q 001156 1018 IQLKSLAEEMQAIIKGLEK---TLKGFISVAEVEVASVT-------------------NLYSVAGRNADALALYFGE--D 1073 (1135)
Q Consensus 1018 iqL~~L~~e~~~l~k~Lek---~l~~Fl~~a~~~l~~L~-------------------~~~~~~~~~~~~l~~yFGE--d 1073 (1135)
.+|+.+...|..|++.+.. ..+.+....+.-+..|+ +.+++....+.++..|-.. |
T Consensus 9 ~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d 88 (207)
T cd07633 9 QELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCC
Q 001156 1074 PARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEAEMEKAKGINLTKKSVKFAD 1134 (1135)
Q Consensus 1074 ~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~~~~~~~~~~~~~~~~~~ 1134 (1135)
.+. +.+...|.+|++.--+..+|.+++-+.+..+-.-.-.+..--..+.+..+..+||
T Consensus 89 ~aq---~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~ 146 (207)
T cd07633 89 NAS---DLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEAD 146 (207)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHHHHH
No 337
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=23.93 E-value=63 Score=36.96 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEecC
Q 001156 101 EMIHHFLRSSESWLSLEGQQNVLLMHCER 129 (1135)
Q Consensus 101 ~~l~~~c~~~~~wL~~~d~~NVvviHCk~ 129 (1135)
..+-.+++++..||.+ +++-||+|+++.
T Consensus 77 ~~l~~~L~~i~~FL~~-~p~EvVil~~~~ 104 (281)
T cd08620 77 QGFDTFLQDVVTFLKA-NPTEIVVVHITW 104 (281)
T ss_pred CcHHHHHHHHHHHHHH-CCCcEEEEEEEc
Confidence 4577899999999999 999999999974
No 338
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=23.88 E-value=4.7e+02 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCCCceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 198 PSDTPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 198 p~~~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
.....|.++-|..++++. +..|.|.||++++-.
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll 46 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLL 46 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEc
Confidence 345778888899999998 777889999998864
No 339
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.82 E-value=4.9e+02 Score=22.64 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1020 LKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
++.|..+++.|...+.. |..=+...+.++...++.-.+....++.++..|
T Consensus 5 id~Ls~dVq~L~~kvdq-Ls~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQ-LSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 45666666666655544 444455555556666666666666666666555
No 340
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=23.67 E-value=4.6e+02 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=20.2
Q ss_pred eEEEEEEEEcccC-C--CCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-Y--GGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~--~~~gcrP~~~Iy~~~ 231 (1135)
|.+.-|.-++++. + ..+.+.||++|+-.+
T Consensus 4 l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~ 35 (128)
T cd00275 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHG 35 (128)
T ss_pred EEEEEEeeecCCCCCCCCCCccCCEEEEEEEe
Confidence 4444555556777 5 467899999998753
No 341
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=23.64 E-value=8.2e+02 Score=28.31 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.7
Q ss_pred HHHHHHhCCChHHHHHhhhccC
Q 001156 910 VENLIKFCPTKEEMELLKNYTG 931 (1135)
Q Consensus 910 ve~L~~~~Pt~eE~~~Lk~~~g 931 (1135)
|-....-+|..|..+.|.+|..
T Consensus 99 Ig~mW~dLpd~EK~ey~~EYea 120 (410)
T KOG4715|consen 99 IGGMWLDLPDEEKQEYLNEYEA 120 (410)
T ss_pred HHHHHhhCcchHHHHHHHHHHH
Confidence 3445566777777778888753
No 342
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.60 E-value=8.5e+02 Score=30.56 Aligned_cols=13 Identities=31% Similarity=0.158 Sum_probs=6.6
Q ss_pred hcchHHHHHHHHH
Q 001156 961 NSIKLKEIMKKIL 973 (1135)
Q Consensus 961 ~S~~L~~lL~~IL 973 (1135)
+|.-+.+||.-.|
T Consensus 134 ~s~~~~e~~~~~l 146 (757)
T KOG4368|consen 134 KSPPHCELMAGHL 146 (757)
T ss_pred CCchHHHHHHHHH
Confidence 4555556554433
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=23.55 E-value=6.2e+02 Score=30.69 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001156 1083 TATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1083 f~~l~~Fi~~fkka~~en~k 1102 (1135)
++.+.+|+-+.+..+.+..|
T Consensus 531 vg~ie~flyq~ed~~lk~kk 550 (569)
T PF15015_consen 531 VGRIEDFLYQLEDSFLKTKK 550 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677787777776654443
No 344
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.52 E-value=90 Score=39.49 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhccccCCC--CCCCcceecccccchhhhhhccc
Q 001156 963 IKLKEIMKKILYLGNTLNQ--GTARGSAVGFKLDSLLKLTDTRA 1004 (1135)
Q Consensus 963 ~~L~~lL~~IL~iGN~lN~--g~~rg~A~GFkLssL~KL~dtKs 1004 (1135)
..+.+++..||.+||..-. +...+...|=.|..+.+|..+..
T Consensus 264 e~v~~iiAavLhLGNv~f~~~ed~~~~~~~~~l~~~aell~v~~ 307 (1001)
T KOG0164|consen 264 ESVLSIIAAVLHLGNVEFADNEDSSGIVNGAQLKYIAELLSVTG 307 (1001)
T ss_pred HHHHHHHHHHHhccceEEeecCcccccchhHHHHHHHHHHcCCH
Confidence 3467899999999995433 22333344445555666655544
No 345
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=23.20 E-value=2.2e+02 Score=27.96 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1068 LYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERK 1109 (1135)
Q Consensus 1068 ~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekk 1109 (1135)
..||- .+ +-++.+.+-.+++.|+++..+.....+.|.+
T Consensus 18 lvfGP--kK--LPelar~lGk~i~~fk~~~~d~k~~i~~E~~ 55 (108)
T PRK14858 18 IVIGP--QK--LPDLARSLGRGLAEFKKATDDFKQSMQEESR 55 (108)
T ss_pred HhcCc--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45663 43 4577888888888888888877665544433
No 346
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=8.1e+02 Score=30.38 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 001156 1054 NLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1054 ~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
..+..+...+.++++-||-.+
T Consensus 434 ~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 434 ALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 667778888899999999764
No 347
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=23.12 E-value=5.2e+02 Score=22.73 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=41.0
Q ss_pred EEEEEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEEEe
Q 001156 204 LLNCLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIECVH 282 (1135)
Q Consensus 204 ~L~~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~~h 282 (1135)
.+.-+..+++.. ...+.++||++|+-.... ...+.|............+ .+.|.....-...|.|++|+
T Consensus 3 ~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-------~~~~~T~~~~~~~~P~w~e---~~~~~~~~~~~~~l~i~v~~ 72 (101)
T smart00239 3 TVKIISARNLPKKDKKGKSDPYVKVSLDGDP-------KEKKKTKVVKNTLNPVWNE---TFEFEVPPPELAELEIEVYD 72 (101)
T ss_pred EEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-------cceEeeeEecCCCCCcccc---eEEEEecCcccCEEEEEEEe
Confidence 344445556666 333579999999886420 1233332221111111111 24444322226778888888
Q ss_pred ccccccccceEEEEEe
Q 001156 283 LEDDLVREEMMFRVMF 298 (1135)
Q Consensus 283 ~~~~~~~~~~mFr~~F 298 (1135)
..... ....+-++.+
T Consensus 73 ~~~~~-~~~~~G~~~~ 87 (101)
T smart00239 73 KDRFG-RDDFIGQVTI 87 (101)
T ss_pred cCCcc-CCceeEEEEE
Confidence 86432 2334444443
No 348
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.12 E-value=2.6e+02 Score=30.49 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001156 1050 ASVTNLYSVAGRNADALALYFGEDPAR 1076 (1135)
Q Consensus 1050 ~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1076 (1135)
..|.+....+.+.|..+.++|+|-++.
T Consensus 73 ~~L~~Av~~tg~~y~~IG~~faeQpk~ 99 (207)
T cd07670 73 AGLNQAIAFTGEAYEAIGELFAEQPRQ 99 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 367788888888999999999998875
No 349
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=23.00 E-value=9.3e+02 Score=28.37 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 001156 943 SEFRKNLNTVNSACEEVRNSI 963 (1135)
Q Consensus 943 ~~l~~~L~~l~~a~~el~~S~ 963 (1135)
..++..+..+..+..+-..|.
T Consensus 124 ~~l~~~~~k~~~~L~~A~~SD 144 (356)
T cd09237 124 ASLREDLVKLKKSLVEASASD 144 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 445555655555555554443
No 350
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.99 E-value=1.2e+03 Score=27.28 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 001156 948 NLNTVNSACEEVRN 961 (1135)
Q Consensus 948 ~L~~l~~a~~el~~ 961 (1135)
-|+.+.-+|++|+.
T Consensus 64 ~LElY~~sC~EL~~ 77 (312)
T smart00787 64 LLELYQFSCKELKK 77 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555533
No 351
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=22.90 E-value=3.7e+02 Score=25.78 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=42.6
Q ss_pred eEEEEEEEEcccC-C-CCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEecccceeecCeEEEE
Q 001156 203 LLLNCLILRVLPI-Y-GGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRVQGDVVIEC 280 (1135)
Q Consensus 203 l~L~~iil~~iP~-~-~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v~GDV~i~~ 280 (1135)
|.+.-+.-++++. + ..+.+.||++|+-.+. ..++.|.....+......+ .+.|... ....-+.|+|
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--------~~~~kT~~~~~~~~P~Wne---~~~~~v~-~~~~~l~~~v 71 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--------RELARTKVKKDTSNPVWNE---TKYILVN-SLTEPLNLTV 71 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC--------CcceEeeeecCCCCCcceE---EEEEEeC-CCCCEEEEEE
Confidence 4444444456665 3 3345999999998641 1233333322222222222 2333332 3355677888
Q ss_pred EeccccccccceEEEEEec
Q 001156 281 VHLEDDLVREEMMFRVMFH 299 (1135)
Q Consensus 281 ~h~~~~~~~~~~mFr~~Fn 299 (1135)
|+.+.. ...+.|-++.|.
T Consensus 72 ~d~~~~-~~d~~iG~~~~~ 89 (124)
T cd04044 72 YDFNDK-RKDKLIGTAEFD 89 (124)
T ss_pred EecCCC-CCCceeEEEEEE
Confidence 887643 234556666554
No 352
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.87 E-value=8.2e+02 Score=29.65 Aligned_cols=50 Identities=8% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCccchhhhHH--------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1006 NSKMTLMHYLCK--------------IQLKSLAEEMQAIIKGLEKTLKGFISVAEVEVASVTNL 1055 (1135)
Q Consensus 1006 d~k~TLLhyLv~--------------iqL~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~ 1055 (1135)
....||.+|++. -++.++...+..+...|...++..+...+.+++.|...
T Consensus 234 E~D~tl~D~vAd~ra~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~r 297 (438)
T PRK00286 234 ETDFTIADFVADLRAPTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARR 297 (438)
T ss_pred CCCccHHHHhhhccCCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446899999998 23455556666666666666666666666666555443
No 353
>PHA03246 large tegument protein UL36; Provisional
Probab=22.82 E-value=2.4e+03 Score=31.69 Aligned_cols=34 Identities=18% Similarity=0.057 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 001156 1042 ISVAEVEVASVTNLYSVAGRNADALALYFGEDPA 1075 (1135)
Q Consensus 1042 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1075 (1135)
+.....++++|...+...+-.|++.+..|+-+..
T Consensus 1779 L~~LR~rLd~Lr~~L~~AEaaWDeaW~~F~r~~~ 1812 (3095)
T PHA03246 1779 LVRLENRLAELKSELALAEVAWDDTWSTFIHDKD 1812 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccC
Confidence 3446678888999999999999999999997654
No 354
>COG4499 Predicted membrane protein [Function unknown]
Probab=22.74 E-value=2e+02 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHhccccCCC
Q 001156 962 SIKLKEIMKKILYLGNTLNQ 981 (1135)
Q Consensus 962 S~~L~~lL~~IL~iGN~lN~ 981 (1135)
-.+|.+-.+++|+.. |+|.
T Consensus 276 p~klPksv~Y~LA~S-YV~~ 294 (434)
T COG4499 276 PEKLPKSVQYILAVS-YVNL 294 (434)
T ss_pred hhhCcHHHHHHHHHH-Hhhc
Confidence 466788888888865 4554
No 355
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=22.71 E-value=1.1e+02 Score=32.66 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhcCCC-----------cEEEEEec-CCCcCchhhHHHHHHHHhhcc
Q 001156 101 EMIHHFLRSSESWLSLEGQQ-----------NVLLMHCE-RGGWPVLAFMLAGLLLYRKQY 149 (1135)
Q Consensus 101 ~~l~~~c~~~~~wL~~~d~~-----------NVvviHCk-~Gk~grtg~~iaa~L~y~~~~ 149 (1135)
+.|-.+|+.+..|+.. +.. .++.||.- .|. ||||=+++.+++....+
T Consensus 88 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~~H~~f~~IHPF~DGN-GRt~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 88 SELAILLDDVRYWLQN-GTFSPDEIAIRFHHRLVAIHPFPNGN-GRHARLATDLLLEQQGY 146 (186)
T ss_pred HHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHheecCcCCCC-cHHHHHHHHHHHHHCCC
Confidence 6788889989999865 321 34788985 688 79999999888876655
No 356
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.52 E-value=6.2e+02 Score=27.85 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001156 1080 EQVTATLLNFVRLFRKAHE 1098 (1135)
Q Consensus 1080 eeff~~l~~Fi~~fkka~~ 1098 (1135)
+.|+..|...+..|.+|.+
T Consensus 111 e~~~~~LLpVlDnLerAl~ 129 (211)
T PRK14160 111 EDVLKELLPVLDNLERAAA 129 (211)
T ss_pred HHHHHHHhhHHhHHHHHHh
Confidence 4556666666666666654
No 357
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=22.43 E-value=5.5e+02 Score=31.81 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHhhhccCCCCCCChhhhHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHhccccCCCCCCCcceecc--cccch
Q 001156 921 EEMELLKNYTGDKENLGKCEQISEFRKNLNTVNSACEEV--RNSIKLKEIMKKILYLGNTLNQGTARGSAVGF--KLDSL 996 (1135)
Q Consensus 921 eE~~~Lk~~~g~~~~L~~~Eqv~~l~~~L~~l~~a~~el--~~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GF--kLssL 996 (1135)
++++.+..+.|..+... +.+|...|..+....++- .....+...+.-+-..=.-||. ++..| .|.++
T Consensus 103 ~~le~~~~~~gsL~~~~----l~~I~~~L~~L~~~~~~~~~~d~~~~~~~w~~L~~~f~~L~~-----na~df~~~L~~~ 173 (486)
T PF09660_consen 103 EELENLLGERGSLQRTL----LERILERLRALAELAESPREGDAAEVYEWWRDLFEDFERLAQ-----NAQDFYASLQSV 173 (486)
T ss_pred HHHHhhcccccccchhH----HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhh
Q ss_pred hhhhhcccc---CCCccchhhhHH--HHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------HHHHHHHHHH
Q 001156 997 LKLTDTRAS---NSKMTLMHYLCK--IQLKSLAEEMQAIIKGLEK-TLKGFISVAEVEVA----------SVTNLYSVAG 1060 (1135)
Q Consensus 997 ~KL~dtKs~---d~k~TLLhyLv~--iqL~~L~~e~~~l~k~Lek-~l~~Fl~~a~~~l~----------~L~~~~~~~~ 1060 (1135)
..-.+++.. .-|..|+.||-. .+|......|..+.+.|+. .+..+++.+-..-. ........+.
T Consensus 174 ~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~r~~~~I~~~l~~l~~~~~~~ll~~~~~~~~~~p~~~d~~~~~~~~~~~~~ 253 (486)
T PF09660_consen 174 KAEEDMDTEAFLAYKDALIDYLRRFVQDLQRRAPRIAAALRELEDEGIERLLERAAEYELRIPRPGDGERDPEEWRERWR 253 (486)
T ss_pred hhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccccCcccccccCHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1061 RNADALALYFGEDPA-RCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEAEMEK 1119 (1135)
Q Consensus 1061 ~~~~~l~~yFGEd~~-~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~~~ 1119 (1135)
..+..|..||..+.. ....+.+...-.+-|..+-+......++..-..-|+.--.+.++
T Consensus 254 ~~W~~L~~WF~~~~~~~s~~~~L~~~t~~aI~~l~~~~~ri~e~~~~~~sR~~d~~~LA~ 313 (486)
T PF09660_consen 254 ARWEGLRAWFVGSGGRPSEAERLRDATREAIRKLLRNARRITERRRGGSSRKADLRHLAR 313 (486)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHH
No 358
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.40 E-value=5.5e+02 Score=23.77 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1025 EEMQAIIKGLEKTLKGFISVAEVEVASVTNLYSVAGR 1061 (1135)
Q Consensus 1025 ~e~~~l~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~ 1061 (1135)
+++++..+.+++.+.+...++..-+....++.+.+..
T Consensus 29 ~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 29 DEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 359
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=22.39 E-value=1.1e+03 Score=26.43 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHhhhccCCCCCCChhhhHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHhccccCCCCCCCcceecccccchhh
Q 001156 920 KEEMELLKNYTGDKENLGKCEQISEFRKNLNTVNSACEEVRNSIK-LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLK 998 (1135)
Q Consensus 920 ~eE~~~Lk~~~g~~~~L~~~Eqv~~l~~~L~~l~~a~~el~~S~~-L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~K 998 (1135)
.++-..-..|...+..-.-.+....++..|..+..+.++..++.. +...+..+...-..|..|... |....-
T Consensus 57 ~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~-------L~~~lp 129 (296)
T PF13949_consen 57 REDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEE-------LEASLP 129 (296)
T ss_dssp HHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHH-------HHHHS-
T ss_pred HHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhh-------HHhhCC
Q ss_pred hhhccccCCCccchhhhHH--HHhhhHHHHHHHHHHHHHH-------------------------------HHHHHHHHH
Q 001156 999 LTDTRASNSKMTLMHYLCK--IQLKSLAEEMQAIIKGLEK-------------------------------TLKGFISVA 1045 (1135)
Q Consensus 999 L~dtKs~d~k~TLLhyLv~--iqL~~L~~e~~~l~k~Lek-------------------------------~l~~Fl~~a 1045 (1135)
=.+....+.....+.-|-. -+|+.+..+=..+...|+. ++..|....
T Consensus 130 ~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i 209 (296)
T PF13949_consen 130 SSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKLQNDDISKLLSELNKNGSADFEALFEEELKKFDPLQNRI 209 (296)
T ss_dssp -B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1046 EVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVK 1102 (1135)
Q Consensus 1046 ~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k 1102 (1135)
..-+..=..++.++...+.++...+..+.....-+.++..|...+..|........+
T Consensus 210 ~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~~y~el~~~l~e 266 (296)
T PF13949_consen 210 QQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYDAYKELSSNLEE 266 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 360
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.39 E-value=1.1e+03 Score=26.09 Aligned_cols=144 Identities=11% Similarity=0.157 Sum_probs=76.8
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHhccccCCCCCCCcceecccccchhhhhhccccCCCccc
Q 001156 938 KCEQ-ISEFRKNLNTVNSACEEVRNSIK-----LKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTL 1011 (1135)
Q Consensus 938 ~~Eq-v~~l~~~L~~l~~a~~el~~S~~-----L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TL 1011 (1135)
..|. +.+|...++.|..+|..+.++.+ =+.+...+..++++=-.++ .+ ..+-+++|.|++.
T Consensus 6 ~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~-~d--De~~~~~l~kFs~---------- 72 (215)
T cd07601 6 VFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELG-RD--DEILVSTLKQFSK---------- 72 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CC--cHHHHHHHHHHHH----------
Confidence 3344 67788888888888888776543 1334555555542100010 11 1111122222221
Q ss_pred hhhhHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--h--HHHH
Q 001156 1012 MHYLCKIQLKSLAEEMQAI----IKGLEKTLKGFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCP--F--EQVT 1083 (1135)
Q Consensus 1012 LhyLv~iqL~~L~~e~~~l----~k~Lek~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~--~--eeff 1083 (1135)
-|.++.+.-..+ ...+-..|..|+..--..+.++++.|.+..+.++..+.-|..=+++.+ - .+.-
T Consensus 73 -------~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~ 145 (215)
T cd07601 73 -------VVDELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVN 145 (215)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHH
Confidence 122222222222 233333788888777778888888998888888887777765444321 1 1445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001156 1084 ATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1084 ~~l~~Fi~~fkka~~en~ 1101 (1135)
..|..=.+.|..+.=+..
T Consensus 146 ~~l~~~R~~F~~~~ldYv 163 (215)
T cd07601 146 DEVYACRKKQHQTAMNYY 163 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666665555544
No 361
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=22.38 E-value=7.7e+02 Score=24.40 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCChHHHHHHHHHHHHHHHHHHHH
Q 001156 1045 AEVEVASVTNLYSVAGRNADALALYFGEDPA-RCPFEQVTATLLNFVRLFRKAHEE 1099 (1135)
Q Consensus 1045 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~-~~~~eeff~~l~~Fi~~fkka~~e 1099 (1135)
+...+......+..+..........|++... .++..+ +..+..|+..+..++..
T Consensus 25 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~-l~~~~~f~~~l~~~i~~ 79 (141)
T TIGR02473 25 AQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALE-LSNYQRFIRQLDQRIQQ 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444222 234333 44566666666655543
No 362
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.24 E-value=1e+03 Score=32.22 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=9.3
Q ss_pred hhhccCCCCHHhHHHHH
Q 001156 881 IMLTKVKMPLPDMMVAV 897 (1135)
Q Consensus 881 I~L~klk~~~~ei~~aI 897 (1135)
++.+.-+..-.-|+.||
T Consensus 66 fI~G~NGSGKSAIltAl 82 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTAL 82 (1074)
T ss_pred EeecCCCCcHHHHHHHH
Confidence 44455555555666665
No 363
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=22.19 E-value=1.1e+02 Score=37.22 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEecCCCcCchhhHHH
Q 001156 101 EMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLA 140 (1135)
Q Consensus 101 ~~l~~~c~~~~~wL~~~d~~NVvviHCk~Gk~grtg~~ia 140 (1135)
..|-.+|.-+..+|.. ++..=++|+|..|+---.|+++|
T Consensus 358 ~~LP~i~~fv~~~L~~-~~~~~iLV~C~sGkDlSVgVaLa 396 (451)
T PF04179_consen 358 KALPKICSFVRSHLSS-DPGKPILVCCDSGKDLSVGVALA 396 (451)
T ss_pred HHHHHHHHHHHHHhcc-cCCCcEEEEcCCcchHHHHHHHH
Confidence 3455667777778887 77888999999998433344333
No 364
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=22.11 E-value=2.1e+03 Score=29.31 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=9.1
Q ss_pred cccHHHHHHHHHhCC
Q 001156 904 VLDVDQVENLIKFCP 918 (1135)
Q Consensus 904 ~L~~d~ve~L~~~~P 918 (1135)
-|.-|.|....+.-|
T Consensus 146 FLpQDkV~EFa~L~p 160 (1072)
T KOG0979|consen 146 FLPQDKVKEFARLSP 160 (1072)
T ss_pred hccHHHHHHHHcCCh
Confidence 366677766655544
No 365
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=21.97 E-value=1.5e+03 Score=27.59 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=11.5
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 001156 1018 IQLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1018 iqL~~L~~e~~~l~k~Lek 1036 (1135)
-||+.+.+||..+.+.|++
T Consensus 250 ~qLe~v~kdi~~a~keL~~ 268 (426)
T smart00806 250 KQLETVQKELETARKELKK 268 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665544
No 366
>PLN03223 Polycystin cation channel protein; Provisional
Probab=21.95 E-value=1.1e+03 Score=33.03 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=13.9
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 001156 1019 QLKSLAEEMQAIIKGLEK 1036 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek 1036 (1135)
+.+.|++|+..|.+.+|+
T Consensus 1572 ~~~~l~~e~~~L~~s~er 1589 (1634)
T PLN03223 1572 DGDVLEKEVDQLQQSLER 1589 (1634)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 355678888888888887
No 367
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=21.93 E-value=5.4e+02 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=23.0
Q ss_pred CceEEEEEEEEcccC-C-CCCCceeEEEEEecC
Q 001156 201 TPLLLNCLILRVLPI-Y-GGNGCRPVIRVYGQD 231 (1135)
Q Consensus 201 ~~l~L~~iil~~iP~-~-~~~gcrP~~~Iy~~~ 231 (1135)
..|.+.-|.-++++. + ..|.|.||++||-..
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp 61 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLE 61 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEEC
Confidence 457777777778876 3 456789999999853
No 368
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.89 E-value=1.2e+03 Score=30.97 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=26.0
Q ss_pred cCCCCCCCcceecccccchhhhhhccccCCCccchhhhHH
Q 001156 978 TLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCK 1017 (1135)
Q Consensus 978 ~lN~g~~rg~A~GFkLssL~KL~dtKs~d~k~TLLhyLv~ 1017 (1135)
|+|.|+..-+-.||.+..+-.|..--+.+...+=+.+|..
T Consensus 18 ~~n~~~d~sn~~G~lInvi~nL~~Se~~e~re~ek~~Led 57 (982)
T KOG3691|consen 18 YVNYGTDMSNELGLLINVIRNLVGSEDTEPRETEKERLED 57 (982)
T ss_pred cccccCCcccccchhhhHHHhhccCCcccHHHHHHHHHHH
Confidence 7888886666679988888877744444444444444444
No 369
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=21.83 E-value=3.3e+02 Score=31.68 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001156 1052 VTNLYSVAGR 1061 (1135)
Q Consensus 1052 L~~~~~~~~~ 1061 (1135)
+..++..+-.
T Consensus 233 ~~~l~~~v~~ 242 (321)
T PF07946_consen 233 LEPLLKLVFY 242 (321)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 370
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=21.79 E-value=5.1e+02 Score=26.83 Aligned_cols=30 Identities=10% Similarity=-0.172 Sum_probs=20.8
Q ss_pred CceEEEEEEEEcccC-CCCCCceeEEEEEec
Q 001156 201 TPLLLNCLILRVLPI-YGGNGCRPVIRVYGQ 230 (1135)
Q Consensus 201 ~~l~L~~iil~~iP~-~~~~gcrP~~~Iy~~ 230 (1135)
-.|.++=|.-++++. +..|.|.||++|+-.
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~ 58 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIV 58 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEc
Confidence 344444455556776 777889999999875
No 371
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.65 E-value=1e+03 Score=28.51 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=8.1
Q ss_pred HHhhhHHHHHHHHHHH
Q 001156 1018 IQLKSLAEEMQAIIKG 1033 (1135)
Q Consensus 1018 iqL~~L~~e~~~l~k~ 1033 (1135)
.+|+++..+|..++..
T Consensus 74 fqlddi~~qlr~~rte 89 (499)
T COG4372 74 FQLDDIRPQLRALRTE 89 (499)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4555555555544443
No 372
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.37 E-value=4.6e+02 Score=32.97 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=9.0
Q ss_pred HHHHhcchHHHHHHHHHh
Q 001156 957 EEVRNSIKLKEIMKKILY 974 (1135)
Q Consensus 957 ~el~~S~~L~~lL~~IL~ 974 (1135)
+.|.+..++...++.++.
T Consensus 219 ~~L~n~e~i~~~~~~~~~ 236 (563)
T TIGR00634 219 QRLSNLEKLRELSQNALA 236 (563)
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 334445555555555544
No 373
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=21.34 E-value=6.7e+02 Score=26.09 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=43.7
Q ss_pred EEEEEEEEc--ccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEeccc------ceeec
Q 001156 204 LLNCLILRV--LPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIY------CRVQG 274 (1135)
Q Consensus 204 ~L~~iil~~--iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~------~~v~G 274 (1135)
.|+-+..++ +|. +..+-+.||+++|-.-+. .. ...+.|...+.+......+. ..|.|+.. ..=..
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~----~~-~~k~KT~v~k~TlnPvfNE~-f~f~I~~~~~~~~R~l~~~ 78 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPN----EE-PQSGKTSTIKDTNSPEYNES-FKLNINRKHRSFQRVFKRH 78 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCC----CC-CceeecCcccCCCCCcccce-EEEEeccccchhhhhccCC
Confidence 344455555 455 666679999999841110 01 12333333333333222222 23444322 12245
Q ss_pred CeEEEEEeccccccccceEEEEEe
Q 001156 275 DVVIECVHLEDDLVREEMMFRVMF 298 (1135)
Q Consensus 275 DV~i~~~h~~~~~~~~~~mFr~~F 298 (1135)
.+.|++||.+.-+...+.|-++.+
T Consensus 79 ~L~~~V~d~~~f~~~D~~iG~~~i 102 (155)
T cd08690 79 GLKFEVYHKGGFLRSDKLLGTAQV 102 (155)
T ss_pred cEEEEEEeCCCcccCCCeeEEEEE
Confidence 689999998742223455555543
No 374
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=21.25 E-value=5.7e+02 Score=24.07 Aligned_cols=85 Identities=11% Similarity=0.043 Sum_probs=43.5
Q ss_pred EEEEEcccC-CCCCCceeEEEEEecCCCCCCCCCCceEEeccccccccccccccceEEEEeccccee----ecCeEEEEE
Q 001156 207 CLILRVLPI-YGGNGCRPVIRVYGQDSKIPANRSSKLLFSTFKFKTNVRHYLQDECALVKIDIYCRV----QGDVVIECV 281 (1135)
Q Consensus 207 ~iil~~iP~-~~~~gcrP~~~Iy~~~~~~~~~~~~~~v~ss~~~~~~~~~y~~~d~~~i~~~~~~~v----~GDV~i~~~ 281 (1135)
.|.-++++. +..+.|.||++||-.+. +.....++.|.....+...... .|.|...-.- .--+.|+||
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~----~~~~~~~~kT~vi~~t~nP~Wn----~f~~~~~~l~~~~~~~~l~~~V~ 77 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSE----DGTWVLVYRTEVIKNTLNPVWK----PFTIPLQKLCNGDYDRPIKIEVY 77 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECC----CCCEEEEEeeeEeccCCCCceE----EEEEEHHHhcCCCcCCEEEEEEE
Confidence 445556776 66678999999997531 0012345555443333322221 1333321111 234677888
Q ss_pred eccccccccceEEEEEecc
Q 001156 282 HLEDDLVREEMMFRVMFHT 300 (1135)
Q Consensus 282 h~~~~~~~~~~mFr~~FnT 300 (1135)
+.+. ....+.|-++.+.-
T Consensus 78 d~d~-~~~d~~iG~~~~~l 95 (110)
T cd04047 78 DYDS-SGKHDLIGEFETTL 95 (110)
T ss_pred EeCC-CCCCcEEEEEEEEH
Confidence 7753 23345566665543
No 375
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=21.22 E-value=1.2e+03 Score=26.25 Aligned_cols=14 Identities=7% Similarity=0.266 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001156 1086 LLNFVRLFRKAHEE 1099 (1135)
Q Consensus 1086 l~~Fi~~fkka~~e 1099 (1135)
+..-...|..++++
T Consensus 133 veK~Kk~Y~~~c~~ 146 (237)
T cd07685 133 IEKLKSQYRSLAKD 146 (237)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 376
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.11 E-value=2e+03 Score=28.69 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHhhhccCCCCCCChhhh--------HHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHhccccC
Q 001156 909 QVENLIKFCPTKEEMELLKNYTGDKENLGKCEQ--------ISEFRKNLNTVNSA-CEEVRNSIKLKEIMKKILYLGNTL 979 (1135)
Q Consensus 909 ~ve~L~~~~Pt~eE~~~Lk~~~g~~~~L~~~Eq--------v~~l~~~L~~l~~a-~~el~~S~~L~~lL~~IL~iGN~l 979 (1135)
+.+.|-+.+ .+|++.++.-. ...+|+.+| +..+......+..+ .++-++...|-+.++-+=.
T Consensus 288 qkeelVk~~--qeeLd~lkqt~--t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK----- 358 (1265)
T KOG0976|consen 288 QKEELVKEL--QEELDTLKQTR--TRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK----- 358 (1265)
T ss_pred HHHHHHHHH--HHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH-----
Q ss_pred CCCCCCcceecccccchhhhhhcccc--CCCccchhhhHH--HHhhhHHHHHHHHHHH----------HHH------HHH
Q 001156 980 NQGTARGSAVGFKLDSLLKLTDTRAS--NSKMTLMHYLCK--IQLKSLAEEMQAIIKG----------LEK------TLK 1039 (1135)
Q Consensus 980 N~g~~rg~A~GFkLssL~KL~dtKs~--d~k~TLLhyLv~--iqL~~L~~e~~~l~k~----------Lek------~l~ 1039 (1135)
....-+...-+|.+.|-+ .-..+|+..-++ .|++.+..-|-.+..+ |.+ .|+
T Consensus 359 --------krd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mg 430 (1265)
T KOG0976|consen 359 --------KRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMG 430 (1265)
T ss_pred --------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1040 GFISVAEVEVASVTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQSELERKKAEKEAEMEK 1119 (1135)
Q Consensus 1040 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~~e~Ekkk~~rea~~~~ 1119 (1135)
.-+..|+-++..++.+++..+-.....+.--.| +-+|+..+-+=+..=++.-.++..-+.+-.|.+.|=+.+++
T Consensus 431 thl~mad~Q~s~fk~Lke~aegsrrraIeQcne------mv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE 504 (1265)
T KOG0976|consen 431 THLSMADYQLSNFKVLKEHAEGSRRRAIEQCNE------MVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE 504 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHH------HHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h------------ccccccccccccCC
Q 001156 1120 A------------KGINLTKKSVKFAD 1134 (1135)
Q Consensus 1120 ~------------~~~~~~~~~~~~~~ 1134 (1135)
. ...++++++.+.+|
T Consensus 505 eiQethldyR~els~lA~r~ag~h~ad 531 (1265)
T KOG0976|consen 505 EIQETHLDYRSELSELAHRKAGDHPAD 531 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCC
No 377
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=21.06 E-value=2.3e+02 Score=36.78 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1054 NLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKAHEENVKQ 1103 (1135)
Q Consensus 1054 ~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkka~~en~k~ 1103 (1135)
.+|.++++..+.+...|..|..- ++++..-|..|+....+..+.++++
T Consensus 427 ~l~~~i~~~V~~i~~~f~~d~~v--f~~~l~el~~~~~~~~~~~~~~~~r 474 (729)
T PF07793_consen 427 PLYQKIEEVVDRILQEFEGDPAV--FEELLQELEAFLEQERRRAQRNERR 474 (729)
T ss_pred HHHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888899999887653 5777788888888877776666654
No 378
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=21.03 E-value=4.8e+02 Score=25.58 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=20.5
Q ss_pred eEEEEEEEEcccC-CCCCCceeEEEEEecC
Q 001156 203 LLLNCLILRVLPI-YGGNGCRPVIRVYGQD 231 (1135)
Q Consensus 203 l~L~~iil~~iP~-~~~~gcrP~~~Iy~~~ 231 (1135)
|.++-|.-++++. +..+.|.||++|+.++
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~ 32 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGK 32 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEEECC
Confidence 3444455556777 6667899999999853
No 379
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.83 E-value=9.4e+02 Score=27.85 Aligned_cols=65 Identities=6% Similarity=0.087 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNADALAL--YFGEDPAR--CPFEQVTATLLNFVRLFRKAHEENV 1101 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~--yFGEd~~~--~~~eeff~~l~~Fi~~fkka~~en~ 1101 (1135)
+|...+......-..++..++.+++.....-. ..|.+... ......-..|.+-+..|.+...+.+
T Consensus 79 ~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r 147 (297)
T KOG0810|consen 79 KLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYR 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555544444333321 22222211 1122233445556666666655443
No 380
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.74 E-value=1.2e+03 Score=28.67 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001156 1037 TLKGFISVAEVEVASVTNLYSVAGRNA 1063 (1135)
Q Consensus 1037 ~l~~Fl~~a~~~l~~L~~~~~~~~~~~ 1063 (1135)
.|..-+..-+.+|..|+.+-.++++..
T Consensus 450 Emdk~LskKeeeverLQ~lkgelEkat 476 (527)
T PF15066_consen 450 EMDKTLSKKEEEVERLQQLKGELEKAT 476 (527)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 381
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.62 E-value=5.1e+02 Score=32.85 Aligned_cols=16 Identities=0% Similarity=0.048 Sum_probs=6.6
Q ss_pred HHHHhhhCCCCcEEEE
Q 001156 48 VAQLQDHFPDASFMVF 63 (1135)
Q Consensus 48 ~~~L~~~h~~~~y~V~ 63 (1135)
.+++....-.|.|++|
T Consensus 29 ~~~i~~~~i~~a~Lf~ 44 (585)
T PRK14950 29 RNAIAEGRVAHAYLFT 44 (585)
T ss_pred HHHHHhCCCceEEEEE
Confidence 3444443333335554
No 382
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=20.61 E-value=5.3e+02 Score=29.31 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=6.3
Q ss_pred ccchhhhhccC
Q 001156 876 ANNTEIMLTKV 886 (1135)
Q Consensus 876 aqNi~I~L~kl 886 (1135)
++...|+|++|
T Consensus 159 andt~v~lgrl 169 (297)
T PF07174_consen 159 ANDTSVVLGRL 169 (297)
T ss_pred CCCceEEeccc
Confidence 34555666665
No 383
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.54 E-value=1.8e+03 Score=27.93 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=10.6
Q ss_pred cccCC--CCCCCcceecccccc
Q 001156 976 GNTLN--QGTARGSAVGFKLDS 995 (1135)
Q Consensus 976 GN~lN--~g~~rg~A~GFkLss 995 (1135)
-|-+| .+-.++...||.+-+
T Consensus 396 ~~~~n~~~~pe~~~~~~~d~k~ 417 (581)
T KOG0995|consen 396 ENSKNLERNPERAATNGVDLKS 417 (581)
T ss_pred HHhccCCcCCccCccccccchh
Confidence 35666 333445555666543
No 384
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=20.50 E-value=6.7e+02 Score=27.39 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 001156 1051 SVTNLYSVAGRN 1062 (1135)
Q Consensus 1051 ~L~~~~~~~~~~ 1062 (1135)
.|+++..+|.+.
T Consensus 136 ~lK~mikeVded 147 (244)
T KOG0041|consen 136 GLKNMIKEVDED 147 (244)
T ss_pred HHHHHHHHhhcc
Confidence 456666666653
No 385
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.47 E-value=2.2e+02 Score=29.71 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=32.7
Q ss_pred HhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001156 1019 QLKSLAEEMQAIIKGLEK-----------TLKGFISVAEVEVASVTNLYSVAGRNADALALYF 1070 (1135)
Q Consensus 1019 qL~~L~~e~~~l~k~Lek-----------~l~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1070 (1135)
+...|..|+.++++++.. +++.=++.++++++++.+.....+..++....++
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777776654 5666666666666666666666555555555543
No 386
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=20.29 E-value=2.9e+02 Score=29.33 Aligned_cols=8 Identities=38% Similarity=0.293 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 001156 1063 ADALALYF 1070 (1135)
Q Consensus 1063 ~~~l~~yF 1070 (1135)
+..|..||
T Consensus 40 m~alR~~f 47 (170)
T PF14943_consen 40 MRALRSEF 47 (170)
T ss_pred HHHHHHHH
Confidence 33333333
No 387
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.27 E-value=2.8e+02 Score=33.44 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=31.8
Q ss_pred cchhhhhccCCCCHHhHHHHHHhhccc--cccHHHHHHHHH
Q 001156 877 NNTEIMLTKVKMPLPDMMVAVLAMDES--VLDVDQVENLIK 915 (1135)
Q Consensus 877 qNi~I~L~klk~~~~ei~~aI~~lD~~--~L~~d~ve~L~~ 915 (1135)
|.+.++|+.|---...+..+|.+||.. ++++|+|..|..
T Consensus 202 QafdlFLKhlVGGLHTVYTKLKRLdI~PvVCnVEQVRiLRg 242 (641)
T KOG3915|consen 202 QAFDLFLKHLVGGLHTVYTKLKRLDITPVVCNVEQVRILRG 242 (641)
T ss_pred HHHHHHHHHHhchHHHHHHHhhccceeeeeechHHHHHHhc
Confidence 566788888855778899999999876 678999988875
No 388
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=20.27 E-value=2.2e+03 Score=28.92 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=5.9
Q ss_pred HHHHhccccCCCCC
Q 001156 970 KKILYLGNTLNQGT 983 (1135)
Q Consensus 970 ~~IL~iGN~lN~g~ 983 (1135)
...|.=| | |.++
T Consensus 555 ~kHldRG-~-NSCa 566 (982)
T PF03154_consen 555 NKHLDRG-Y-NSCA 566 (982)
T ss_pred HHHhhcc-c-cccc
Confidence 3344556 4 6543
No 389
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.21 E-value=9.4e+02 Score=31.34 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001156 1047 VEVASVTNLYSVAGRNADALALYFGEDP 1074 (1135)
Q Consensus 1047 ~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1074 (1135)
.++.+|+.++..+.....++...||++.
T Consensus 311 ~~~~~l~~ql~~l~~~~~~l~~~~~~~h 338 (726)
T PRK09841 311 EQIVNVDNQLNELTFREAEISQLYKKDH 338 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3445566667777777788888898865
No 390
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=20.01 E-value=7.9e+02 Score=26.73 Aligned_cols=102 Identities=8% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Q 001156 1020 LKSLAEEMQAIIKGLEKTLKGFISVAEVEVAS----VTNLYSVAGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRK 1095 (1135)
Q Consensus 1020 L~~L~~e~~~l~k~Lek~l~~Fl~~a~~~l~~----L~~~~~~~~~~~~~l~~yFGEd~~~~~~eeff~~l~~Fi~~fkk 1095 (1135)
++.+.+.+.....+++....+|.+.|..+++. +.++...+-..+-+....-....-.....++...|..+...+.+
T Consensus 27 ~e~~~d~~~~~l~~~~~qa~~y~~~~~~elR~qv~~l~~~l~~v~~lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 106 (208)
T PF14644_consen 27 FEQCADNLVQKLQSYQEQADEYHNSCLQELRNQVERLEELLPKVPELVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQ 106 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHhc
Q 001156 1096 AHEENVKQSE--------LERKKAEKEAEMEKAK 1121 (1135)
Q Consensus 1096 a~~en~k~~e--------~Ekkk~~rea~~~~~~ 1121 (1135)
.+.++..+.. .++-+...++|.++.+
T Consensus 107 ~k~~h~~~LrP~LghP~~~~eL~~L~~~E~~R~~ 140 (208)
T PF14644_consen 107 QKDQHEQQLRPNLGHPDNRQELESLCEREEKRQK 140 (208)
T ss_pred HHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHHHH
Done!