Query 001157
Match_columns 1135
No_of_seqs 894 out of 4851
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 17:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 7.2E-68 1.6E-72 526.9 35.6 489 5-663 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.4E-65 3E-70 493.9 32.3 488 5-660 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 1.8E-57 4E-62 486.5 47.6 573 352-1104 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 3.7E-56 8.1E-61 476.5 46.9 568 318-1050 25-622 (775)
5 KOG0318 WD40 repeat stress pro 100.0 4E-51 8.7E-56 420.6 61.9 571 351-1101 23-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 4.4E-50 9.5E-55 429.6 63.0 551 342-1102 51-710 (893)
7 KOG0318 WD40 repeat stress pro 100.0 3.6E-50 7.7E-55 413.6 56.8 552 324-1002 38-601 (603)
8 KOG0291 WD40-repeat-containing 100.0 2.8E-49 6E-54 423.5 57.9 587 313-1056 56-718 (893)
9 KOG0306 WD40-repeat-containing 100.0 4.8E-49 1E-53 421.5 51.3 574 356-1104 32-667 (888)
10 KOG0306 WD40-repeat-containing 100.0 8.3E-49 1.8E-53 419.6 48.9 499 345-1004 64-665 (888)
11 KOG0271 Notchless-like WD40 re 100.0 8E-51 1.7E-55 401.6 29.7 367 404-952 111-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 1.2E-49 2.6E-54 393.3 29.2 327 342-800 110-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 3.3E-44 7.1E-49 380.6 41.4 620 351-1102 42-714 (1080)
14 KOG0263 Transcription initiati 100.0 1.1E-41 2.5E-46 370.6 38.6 553 3-620 19-651 (707)
15 KOG0273 Beta-transducin family 100.0 1.1E-41 2.4E-46 346.6 33.8 309 338-671 170-490 (524)
16 KOG1408 WD40 repeat protein [F 100.0 1.2E-39 2.5E-44 346.1 42.2 568 345-1048 77-714 (1080)
17 KOG1539 WD repeat protein [Gen 100.0 5.6E-38 1.2E-42 341.2 55.8 584 352-1101 39-648 (910)
18 KOG0272 U4/U6 small nuclear ri 100.0 1E-41 2.2E-46 342.6 22.2 282 345-660 174-458 (459)
19 KOG1063 RNA polymerase II elon 100.0 4.3E-38 9.3E-43 335.3 48.5 637 327-1101 34-763 (764)
20 KOG0272 U4/U6 small nuclear ri 100.0 8.8E-41 1.9E-45 335.8 23.9 285 406-800 173-458 (459)
21 KOG0276 Vesicle coat complex C 100.0 1.1E-37 2.3E-42 327.5 45.8 476 345-1003 12-490 (794)
22 KOG0286 G-protein beta subunit 100.0 8.5E-39 1.9E-43 306.2 33.4 292 339-660 47-343 (343)
23 KOG0279 G protein beta subunit 100.0 3E-38 6.4E-43 300.9 32.2 297 339-662 7-313 (315)
24 KOG1539 WD repeat protein [Gen 100.0 5.1E-36 1.1E-40 326.1 52.4 553 345-1048 75-649 (910)
25 KOG0286 G-protein beta subunit 100.0 5.5E-37 1.2E-41 293.9 32.6 249 403-664 50-305 (343)
26 KOG0292 Vesicle coat complex C 100.0 1.4E-35 3.1E-40 323.0 47.3 552 346-1107 9-600 (1202)
27 KOG2106 Uncharacterized conser 100.0 1.6E-34 3.4E-39 296.4 48.6 540 350-1100 69-625 (626)
28 KOG0276 Vesicle coat complex C 100.0 2.2E-35 4.9E-40 310.1 43.2 473 404-1101 9-490 (794)
29 KOG1063 RNA polymerase II elon 100.0 1.8E-35 3.8E-40 315.4 42.5 582 352-1101 20-699 (764)
30 KOG0315 G-protein beta subunit 100.0 2E-36 4.4E-41 282.9 29.3 285 358-676 9-301 (311)
31 KOG0279 G protein beta subunit 100.0 6.4E-36 1.4E-40 285.0 31.7 296 769-1102 12-314 (315)
32 KOG0296 Angio-associated migra 100.0 8.6E-35 1.9E-39 287.6 35.5 339 448-954 59-398 (399)
33 KOG0315 G-protein beta subunit 100.0 5.5E-35 1.2E-39 273.4 31.5 295 512-933 11-309 (311)
34 KOG0292 Vesicle coat complex C 100.0 1.7E-33 3.7E-38 306.9 46.5 480 404-1055 5-525 (1202)
35 KOG0295 WD40 repeat-containing 100.0 1.4E-35 3E-40 292.9 26.1 294 335-661 97-405 (406)
36 KOG0284 Polyadenylation factor 100.0 2.9E-36 6.2E-41 301.8 20.7 342 285-662 24-380 (464)
37 KOG0296 Angio-associated migra 100.0 6E-34 1.3E-38 281.6 35.0 329 404-912 60-398 (399)
38 KOG2106 Uncharacterized conser 100.0 1E-32 2.3E-37 283.1 43.6 495 295-953 87-625 (626)
39 KOG0285 Pleiotropic regulator 100.0 6.5E-35 1.4E-39 286.6 25.6 294 335-662 139-439 (460)
40 KOG0273 Beta-transducin family 100.0 4.3E-34 9.4E-39 291.5 31.1 280 346-662 235-523 (524)
41 KOG0645 WD40 repeat protein [G 100.0 5.1E-33 1.1E-37 264.0 32.4 291 339-662 6-311 (312)
42 KOG0265 U5 snRNP-specific prot 100.0 1.1E-33 2.4E-38 272.5 27.6 285 344-660 45-336 (338)
43 KOG0295 WD40 repeat-containing 100.0 7.4E-34 1.6E-38 280.7 26.2 305 488-953 99-405 (406)
44 KOG0285 Pleiotropic regulator 100.0 1.4E-33 3.1E-38 277.2 25.6 246 403-664 146-391 (460)
45 KOG0265 U5 snRNP-specific prot 100.0 5.2E-33 1.1E-37 267.9 28.4 252 402-664 41-298 (338)
46 KOG2048 WD40 repeat protein [G 100.0 2.9E-30 6.3E-35 275.8 50.9 502 407-1102 24-549 (691)
47 KOG0266 WD40 repeat-containing 100.0 1.6E-32 3.4E-37 313.4 33.4 286 345-662 158-454 (456)
48 KOG2048 WD40 repeat protein [G 100.0 4.2E-29 9.1E-34 266.9 54.0 543 345-1047 24-601 (691)
49 KOG0316 Conserved WD40 repeat- 100.0 2E-32 4.4E-37 253.9 24.7 287 338-661 8-298 (307)
50 KOG0263 Transcription initiati 100.0 5.2E-33 1.1E-37 303.3 24.1 247 407-664 377-651 (707)
51 KOG0284 Polyadenylation factor 100.0 9.8E-33 2.1E-37 276.5 21.3 283 772-1104 96-383 (464)
52 KOG0266 WD40 repeat-containing 100.0 1.7E-31 3.7E-36 304.9 33.3 290 771-1101 158-454 (456)
53 KOG0645 WD40 repeat protein [G 100.0 6.9E-31 1.5E-35 249.6 31.0 292 770-1101 12-311 (312)
54 KOG0281 Beta-TrCP (transducin 100.0 3.8E-33 8.2E-38 272.7 15.4 271 346-664 197-479 (499)
55 KOG1445 Tumor-specific antigen 100.0 3.4E-30 7.3E-35 270.8 37.1 649 339-1050 71-847 (1012)
56 KOG0293 WD40 repeat-containing 100.0 8.2E-32 1.8E-36 269.7 22.5 288 770-1103 222-515 (519)
57 KOG0282 mRNA splicing factor [ 100.0 1.4E-32 3E-37 282.0 17.4 292 336-660 203-503 (503)
58 cd00200 WD40 WD40 domain, foun 100.0 2.2E-30 4.8E-35 284.2 36.0 282 345-660 8-289 (289)
59 KOG0282 mRNA splicing factor [ 100.0 3.1E-31 6.7E-36 272.2 20.7 287 769-1099 211-503 (503)
60 KOG0275 Conserved WD40 repeat- 100.0 1.1E-31 2.4E-36 259.9 15.6 292 771-1099 212-507 (508)
61 KOG0281 Beta-TrCP (transducin 100.0 3.9E-31 8.4E-36 258.7 18.8 279 771-1104 196-480 (499)
62 KOG0278 Serine/threonine kinas 100.0 2.8E-31 6.1E-36 248.4 16.8 282 345-664 13-299 (334)
63 PLN00181 protein SPA1-RELATED; 100.0 4.8E-29 1E-33 308.2 40.5 291 345-661 482-792 (793)
64 KOG0316 Conserved WD40 repeat- 100.0 9E-30 1.9E-34 236.4 24.0 247 402-664 11-259 (307)
65 cd00200 WD40 WD40 domain, foun 100.0 1E-28 2.2E-33 270.9 36.5 247 404-664 5-251 (289)
66 KOG0278 Serine/threonine kinas 100.0 8.6E-31 1.9E-35 245.2 16.2 299 766-1116 8-314 (334)
67 PLN00181 protein SPA1-RELATED; 100.0 7.3E-29 1.6E-33 306.5 37.2 326 744-1100 457-792 (793)
68 KOG0641 WD40 repeat protein [G 100.0 3E-28 6.5E-33 224.3 31.5 310 337-662 23-349 (350)
69 KOG0288 WD40 repeat protein Ti 100.0 4E-30 8.7E-35 258.4 17.9 294 333-659 161-458 (459)
70 KOG0313 Microtubule binding pr 100.0 7.2E-29 1.6E-33 246.8 25.6 291 334-661 93-417 (423)
71 KOG0310 Conserved WD40 repeat- 100.0 1.2E-28 2.6E-33 253.8 27.3 284 345-662 25-309 (487)
72 KOG1445 Tumor-specific antigen 100.0 2.1E-26 4.5E-31 242.5 43.5 667 403-1107 74-850 (1012)
73 KOG0973 Histone transcription 100.0 2.4E-28 5.3E-33 276.5 28.6 306 345-664 12-357 (942)
74 KOG0643 Translation initiation 100.0 1.4E-27 3.1E-32 226.3 27.2 285 344-664 8-319 (327)
75 PTZ00421 coronin; Provisional 100.0 6E-27 1.3E-31 265.0 35.7 303 347-662 21-331 (493)
76 KOG0643 Translation initiation 100.0 7.3E-27 1.6E-31 221.5 30.2 235 403-653 5-252 (327)
77 KOG1446 Histone H3 (Lys4) meth 100.0 2E-26 4.2E-31 225.7 33.1 281 346-662 14-303 (311)
78 KOG0283 WD40 repeat-containing 100.0 5.8E-28 1.3E-32 266.7 24.9 300 345-664 266-578 (712)
79 KOG0640 mRNA cleavage stimulat 100.0 1E-27 2.2E-32 231.5 23.0 312 337-661 103-425 (430)
80 KOG1407 WD40 repeat protein [F 100.0 7.3E-27 1.6E-31 220.9 27.1 277 448-904 15-294 (313)
81 KOG1407 WD40 repeat protein [F 100.0 1.5E-26 3.3E-31 218.8 29.0 274 345-653 19-293 (313)
82 KOG0277 Peroxisomal targeting 100.0 1.6E-27 3.4E-32 224.4 21.7 285 349-661 11-308 (311)
83 KOG0274 Cdc4 and related F-box 100.0 5.1E-27 1.1E-31 265.1 29.1 283 345-671 207-490 (537)
84 KOG0310 Conserved WD40 repeat- 100.0 2.9E-27 6.3E-32 243.7 24.6 285 771-1104 25-312 (487)
85 KOG0305 Anaphase promoting com 100.0 6E-27 1.3E-31 252.9 27.4 279 349-664 180-463 (484)
86 KOG0647 mRNA export protein (c 100.0 1.5E-26 3.2E-31 223.6 27.0 274 345-651 26-312 (347)
87 KOG0772 Uncharacterized conser 100.0 6.7E-27 1.5E-31 241.3 25.3 297 771-1104 166-491 (641)
88 KOG0313 Microtubule binding pr 100.0 1.5E-26 3.3E-31 230.4 26.8 282 451-911 103-417 (423)
89 KOG0973 Histone transcription 100.0 6.5E-27 1.4E-31 265.0 26.7 303 771-1104 12-358 (942)
90 KOG0640 mRNA cleavage stimulat 100.0 7.9E-27 1.7E-31 225.4 22.4 253 404-664 108-385 (430)
91 KOG1446 Histone H3 (Lys4) meth 100.0 4E-25 8.7E-30 216.6 34.6 293 489-955 6-304 (311)
92 KOG0305 Anaphase promoting com 100.0 1.4E-26 3E-31 250.1 26.8 262 328-620 198-463 (484)
93 KOG0277 Peroxisomal targeting 100.0 6E-27 1.3E-31 220.5 20.1 270 320-617 34-308 (311)
94 KOG0294 WD40 repeat-containing 100.0 5.8E-26 1.2E-30 220.9 27.6 240 836-1104 40-284 (362)
95 KOG0288 WD40 repeat protein Ti 100.0 2.9E-27 6.3E-32 238.0 17.9 253 404-671 171-425 (459)
96 KOG0283 WD40 repeat-containing 99.9 2.9E-26 6.2E-31 253.4 26.8 272 770-1049 265-578 (712)
97 KOG0308 Conserved WD40 repeat- 99.9 2.4E-26 5.2E-31 244.2 23.8 287 351-662 29-327 (735)
98 KOG0299 U3 snoRNP-associated p 99.9 7.5E-26 1.6E-30 231.4 26.3 285 344-650 140-443 (479)
99 PTZ00420 coronin; Provisional 99.9 5.2E-25 1.1E-29 249.5 36.1 257 365-645 50-319 (568)
100 KOG0301 Phospholipase A2-activ 99.9 1.3E-25 2.8E-30 240.7 28.0 283 337-663 4-289 (745)
101 KOG0308 Conserved WD40 repeat- 99.9 1.7E-26 3.7E-31 245.3 21.1 242 413-664 29-287 (735)
102 PTZ00421 coronin; Provisional 99.9 3.6E-25 7.8E-30 250.6 33.3 254 407-669 19-296 (493)
103 KOG0274 Cdc4 and related F-box 99.9 2.1E-25 4.7E-30 252.0 30.1 243 407-672 207-450 (537)
104 KOG0289 mRNA splicing factor [ 99.9 3.9E-25 8.5E-30 223.9 28.3 282 347-661 220-505 (506)
105 KOG0300 WD40 repeat-containing 99.9 6.9E-26 1.5E-30 219.3 21.9 297 337-664 138-478 (481)
106 KOG0641 WD40 repeat protein [G 99.9 1.8E-24 3.8E-29 199.6 29.3 307 771-1101 31-349 (350)
107 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4.2E-30 228.4 25.5 252 404-666 138-414 (479)
108 KOG0772 Uncharacterized conser 99.9 2.5E-25 5.5E-30 229.7 25.2 303 533-955 159-488 (641)
109 KOG0294 WD40 repeat-containing 99.9 1E-24 2.2E-29 212.3 27.3 244 403-664 38-283 (362)
110 KOG0300 WD40 repeat-containing 99.9 2E-25 4.4E-30 216.1 22.1 331 578-1049 139-478 (481)
111 KOG0268 Sof1-like rRNA process 99.9 2.4E-26 5.2E-31 227.3 15.5 282 345-664 65-347 (433)
112 KOG0647 mRNA export protein (c 99.9 1.4E-24 2.9E-29 210.1 26.5 249 405-664 24-283 (347)
113 KOG0268 Sof1-like rRNA process 99.9 3.7E-26 8.1E-31 226.0 15.7 200 448-664 61-261 (433)
114 KOG1036 Mitotic spindle checkp 99.9 3.3E-24 7.2E-29 208.7 28.0 268 346-652 13-294 (323)
115 KOG2096 WD40 repeat protein [G 99.9 3E-24 6.5E-29 208.7 26.6 257 774-1049 134-404 (420)
116 KOG0289 mRNA splicing factor [ 99.9 2.3E-24 5E-29 218.3 26.5 240 409-661 220-461 (506)
117 KOG2096 WD40 repeat protein [G 99.9 2.3E-24 5E-29 209.4 24.6 310 402-867 80-400 (420)
118 KOG1963 WD40 repeat protein [G 99.9 2.3E-22 5.1E-27 223.1 43.6 559 413-1104 21-653 (792)
119 KOG1274 WD40 repeat protein [G 99.9 4.6E-21 1E-25 212.8 53.5 277 345-659 12-297 (933)
120 PTZ00420 coronin; Provisional 99.9 1.4E-23 3E-28 238.0 34.2 228 426-664 50-295 (568)
121 KOG0639 Transducin-like enhanc 99.9 1.3E-24 2.8E-29 223.3 20.7 293 338-661 411-703 (705)
122 KOG0264 Nucleosome remodeling 99.9 3.7E-24 8.1E-29 219.6 23.8 267 338-619 116-405 (422)
123 KOG1963 WD40 repeat protein [G 99.9 3.4E-22 7.4E-27 221.8 40.9 510 457-1109 20-591 (792)
124 KOG0301 Phospholipase A2-activ 99.9 3.4E-24 7.3E-29 229.9 23.5 274 769-1101 11-288 (745)
125 KOG1332 Vesicle coat complex C 99.9 1.8E-24 4E-29 202.7 18.2 252 404-662 7-286 (299)
126 KOG0639 Transducin-like enhanc 99.9 6.7E-24 1.5E-28 218.1 21.4 282 771-1100 418-703 (705)
127 KOG4283 Transcription-coupled 99.9 8.5E-23 1.8E-27 196.4 25.6 301 344-661 41-364 (397)
128 KOG1036 Mitotic spindle checkp 99.9 1.8E-22 3.8E-27 196.8 27.5 243 406-665 11-265 (323)
129 KOG0646 WD40 repeat protein [G 99.9 3.6E-23 7.9E-28 212.4 23.6 225 407-643 80-330 (476)
130 KOG1273 WD40 repeat protein [G 99.9 2.2E-22 4.7E-27 195.6 25.1 295 335-664 13-324 (405)
131 KOG0646 WD40 repeat protein [G 99.9 3.3E-22 7.1E-27 205.5 26.8 296 566-991 17-336 (476)
132 KOG2055 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 206.9 24.4 288 346-662 213-512 (514)
133 KOG2055 WD40 repeat protein [G 99.9 1.7E-22 3.8E-27 206.7 24.2 290 496-912 212-512 (514)
134 KOG1273 WD40 repeat protein [G 99.9 3E-22 6.5E-27 194.6 23.3 253 411-675 26-292 (405)
135 KOG1332 Vesicle coat complex C 99.9 6.8E-23 1.5E-27 192.3 17.8 253 345-619 10-287 (299)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.4E-20 3E-25 208.0 39.7 292 469-934 3-300 (300)
137 KOG1274 WD40 repeat protein [G 99.9 8.1E-22 1.8E-26 218.7 29.0 269 771-1086 12-285 (933)
138 KOG4328 WD40 protein [Function 99.9 5.9E-22 1.3E-26 202.7 25.1 294 345-662 185-495 (498)
139 KOG1538 Uncharacterized conser 99.9 9.8E-22 2.1E-26 208.7 27.1 273 348-663 14-294 (1081)
140 KOG0264 Nucleosome remodeling 99.9 3.7E-22 8E-27 205.1 22.3 252 405-663 121-405 (422)
141 KOG0267 Microtubule severing p 99.9 1.1E-23 2.4E-28 226.8 10.8 235 405-653 25-259 (825)
142 KOG0321 WD40 repeat-containing 99.9 6.9E-22 1.5E-26 210.1 23.9 291 784-1104 64-394 (720)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-20 3.3E-25 207.6 36.0 276 361-672 3-288 (300)
144 KOG0650 WD40 repeat nucleolar 99.9 2.2E-21 4.8E-26 204.4 26.0 317 447-951 394-732 (733)
145 KOG4283 Transcription-coupled 99.9 5.1E-21 1.1E-25 184.3 25.6 318 770-1119 41-378 (397)
146 KOG2445 Nuclear pore complex c 99.9 3.7E-20 8E-25 180.0 26.4 256 838-1101 12-318 (361)
147 KOG0270 WD40 repeat-containing 99.9 1E-20 2.2E-25 193.3 23.4 253 411-669 176-456 (463)
148 KOG0269 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 212.3 18.1 245 348-620 89-342 (839)
149 KOG0269 WD40 repeat-containing 99.9 3.1E-21 6.7E-26 209.9 20.2 297 346-664 39-342 (839)
150 KOG0321 WD40 repeat-containing 99.9 1E-20 2.2E-25 201.3 23.3 291 351-664 54-393 (720)
151 KOG0650 WD40 repeat nucleolar 99.9 2E-20 4.4E-25 197.3 24.4 292 336-659 389-732 (733)
152 KOG1009 Chromatin assembly com 99.9 5.7E-20 1.2E-24 185.7 25.6 303 346-664 13-374 (434)
153 KOG4378 Nuclear protein COP1 [ 99.9 9.9E-21 2.1E-25 194.8 19.7 293 738-1080 5-303 (673)
154 KOG1538 Uncharacterized conser 99.9 1.7E-19 3.7E-24 191.9 29.1 414 543-1111 14-496 (1081)
155 KOG2445 Nuclear pore complex c 99.9 2.2E-19 4.7E-24 174.7 25.6 255 404-662 9-318 (361)
156 KOG1034 Transcriptional repres 99.9 1E-19 2.2E-24 178.5 23.2 289 345-661 37-382 (385)
157 KOG0267 Microtubule severing p 99.9 1.3E-21 2.7E-26 211.0 10.4 233 345-609 27-259 (825)
158 KOG0307 Vesicle coat complex C 99.9 4.8E-21 1E-25 218.6 15.1 252 407-664 63-329 (1049)
159 KOG1034 Transcriptional repres 99.8 1.2E-19 2.7E-24 178.0 21.7 300 771-1101 37-383 (385)
160 COG2319 FOG: WD40 repeat [Gene 99.8 4E-17 8.6E-22 191.4 47.6 372 404-955 61-443 (466)
161 KOG2919 Guanine nucleotide-bin 99.8 2.9E-19 6.3E-24 174.8 22.1 288 349-653 52-361 (406)
162 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-16 3.3E-21 186.4 49.9 289 344-664 63-361 (466)
163 KOG4497 Uncharacterized conser 99.8 3.3E-19 7.1E-24 174.6 21.9 407 413-947 13-425 (447)
164 KOG1009 Chromatin assembly com 99.8 9.8E-19 2.1E-23 176.9 25.5 300 772-1104 13-375 (434)
165 KOG4378 Nuclear protein COP1 [ 99.8 4.7E-19 1E-23 182.6 23.2 279 368-675 11-293 (673)
166 KOG0302 Ribosome Assembly prot 99.8 4E-19 8.6E-24 177.6 21.8 268 336-615 141-435 (440)
167 KOG4328 WD40 protein [Function 99.8 8.6E-19 1.9E-23 179.8 24.2 209 448-662 181-399 (498)
168 KOG0303 Actin-binding protein 99.8 1.5E-18 3.3E-23 174.3 23.7 248 419-673 43-305 (472)
169 KOG0302 Ribosome Assembly prot 99.8 1.4E-18 3E-23 173.8 21.9 248 404-659 147-435 (440)
170 KOG0270 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 178.7 21.4 293 320-623 145-454 (463)
171 KOG1524 WD40 repeat-containing 99.8 7.4E-17 1.6E-21 168.2 33.7 493 406-1050 12-526 (737)
172 KOG0307 Vesicle coat complex C 99.8 4.1E-19 8.9E-24 203.0 18.2 260 338-621 56-330 (1049)
173 KOG2919 Guanine nucleotide-bin 99.8 1.1E-17 2.4E-22 163.8 24.7 284 771-1089 48-358 (406)
174 KOG1912 WD40 repeat protein [G 99.8 1E-16 2.3E-21 174.3 33.7 542 345-1047 14-656 (1062)
175 KOG0303 Actin-binding protein 99.8 7.1E-18 1.5E-22 169.6 22.0 235 403-644 76-321 (472)
176 KOG4497 Uncharacterized conser 99.8 2.9E-17 6.3E-22 161.1 22.8 379 546-1094 13-425 (447)
177 KOG1912 WD40 repeat protein [G 99.8 8.6E-16 1.9E-20 167.3 33.9 561 409-1103 16-658 (1062)
178 KOG1524 WD40 repeat-containing 99.8 1.5E-16 3.3E-21 165.9 25.6 272 345-660 13-284 (737)
179 KOG0642 Cell-cycle nuclear pro 99.8 6E-18 1.3E-22 178.5 14.5 257 404-671 290-569 (577)
180 KOG1334 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 173.4 14.2 298 340-664 135-468 (559)
181 KOG4227 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 159.2 22.1 296 343-662 53-387 (609)
182 KOG0649 WD40 repeat protein [G 99.7 8.8E-16 1.9E-20 144.5 25.7 288 774-1098 12-313 (325)
183 KOG1188 WD40 repeat protein [G 99.7 8.1E-17 1.8E-21 159.5 19.8 275 360-662 41-346 (376)
184 KOG0322 G-protein beta subunit 99.7 4.5E-17 9.7E-22 155.3 17.3 304 579-953 6-322 (323)
185 KOG1310 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 166.4 22.7 242 403-673 45-314 (758)
186 KOG0771 Prolactin regulatory e 99.7 1.9E-17 4.2E-22 169.3 15.6 200 885-1103 148-356 (398)
187 KOG1188 WD40 repeat protein [G 99.7 3E-17 6.4E-22 162.6 16.3 292 469-801 42-345 (376)
188 KOG0649 WD40 repeat protein [G 99.7 7.2E-16 1.6E-20 145.1 24.5 281 348-659 12-313 (325)
189 KOG0642 Cell-cycle nuclear pro 99.7 2E-17 4.2E-22 174.7 15.6 267 342-629 289-572 (577)
190 KOG1007 WD repeat protein TSSC 99.7 1.1E-16 2.3E-21 154.5 18.3 215 337-574 112-360 (370)
191 KOG2110 Uncharacterized conser 99.7 1E-14 2.3E-19 146.5 32.6 242 408-664 5-250 (391)
192 KOG0322 G-protein beta subunit 99.7 5.1E-17 1.1E-21 154.8 15.2 288 340-661 7-322 (323)
193 KOG0644 Uncharacterized conser 99.7 5.3E-18 1.2E-22 185.6 9.5 247 404-664 186-470 (1113)
194 KOG0290 Conserved WD40 repeat- 99.7 1.2E-15 2.5E-20 147.7 24.1 290 339-658 37-361 (364)
195 KOG4227 WD40 repeat protein [G 99.7 6.7E-16 1.4E-20 154.7 21.9 309 769-1102 53-388 (609)
196 KOG1007 WD repeat protein TSSC 99.7 9.7E-16 2.1E-20 148.0 22.1 256 344-618 61-361 (370)
197 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3E-20 170.8 26.0 272 327-619 224-517 (555)
198 PRK11028 6-phosphogluconolacto 99.7 1.5E-14 3.3E-19 160.7 34.1 273 361-662 4-304 (330)
199 PRK11028 6-phosphogluconolacto 99.7 2.4E-14 5.2E-19 159.2 34.3 267 324-618 11-304 (330)
200 KOG1517 Guanine nucleotide bin 99.7 3.1E-15 6.7E-20 168.6 25.0 303 455-915 1066-1384(1387)
201 KOG1587 Cytoplasmic dynein int 99.7 5.9E-15 1.3E-19 165.7 25.5 250 407-664 241-518 (555)
202 KOG0644 Uncharacterized conser 99.7 1.5E-16 3.2E-21 174.5 12.2 286 534-957 183-471 (1113)
203 KOG0290 Conserved WD40 repeat- 99.7 7.5E-15 1.6E-19 142.1 21.3 262 332-614 80-361 (364)
204 KOG1517 Guanine nucleotide bin 99.7 1.2E-14 2.6E-19 163.9 26.2 196 852-1050 1178-1384(1387)
205 KOG2110 Uncharacterized conser 99.7 2.7E-14 5.9E-19 143.5 25.2 240 840-1104 5-251 (391)
206 KOG1240 Protein kinase contain 99.7 3.1E-14 6.8E-19 163.4 28.4 255 404-664 1044-1336(1431)
207 PRK01742 tolB translocation pr 99.7 1.3E-14 2.8E-19 166.0 24.8 235 368-643 183-426 (429)
208 PF02239 Cytochrom_D1: Cytochr 99.7 1.1E-13 2.4E-18 152.2 31.0 323 512-961 6-354 (369)
209 KOG2041 WD40 repeat protein [G 99.6 3.8E-13 8.3E-18 145.3 31.5 569 346-1049 14-621 (1189)
210 KOG1523 Actin-related protein 99.6 1.5E-14 3.4E-19 142.3 18.9 237 346-609 10-269 (361)
211 KOG0974 WD-repeat protein WDR6 99.6 7.4E-12 1.6E-16 142.9 43.1 151 350-529 137-288 (967)
212 COG4946 Uncharacterized protei 99.6 2.3E-11 5E-16 126.0 42.5 142 773-943 360-507 (668)
213 PF02239 Cytochrom_D1: Cytochr 99.6 1.5E-12 3.3E-17 143.3 36.4 332 468-921 7-356 (369)
214 KOG2139 WD40 repeat protein [G 99.6 2E-13 4.2E-18 136.6 26.2 287 346-662 98-431 (445)
215 KOG0771 Prolactin regulatory e 99.6 3.6E-15 7.8E-20 152.9 14.2 197 844-1048 148-355 (398)
216 KOG1832 HIV-1 Vpr-binding prot 99.6 6.4E-16 1.4E-20 170.1 9.1 301 168-606 1012-1319(1516)
217 KOG1240 Protein kinase contain 99.6 1.7E-13 3.8E-18 157.5 25.9 269 335-619 1036-1335(1431)
218 KOG2321 WD40 repeat protein [G 99.6 8.7E-14 1.9E-18 147.2 21.7 286 338-662 43-343 (703)
219 KOG0974 WD-repeat protein WDR6 99.6 1.5E-11 3.3E-16 140.4 41.1 194 348-576 89-289 (967)
220 PRK01742 tolB translocation pr 99.6 7E-14 1.5E-18 160.0 22.9 235 327-599 184-426 (429)
221 KOG2111 Uncharacterized conser 99.6 6.5E-12 1.4E-16 124.1 31.0 240 410-664 7-258 (346)
222 KOG2111 Uncharacterized conser 99.6 6.2E-13 1.3E-17 131.2 23.8 243 840-1105 5-260 (346)
223 COG4946 Uncharacterized protei 99.6 3.2E-10 6.9E-15 117.7 44.4 522 335-1048 67-655 (668)
224 KOG1272 WD40-repeat-containing 99.6 9.4E-15 2E-19 150.6 11.6 279 347-664 130-411 (545)
225 PF04762 IKI3: IKI3 family; I 99.6 7.1E-09 1.5E-13 126.9 63.2 506 407-1101 74-639 (928)
226 KOG1523 Actin-related protein 99.6 3.1E-13 6.8E-18 133.2 19.8 235 407-653 9-269 (361)
227 KOG2139 WD40 repeat protein [G 99.6 2.1E-12 4.6E-17 129.3 25.8 204 840-1047 195-431 (445)
228 PRK03629 tolB translocation pr 99.6 2.5E-12 5.4E-17 146.7 30.0 236 370-642 180-427 (429)
229 KOG1334 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 142.9 17.7 299 770-1107 140-472 (559)
230 KOG2041 WD40 repeat protein [G 99.5 3.6E-11 7.7E-16 130.4 36.0 521 339-1002 63-618 (1189)
231 KOG2394 WD40 protein DMR-N9 [G 99.5 3.6E-13 7.8E-18 141.6 18.8 117 840-957 290-455 (636)
232 PRK03629 tolB translocation pr 99.5 2.2E-12 4.7E-17 147.2 26.5 238 327-598 179-427 (429)
233 PF04762 IKI3: IKI3 family; I 99.5 1.1E-08 2.3E-13 125.4 59.4 573 345-1051 74-688 (928)
234 KOG1272 WD40-repeat-containing 99.5 4.2E-14 9E-19 145.9 10.5 231 409-660 130-360 (545)
235 KOG2315 Predicted translation 99.5 3.6E-11 7.7E-16 128.1 32.5 251 817-1101 106-390 (566)
236 PRK04922 tolB translocation pr 99.5 4.5E-12 9.7E-17 145.6 27.5 223 404-642 199-432 (433)
237 PRK02889 tolB translocation pr 99.5 3E-12 6.4E-17 146.4 25.9 239 326-598 175-424 (427)
238 KOG1310 WD40 repeat protein [G 99.5 1.4E-13 3E-18 144.6 13.4 238 345-626 49-311 (758)
239 PRK05137 tolB translocation pr 99.5 9.6E-12 2.1E-16 143.1 29.3 222 404-642 197-432 (435)
240 PRK04922 tolB translocation pr 99.5 3.4E-12 7.4E-17 146.5 25.5 237 328-598 185-432 (433)
241 KOG2394 WD40 protein DMR-N9 [G 99.5 4.4E-13 9.6E-18 140.9 16.3 156 346-506 219-383 (636)
242 PRK05137 tolB translocation pr 99.5 1E-11 2.2E-16 142.9 29.3 215 861-1104 182-415 (435)
243 KOG1409 Uncharacterized conser 99.5 3.1E-12 6.7E-17 127.4 20.3 345 578-1048 15-395 (404)
244 COG5354 Uncharacterized protei 99.5 5E-11 1.1E-15 125.3 30.1 360 524-1039 15-421 (561)
245 PRK02889 tolB translocation pr 99.5 6.5E-12 1.4E-16 143.6 26.2 222 405-642 192-424 (427)
246 KOG3881 Uncharacterized conser 99.5 5.1E-12 1.1E-16 128.4 22.0 272 346-642 55-341 (412)
247 KOG2315 Predicted translation 99.5 7.3E-11 1.6E-15 125.8 29.8 334 541-955 34-391 (566)
248 KOG2321 WD40 repeat protein [G 99.4 2.5E-11 5.5E-16 128.9 24.4 201 451-664 49-260 (703)
249 COG2706 3-carboxymuconate cycl 99.4 4.3E-10 9.4E-15 114.5 32.3 254 840-1109 39-329 (346)
250 KOG1354 Serine/threonine prote 99.4 6.7E-11 1.4E-15 117.9 24.7 190 453-664 25-246 (433)
251 KOG2314 Translation initiation 99.4 8E-11 1.7E-15 124.6 25.4 318 315-664 213-575 (698)
252 KOG3881 Uncharacterized conser 99.4 3.7E-11 8E-16 122.2 21.0 159 785-961 161-327 (412)
253 PRK01029 tolB translocation pr 99.4 1.1E-10 2.3E-15 132.6 27.5 244 327-600 165-426 (428)
254 COG5354 Uncharacterized protei 99.4 3.8E-10 8.2E-15 118.8 28.4 313 314-664 34-397 (561)
255 KOG1354 Serine/threonine prote 99.4 4.3E-11 9.4E-16 119.2 19.9 260 346-620 25-361 (433)
256 PF10282 Lactonase: Lactonase, 99.4 1.2E-08 2.7E-13 113.1 41.5 231 423-661 2-274 (345)
257 PF08662 eIF2A: Eukaryotic tra 99.4 4.7E-11 1E-15 119.1 19.8 110 840-955 59-180 (194)
258 TIGR02800 propeller_TolB tol-p 99.4 2.2E-10 4.8E-15 132.5 27.6 204 861-1093 170-386 (417)
259 PF08662 eIF2A: Eukaryotic tra 99.3 9.8E-11 2.1E-15 116.8 20.7 163 412-583 9-186 (194)
260 PRK00178 tolB translocation pr 99.3 2.8E-10 6.2E-15 131.4 27.3 238 328-598 180-427 (430)
261 COG2706 3-carboxymuconate cycl 99.3 1.3E-08 2.7E-13 104.0 35.0 300 520-933 15-345 (346)
262 PF10282 Lactonase: Lactonase, 99.3 5.8E-09 1.3E-13 115.7 36.2 247 408-662 36-322 (345)
263 PRK04792 tolB translocation pr 99.3 2.3E-10 4.9E-15 131.1 25.1 238 328-598 199-446 (448)
264 TIGR02658 TTQ_MADH_Hv methylam 99.3 9.2E-09 2E-13 110.2 35.1 203 845-1056 109-339 (352)
265 PRK00178 tolB translocation pr 99.3 1.1E-09 2.4E-14 126.6 30.0 222 405-642 195-427 (430)
266 PRK04792 tolB translocation pr 99.3 7.6E-10 1.6E-14 126.9 28.3 223 404-642 213-446 (448)
267 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.6E-09 7.9E-14 113.2 30.7 238 848-1104 53-333 (352)
268 KOG2314 Translation initiation 99.3 2.1E-09 4.6E-14 114.1 27.9 292 774-1101 251-573 (698)
269 PRK01029 tolB translocation pr 99.3 1.8E-09 3.8E-14 122.7 29.8 226 405-644 181-426 (428)
270 TIGR02800 propeller_TolB tol-p 99.3 7.1E-10 1.5E-14 128.2 26.7 226 327-585 170-406 (417)
271 KOG4547 WD40 repeat-containing 99.2 7E-10 1.5E-14 119.6 20.9 194 417-619 2-221 (541)
272 KOG2659 LisH motif-containing 99.2 1.8E-10 4E-15 110.9 12.4 170 3-182 24-204 (228)
273 KOG4547 WD40 repeat-containing 99.2 3.7E-09 8E-14 114.2 23.5 190 360-575 6-220 (541)
274 TIGR03300 assembly_YfgL outer 99.2 5.7E-08 1.2E-12 110.3 33.0 145 469-626 67-216 (377)
275 KOG0280 Uncharacterized conser 99.2 4.7E-09 1E-13 103.0 20.2 250 346-620 69-335 (339)
276 KOG0309 Conserved WD40 repeat- 99.2 2.9E-10 6.2E-15 124.2 13.0 284 312-619 24-340 (1081)
277 PLN02919 haloacid dehalogenase 99.1 4E-08 8.8E-13 123.0 31.7 257 844-1104 571-891 (1057)
278 KOG1409 Uncharacterized conser 99.1 4.1E-09 9E-14 105.6 18.1 212 448-674 19-239 (404)
279 KOG0280 Uncharacterized conser 99.1 1.6E-08 3.5E-13 99.3 20.0 200 843-1050 124-336 (339)
280 PLN02919 haloacid dehalogenase 99.0 3.2E-07 7E-12 115.1 34.6 74 884-958 806-892 (1057)
281 TIGR03300 assembly_YfgL outer 99.0 1.2E-07 2.6E-12 107.6 28.1 286 329-659 77-376 (377)
282 PRK04043 tolB translocation pr 99.0 2.1E-07 4.5E-12 105.0 28.3 217 326-576 168-401 (419)
283 KOG1064 RAVE (regulator of V-A 99.0 3.2E-09 6.9E-14 127.4 12.7 201 404-628 2204-2408(2439)
284 KOG4190 Uncharacterized conser 99.0 5.8E-09 1.3E-13 110.2 12.8 245 402-660 729-986 (1034)
285 PF15492 Nbas_N: Neuroblastoma 98.9 1E-06 2.2E-11 87.6 24.6 189 840-1058 43-270 (282)
286 KOG3617 WD40 and TPR repeat-co 98.9 1.5E-06 3.2E-11 97.3 28.1 553 412-1090 19-627 (1416)
287 KOG0309 Conserved WD40 repeat- 98.9 4.9E-08 1.1E-12 107.2 16.4 295 340-664 18-341 (1081)
288 KOG3914 WD repeat protein WDR4 98.8 2.5E-08 5.3E-13 102.8 12.5 165 348-538 64-232 (390)
289 KOG1064 RAVE (regulator of V-A 98.8 1.3E-08 2.8E-13 122.4 11.8 224 420-672 2180-2407(2439)
290 PRK04043 tolB translocation pr 98.8 1.2E-06 2.7E-11 98.8 27.3 209 861-1101 169-398 (419)
291 PF07433 DUF1513: Protein of u 98.8 4.7E-06 1E-10 86.0 27.3 207 844-1056 8-256 (305)
292 PF15492 Nbas_N: Neuroblastoma 98.8 1.9E-06 4.1E-11 85.7 23.3 234 846-1109 3-269 (282)
293 KOG1832 HIV-1 Vpr-binding prot 98.8 4E-09 8.6E-14 117.6 4.8 215 404-649 1097-1318(1516)
294 KOG4190 Uncharacterized conser 98.8 3E-08 6.4E-13 105.0 10.6 210 838-1058 734-959 (1034)
295 PRK11138 outer membrane biogen 98.7 7.6E-06 1.6E-10 93.2 29.8 306 512-953 70-393 (394)
296 PRK11138 outer membrane biogen 98.7 1.2E-05 2.5E-10 91.7 30.9 189 469-665 71-277 (394)
297 COG5170 CDC55 Serine/threonine 98.7 2.5E-07 5.3E-12 91.5 14.4 248 407-662 25-367 (460)
298 KOG4532 WD40-like repeat conta 98.7 1.9E-06 4.2E-11 83.8 20.1 176 362-560 131-321 (344)
299 PF07433 DUF1513: Protein of u 98.7 1.3E-05 2.8E-10 82.8 27.4 234 348-612 6-279 (305)
300 KOG3914 WD repeat protein WDR4 98.7 2.1E-07 4.5E-12 96.2 13.9 157 928-1104 66-226 (390)
301 KOG1897 Damage-specific DNA bi 98.7 0.0019 4.1E-08 75.3 48.2 286 775-1108 586-905 (1096)
302 KOG4532 WD40-like repeat conta 98.7 3.7E-06 7.9E-11 81.9 20.8 232 419-662 83-331 (344)
303 KOG0882 Cyclophilin-related pe 98.7 1.2E-06 2.6E-11 91.3 18.4 214 451-673 7-241 (558)
304 COG5170 CDC55 Serine/threonine 98.7 6.6E-07 1.4E-11 88.5 15.3 257 346-617 26-366 (460)
305 PF08450 SGL: SMP-30/Gluconola 98.6 3.7E-05 8E-10 81.3 29.6 219 413-651 4-244 (246)
306 PF08450 SGL: SMP-30/Gluconola 98.6 7E-05 1.5E-09 79.2 30.6 221 351-607 4-244 (246)
307 PF13360 PQQ_2: PQQ-like domai 98.6 5.4E-06 1.2E-10 87.5 22.1 225 860-1108 2-237 (238)
308 KOG4714 Nucleoporin [Nuclear s 98.6 8E-07 1.7E-11 86.0 13.8 209 349-576 39-255 (319)
309 PF13360 PQQ_2: PQQ-like domai 98.6 1.5E-05 3.3E-10 84.0 25.1 221 428-666 1-234 (238)
310 KOG4649 PQQ (pyrrolo-quinoline 98.6 6.6E-05 1.4E-09 73.2 25.5 143 354-524 18-160 (354)
311 KOG4714 Nucleoporin [Nuclear s 98.6 3.6E-06 7.8E-11 81.7 17.0 95 861-955 159-255 (319)
312 PRK02888 nitrous-oxide reducta 98.6 2E-05 4.4E-10 89.0 25.5 155 848-1010 284-481 (635)
313 PRK02888 nitrous-oxide reducta 98.5 4.6E-05 9.9E-10 86.3 27.6 102 840-943 320-450 (635)
314 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00039 8.5E-09 67.9 29.9 140 512-660 24-163 (354)
315 KOG2695 WD40 repeat protein [G 98.5 3.2E-07 7E-12 92.3 8.9 165 352-540 217-387 (425)
316 KOG1645 RING-finger-containing 98.5 2.6E-05 5.7E-10 80.7 22.7 249 403-662 188-461 (463)
317 KOG1920 IkappaB kinase complex 98.5 2E-05 4.3E-10 93.0 24.6 279 771-1101 67-365 (1265)
318 KOG1920 IkappaB kinase complex 98.5 0.00039 8.5E-09 82.6 34.0 274 590-953 70-364 (1265)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 5.4E-05 1.2E-09 84.5 26.0 266 355-652 1-347 (353)
320 KOG1275 PAB-dependent poly(A) 98.5 2.8E-06 6.1E-11 96.4 15.2 180 851-1045 146-340 (1118)
321 PF00400 WD40: WD domain, G-be 98.4 5.4E-07 1.2E-11 63.3 6.1 39 914-952 1-39 (39)
322 KOG2114 Vacuolar assembly/sort 98.4 2.3E-05 5E-10 89.1 21.4 202 846-1055 29-251 (933)
323 PF06433 Me-amine-dh_H: Methyl 98.4 9.3E-05 2E-09 77.5 24.4 204 845-1056 99-329 (342)
324 PF06433 Me-amine-dh_H: Methyl 98.4 9.8E-05 2.1E-09 77.3 23.5 286 567-923 17-331 (342)
325 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.5E-11 88.4 8.7 162 459-629 217-387 (425)
326 KOG0882 Cyclophilin-related pe 98.4 3.6E-06 7.7E-11 88.0 12.5 213 880-1104 8-234 (558)
327 KOG3617 WD40 and TPR repeat-co 98.4 1.1E-05 2.4E-10 90.5 16.6 343 592-1090 19-374 (1416)
328 KOG0396 Uncharacterized conser 98.3 4E-06 8.6E-11 85.9 11.9 119 6-126 116-243 (389)
329 KOG2114 Vacuolar assembly/sort 98.3 3E-05 6.5E-10 88.1 18.9 206 888-1110 30-252 (933)
330 KOG3621 WD40 repeat-containing 98.3 0.00011 2.3E-09 82.1 22.4 286 346-668 33-359 (726)
331 KOG1897 Damage-specific DNA bi 98.3 0.02 4.4E-07 67.2 56.5 226 852-1102 684-943 (1096)
332 PF00400 WD40: WD domain, G-be 98.3 2.9E-06 6.4E-11 59.5 6.7 39 871-910 1-39 (39)
333 KOG2066 Vacuolar assembly/sort 98.3 2.1E-05 4.6E-10 88.7 16.5 188 881-1101 39-233 (846)
334 PF10607 CLTH: CTLH/CRA C-term 98.3 4E-06 8.8E-11 79.8 9.3 135 38-182 5-141 (145)
335 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00038 8.3E-09 77.7 26.4 267 332-607 28-346 (353)
336 PF14583 Pectate_lyase22: Olig 98.2 0.007 1.5E-07 65.1 32.9 282 350-661 39-380 (386)
337 KOG2066 Vacuolar assembly/sort 98.2 0.00017 3.7E-09 81.7 20.5 185 775-1003 42-233 (846)
338 KOG1645 RING-finger-containing 98.2 9.8E-05 2.1E-09 76.6 17.0 237 863-1111 175-429 (463)
339 PF04053 Coatomer_WDAD: Coatom 98.1 0.00055 1.2E-08 77.1 23.0 220 840-1104 32-265 (443)
340 PF11768 DUF3312: Protein of u 98.1 0.00034 7.4E-09 77.3 19.8 139 327-488 186-332 (545)
341 KOG1275 PAB-dependent poly(A) 98.0 9.1E-05 2E-09 84.7 15.5 185 469-661 149-341 (1118)
342 PF08513 LisH: LisH; InterPro 98.0 7.3E-06 1.6E-10 50.7 3.7 27 6-32 1-27 (27)
343 cd00216 PQQ_DH Dehydrogenases 98.0 0.007 1.5E-07 70.7 31.5 110 512-628 62-193 (488)
344 PF14583 Pectate_lyase22: Olig 98.0 0.01 2.2E-07 63.9 28.6 231 412-653 39-303 (386)
345 KOG3621 WD40 repeat-containing 98.0 0.00056 1.2E-08 76.6 19.6 156 771-955 32-198 (726)
346 PF11768 DUF3312: Protein of u 97.9 0.0004 8.8E-09 76.8 17.9 114 840-956 205-331 (545)
347 PF02897 Peptidase_S9_N: Proly 97.9 0.0082 1.8E-07 69.2 30.1 250 349-623 126-409 (414)
348 cd00216 PQQ_DH Dehydrogenases 97.9 0.0046 1E-07 72.2 27.7 278 362-671 64-432 (488)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.054 1.2E-06 63.5 35.9 110 512-627 70-198 (527)
350 COG0823 TolB Periplasmic compo 97.9 0.00061 1.3E-08 76.5 18.7 176 861-1053 173-364 (425)
351 COG0823 TolB Periplasmic compo 97.9 0.0011 2.4E-08 74.5 20.6 205 327-560 173-388 (425)
352 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0071 1.5E-07 68.4 26.9 197 846-1056 34-255 (410)
353 PF08596 Lgl_C: Lethal giant l 97.8 0.0099 2.2E-07 66.2 27.0 242 410-661 3-334 (395)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.076 1.7E-06 62.3 35.7 196 420-623 69-338 (527)
355 smart00667 LisH Lissencephaly 97.8 2.4E-05 5.2E-10 52.7 4.1 31 5-35 3-33 (34)
356 PF08596 Lgl_C: Lethal giant l 97.8 0.0076 1.6E-07 67.1 25.8 252 348-606 3-324 (395)
357 PF06977 SdiA-regulated: SdiA- 97.8 0.0099 2.1E-07 61.2 24.1 191 346-559 21-239 (248)
358 smart00668 CTLH C-terminal to 97.8 2.5E-05 5.4E-10 60.5 4.1 52 38-90 5-56 (58)
359 PF04053 Coatomer_WDAD: Coatom 97.8 0.0048 1E-07 69.6 23.8 222 406-664 30-264 (443)
360 COG3391 Uncharacterized conser 97.8 0.056 1.2E-06 60.8 31.8 268 334-629 18-294 (381)
361 COG3391 Uncharacterized conser 97.7 0.0087 1.9E-07 67.3 24.4 206 843-1056 76-292 (381)
362 PF06977 SdiA-regulated: SdiA- 97.7 0.006 1.3E-07 62.7 20.4 202 840-1044 21-247 (248)
363 KOG1008 Uncharacterized conser 97.7 1.7E-05 3.7E-10 86.9 1.8 202 348-575 58-275 (783)
364 COG3490 Uncharacterized protei 97.5 0.0092 2E-07 59.7 17.9 206 845-1056 72-319 (366)
365 PRK13616 lipoprotein LpqB; Pro 97.5 0.0053 1.2E-07 72.2 19.0 188 841-1042 350-563 (591)
366 PF04841 Vps16_N: Vps16, N-ter 97.5 0.11 2.3E-06 59.0 28.8 231 409-674 81-325 (410)
367 PF00780 CNH: CNH domain; Int 97.5 0.096 2.1E-06 56.4 27.7 231 418-675 5-267 (275)
368 COG3490 Uncharacterized protei 97.4 0.063 1.4E-06 54.0 22.6 249 337-616 58-346 (366)
369 COG3386 Gluconolactonase [Carb 97.4 0.035 7.6E-07 59.4 22.3 220 846-1090 30-274 (307)
370 PF02897 Peptidase_S9_N: Proly 97.4 0.14 3E-06 59.1 29.0 245 410-665 125-407 (414)
371 KOG1008 Uncharacterized conser 97.3 0.00012 2.6E-09 80.5 3.1 203 883-1101 58-275 (783)
372 PF00780 CNH: CNH domain; Int 97.3 0.14 3.1E-06 55.0 26.8 229 357-629 6-266 (275)
373 PRK13616 lipoprotein LpqB; Pro 97.3 0.041 9E-07 64.8 23.5 201 882-1110 350-577 (591)
374 PF03178 CPSF_A: CPSF A subuni 97.2 0.035 7.7E-07 61.2 21.2 225 861-1099 2-263 (321)
375 PF08553 VID27: VID27 cytoplas 97.2 0.019 4E-07 68.5 19.5 146 893-1047 492-647 (794)
376 KOG2817 Predicted E3 ubiquitin 97.2 0.0027 5.8E-08 66.9 10.7 113 6-119 117-241 (394)
377 cd08044 TAF5_NTD2 TAF5_NTD2 is 97.2 0.001 2.2E-08 61.4 6.8 82 67-149 25-113 (133)
378 PF03178 CPSF_A: CPSF A subuni 97.2 0.053 1.2E-06 59.8 21.7 177 370-575 3-202 (321)
379 COG3386 Gluconolactonase [Carb 97.1 0.17 3.6E-06 54.4 23.4 226 351-607 29-274 (307)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.29 6.3E-06 54.4 25.8 86 540-629 306-409 (415)
381 KOG4640 Anaphase-promoting com 97.0 0.0024 5.1E-08 70.9 9.1 94 882-984 21-115 (665)
382 PF04494 TFIID_90kDa: WD40 ass 97.0 0.0014 2.9E-08 61.4 5.9 82 67-149 36-124 (142)
383 PRK10115 protease 2; Provision 96.9 1.4 3E-05 53.9 32.5 243 410-664 128-396 (686)
384 smart00320 WD40 WD40 repeats. 96.9 0.0023 5.1E-08 44.0 5.6 39 914-952 2-40 (40)
385 PF05096 Glu_cyclase_2: Glutam 96.9 0.2 4.4E-06 51.2 20.4 197 842-1090 46-250 (264)
386 PF14870 PSII_BNR: Photosynthe 96.8 0.24 5.3E-06 52.7 22.0 159 879-1044 142-301 (302)
387 PF07995 GSDH: Glucose / Sorbo 96.8 0.41 8.8E-06 52.7 24.7 244 842-1096 3-330 (331)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.12 2.6E-06 57.3 20.1 91 413-507 6-118 (415)
389 COG3204 Uncharacterized protei 96.8 0.29 6.2E-06 50.1 20.3 172 878-1056 82-271 (316)
390 KOG2395 Protein involved in va 96.8 0.028 6E-07 61.4 14.0 146 895-1047 347-500 (644)
391 KOG4640 Anaphase-promoting com 96.7 0.0067 1.5E-07 67.5 9.3 92 840-933 20-114 (665)
392 PF15390 DUF4613: Domain of un 96.7 0.074 1.6E-06 59.3 16.7 158 881-1049 19-188 (671)
393 PF10647 Gmad1: Lipoprotein Lp 96.7 0.25 5.3E-06 51.9 20.5 145 841-992 24-183 (253)
394 PF10647 Gmad1: Lipoprotein Lp 96.6 0.72 1.6E-05 48.5 23.5 148 883-1040 25-188 (253)
395 PF05694 SBP56: 56kDa selenium 96.6 0.65 1.4E-05 50.8 22.9 238 783-1036 86-392 (461)
396 smart00320 WD40 WD40 repeats. 96.5 0.0065 1.4E-07 41.6 5.5 39 871-910 2-40 (40)
397 PF14727 PHTB1_N: PTHB1 N-term 96.5 2 4.3E-05 48.1 31.4 289 783-1112 36-371 (418)
398 PF08553 VID27: VID27 cytoplas 96.5 0.068 1.5E-06 63.9 16.4 145 466-617 493-646 (794)
399 PRK10115 protease 2; Provision 96.5 3.4 7.4E-05 50.5 33.6 244 348-621 128-397 (686)
400 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.23 4.9E-06 43.1 15.1 99 843-949 2-109 (111)
401 PF07995 GSDH: Glucose / Sorbo 96.4 2.2 4.7E-05 47.1 27.0 68 590-657 254-330 (331)
402 TIGR03074 PQQ_membr_DH membran 96.3 4.3 9.2E-05 49.7 42.1 201 469-670 196-484 (764)
403 PF05694 SBP56: 56kDa selenium 96.3 2.4 5.3E-05 46.5 25.2 257 337-607 52-392 (461)
404 KOG4441 Proteins containing BT 96.2 0.42 9.1E-06 56.6 21.1 232 419-664 284-548 (571)
405 COG3204 Uncharacterized protei 96.2 1.1 2.3E-05 46.1 20.5 168 405-582 82-269 (316)
406 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.13 2.8E-06 44.6 12.2 102 349-480 2-109 (111)
407 KOG2395 Protein involved in va 96.2 0.11 2.4E-06 56.9 14.5 141 468-616 347-498 (644)
408 PHA02713 hypothetical protein; 96.1 0.45 9.7E-06 56.6 20.8 227 862-1117 273-547 (557)
409 KOG2444 WD40 repeat protein [G 96.1 0.016 3.4E-07 56.6 6.8 104 852-955 70-178 (238)
410 KOG2079 Vacuolar assembly/sort 96.0 0.13 2.9E-06 61.3 14.9 104 893-1002 98-202 (1206)
411 KOG2079 Vacuolar assembly/sort 96.0 0.087 1.9E-06 62.8 13.4 104 419-528 98-202 (1206)
412 KOG1898 Splicing factor 3b, su 96.0 5.6 0.00012 48.2 35.8 105 846-954 939-1048(1205)
413 PF12894 Apc4_WD40: Anaphase-p 96.0 0.021 4.6E-07 41.1 5.3 36 1071-1108 12-47 (47)
414 PF05096 Glu_cyclase_2: Glutam 95.9 2.3 4.9E-05 43.9 21.6 193 771-994 43-250 (264)
415 PHA02713 hypothetical protein; 95.9 0.65 1.4E-05 55.2 20.8 220 431-664 273-535 (557)
416 TIGR03118 PEPCTERM_chp_1 conse 95.8 2.2 4.7E-05 44.3 20.8 208 884-1104 25-282 (336)
417 TIGR03074 PQQ_membr_DH membran 95.8 2.4 5.3E-05 51.8 25.2 204 420-627 194-486 (764)
418 PF12894 Apc4_WD40: Anaphase-p 95.6 0.041 9E-07 39.6 5.5 34 346-381 11-44 (47)
419 KOG4499 Ca2+-binding protein R 95.4 2 4.3E-05 42.4 17.9 142 454-605 109-271 (310)
420 KOG2444 WD40 repeat protein [G 95.4 0.026 5.7E-07 55.1 5.4 105 939-1056 33-141 (238)
421 COG4257 Vgb Streptogramin lyas 95.4 2.2 4.8E-05 43.2 18.4 209 883-1110 63-272 (353)
422 COG4257 Vgb Streptogramin lyas 95.2 4 8.7E-05 41.5 22.7 240 840-1110 61-315 (353)
423 PF10168 Nup88: Nuclear pore c 95.2 3.3 7.2E-05 50.2 23.3 93 840-955 84-180 (717)
424 KOG4499 Ca2+-binding protein R 95.2 3.7 7.9E-05 40.6 20.2 47 845-891 216-263 (310)
425 PF14870 PSII_BNR: Photosynthe 95.1 5.8 0.00013 42.4 30.6 152 840-1000 144-301 (302)
426 KOG4441 Proteins containing BT 95.1 1.7 3.7E-05 51.6 20.2 235 849-1112 282-555 (571)
427 PF12234 Rav1p_C: RAVE protein 95.0 0.67 1.5E-05 54.2 16.2 112 455-574 31-155 (631)
428 PLN00033 photosystem II stabil 95.0 8 0.00017 43.4 26.4 153 884-1044 241-396 (398)
429 PRK13684 Ycf48-like protein; P 94.8 8.2 0.00018 42.5 30.9 157 881-1046 172-330 (334)
430 TIGR02604 Piru_Ver_Nterm putat 94.7 8.6 0.00019 43.2 24.1 138 842-991 15-200 (367)
431 KOG3630 Nuclear pore complex, 94.7 0.29 6.2E-06 58.9 12.2 146 840-991 100-260 (1405)
432 PF14727 PHTB1_N: PTHB1 N-term 94.5 10 0.00023 42.5 33.6 281 356-665 34-363 (418)
433 KOG4460 Nuclear pore complex, 94.3 0.56 1.2E-05 51.5 12.2 95 1018-1112 104-209 (741)
434 PF12234 Rav1p_C: RAVE protein 94.2 1.1 2.5E-05 52.3 15.4 125 876-1002 24-155 (631)
435 PF14761 HPS3_N: Hermansky-Pud 94.1 3 6.4E-05 41.3 15.8 176 895-1101 29-214 (215)
436 COG3823 Glutamine cyclotransfe 94.0 3.3 7.1E-05 40.2 15.2 188 851-1090 55-248 (262)
437 PHA03098 kelch-like protein; P 93.9 2.5 5.5E-05 50.5 18.7 187 850-1051 293-515 (534)
438 PHA03098 kelch-like protein; P 93.5 3 6.6E-05 49.8 18.5 150 512-664 344-513 (534)
439 TIGR03118 PEPCTERM_chp_1 conse 93.4 11 0.00025 39.3 23.2 212 455-673 24-289 (336)
440 TIGR02604 Piru_Ver_Nterm putat 93.3 2.5 5.5E-05 47.4 16.1 151 882-1038 14-204 (367)
441 KOG2280 Vacuolar assembly/sort 93.2 5.3 0.00011 46.7 17.8 182 862-1056 65-255 (829)
442 PHA02790 Kelch-like protein; P 93.0 5.1 0.00011 46.8 18.6 183 851-1049 271-472 (480)
443 KOG3630 Nuclear pore complex, 92.9 1.5 3.3E-05 53.1 13.7 149 926-1087 102-259 (1405)
444 KOG2377 Uncharacterized conser 92.6 6.3 0.00014 43.0 16.4 139 975-1128 67-209 (657)
445 KOG2280 Vacuolar assembly/sort 92.2 14 0.00031 43.3 19.6 178 410-598 85-269 (829)
446 PF15390 DUF4613: Domain of un 91.9 3.7 8E-05 46.5 14.3 174 841-1030 20-215 (671)
447 KOG1900 Nuclear pore complex, 91.9 11 0.00025 47.1 19.5 145 901-1048 96-273 (1311)
448 PF13449 Phytase-like: Esteras 91.9 23 0.0005 38.9 22.3 152 881-1034 19-231 (326)
449 PF10168 Nup88: Nuclear pore c 91.8 1.5 3.4E-05 52.9 12.5 85 1017-1104 84-182 (717)
450 KOG2247 WD40 repeat-containing 91.8 0.035 7.5E-07 60.1 -1.1 241 777-1055 39-288 (615)
451 KOG2377 Uncharacterized conser 91.8 5.7 0.00012 43.3 15.0 154 870-1033 5-169 (657)
452 KOG1916 Nuclear protein, conta 91.8 0.11 2.3E-06 60.6 2.6 199 840-1051 132-378 (1283)
453 COG3823 Glutamine cyclotransfe 90.8 6.1 0.00013 38.5 12.6 146 511-664 56-206 (262)
454 PHA02790 Kelch-like protein; P 90.8 9.4 0.0002 44.7 17.6 184 419-620 271-472 (480)
455 PRK13684 Ycf48-like protein; P 90.6 31 0.00067 38.1 31.5 152 497-660 172-329 (334)
456 PF10313 DUF2415: Uncharacteri 90.5 0.86 1.9E-05 31.8 5.0 31 409-439 1-34 (43)
457 PF10214 Rrn6: RNA polymerase 90.5 56 0.0012 40.8 27.1 173 840-1049 79-278 (765)
458 PF08728 CRT10: CRT10; InterP 90.1 17 0.00037 43.4 18.2 115 411-528 103-245 (717)
459 PF10313 DUF2415: Uncharacteri 90.0 0.91 2E-05 31.7 4.8 33 347-379 1-35 (43)
460 PF03022 MRJP: Major royal jel 89.7 23 0.0005 38.0 17.9 195 842-1037 2-255 (287)
461 PF07676 PD40: WD40-like Beta 89.5 1.4 3E-05 30.3 5.7 30 345-374 7-38 (39)
462 KOG3616 Selective LIM binding 89.4 15 0.00033 42.5 16.4 87 866-958 323-409 (1636)
463 COG5167 VID27 Protein involved 89.3 13 0.00027 41.4 15.1 149 461-618 474-632 (776)
464 PF11725 AvrE: Pathogenicity f 89.2 47 0.001 43.3 21.8 149 345-530 361-517 (1774)
465 COG1520 FOG: WD40-like repeat 89.1 44 0.00095 37.6 23.7 197 422-629 70-279 (370)
466 COG4590 ABC-type uncharacteriz 88.4 1.9 4E-05 46.7 8.2 153 840-1002 220-385 (733)
467 TIGR03606 non_repeat_PQQ dehyd 88.3 36 0.00077 38.9 18.7 111 881-994 29-165 (454)
468 PF14761 HPS3_N: Hermansky-Pud 88.1 21 0.00046 35.5 14.5 112 843-957 20-166 (215)
469 KOG1900 Nuclear pore complex, 87.7 5 0.00011 50.0 12.2 138 367-530 97-273 (1311)
470 COG5167 VID27 Protein involved 87.7 9.3 0.0002 42.4 12.8 158 887-1055 472-642 (776)
471 PF02333 Phytase: Phytase; In 87.7 50 0.0011 36.5 21.9 188 469-664 70-292 (381)
472 PRK14131 N-acetylneuraminic ac 87.4 56 0.0012 36.8 20.9 68 419-489 38-118 (376)
473 PF13449 Phytase-like: Esteras 87.3 50 0.0011 36.3 22.9 111 842-954 86-249 (326)
474 COG5290 IkappaB kinase complex 86.9 22 0.00047 41.9 15.7 128 978-1118 250-383 (1243)
475 PF12657 TFIIIC_delta: Transcr 86.7 3.6 7.8E-05 40.3 8.8 31 409-439 86-122 (173)
476 PF14781 BBS2_N: Ciliary BBSom 86.4 26 0.00056 31.9 12.9 122 780-921 6-134 (136)
477 TIGR03548 mutarot_permut cycli 86.4 57 0.0012 35.9 22.4 69 512-580 125-199 (323)
478 PF07569 Hira: TUP1-like enhan 86.3 2.7 5.9E-05 42.8 7.9 76 932-1007 18-99 (219)
479 KOG2247 WD40 repeat-containing 86.3 0.22 4.7E-06 54.3 -0.0 140 319-483 41-186 (615)
480 KOG1916 Nuclear protein, conta 86.2 1 2.2E-05 53.0 5.1 163 346-534 132-328 (1283)
481 PF11725 AvrE: Pathogenicity f 86.1 54 0.0012 42.7 19.8 134 900-1043 619-768 (1774)
482 PRK13613 lipoprotein LpqB; Pro 85.9 72 0.0016 38.1 20.3 193 842-1041 364-576 (599)
483 PF08728 CRT10: CRT10; InterP 85.6 28 0.00062 41.6 16.5 110 842-953 102-245 (717)
484 COG3292 Predicted periplasmic 85.6 62 0.0013 37.1 17.9 276 344-658 162-443 (671)
485 KOG1983 Tomosyn and related SN 85.5 33 0.00071 43.8 18.2 231 841-1105 36-268 (993)
486 KOG2063 Vacuolar assembly/sort 84.9 45 0.00098 41.1 18.1 248 779-1055 21-276 (877)
487 smart00036 CNH Domain found in 83.9 69 0.0015 34.7 23.6 239 780-1055 9-278 (302)
488 PF07569 Hira: TUP1-like enhan 83.7 6.3 0.00014 40.2 9.1 62 893-955 21-96 (219)
489 PF02333 Phytase: Phytase; In 82.8 71 0.0015 35.4 17.0 196 893-1103 67-292 (381)
490 COG4590 ABC-type uncharacteriz 82.4 4 8.7E-05 44.3 7.2 170 873-1051 212-390 (733)
491 PF12657 TFIIIC_delta: Transcr 82.2 5.9 0.00013 38.8 8.0 31 925-955 86-122 (173)
492 TIGR02276 beta_rpt_yvtn 40-res 82.1 6.8 0.00015 27.3 6.3 39 850-889 1-41 (42)
493 PF07250 Glyoxal_oxid_N: Glyox 82.0 21 0.00046 36.8 12.1 145 524-672 49-206 (243)
494 KOG4460 Nuclear pore complex, 82.0 97 0.0021 35.1 19.7 72 883-955 105-199 (741)
495 PF12768 Rax2: Cortical protei 81.2 33 0.00071 36.4 13.5 103 477-581 16-129 (281)
496 PF11635 Med16: Mediator compl 80.7 1.6E+02 0.0034 36.8 21.3 79 1017-1096 259-345 (753)
497 PF07250 Glyoxal_oxid_N: Glyox 80.4 15 0.00032 37.8 10.3 131 820-957 50-200 (243)
498 KOG1983 Tomosyn and related SN 80.1 35 0.00076 43.5 15.6 72 540-622 197-268 (993)
499 KOG1898 Splicing factor 3b, su 79.6 1.7E+02 0.0037 36.4 39.8 109 980-1102 939-1049(1205)
500 PF10395 Utp8: Utp8 family; I 79.6 1.4E+02 0.0031 35.6 23.7 242 845-1102 32-306 (670)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-68 Score=526.91 Aligned_cols=489 Identities=20% Similarity=0.316 Sum_probs=408.8
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHH
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1135)
+-|++||++|+|..+||.+|+.+||.|||+.++ .+.|.++++.|+|+.++..+..+ ..+++...+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999998877 34556667789999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccc-cccchhhhcccCCchhHHHHHHHHHHhhcccCcccccc
Q 001157 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLD-NFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1135)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1135)
||++..|....|+.+||+.+.++ .++.+++++|+.-+..+ ++..++. ..-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~-~~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEE-NTTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhcccccccccc-chhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999999 56899999997765544 3334443 22223577899999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001157 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240 (1135)
Q Consensus 161 ~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f 240 (1135)
+|++||+.||+||++||+++|+|||+ .+-.||+.||.|++ .++ |. .+.+++.+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~---- 222 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQD---- 222 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhh----
Confidence 99999999999999999999999994 55589999999999 222 22 22233333
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeee
Q 001157 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 320 (1135)
Q Consensus 241 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1135)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccc
Q 001157 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1135)
Q Consensus 321 ~~~~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1135)
|.++|+-+.||++|+ +||+++.|.+..||++..-..+. +
T Consensus 223 ------------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l----------- 261 (519)
T KOG0293|consen 223 ------------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L----------- 261 (519)
T ss_pred ------------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------
Confidence 455899999999998 79999999999999986543321 1
Q ss_pred cccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 401 ~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
...+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 11267899999999999999999999999999999999998765322 24668899999999999 799999999999
Q ss_pred EEEcCCCeeEEEecCCC-CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 481 VWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~-~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.||+ +|..+...++-. ..|.++++++++ .++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.
T Consensus 338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~Dg--k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDL-DGNILGNWEGVRDPKVHDLAITYDG--KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EecC-CcchhhcccccccceeEEEEEcCCC--cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEE
Confidence 9995 566676776643 668999997755 899999999999999987655543 33356789999999999999887
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCc--eeEEEEe-CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRS--LGVVQFD-TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
-. +..+++||++..+.++.+.||..+. |.+ +|. .+..++++|++|+.|+||+..+++++.++.+|.. .|+
T Consensus 414 L~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vN 486 (519)
T KOG0293|consen 414 LQ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVN 486 (519)
T ss_pred cc----cCeeEEeecchhhHHHHhhcccccceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eee
Confidence 64 6679999999999999999997743 333 344 3458999999999999999999999999998865 899
Q ss_pred eEEEec-CCCEEEEEeCCCcEEEEECCC
Q 001157 637 RLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 637 ~~~~s~-~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
+++|+| +..++|++++||+||||....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999 667899999999999998653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-65 Score=493.94 Aligned_cols=488 Identities=19% Similarity=0.298 Sum_probs=409.6
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHH
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 80 (1135)
+.||||||.|||+|+.++++.++||+|++++|| ++.|.++|.+|+||.++..+.+| +++.+.+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 568999999999999999999999999999998 89999999999999999999988 67777899999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhccccccchhhhcccCCchhHHHHHHHHHHhhcccCcccc
Q 001157 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1135)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1135)
.|||+|.++...|+.+||+. +..++..+++||-+|+.+|..+.++..+.+.. .+.++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999986 66677789999999999999999999997543 23566677777777665544
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001157 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1135)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~-sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 237 (1135)
+||+||..||+||++||++|++.+ |+.. +||.+....+
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999998 5543 6665432222
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcce
Q 001157 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1135)
Q Consensus 238 ~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1135)
+ .+++.+|......|+|++.+
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~KS--------------------------------------- 214 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQKS--------------------------------------- 214 (508)
T ss_pred -h-------------------hHhhhchHHhhhheeccccc---------------------------------------
Confidence 1 12333444444444444433
Q ss_pred eeecCCCCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccc
Q 001157 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1135)
Q Consensus 318 ~~~~~~~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1135)
.+.|..|||||+ +|++|+.||.|.+||+.+|+......+.
T Consensus 215 ------------------------------h~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ--------- 254 (508)
T KOG0275|consen 215 ------------------------------HVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------- 254 (508)
T ss_pred ------------------------------chhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh---------
Confidence 466889999998 7999999999999999999876532221
Q ss_pred ccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 398 ~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
....+.-+..+|.|+.||.|...||+|+.||.|++|.+.+|.+++ .|. +|...|+|+.||.|+. .+++++.|
T Consensus 255 --Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 255 --AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred --hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhccccc
Confidence 011245688999999999999999999999999999999999988 444 8999999999999999 68999999
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCC-
Q 001157 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADG- 553 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~- 553 (1135)
.+++|.-+.+|++++.|+||...|+...|.++ |..+++++.||+|++|+..+.++..++... .-.|.++..-|.+
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 99999999999999999999999999999765 499999999999999999999998877654 4478888887755
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc--CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
..++.|. ..+++++.++. |+.+++|.... .+..-+.+.+|.|.++++.++|+.++.|.+.+|++..++..|..
T Consensus 406 eh~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 4566664 47789999976 78888886542 33566678999999999999999999999999999999987754
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-57 Score=486.46 Aligned_cols=573 Identities=15% Similarity=0.243 Sum_probs=482.2
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccc-cccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
++||++|+ +|++... ..|.+-|+.+++. +.. .-.+-...+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 6776653 4688889999876 221 1234566799999999999999999999
Q ss_pred eEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC
Q 001157 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~ 509 (1135)
.+++|++.+++.++ .... |.+||.-++|+|.+. .+++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 4555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
+...|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999986555 6788889999999999999999999985 7789999998877777776654
Q ss_pred CceeEEEEeCC-----CCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 589 ~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+.++.+-++ +.+++++|.+|.+++||..+++++......... .+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 5677777777 679999999999999999999887766544322 356666666566677778889999998877
Q ss_pred cchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccc
Q 001157 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
. ++.+.+-|..
T Consensus 313 l-~i~k~ivG~n-------------------------------------------------------------------- 323 (775)
T KOG0319|consen 313 L-TIVKQIVGYN-------------------------------------------------------------------- 323 (775)
T ss_pred c-EEehhhcCCc--------------------------------------------------------------------
Confidence 7 5555444433
Q ss_pred cccccccccCcccCCCceeEEEcCCCCCCCceEEEEE-eCCcceeeeecccceeEEEeecccCCCCCCcccccccceecc
Q 001157 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY-TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1135)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 822 (1135)
+.|..+.| .|+.+.++++++.+.+++|++.+...
T Consensus 324 -----------------------------dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---------------- 358 (775)
T KOG0319|consen 324 -----------------------------DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---------------- 358 (775)
T ss_pred -----------------------------hhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------
Confidence 33444544 35667799999999999997653211
Q ss_pred CCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCc----eEEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
..+.+ | ...|.++....+|-+|++|+ |.++++|.++.+ -++....+|.+.|.+++++..+..++
T Consensus 359 --------~ii~G--H-~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 359 --------QIIPG--H-TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred --------EEEeC--c-hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE
Confidence 12444 8 99999999888889999999 999999988443 34556778999999999998667899
Q ss_pred EEEeCCccEEEEEcccceE---------eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 898 AIGMEDSSVQIYNVRVDEV---------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 898 asg~~dg~v~iwd~~~~~~---------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
++++.|+++++|++...+. ......|...|.+++++|+.+++||||.|.+.+||+++... ....+.
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLs 502 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLS 502 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-----EEEEee
Confidence 9999999999999986221 11345799999999999999999999999999999999654 677888
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
||. .+|.++.|+|..+.+++ +.|++|+||.+ +..|++.+ .||...|..+.|-.+|+.|++++.||-|++|++
T Consensus 503 GH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 503 GHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred CCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 998 79999999999999999 68999999999 89998887 567999999999999999999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++++++.+. +|...|-++.-+| ...++++|+.||.|.+|.=.+.+
T Consensus 577 kt~eC~~tlD-----------~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 577 KTNECEMTLD-----------AHNDRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cchhhhhhhh-----------hccceeEEEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence 9999998886 8889999999999 66799999999999999876544
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-56 Score=476.46 Aligned_cols=568 Identities=16% Similarity=0.223 Sum_probs=469.5
Q ss_pred eeecCCCCCCceeecCC------cceeE-EEEec--CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccce
Q 001157 318 VSFAGVAHTPNVYSQDD------LTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 388 (1135)
Q Consensus 318 ~~~~~~~~~~~~~~~d~------~~~~~-~~~l~--h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~ 388 (1135)
++++++|+.++...-+. .++.. +.... ....+++++.+||++ +|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 88889998887765543 34444 33333 467899999999997 788899999999999999987764
Q ss_pred eecccccccccccccccc-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCc
Q 001157 389 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1135)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~ 467 (1135)
.+. |++||.-++|+|.|..||+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 233 99999999999999999999999999999999987666 88999999999999999876
Q ss_pred eEEEEEcCCCcEEEEEcCCCee-EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEE
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~-~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1135)
..|++|+.|+++++||+.+... +..+..|.+.|+++++.+++ ..+++++.|..|.+||+...+....++. ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 6789999999999999996554 78889999999999998864 8899999999999999966555555443 235666
Q ss_pred EEEcCC-----CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 001157 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+.+-++ |.+++++|. ++.+++||.++++++..........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 677666 668888874 88899999999988766554433346666666666777778889999999999999
Q ss_pred eeEEEeCCCCCCCcCeEEEe-cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCC
Q 001157 622 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1135)
....+-+.. ..|..+.|- |+.++||++++.+.+|+|+..+. .+. .+.
T Consensus 315 i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-~c~-ii~---------------------------- 362 (775)
T KOG0319|consen 315 IVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTS-YCQ-IIP---------------------------- 362 (775)
T ss_pred EehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCC-ceE-EEe----------------------------
Confidence 888887653 378888875 57789999999999999977654 111 222
Q ss_pred ccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEE
Q 001157 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
+|...|.++..
T Consensus 363 ---------------------------------------------------------------------GH~e~vlSL~~ 373 (775)
T KOG0319|consen 363 ---------------------------------------------------------------------GHTEAVLSLDV 373 (775)
T ss_pred ---------------------------------------------------------------------Cchhheeeeee
Confidence 26677888887
Q ss_pred eCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC-CEEEEEe
Q 001157 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS 859 (1135)
Q Consensus 781 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg-~~la~~s 859 (1135)
..+|..|++++.|.++++|.++.+. +..... -.+.+| ...|.+++++..+ .+++++|
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~-------------------~~~~~~--a~~~gH-~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNC-------------------SKSLCV--AQANGH-TNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCc-------------------chhhhh--hhhccc-ccccceeeecccCccEEEEec
Confidence 7788899999999999999873211 111111 122348 9999999998765 4788888
Q ss_pred -CCeEEEEeCCCceE-----E----EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 860 -GGKVSLFNMMTFKV-----M----TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 860 -dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
|+++++|++...+. . .+...|...|+|++++| +.+++|||+.|.+.+||+++......+|.||...|.+
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 99999999976221 1 12346999999999999 8899999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcc
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECS 1007 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~ 1007 (1135)
+.|+|..+.++|+|.|++|+||.++++. +++.+.||. ..|..+.|-.+|+.|++ +.||-+++|++ +..|+
T Consensus 511 V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~---~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT---SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred EEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc---ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 9999999999999999999999999977 788899998 79999999999999999 68999999999 88888
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
..+ +.|...|++++.++++.++++|+.||.|.+|.=.|.+
T Consensus 583 ~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 583 MTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 876 5679999999999999999999999999999876543
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4e-51 Score=420.55 Aligned_cols=571 Identities=14% Similarity=0.193 Sum_probs=443.3
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
-+.-.|.|+.++.+. .+.|.+-++++..... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 345567777788765 4578888887765433 3788999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc--CCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccC
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~ 508 (1135)
.|||||....+.+ ...+++...++|..++|+.|+++ |+..+ .++..+++-..+|..+..+.||...|+++.|-|.
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 9999998774433 23367778899999999999994 55444 3334444444488889999999999999999888
Q ss_pred CCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee---c
Q 001157 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---G 585 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~ 585 (1135)
.. -.+++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. |+++++||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence 76 68999999999999975555555567778889999999999999999985 7889999999999999998 6
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC-CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.. .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|+|.+++....
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 665 8999999999999999999999999999999999998765431 112234444 667889999999999998777
Q ss_pred chheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccc
Q 001157 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
...+.+.+
T Consensus 311 -~~~~~i~G----------------------------------------------------------------------- 318 (603)
T KOG0318|consen 311 -SVLKVISG----------------------------------------------------------------------- 318 (603)
T ss_pred -Chhheecc-----------------------------------------------------------------------
Confidence 34444433
Q ss_pred ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCC
Q 001157 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 824 (1135)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
|...|++++.++++++|++++.||.|.-|+....
T Consensus 319 --------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g-------------------- 352 (603)
T KOG0318|consen 319 --------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG-------------------- 352 (603)
T ss_pred --------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCCc--------------------
Confidence 6677999999999999999999999999976432
Q ss_pred CCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE--eeCCCCCeeEEEEeCCCCcEEEEEeC
Q 001157 825 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME 902 (1135)
Q Consensus 825 ~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~ 902 (1135)
.. ..+.+..| ...|.+++.+..+.++.++-|.++++.++..+..... ++ -.....+++..+ ++.+++..+.
T Consensus 353 --~~--~~~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 353 --TS--DRLAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred --cc--cccccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEec
Confidence 21 12333448 9999999998888877777799999999865433222 12 122334888888 6666666666
Q ss_pred CccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
++-+.+=|... +.... -.-...+++++|+++.++.|+.|+.|+||.+...+......+.. |. .+++.++|
T Consensus 426 ~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vay 495 (603)
T KOG0318|consen 426 SDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAY 495 (603)
T ss_pred CcEEEEecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEEEE
Confidence 65444433322 22222 22346789999999999999999999999999866433322222 22 68999999
Q ss_pred CCCCcEEEEEE-CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCccc
Q 001157 983 HNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061 (1135)
Q Consensus 983 spdg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~ 1061 (1135)
|||+.+|++++ .+.+.+||...+... ...-..|...|.+++|||+.++||+|+.|.+|.||+++.-...-.+.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~-~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----- 569 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVK-TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----- 569 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCcee-cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----
Confidence 99999999974 789999999544442 22223469999999999999999999999999999998755443332
Q ss_pred CccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1062 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
..|...|..+.|. ++..+++++.|..|++|++.
T Consensus 570 -----nAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 570 -----NAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----cccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 3677779999998 57899999999999999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-50 Score=429.60 Aligned_cols=551 Identities=18% Similarity=0.275 Sum_probs=438.1
Q ss_pred EecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 342 ~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
.+++...|++++.||+|. +|++-...|...+-++.....++.. ..+.+|.|+.|||||+
T Consensus 51 ~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f--------------------~fk~~v~~i~fSPng~ 109 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRF--------------------NFKRGVGAIKFSPNGK 109 (893)
T ss_pred EeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEE--------------------eecCccceEEECCCCc
Confidence 345788999999999997 6666678888888888776665532 2456899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCc-----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee--EEEec
Q 001157 422 MLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK--QYTFE 494 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~l~ 494 (1135)
++|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+++..+. .+.+.
T Consensus 110 ~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~ 186 (893)
T KOG0291|consen 110 FFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALN 186 (893)
T ss_pred EEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEecc
Confidence 9999854 5699998765432 223346678999999999999999 999999999999999987655 56788
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-----------------------CCc-----------eEEecCC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----------------------LGS-----------RVDYDAP 540 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-----------------------~~~-----------~~~~~~~ 540 (1135)
+|...|.+.-|..+. ..+++.+.||.+.+|.... ++. ..-+...
T Consensus 187 gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 187 GHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred CCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 999999998886654 7899999999999997651 111 0011223
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCC
Q 001157 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN 619 (1135)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 619 (1135)
...+++.+|++..+.|+++.. .|...++.+....+++.+.-... .|..++|+..|.+++.|+ .-|.+-||+..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 368999999999999999875 67789999999999999987665 899999999999999987 458999999998
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
..-+.+.++| ...+.+++++|||+++|+|+.||.|+|||..++ -++.++
T Consensus 340 EsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTF---------------------------- 388 (893)
T KOG0291|consen 340 ESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTF---------------------------- 388 (893)
T ss_pred cceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEe----------------------------
Confidence 7766666655 558999999999999999999999999998766 121111
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
.+ | ...|+.+.|+..|+.+++.+
T Consensus 389 ------------------------------------------------------te--H-ts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 389 ------------------------------------------------------TE--H-TSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred ------------------------------------------------------cc--C-CCceEEEEEEecCCEEEEee
Confidence 11 6 88899999999999999999
Q ss_pred -CCeEEEEeCCCceEEEEeeCCCC-CeeEEEEeCCCCcEEEEEeCCc-cEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 860 -GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 860 -dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
||+|+.||+..++..++|..+.. ...|++..| .|.++..|+.|. .|++|++++|+++..+.||.++|.+++|+|++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 99999999999999999986553 468899999 889998898885 79999999999999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCC--
Q 001157 937 NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSP-- 1012 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~-- 1012 (1135)
..|||++.|.+|++||+-....... .+.. . ..++.++|+|||+.|++ +-||.|.+||+ .......+..
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vE-tl~i---~----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgrk 562 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVE-TLEI---R----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRK 562 (893)
T ss_pred CeEEeccccceEEEEEeeccCceee-eEee---c----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchh
Confidence 9999999999999999976422111 1111 1 46899999999999999 57999999998 3333322111
Q ss_pred ----C-----------CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccC---------------
Q 001157 1013 ----K-----------DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP--------------- 1062 (1135)
Q Consensus 1013 ----~-----------~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~--------------- 1062 (1135)
+ .......++++||+||.++++|++...|++|++.++..+.+++......
T Consensus 563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtE 642 (893)
T KOG0291|consen 563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTE 642 (893)
T ss_pred hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccc
Confidence 1 1235789999999999999999999999999999988776554322111
Q ss_pred c---c-----------------------ccCCC----CCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1063 T---Y-----------------------AVSSN----TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1063 ~---~-----------------------~~~~~----~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. . -.... -..++.+.|+| .++-++.++..|- .+|.+.+
T Consensus 643 fG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl-~IYsld~ 710 (893)
T KOG0291|consen 643 FGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGL-LIYSLDT 710 (893)
T ss_pred cCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccce-EEEecCC
Confidence 0 0 00001 35688999999 7788888887764 5677644
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-50 Score=413.57 Aligned_cols=552 Identities=16% Similarity=0.219 Sum_probs=432.5
Q ss_pred CCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 324 ~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
|+.+.+-..+.... +....+|...++-..|||.|- ++|+|...|+|+|||....+.+...+
T Consensus 38 Gksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne----------------- 98 (603)
T KOG0318|consen 38 GKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE----------------- 98 (603)
T ss_pred CCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------
Confidence 44444444444333 333445899999999999996 89999999999999998755443323
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+..-.++|..++|++|+++|++.+. ++..+++-.++|..+. ++.||...|++++|-|.... +++||++|++|.+
T Consensus 99 f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~f 174 (603)
T KOG0318|consen 99 FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAF 174 (603)
T ss_pred eeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEE
Confidence 3346789999999999999988754 3344444445665555 78899999999999987665 8999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec---CCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|+=.--+...+++.|...|+++.|+|++ .++++++.||+|.+||=.+++.+..+. .|.+.|.+++|+||+..+++
T Consensus 175 feGPPFKFk~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T 252 (603)
T KOG0318|consen 175 FEGPPFKFKSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLT 252 (603)
T ss_pred eeCCCeeeeecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEE
Confidence 9966667777888999999999999865 899999999999999999999998887 78999999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccC---CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
++. |.++++||..+.++++++..... ..+.|+ |. +..|++.+.+|+|.+++......+..+.+|.. .|
T Consensus 253 ~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~I 323 (603)
T KOG0318|consen 253 VSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SI 323 (603)
T ss_pred ecC----CceEEEEEeeccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--ce
Confidence 985 77899999999999998875432 234443 54 67899999999999999999999999987754 89
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
++++.++|+.+|++|+.||.|.-|+..++......-+.|...+..
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~----------------------------------- 368 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG----------------------------------- 368 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE-----------------------------------
Confidence 999999999999999999999999998884332222445443321
Q ss_pred CCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccce
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 795 (1135)
+.....+.++.++.|.++++.++.......... .. -..+..+++..+++..++..+.++.
T Consensus 369 --------------~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~-----lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 369 --------------MAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VK-----LGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred --------------EeecCCCcEEEEecCCeEEEEecccCcccccce-ee-----cCCCceeEEEcCCCCEEEEEecCcE
Confidence 112234677888889999998876543322211 11 1234458889999877777666655
Q ss_pred eEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE
Q 001157 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM 874 (1135)
Q Consensus 796 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~ 874 (1135)
+.+-+.. .+.... - .....+++++|++..+|+|+ |+.|+||.+....+.
T Consensus 429 v~l~~~~------------------------~~~~~~-----~-~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ 478 (603)
T KOG0318|consen 429 VLLQDQT------------------------KVSSIP-----I-GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK 478 (603)
T ss_pred EEEecCC------------------------cceeec-----c-ccccceEEEcCCCCEEEEecccceEEEEEecCCccc
Confidence 4442221 011111 1 55678999999999999999 999999999875543
Q ss_pred --EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecCccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 875 --TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 875 --~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
..+..|.++|++++||| |+.+||+|+..+.|.+||+.+.+.... ..-|..+|.+|+|+|+.+++|||+-|.+|.||
T Consensus 479 ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 479 EEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred ceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 34566999999999999 999999999999999999999887443 44599999999999999999999999999999
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
+++..... +.....|. ..|..+.|-.+...+-++.|..|++|++
T Consensus 558 sv~kP~~~----i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 558 SVKKPAKH----IIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EccChhhh----eEeccccc---cCceeEEEecCceEEeccCcceeEEecc
Confidence 99975532 33344454 5699999998888777799999999986
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-49 Score=423.50 Aligned_cols=587 Identities=13% Similarity=0.213 Sum_probs=450.3
Q ss_pred CCcceeeecCCCCCCceeecCC-------cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 001157 313 GQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (1135)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~ 385 (1135)
..|.+++.||+|..+.+..... .....++.+.-+.+|.|+.|||||+ ++|+|. .+.+.||.......-.-.
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccC
Confidence 4688999999997766554432 2344556666688999999999998 666654 568999997643321111
Q ss_pred cceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCC
Q 001157 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465 (1135)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~ 465 (1135)
+| .....+.+|-..|.++.|+.|.++|++|+.|-+++||+++..+.+. ...+.+|.++|-++-|..+.
T Consensus 134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANS 201 (893)
T ss_pred cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCc
Confidence 11 1223467899999999999999999999999999999999877643 34788999999999999998
Q ss_pred CceEEEEEcCCCcEEEEEcCC-----------------------Cee-----E------EEecCCCCCeEEEEeccCCCc
Q 001157 466 KQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----Q------YTFEGHEAPVYSVCPHHKESI 511 (1135)
Q Consensus 466 ~~~~l~s~~~d~~i~iwd~~~-----------------------~~~-----~------~~l~~h~~~v~~l~~~~~~~~ 511 (1135)
. -++|.+.||.+.+|.... ++. . .-+......|++.+|++..
T Consensus 202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-- 277 (893)
T KOG0291|consen 202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-- 277 (893)
T ss_pred c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence 8 799999999999998651 111 0 1112234789999999876
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..|++|-..|...+|++.....+..+......|..++|+..|.+++.++. +-|++.+|+.++...+...++|.. .+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i 353 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI 353 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence 79999999999999999999999999988899999999999999999874 578999999999999999999988 89
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
.+++++|||+++++|++||.|+|||..++-++.++..|. ..|+.+.|+..|+.+++.+-||+|+.||+... +.++++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt--s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT--SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC--CceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 999999999999999999999999999999999998774 48999999999999999999999999999877 555555
Q ss_pred cCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccc
Q 001157 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~ 751 (1135)
..+
T Consensus 431 t~P----------------------------------------------------------------------------- 433 (893)
T KOG0291|consen 431 TSP----------------------------------------------------------------------------- 433 (893)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 332
Q ss_pred cCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc-eeEEEeecccCCCCCCcccccccceeccCCCCCccc
Q 001157 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 830 (1135)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1135)
...+..|++..|.|..+++|+.|. .|. +|+.++|+++.
T Consensus 434 -------------------~p~QfscvavD~sGelV~AG~~d~F~If----------------------vWS~qTGqllD 472 (893)
T KOG0291|consen 434 -------------------EPIQFSCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQLLD 472 (893)
T ss_pred -------------------CceeeeEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCeeee
Confidence 123457899999999888888773 344 45567777665
Q ss_pred cCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceE-EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 831 NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 831 ~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
. +.| | +++|.+++|+|+|..||++| |.+|++||+-.... ..++. +...++.++|+| +|+-||+++-||.|.+
T Consensus 473 i-LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf 546 (893)
T KOG0291|consen 473 I-LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITF 546 (893)
T ss_pred h-hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEE
Confidence 4 555 8 99999999999999999999 99999999876533 34444 778999999999 9999999999999999
Q ss_pred EEcccceEeEeecC--------------------ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 909 YNVRVDEVKTKLKG--------------------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 909 wd~~~~~~~~~l~~--------------------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
||...+..+..+.+ .....+.+++|+||..|++||..+.|++|++.++-.++...+....
T Consensus 547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 99987665543322 2345889999999999999999999999999997765544333211
Q ss_pred CCCCCCCCceeEEECCCCcEEEEEE-----CCcEEE-------EeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLVVH-----ESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~~-----d~~i~v-------wd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
.-.........=.+++-|..-++-. ++.|.+ +|+..+ .+.+ .-.|.++.|||.|+-+|+++
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeeeec
Confidence 1100001112223344444433311 122211 111111 0110 23588999999999999998
Q ss_pred cCCcEEEEecCCCceeeccC
Q 001157 1037 CDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1037 ~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
..| |.||.+++.-...-+.
T Consensus 700 TEG-l~IYsld~~~~FDPf~ 718 (893)
T KOG0291|consen 700 TEG-LLIYSLDTTILFDPFD 718 (893)
T ss_pred ccc-eEEEecCCceEEcccc
Confidence 876 7889998765554443
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-49 Score=421.47 Aligned_cols=574 Identities=15% Similarity=0.242 Sum_probs=443.7
Q ss_pred cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 001157 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1135)
Q Consensus 356 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iw 435 (1135)
..|++ ++ ++.-..|.+||+++|+.... + ........|+|+.-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr~-va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 35774 43 33356899999999954432 0 012334689999999999999999999999999
Q ss_pred EcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEE
Q 001157 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 436 d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~ 515 (1135)
+..++.... .+.||..+|+++.|...|. .|+|||.|+.|.+||+-...-+..++||...|+.+-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875444 7899999999999999999 89999999999999999888899999999999999887643 8999
Q ss_pred EEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-------c-----eeEEe
Q 001157 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-------A-----IKRTY 583 (1135)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~ 583 (1135)
+.+.|+.|++||+++..+..+...|...++++++.+ +.+++++. ++.+.+|++... . ...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 667999998210 0 11112
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE--------e--CC----------------------CC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--------D--AD----------------------GG 631 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~--~~----------------------~~ 631 (1135)
.....+..-.+...++++++++-+.|..+.+|.+.+.+.+... + .. ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1111123334667778889999999999999998753311000 0 00 00
Q ss_pred CCCcCeEEEecCCC---EEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCC
Q 001157 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1135)
...+.++.|.|.+. .|+. -.++++..|.++.. ....
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~~--------------------------------------- 358 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENS-GKTS--------------------------------------- 358 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccC-CCCC---------------------------------------
Confidence 12345566655432 2222 34455555554331 0000
Q ss_pred CCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceee
Q 001157 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1135)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 788 (1135)
........+.+ .+|...|.++++|.+...++
T Consensus 359 -----------------------------------------------p~~~~~~~i~~--~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 359 -----------------------------------------------PEADRTSNIEI--GGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred -----------------------------------------------ccccccceeee--ccchhheeEEEeecCceeee
Confidence 00011112222 34889999999999987555
Q ss_pred eecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEe
Q 001157 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1135)
Q Consensus 789 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd 867 (1135)
++ .++.+++|+.. +.+.++..- .+.+.+..|-|.++++++|. .|.+.+||
T Consensus 390 Sg-a~~SikiWn~~----------------------t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 390 SG-AGESIKIWNRD----------------------TLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ec-CCCcEEEEEcc----------------------CcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 44 45678888654 333333211 44688899999999999999 89999999
Q ss_pred CCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-----ceEeEeec-------CccCceEEEEEcCC
Q 001157 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSPT 935 (1135)
Q Consensus 868 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~i~~l~~s~d 935 (1135)
+.+..++.+.++|.+.|.+++.+| |+..+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 899999999999999999652 21111111 13466999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCC
Q 001157 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1013 (1135)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~ 1013 (1135)
|++||.+--|.+|+||-+++.+ +.-.+.||. .+|.++..|||++.+++ +.|+.|++|-+ =+.|.+.+.
T Consensus 520 gk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-- 589 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-- 589 (888)
T ss_pred CcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--
Confidence 9999999999999999999866 667788998 79999999999999999 57999999999 788888774
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC
Q 001157 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1014 ~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg 1093 (1135)
+|...|.++.|-|+..++++++.|+.|+-||.+..+.+..+. +|...+.+++.+| +|.++++++.|.
T Consensus 590 -AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-----------~H~~ev~cLav~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 590 -AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-----------GHHSEVWCLAVSP-NGSFVVSSSHDK 656 (888)
T ss_pred -cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-----------cchheeeeeEEcC-CCCeEEeccCCc
Confidence 568999999999999999999999999999999998887775 7889999999999 889999999999
Q ss_pred cEEEEecCCCc
Q 001157 1094 AVHVVEPSDAE 1104 (1135)
Q Consensus 1094 ~i~lW~~~~~~ 1104 (1135)
+|++|......
T Consensus 657 sIRlwE~tde~ 667 (888)
T KOG0306|consen 657 SIRLWERTDEI 667 (888)
T ss_pred eeEeeeccCcc
Confidence 99999987643
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-49 Score=419.61 Aligned_cols=499 Identities=14% Similarity=0.283 Sum_probs=404.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
...+|+|+.-+||.- +||+|-.||.|+||+..++..+.+ +.||+..|+++.|...|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 345899999999996 899999999999999998765543 789999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.|+.|.+||+-...... .+.||+..|+.+-|..+.+ ++++.+.|+.|++||+++..+..+.-.|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 7889999999999998677 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCce------E------E-ecCCC------------------------------
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V------D-YDAPG------------------------------ 541 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~------~-~~~~~------------------------------ 541 (1135)
+.+ +.+++++.|+.+++|++...... . . .....
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 965 68999999999999988210000 0 0 00001
Q ss_pred ----------------------------------------------CeEEEEEEcCCCCE---EEEEeeCCCCCceEEEE
Q 001157 542 ----------------------------------------------NWCTMMAYSADGTR---LFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 542 ----------------------------------------------~~v~~~~~s~~~~~---l~~~~~~~~~~~~i~~w 572 (1135)
..+.++.+.|.++. |+.- .++.+.+|
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l-----~nNtv~~y 349 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL-----ANNTVEWY 349 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe-----ecCceEEE
Confidence 12334444443321 2221 13445555
Q ss_pred eCCC-Cce--------eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 573 NESE-GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 573 d~~~-~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
.+.. +.. ...+.+|.. .|++++++.+...+++| ..+.+++|+..+.+++.++... .+.+..|-|.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpg 423 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPG 423 (888)
T ss_pred EeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCC
Confidence 5543 111 134556666 89999999887666665 4678999999999999999754 6788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccC
Q 001157 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
++++++|...|.+.+||+.+. .+..+++.
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~-~l~Eti~A-------------------------------------------------- 452 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASA-SLVETIRA-------------------------------------------------- 452 (888)
T ss_pred CceEEEeccCCceEEEEeehh-hhhhhhhc--------------------------------------------------
Confidence 999999999999999999876 44433322
Q ss_pred ccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecc
Q 001157 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 803 (1135)
|++.|.+++.+||++.+++++.|.+|++|++..
T Consensus 453 -----------------------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 453 -----------------------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred -----------------------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 677889999999999999999999999999864
Q ss_pred cCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCC
Q 001157 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP 882 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~ 882 (1135)
... ..|... ++..+..... +.- +..|.|+.+||||++||++- |.+++||-+++.+....+.||.-
T Consensus 486 ~~~-~~gt~~-----k~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 486 VVS-VPGTQK-----KVLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred Eec-cCcccc-----eeeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 322 111110 0000111111 111 77899999999999999998 99999999999999999999999
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccce
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1135)
+|.|+.+|| |+++++||+.|.+|+||-++-|.|.+.+.+|.+.|.++.|-|....+.|+|.|+.|+-||-+..+
T Consensus 552 PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe----- 625 (888)
T KOG0306|consen 552 PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE----- 625 (888)
T ss_pred ceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccC
Q 001157 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL 1004 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~ 1004 (1135)
.++.+.+|. ..|++++.+|+|.++++ ++|.+|++|..+.
T Consensus 626 ~iq~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 626 EIQKLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hheeeccch---heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 677888888 79999999999999999 6899999999743
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-51 Score=401.57 Aligned_cols=367 Identities=20% Similarity=0.305 Sum_probs=304.5
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.||.++|.|++|+|+|+.||+|+.|.++|+||+.+..... +..+|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67999999999999999999999999999999999987665 8889999999999999999 899999999999999
Q ss_pred cCCCeeE-EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 484 ~~~~~~~-~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
.++|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5799999999999997742 235666777775
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+-
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 477789999888999999999998 99999998765 899999999999999999999999998877 799998876
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCccc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
|- .|-+|..|.+=+-....+. ...+.++...
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~----------------------------------------------- 329 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYE----------------------------------------------- 329 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHH-----------------------------------------------
Confidence 53 3334444432211111110 1111111100
Q ss_pred CccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeec
Q 001157 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1135)
...-..+..+++++.|.++.+|+-.
T Consensus 330 -------------------------------------------------------~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 330 -------------------------------------------------------AVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred -------------------------------------------------------HhhccCcceeEEecCCceEEEeccc
Confidence 0001123568999999999999643
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1135)
. +.+.+. .+.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|-
T Consensus 355 ~---------------------~kkpi~-rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 K---------------------SKKPIT-RMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred c---------------------cccchh-hhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 2 121222 1333 7 88999999999999999999 9999999999999999999999
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
..|..++|+. |.++|++|+.|.++++|++.+.++...|.||.+.|.++.|+|||+.+++|+.|..+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-49 Score=393.31 Aligned_cols=327 Identities=20% Similarity=0.365 Sum_probs=292.2
Q ss_pred Eec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 342 ~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
.+. |.+.|.|++|||+|+ .||+|+.|.++++||+.+...+.+ .++|...|.|++|||||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDG 169 (480)
T ss_pred ccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCc
Confidence 344 889999999999998 689999999999999998876654 78999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec-----CCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||.|+|||+..++++..+.+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEecc
Confidence 9999999999999999999987654 6889999999999975 455 799999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEc-----------CCCC----------
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT---------- 554 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~---------- 554 (1135)
|..+|+|++|-.. .++++||.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 246 HTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred CccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 9999999999543 599999999999999999988899999999999999887 2233
Q ss_pred ---------------EEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 555 ---------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 555 ---------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
.|++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|++|+.+
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCC
Confidence 4888874 78899999764 458888999988 89999999999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCC
Q 001157 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1135)
+|+.+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+. ++...+.+
T Consensus 398 tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpG------------------------- 449 (480)
T KOG0271|consen 398 TGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPG------------------------- 449 (480)
T ss_pred Ccchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCC-------------------------
Confidence 99999999877 558999999999999999999999999999876 33333322
Q ss_pred CCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEE
Q 001157 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
|.+.|.++
T Consensus 450 ------------------------------------------------------------------------h~DEVf~v 457 (480)
T KOG0271|consen 450 ------------------------------------------------------------------------HADEVFAV 457 (480)
T ss_pred ------------------------------------------------------------------------CCceEEEE
Confidence 67789999
Q ss_pred EEeCCcceeeeecccceeEEEe
Q 001157 779 IYTNSGLSLLALASNAVHKLWK 800 (1135)
Q Consensus 779 ~~s~~g~~l~~~~~dg~i~iw~ 800 (1135)
.++|||+.+++++.|..+++|.
T Consensus 458 DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCceeecCCCceEEEeec
Confidence 9999999999999999999993
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.3e-44 Score=380.60 Aligned_cols=620 Identities=13% Similarity=0.184 Sum_probs=423.5
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe--C
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~--~ 428 (1135)
.++-+|-.. ++|. -..-.|.+||.+..+.-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 445555544 3332 113478899987654332 3566888999999999999999984 6
Q ss_pred CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC--CCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
...+++|++.....+. +|..|+..|+|++|+|.++ ++++.+. |-.|.+||.+.......- .-...|.+++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7789999999877665 7889999999999999999 7887664 557778987755433322 245678889996
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEE------------cCCCCEEEEEeeCCCCCceEEE
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAY------------SADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~------------s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
. +|.|+++.+ ...|++|.++...... .+.+...-.-.+.+ ..+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 558888876 6789999988665322 11111111111111 0111122221 222332
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC----------------------
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD---------------------- 629 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 629 (1135)
+. +.+++..+-.-......|++.+ .+++++|+.+|.|++|+..+..-+.+++..
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 22 2222222221112245566666 578999999999999998776544444211
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee--eccCcccccCCCCCCCCcCCCCccccCCCCCccccccC
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 707 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1135)
.......++.|++....|.+...|..+++||+.+-.+.-+ .+-.|+.-+.
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW---------------------------- 373 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIW---------------------------- 373 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceee----------------------------
Confidence 1112234678999899999999999999999987533222 2222332221
Q ss_pred CCCCCCCCCCCCcccC-ccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcce
Q 001157 708 PTLERPDRGPPAVSIS-SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS 786 (1135)
Q Consensus 708 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 786 (1135)
..+. .+ -.........|.+.++.+.+|++|++|++.........++-.+ ......+.+..+...
T Consensus 374 -~Ve~---------~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----s~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 374 -DVEN---------LPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----SANLSKIPYEDSTQQ 438 (1080)
T ss_pred -eecc---------ccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----hhhhhcCccccCchh
Confidence 1111 00 1112334456677789999999999999986333222211100 001111111111111
Q ss_pred eeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEE
Q 001157 787 LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSL 865 (1135)
Q Consensus 787 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~i 865 (1135)
++--. ..-++|...... .. . ...+.++++||+|++||+|. .|+++|
T Consensus 439 ~~~d~-------------------------~~~~fdka~~s~----~d---~-r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 439 IMHDA-------------------------SAGIFDKALVST----CD---S-RFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred hhhhc-------------------------cCCcccccchhh----cC---c-ccceEEEEECCCcceecccCccCceEE
Confidence 11000 001111111111 11 2 66799999999999999999 799999
Q ss_pred EeCCCceEEEEeeCCCCCeeEEEEeCC--CCcEEEEEeCCccEEEEEccc-ceEeEeecCccCceEEEEEcCCC--CeEE
Q 001157 866 FNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTL--NALV 940 (1135)
Q Consensus 866 wd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~i~~l~~s~d~--~~l~ 940 (1135)
|++...+.+..+.+|..+|.|+.||.. ..++||+++.|.-|+|||+.. ..+++++.+|+..|+++.|.-.| ..++
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 999999999999999999999999952 357999999999999999874 46788999999999999998887 6799
Q ss_pred EEcCCCcEEEEeCCCcccccceeeecCCC-CCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCC
Q 001157 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAG-RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALP 1017 (1135)
Q Consensus 941 s~~~D~~i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~ 1017 (1135)
++|.|..|.+--.+..... ...+.+ +.....-+..++..|..+++++ +.|+.|+|||+ +++..+.|...++|.
T Consensus 566 scGADksimFr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred eccCchhhheehhccccCc----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence 9999998765443321110 011111 1111145678999999999999 78999999999 899999999999998
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEE
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~l 1097 (1135)
+....+...|.|-|||+.+.|+++.++|..+|+++.++. ||+..|+.+.|++ |.+.|++.+.||+|.|
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------GHsE~VTG~kF~n-DCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------GHSEAVTGVKFLN-DCKHLISVSGDGCIFV 709 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------Ccchheeeeeecc-cchhheeecCCceEEE
Confidence 999999999999999999999999999999999998875 9999999999999 8899999999999999
Q ss_pred EecCC
Q 001157 1098 VEPSD 1102 (1135)
Q Consensus 1098 W~~~~ 1102 (1135)
|.+..
T Consensus 710 W~lp~ 714 (1080)
T KOG1408|consen 710 WKLPL 714 (1080)
T ss_pred EECch
Confidence 99964
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-41 Score=370.58 Aligned_cols=553 Identities=15% Similarity=0.214 Sum_probs=363.4
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--------HHHHH--------------------------HHh--h
Q 001157 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQV--Q 46 (1135)
Q Consensus 3 ~~~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~l~--------------------------~~i--~ 46 (1135)
+..+++++++++||+..||+++.+.|.+|.++... ...+| .++ .
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 34678999999999999999999999999774331 11111 000 1
Q ss_pred cccHHHH------HHHhcCCCcc-------cccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHH
Q 001157 47 AGEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1135)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~-------~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1135)
.-.|... +.....|+.+ -..++. .++|+|+.|.||+|+.++....|..|+.+.--.+...+.+...
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1111111 1111122221 122333 5999999999999999999999999999876666677888888
Q ss_pred HHHHhhccccccchhhhcccCCc----hhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCCC
Q 001157 114 EITQLLTLDNFRQNEQLSKYGDT----KSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1135)
Q Consensus 114 ~l~~~l~~~~~~~~~~~~~~~~~----~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~ 189 (1135)
+|..+-...++.+++....+... .-+| ..++.|.+++.+... +-..-+..+|+|++..++......
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr-~s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSR-DSFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecH-HHHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 88888888888877766655441 2223 122333444433222 224568889999998887655332
Q ss_pred CCCCCcc-------ccccccccCCCCCCCCCCCCCCCCc-ccCCCCCCCC----CCCCCCCCCCCCCCCCcccccccccC
Q 001157 190 RPNPDIK-------TLFTDHSCNPTSNGARPPPPTNNPL-VGPIPKAGQF----PPIGAHGPFQPVVSPSPGAIAGWMSS 257 (1135)
Q Consensus 190 ~~~~~~~-------sl~~dh~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~h~~f~~~~~~~~~~~~g~~~~ 257 (1135)
+...... ..+..+.-. +.+ ...+ ++..++...+ +.+.+-.|= +.++-
T Consensus 248 r~~~~~~~~~g~~~~~i~g~~~~--------e~~-~~~~~l~~~~~e~~~~~~~~~~~e~~D~---------~~~~~--- 306 (707)
T KOG0263|consen 248 RRTTKPTAMVGSEQESIAGEAKR--------EIN-KQKVQLGLLLKEEEIEKKLPILLEVEDD---------PNEPD--- 306 (707)
T ss_pred cccccchhhcccccccccccchh--------hcc-cceeeecccccchhhhhcccccccCccc---------ccccc---
Confidence 2100000 011111111 111 0000 0111110000 000000000 00000
Q ss_pred CCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChh--hHHhhcccCCcceeeecCCCCCCceeecCCc
Q 001157 258 NSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSD--HLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335 (1135)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 335 (1135)
++. .........+... -...++.|.. +....+|-.+ ...+.... .+.+.-.....+.+
T Consensus 307 -~~~---~~~~~~~~~~~~~-----k~~d~~~ps~--d~iPlPp~~~~d~~~~~~~l---------~d~~kr~~l~~~~l 366 (707)
T KOG0263|consen 307 -NEK---LKKPKKKKLLSEE-----KKRDPNAPSR--DRIPLPPLKQVDKLAELEAL---------KDEQKRVKLGRNSL 366 (707)
T ss_pred -ccc---cccchhhhhhhhh-----hccccCCCcc--ccCCCCcccchhHHHHHHHH---------HHHHHHhhcCCCCC
Confidence 000 0000000000000 0000111110 1111111000 00000000 00111111224567
Q ss_pred ceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccc---cccee---------ecccccccccccc
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKV---------WDISAASMPLQNA 402 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~ 402 (1135)
+..++.++. ....++|+.||+|+. +||.|-.|..|++|.+...+.... ..+.- -++.+........
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 778888887 567899999999998 899999999999999985431110 00000 0111122222334
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||.++|..+.|+|+.++|++++.|+++|+|.+.+..++. ...||..+|+++.|+|-|- ++||+|.|++.++|
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLW 520 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLW 520 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeee
Confidence 488999999999999999999999999999999999987655 6779999999999999998 99999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
......+++.+.+|.+.|.|+.|+|+. .++++||.|.+||+||+.++..+..+.+|.++|.+++|||+|++|++|+.
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e- 597 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE- 597 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc-
Confidence 999999999999999999999999977 89999999999999999999999999999999999999999999999974
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
++.|.+||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 598 ---d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 ---DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 88899999999999999999955 9999999999999999999999999998653
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-41 Score=346.63 Aligned_cols=309 Identities=16% Similarity=0.278 Sum_probs=261.5
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc--cccccccceeeccccccccccc-ccccccCCCeeEE
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQN-ALLNDAAISVNRC 414 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~v 414 (1135)
...+.+.|+.+|.+++|+|-..-++++|+.|-+.++|++... .......++ ..+.. ..-......|+++
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDVTSL 241 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCcceE
Confidence 345566689999999999987668999999999999998741 111100000 00000 0001134579999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+|+.+|..||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|. +|++++.|+++.+||..+|...+.+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 999999999999999999999987643 33 6788999999999999999 99999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
-|..+-..+.|-.. ..+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|.+|++++. |++++||+.
T Consensus 316 ~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSM 388 (524)
T ss_pred eccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeec
Confidence 89988777777533 68999999999999999999999999999999999999999999999985 889999999
Q ss_pred CCCceeEEeecccCCceeEEEEeCCC---------CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 575 SEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
........+.+|.. .|..+.|+|+| ..+++++.|++|++||+..+.++.++..|. .+|++++|+|+|+
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEecCCCc
Confidence 99999999999988 89999999975 368889999999999999999999997664 4899999999999
Q ss_pred EEEEEeCCCcEEEEECCCcchheeec
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
++|+|+.||.|.+|+..++ ++++..
T Consensus 466 ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred EEEecCCCCeeEeccccch-heeEee
Confidence 9999999999999999888 555544
No 16
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=346.14 Aligned_cols=568 Identities=13% Similarity=0.146 Sum_probs=375.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+..+++|++||++|+ ++|+|- ..-.++||++.....+.. +..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 788884 556899999987665543 6789999999999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE---ecCCC
Q 001157 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEGHE 497 (1135)
Q Consensus 423 la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---l~~h~ 497 (1135)
+++.+. |-.|.+||++...... -+.-...|..++|+.||. |++|.+ ...|++|.++.++.... |.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998766 5578889887643332 122356799999999999 899888 78999999987763221 22221
Q ss_pred CCeEEEEeccCCCccEEEEE-------------EcCCeEEEEeCCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 498 APVYSVCPHHKESIQFIFST-------------AIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~-------------s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
.-...+.+. .+++.+ +..|.+.-+.-+ +.+-+ .........|++.+ .+++++++.
T Consensus 210 ~~lg~lr~n-----~f~avaCg~gicAestfait~qGhLvEFSsR--RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRFN-----EFLAVACGVGICAESTFAITAQGHLVEFSSR--RLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhccccccc-----hhhhhhhcCcccccceEEEecccceeeechh--hhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 111111110 111111 122222222111 11000 01112233455554 568888875
Q ss_pred CCCceEEEEeCCCCceeEEeecccC-----------------------CceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRK-----------------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-----------------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
++.|++++..+-..+.++.-.+. ...-++.|++....|.+.-.|..+++||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 88999999877554444321110 02335779998999999999999999999875
Q ss_pred eeeEEEe-CCCCCCCcCeEEEe------------cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCc
Q 001157 621 NMLTTVD-ADGGLPASPRLRFN------------KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 621 ~~~~~~~-~~~~~~~v~~~~~s------------~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
+.+.... ..-|...|+.+.-- |.+ -+++++.|++||+|++..+ .--+.+..+.....
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~c-tnn~vyrRNils~~-------- 426 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFC-TNNQVYRRNILSAN-------- 426 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccc-cccceeecccchhh--------
Confidence 4432211 00111123333222 223 4788999999999999764 11111111000000
Q ss_pred CCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcC
Q 001157 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1135)
.++.. ..|+..-+. .|...-++|-... .
T Consensus 427 ----l~ki~------------------------------------y~d~~~q~~-~d~~~~~fdka~~-----------s 454 (1080)
T KOG1408|consen 427 ----LSKIP------------------------------------YEDSTQQIM-HDASAGIFDKALV-----------S 454 (1080)
T ss_pred ----hhcCc------------------------------------cccCchhhh-hhccCCcccccch-----------h
Confidence 00000 000000000 0000111111100 0
Q ss_pred CCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
.-.....+.++++||+|++|++|...|.++||++...+. + ..-..| +..|.|+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~---~~~eAH-esEilcLe 508 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T---CFMEAH-ESEILCLE 508 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhh----------------------h---hheecc-cceeEEEe
Confidence 011345689999999999999999999999999864221 0 111238 99999999
Q ss_pred eec---CCCEEEEEe-CCeEEEEeCCC-ceEEEEeeCCCCCeeEEEEeCCC-CcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 848 LSK---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQD-NNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 848 ~s~---dg~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~-~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
||. ..++||+++ |.-|.|||+.. ..++.++.+|...|+++.|.-.+ +..+++++.|..|.+--.....-...+.
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 985 457999999 88899999975 56778899999999999998733 2667888999877664333211111222
Q ss_pred Cc-----cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECC
Q 001157 922 GH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHES 995 (1135)
Q Consensus 922 ~h-----~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 995 (1135)
.| ...++.++..|..+++++++.|..|+|||+++++..+ ..+...+|. +....+...|.|.||++ +.|+
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k--~FKgs~~~e---G~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK--SFKGSRDHE---GDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee--eecccccCC---CceEEEEECCCccEEEEeecCC
Confidence 12 3458999999999999999999999999999998543 333344443 67788999999999999 7899
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
++.++|. .++|+... .||+..|+.|.|++|.++|++.+.||+|+||.+..
T Consensus 664 tl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999 99999886 56799999999999999999999999999999874
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=5.6e-38 Score=341.23 Aligned_cols=584 Identities=14% Similarity=0.140 Sum_probs=434.1
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
..|..-|..++++.+-+.+..+||.+.-..+.- -..+...|.|++=..+ ++.+++. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence 555666667888888999999999987665542 2357778999887554 4444432 33
Q ss_pred EEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeE----EEecCCCCCeEEEEec
Q 001157 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~l~~h~~~v~~l~~~ 506 (1135)
|.+|. .++.++. .+.+|.+.|.-+.-- |. .++++..++.+.||+..++ ..+ .-++...+.|+++ +|
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LH 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ec
Confidence 55554 3433333 445677777766543 66 7899999999999998874 221 1122223337776 46
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 6655578899999999999999999999999999999999999999999999874 889999999999999999976
Q ss_pred cCCceeEEEEeCCCCEEEE-EecCCeEEEEECCCCeeeEEEe-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+ .|+.++|..||+.+++ |+..|.+-+||++..+.+..+. .| ...|....|.|....+++++.|+.+++|-.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 8999999999976655 5577999999999988887776 44 347889999999999999999999999976654
Q ss_pred chheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccc
Q 001157 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
.-..+.++
T Consensus 321 dg~pR~LR------------------------------------------------------------------------ 328 (910)
T KOG1539|consen 321 DGVPRLLR------------------------------------------------------------------------ 328 (910)
T ss_pred CCcchhee------------------------------------------------------------------------
Confidence 11111110
Q ss_pred ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEe-CCcceeeeecccceeEEEeecccCCCCCCcccccccceeccC
Q 001157 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1135)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
. ..+|..+..++.|- .+|..+++++.|++++.+++-...++..-.. ..+.
T Consensus 329 ---------------------~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~ 379 (910)
T KOG1539|consen 329 ---------------------S-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNK 379 (910)
T ss_pred ---------------------e-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccc
Confidence 0 02367777788877 7888999999999988887754332211100 0111
Q ss_pred CCCCccccCCCCCCCCCCCeeEEEeecC-----CCEEEEEe-CCeEEEEeCCCceE-EEEee-----CCCCCeeEEEEeC
Q 001157 824 PSGTLMTNDINESKPTEESAACIALSKN-----DSYVMSAS-GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFHP 891 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~v~~l~~s~d-----g~~la~~s-dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~l~~sp 891 (1135)
..++.........-- -.+|..+++... .+.++..- +..++.|++..... ...+. .-...+++++.++
T Consensus 380 ~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 111111000000000 345666666542 22333333 67799999987554 33333 1236799999999
Q ss_pred CCCcEEEEEeCCccEEEEEcccceEeEee---cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 892 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
.|++.+.|...|.|-+|++++|-....+ ..|.++|++++...-++.++|++.+|-+++||..+..... ...
T Consensus 459 -CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~ 532 (910)
T KOG1539|consen 459 -CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR 532 (910)
T ss_pred -cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec
Confidence 9999999999999999999999888888 6899999999998888999999999999999999865222 211
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
- ...+.++..+.....+++ .+|-.|.++|. +-+.++.+ .+|++.|++++|||||++|++++.|++|++||+
T Consensus 533 l----~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 L----GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred c----CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 1 145778888888888887 67889999999 55566665 567999999999999999999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEecC
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~~ 1101 (1135)
.++.++..+. -+...+.+.|+| ++++||++..| ..|++|-=.
T Consensus 606 pt~~lID~~~------------vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 606 PTGTLIDGLL------------VDSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred cCcceeeeEe------------cCCcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 9999998774 236788999999 88999999999 789999643
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-41 Score=342.62 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=264.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC--CCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~ 422 (1135)
...+|..+.||+|++ +||||+-+|.++||+..+...+.. +.||.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 356899999999998 899999999999999998876653 7899999999999997 679
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999976665 7889999999999999999 9999999999999999999999889999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|++++ .+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|-.|++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9998865 89999999999999999999999999999999999999999999999974 88999999999999999
Q ss_pred eecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
+.+|.+ -|+.+.|+| .|.+|++++.|+++++|...+..+++.+.+|.+ .|.++++++|+..+++++.|+++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999988 899999998 778899999999999999999999999998865 799999999999999999999999995
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.3e-38 Score=335.26 Aligned_cols=637 Identities=14% Similarity=0.185 Sum_probs=426.9
Q ss_pred CceeecCCcceeEEEEec-CCCCeeEEEeecCCC--eEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~-h~~~V~~~~fspdg~--~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
.++..+|........++. |..+|+|+.|-|+.+ ..+++|+.||.|++|.++....+... .
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~ 96 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------T 96 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------e
Confidence 344455555556666776 999999999998875 24789999999999999844333211 1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEee--cCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+.+|.. .|++++.......+.+.|+++.+||.+..+. .....+. .-..-..|+++.++.+.++++.|+.+..|.+
T Consensus 97 ~~g~~~--~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 97 IQGHCK--ECVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred ecCcce--eEEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE
Confidence 445554 4455554444444447899999999955441 1111111 1122236777778666657788888888888
Q ss_pred EEcCCC--eeEEEecCCCCCeEEEEeccCCC-ccEEEEEEcCCeEEEEeCCCCC------------------------ce
Q 001157 482 WDVVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------SR 534 (1135)
Q Consensus 482 wd~~~~--~~~~~l~~h~~~v~~l~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~------------------------~~ 534 (1135)
+.-..+ +.+..+.||.+.|.+++|...+. .-+|+|+|.|..||+|.+.-.. ..
T Consensus 174 ~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 174 YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 875533 45678999999999999975543 4688999999999999764322 00
Q ss_pred -------EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC--ceeEEee----cccCCceeEEEEeCCCC
Q 001157 535 -------VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 535 -------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~s~~~~ 601 (1135)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. -.+.... ++........-|+|+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 023478999999999999988888875 677999987643 3333332 22233577888999999
Q ss_pred EEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCC
Q 001157 602 RFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1135)
.+++-+..|..++|.... ..........+|...|..++|+|.|.+|++.+.|.+-|+|-.-..+.....+..
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR------- 402 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR------- 402 (764)
T ss_pred EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc-------
Confidence 999999999999998332 223333333456778999999999999999999999999865411111111100
Q ss_pred CCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCc
Q 001157 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1135)
T Consensus 403 -------------------------------------------------------------------------------- 402 (764)
T KOG1063|consen 403 -------------------------------------------------------------------------------- 402 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCC
Q 001157 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 840 (1135)
.+.|...++|++|-+....++++.....+|+|+.+..-. .... .+-....+.. ..++. .
T Consensus 403 -------PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv-------~~l~-~i~g~~~~~~--~~~p~----g 461 (764)
T KOG1063|consen 403 -------PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV-------KSLM-AICGKCFKGS--DELPD----G 461 (764)
T ss_pred -------cccccccceeeehccCCceeeecccceeeeeecCcHHHH-------HHHH-HHhCccccCc--hhccc----c
Confidence 012666788999988766788888889999997653200 0000 0000000000 00000 2
Q ss_pred CCeeEEEeecCCCEE-EEEeCCe-------------EEEEeCCC---------ceEEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 841 ESAACIALSKNDSYV-MSASGGK-------------VSLFNMMT---------FKVMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~l-a~~sdg~-------------i~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
..|..+..|.+.-+. .+-+.+. ..+..... ...++.+.||...|.+++.+| +++++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnli 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEE
Confidence 223333333222111 1100000 00010000 123455678999999999999 99999
Q ss_pred EEEeCCc-----cEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC
Q 001157 898 AIGMEDS-----SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1135)
Q Consensus 898 asg~~dg-----~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~ 972 (1135)
|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++|++++.|.++.+|.......... .......|.
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~Ht- 618 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHT- 618 (764)
T ss_pred eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh-hhccccccc-
Confidence 9998653 599999999998999999999999999999999999999999999999865443222 122344555
Q ss_pred CCCCceeEEECCCCcEEEE-EECCcEEEEec-cC--CcccccCCCCCCCCCeEEEEEcc-----CCCEEEEEecCCcEEE
Q 001157 973 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALPAPISSAIYSC-----DGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~--~~~~~~~~~~~h~~~i~~~~~s~-----dg~~l~s~~~dg~V~v 1043 (1135)
.-|.++.|+||+.++++ +.|++|+||.. +. +++..+ ....++..|+++++.| .+..+++|-+.|.|.+
T Consensus 619 --RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 619 --RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred --eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 67899999999999999 68999999999 44 555553 2245689999999986 2337899999999999
Q ss_pred EecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCC---------CCEEEEEecCCcEEEEecC
Q 001157 1044 FDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSE---------PNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1044 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~---------~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
|....-....+... ..........+|...|..++|+|.. ...|++|++|.+++++++.
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 696 WRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 99652111111100 0011122335788999999999841 2357999999999999874
No 20
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.8e-41 Score=335.84 Aligned_cols=285 Identities=20% Similarity=0.321 Sum_probs=263.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+-..+|..+.||+|++.||||+.+|.++||+..+...+. +|.+|...|.++.|+|....+.++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 466789999999999999999999999999999886555 88999999999999998422379999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+..++..+.+|...|..++|+|++ ++|+|++.|.+-++||++++.......+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999976 99999999999999999999999999999999999999999999999986
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 644 (1135)
|..-+|||+++|+++..+.+|.. .|..++|+|+|..+++||.|++++|||++..+.+.++.+|.. .|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 67789999999999999999888 899999999999999999999999999999999999988855 799999998 88
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+|++++.|++++||...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998877 56655544
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEe
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 800 (1135)
|+++|.++.+++|++.+++++-|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 667889999999999999999999999994
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=327.46 Aligned_cols=476 Identities=15% Similarity=0.264 Sum_probs=356.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+...|-++.|+|...+ +.++-..|.|.|||.++...+.. +.-..-+|++..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 6789999999999985 55677899999999999877654 233566899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h~~~v~~l 503 (1135)
+|++|..|+||+.++++.++ .|.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 8899999999999999988 8999999999999999864 6788999999999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+|+|..+ +.++++|.|++|++|.+....+..++.+|...|+|+.|-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999855 899999999999999999999999999999999999998865 58998874 8899999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
++.+|.+ .|+.++|+|.-..+++|++||+++||+..+.+...++.... ..+.|++-.+.+..+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888877553 37999999998888999988887654 33
Q ss_pred CCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccc
Q 001157 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1135)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
..+ ...-.+ ...
T Consensus 298 gre-eP~vsM-------------------------------------------------------------d~~------ 309 (794)
T KOG0276|consen 298 GRE-EPAVSM-------------------------------------------------------------DSN------ 309 (794)
T ss_pred cCC-CCceee-------------------------------------------------------------cCC------
Confidence 222 000000 000
Q ss_pred cccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceec
Q 001157 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1135)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
| -.+|-.. +.|..+..- +.+.++
T Consensus 310 ---g-KIiwa~~-------------------~ei~~~~~k-------s~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVH-------------------SEIQAVNLK-------SVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcC-------------------ceeeeeece-------eccCcc---------------------------
Confidence 0 0112111 011111000 000000
Q ss_pred cCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe
Q 001157 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~ 901 (1135)
+...|+.+....+..+.-+-....++.||+|+++++|+||.-.||..-..+ ..+-+.-....|++ |....|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 112222211111110000112345888999999999999999998743221 12446667889999 777888888
Q ss_pred CCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEE
Q 001157 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1135)
Q Consensus 902 ~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1135)
.++.|+++ .+.+..+.+...-. +..+ -.|.+|...+ ++.+++||.++++... ..+ .....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeE
Confidence 89999998 56666665542211 1111 2355555555 5559999999987433 322 2236899
Q ss_pred ECCCCcEEEEEECCcEEEEecc
Q 001157 982 FHNDQTHLLVVHESQISVYDSK 1003 (1135)
Q Consensus 982 fspdg~~l~~~~d~~i~vwd~~ 1003 (1135)
|+.+|.+++.+.|....++..+
T Consensus 469 w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred EecCCCEEEEEecCceeEEEec
Confidence 9999999999888887776663
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.5e-39 Score=306.20 Aligned_cols=292 Identities=17% Similarity=0.277 Sum_probs=264.1
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..++|+ |.+.|.++.|++|.+ .++++|+||.+.|||.-+..+.+. +.-...+|..+||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 347777 999999999999998 688999999999999988766553 33467799999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC--C-ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPT--G-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
|.|+++|+|+-|+...||++.+. + ......++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999865 2 2344447889999999999998775 8999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|.+.|.++.+.|. +++.+++|+.|+..++||++.+..+..+.+|...|++++|.|+|.-+++|+. |++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999985 5599999999999999999999999999999999999999999999999974 889999999
Q ss_pred CCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+..+.+..|.... ..+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 9999988887543 23699999999999999999999999999999999999997755 89999999999999999999
Q ss_pred CcEEEEE
Q 001157 654 NGIKILA 660 (1135)
Q Consensus 654 g~v~iw~ 660 (1135)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-38 Score=300.90 Aligned_cols=297 Identities=23% Similarity=0.320 Sum_probs=254.3
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+..+++ |.+.|+.++..+.+..++++++.|.++.+|++.......- .+...+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 455666 9999999999999888999999999999999976532211 1112378999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH- 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h- 496 (1135)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .|+||+.|++|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999986555 7889999999999999999 79999999999999965 5555666544
Q ss_pred -CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 497 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 -~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
...|.+++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+ +++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEcc
Confidence 7999999999998779999999999999999999999999999999999999999999999987 48889999999
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC-------CCCcCeEEEecCCCEEE
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~ 648 (1135)
.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988777544 79999999987555555 455699999999998887754321 22345789999999999
Q ss_pred EEeCCCcEEEEECC
Q 001157 649 VTTSDNGIKILANS 662 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~ 662 (1135)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=326.07 Aligned_cols=553 Identities=14% Similarity=0.203 Sum_probs=408.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.|+|++=..+-- ++|. ...|.+|.- |+.+.. ...+|...|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~v-y~A~---g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV-YVAS---GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE-EEec---CcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence 678999998776642 3333 345666653 332221 2445666666544 4588999
Q ss_pred EEeCCCeEEEEEcCCC-CceeeeeEe-ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 425 VAFSKHIVHLYTYNPT-GELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~-~~~~~~~~~-~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
++..++.+.||+..++ ........+ +...+.|+++. +|.---.-++.|+.+|.+.+|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999885 221111122 22222377664 45432225889999999999999999999999999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.-+|.- +.++.|..+|+|.+++++.++.+..+....+.|++++|..||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9887766 78999999999999999999999999887899999999999998877653 467899999999888888
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe----eeEEEeCCCCCCCcCeEEEe-cCCCEEEEEeCCCcEE
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~ 657 (1135)
....+.+.+....|-|....+++++.|+.+++|=.+++. .+..-.+ |..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G--Hs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG--HSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC--CCCCchheeeeccCcEEEEecccCcchh
Confidence 775555588889999999999999999999888666433 3333334 45578999998 5899999999999999
Q ss_pred EEECCCcchheeecc-CcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccC
Q 001157 658 ILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 658 iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.+++.... .-+.+. .|....
T Consensus 361 ~fs~~~e~-~~~~l~~~~~~~~---------------------------------------------------------- 381 (910)
T KOG1539|consen 361 SFSVISES-QSQELGQLHNKKR---------------------------------------------------------- 381 (910)
T ss_pred hhhhhHHH-HhHhhcccccccc----------------------------------------------------------
Confidence 98875431 111110 110000
Q ss_pred ccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC-----cceeeeecccceeEEEeecccCCCCCCc
Q 001157 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQRTERNPSGK 811 (1135)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 811 (1135)
.+.+.+.... ...-.+|..+++... ...+++--++...+.|++....
T Consensus 382 -------~kk~~~~~~~---------------~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~------ 433 (910)
T KOG1539|consen 382 -------AKKVNVFSTE---------------KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT------ 433 (910)
T ss_pred -------cccccccchh---------------hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc------
Confidence 0000000000 001122333333321 1223333334567777764311
Q ss_pred ccccccceeccCCCCCccc--cCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe---eCCCCCee
Q 001157 812 ATANVAPQLWQPPSGTLMT--NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---MSPPPAAT 885 (1135)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~---~~~~~~v~ 885 (1135)
.|.-.- ..++. - ...+++++.++.|++.+.|+ .|.|.+|++++|-....+ ..|.++|+
T Consensus 434 -------------~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 434 -------------SGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT 497 (910)
T ss_pred -------------cccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee
Confidence 111000 00111 1 56799999999999999998 899999999999998888 57999999
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeee
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 965 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~ 965 (1135)
.++... -++.+++++.+|-+.+||..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+.+ +.+
T Consensus 498 gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR 570 (910)
T KOG1539|consen 498 GLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVR 570 (910)
T ss_pred EEEecC-CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhH
Confidence 999998 789999999999999999999888887763 3568888888888899999999999999999866 667
Q ss_pred cCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-CcEE
Q 001157 966 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIG 1042 (1135)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-g~V~ 1042 (1135)
.+.||. ..+++++|||||++|++ +.|++|++||+ ++.++..+.. ..+.+++.|||+|.+||+...| .-|+
T Consensus 571 ~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 571 EFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred Hhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEE
Confidence 788888 79999999999999999 67999999999 7877776654 7899999999999999999988 6799
Q ss_pred EEecCC
Q 001157 1043 VFDAET 1048 (1135)
Q Consensus 1043 vwd~~~ 1048 (1135)
+|.-.+
T Consensus 644 lWsNks 649 (910)
T KOG1539|consen 644 LWSNKS 649 (910)
T ss_pred EEEchh
Confidence 996554
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.5e-37 Score=293.85 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=229.7
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ ++|.|+-|....||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999998877655 4455677899999999999 89999999999999
Q ss_pred EcCCC------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC-CCCE
Q 001157 483 DVVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (1135)
Q Consensus 483 d~~~~------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1135)
++.+. +..+.+.+|.+.+.+..|..+ ..|+++|.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99855 345678999999999999763 6899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++|+- |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999985 77799999999999999999988 8999999999999999999999999999999999999877777789
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++||..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997655
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=323.02 Aligned_cols=552 Identities=17% Similarity=0.250 Sum_probs=391.3
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
+..|-.++|+|... .+.++-..|.|++||++-+.++.. +.+|.++|..++|+|++.++++
T Consensus 9 SsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred cccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEEe
Confidence 46899999999998 566788899999999999988875 7789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
|++|..|++|+.++.+++. ++.||-+.|..+.|++.-. +|+++|+|.+|+||+.++++++..+.||...|.|..|
T Consensus 69 GGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999987665 8889999999999999988 8999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCC-----------------------------ceEEecCCCCeEEEEEEcCCCCEE
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLG-----------------------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
+|.. ..++|+|.|.+||+||+...+ ....+.+|...|+-++|+|.-..+
T Consensus 144 hptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 144 HPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred CCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 9987 799999999999999984211 112567788899999999999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCc--eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
++|+. |..|++|.+..-+ .+.+..+|.+ .|.++-|+|..+.+++.|+|++|++||+...+.++++..... .
T Consensus 222 VSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend--R 294 (1202)
T KOG0292|consen 222 VSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND--R 294 (1202)
T ss_pred EecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--e
Confidence 99985 7779999987544 4567788888 899999999999999999999999999999999999975533 6
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCC
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1135)
.+.++-+|..++++.|- |+.+.+|.++.. +...
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleRE-rpa~--------------------------------------------- 327 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLERE-RPAY--------------------------------------------- 327 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEccc-CceE---------------------------------------------
Confidence 89999999999888665 556667766533 1110
Q ss_pred CCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
+++.++ .+.+ .+.
T Consensus 328 ----------------------------------------------------------------~v~~n~-LfYv--kd~ 340 (1202)
T KOG0292|consen 328 ----------------------------------------------------------------AVNGNG-LFYV--KDR 340 (1202)
T ss_pred ----------------------------------------------------------------EEcCCE-EEEE--ccc
Confidence 011111 0111 134
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCC-CCCCCCeeEEEeecCCCEEEEEe---CCeEEEEeCCC
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINES-KPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMT 870 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~ 870 (1135)
.|+-+|+.+.+..+- . .++.. .. ..++.++.++|....+..++ +|...++.+..
T Consensus 341 ~i~~~d~~t~~d~~v-------------------~--~lr~~g~~-~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 341 FIRSYDLRTQKDTAV-------------------A--SLRRPGTL-WQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred eEEeeecccccccee-------------------E--eccCCCcc-cCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 444444433111000 0 01110 01 45678899999877666664 46666666543
Q ss_pred ceEEEEe-e--CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 871 FKVMTMF-M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 871 ~~~~~~~-~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
...-..- + .-.....++-... +++.+.--.+..+.+=++.+. ..+.+..- ..+..+-+.-.|.+|+.. ...
T Consensus 399 ~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~ 472 (1202)
T KOG0292|consen 399 DSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDS 472 (1202)
T ss_pred cccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCe
Confidence 2110000 0 0011222332222 233333333445555554432 22333221 234455566666655533 335
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1027 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~ 1027 (1135)
|.++|++..+...+..+ ..+..+.||+|+.+++.-+..+|.+++.+.+.+..... .-+|.+-+|..
T Consensus 473 v~lfdvQq~~~~~si~~----------s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde 538 (1202)
T KOG0292|consen 473 VTLFDVQQKKKVGSIKV----------SKVKYVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDE 538 (1202)
T ss_pred EEEEEeecceEEEEEec----------CceeEEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceecc
Confidence 99999998765433221 46889999999999998788899999987666655432 55788999999
Q ss_pred CCCEEEEEecCCcEEEEecCCCc--eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcc
Q 001157 1028 DGLLVYAGFCDGAIGVFDAETLR--FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1028 dg~~l~s~~~dg~V~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
||-+|++... .|+ |-+.+|. .++++. -..+++.+ .|+.+..-..|+.+...++.-.+-
T Consensus 539 ~gVfiYtT~n--Hik-Yal~~GD~GIikTLd------------~~iyitkv-----~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 539 DGVFIYTTLN--HIK-YALENGDSGIIKTLD------------KPIYITKV-----KGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred CceEEEEehh--hhh-hhhccCCcceEEecc------------cceEEEEe-----eCCEEEEEecCCCeEEEeechHHH
Confidence 9988887653 233 3333332 233332 12455555 577888888999999988876664
Q ss_pred cc
Q 001157 1106 KW 1107 (1135)
Q Consensus 1106 ~~ 1107 (1135)
.|
T Consensus 599 ~F 600 (1202)
T KOG0292|consen 599 RF 600 (1202)
T ss_pred HH
Confidence 44
No 27
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=296.40 Aligned_cols=540 Identities=16% Similarity=0.211 Sum_probs=390.4
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d 429 (1135)
..+-+-|.|..+..++ +.+.+++++...+.. +.+|...|.|++.+||.-++|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCccc
Confidence 3455667776333333 356777776533222 67899999999999999999987544
Q ss_pred C--------eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE--EcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 430 H--------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--CGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 430 g--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
| .+++||..+-..+. .+......|+|++|++-....++.. -+.+..+.+||.+.+......+..+..
T Consensus 126 g~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 59999977654444 5556677899999998543323333 356678999999998888888778888
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|....|+|..+ +++++ ...+.+.+|+++.+....+. .. ....|.|++|.++|..+- + |.+|.|.||+..
T Consensus 203 v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCC
Confidence 99999999874 45555 45789999999877665432 22 235899999999998764 3 348899999999
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
+.+..+....|.. .|.+++.-.+|..| +|+.|..|..|| ..-+.+..++.+.....|..++-... -|+.|...+.
T Consensus 276 ~~~~~k~~~aH~g-gv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAHDG-GVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNF 350 (626)
T ss_pred CceEEeEeeecCC-ceEEEEEecCccEe-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCC--cEEEeeccce
Confidence 8888887776665 89999999988654 599999999999 55566666666655566776654332 2666766666
Q ss_pred EEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|..=.++++..+. .
T Consensus 351 iL~Gt~~~~f~~~--v---------------------------------------------------------------- 364 (626)
T KOG2106|consen 351 ILQGTLENGFTLT--V---------------------------------------------------------------- 364 (626)
T ss_pred EEEeeecCCceEE--E----------------------------------------------------------------
Confidence 5544444331110 0
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
.+|......++..|+..++++++.|+.+++|+-..
T Consensus 365 ---------------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k------------ 399 (626)
T KOG2106|consen 365 ---------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK------------ 399 (626)
T ss_pred ---------------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc------------
Confidence 12556778899999999999999999999997110
Q ss_pred ccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCC
Q 001157 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 894 (1135)
.+|.. . - ..++.|+.|+|.| .+|.|. .|...+.|.++...+..-. .+.+++++.|+| +|
T Consensus 400 ---~~wt~--------~-----~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G 459 (626)
T KOG2106|consen 400 ---LEWTK--------I-----I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DG 459 (626)
T ss_pred ---eeEEE--------E-----e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CC
Confidence 11211 0 1 6778899999999 899998 8999999999966555444 488999999999 99
Q ss_pred cEEEEEeCCccEEEEEcccce-EeEe-ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDE-VKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~-~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~ 972 (1135)
.+||.|+.|+.|+||.+..+. ...+ -+.|..+|+.|.||+|+++|.+.+.|-.|..|....-+..
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~------------- 526 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI------------- 526 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc-------------
Confidence 999999999999999987543 2222 2344588999999999999999999999999943332111
Q ss_pred CCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCcee
Q 001157 973 PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1135)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~ 1052 (1135)
..+..+.|....-.| + +. ..+..|+..|..++-|.+.+++|+|.+.|.|++|...--...
T Consensus 527 --ts~kDvkW~t~~c~l--G-------F~---------v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 527 --TSVKDVKWATYTCTL--G-------FE---------VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred --ceecceeeeeeEEEE--E-------EE---------EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 123344443221110 0 00 011234667888888999999999999999999988754432
Q ss_pred eccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1053 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
-+.+...+|+..+++++|.-.| ..+++.+.|..|..|++
T Consensus 587 --------A~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 --------APSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred --------ccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 2345567999999999999944 56666669999999987
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=310.08 Aligned_cols=473 Identities=15% Similarity=0.212 Sum_probs=346.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34588999999999999999999999999999999987777 6666778999999998777 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCC-CCEEEEEee
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSAD-GTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 561 (1135)
..+++.++.|.+|.+.|.+++.||.. .+++|+|.|-+|++||++..- +...+.+|.+.|.+++|+|. .+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 899999999999999998753 56689999999999999994 567888886
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC--CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .+|++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 78899999999999999999988 89999998754 7999999999999999999999999998865 799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|.-.++++|+.||++|||+..+- ++..++.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997655 22222211
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 799 (1135)
.-.++.+++..+.+..+++|...|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 12346666666666667777666665441
Q ss_pred eecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC
Q 001157 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879 (1135)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~ 879 (1135)
+ ......+..++.|+.+-+... .|.--++.
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~-ei~~~~~k---------- 326 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHS-EIQAVNLK---------- 326 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCc-eeeeeece----------
Confidence 0 112223445555554433211 11100100
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe----ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~----l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+.+.++ ++..|+.+.. +-.-.-....++-||+|++++.|+ ||.-+||..-.
T Consensus 327 -------------------s~~~~~-----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala 381 (794)
T KOG0276|consen 327 -------------------SVGAQK-----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALA 381 (794)
T ss_pred -------------------eccCcc-----cccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeee
Confidence 011111 2222222111 100001123467799998887776 77777876433
Q ss_pred cccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEE
Q 001157 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYA 1034 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s 1034 (1135)
.+ .... +.-....|++|....++ -+++.|+++ -+.+..+.+.... . ..+--.|.+|..
T Consensus 382 ~R-------nK~f------G~~~eFvw~~dsne~avRes~~~vki~-knfke~ksi~~~~----~---~e~i~gg~Llg~ 440 (794)
T KOG0276|consen 382 LR-------NKAF------GSGLEFVWAADSNEFAVRESNGNVKIF-KNFKEHKSIRPDM----S---AEGIFGGPLLGV 440 (794)
T ss_pred hh-------hccc------ccceeEEEcCCCCeEEEEecCCceEEE-ecceecccccccc----c---eeeecCCceEEE
Confidence 11 1111 45578899999666666 678889888 5555555554321 1 111234555555
Q ss_pred EecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1035 GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1035 ~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
.+ ++.+++||-+++++++++. ..+-.+.|+. +|.+++.++.|. .++..++
T Consensus 441 ~s-s~~~~fydW~~~~lVrrI~--------------v~~k~v~w~d-~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 441 RS-SDFLCFYDWESGELVRRIE--------------VTSKHVYWSD-NGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred Ee-CCeEEEEEcccceEEEEEe--------------eccceeEEec-CCCEEEEEecCc-eeEEEec
Confidence 55 6789999999999999986 4455788987 777777776554 5555554
No 29
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.8e-35 Score=315.37 Aligned_cols=582 Identities=15% Similarity=0.193 Sum_probs=396.3
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC---EEEEEeC
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~---~la~~~~ 428 (1135)
..|.|.+ ++|.|. ...|.+||-.+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456666 455554 6789999976552222 3789999999999999888 8999999
Q ss_pred CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe--eEEEecCCCCCe--EEEE
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV--YSVC 504 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~h~~~v--~~l~ 504 (1135)
|+.|++|.++. +.+.....+.+|...+ +++..... .......|+++.+||.+..+ +...++-..+.+ .+++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~--~cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKEC--VCVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeE--EEEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 4455566777766555 55543333 23333789999999985555 222332222222 3445
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCC--CceEEecCCCCeEEEEEEcCCCC---EEEEEeeCCCCCceEEEEeCCCCc-
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1135)
+.++.+.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ .|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555433345566677788888865433 34558899999999999987655 444444 58899999874222
Q ss_pred --------------------eeEE----------eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeEEE
Q 001157 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTV 626 (1135)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 626 (1135)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+.. -+..+
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 89999999999999999999999999987652 22222
Q ss_pred --eCC-CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccc
Q 001157 627 --DAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 627 --~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1135)
..- +........-|+|++..+++-+..|..++|...+. ...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~--~~w~~~------------------------------- 354 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK--TFWTQE------------------------------- 354 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc--cceeec-------------------------------
Confidence 111 12234678899999999999999999999983222 000000
Q ss_pred cccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC
Q 001157 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 783 (1135)
....+|...|+.+++.|.
T Consensus 355 --------------------------------------------------------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 355 --------------------------------------------------------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred --------------------------------------------------------------cccccccccceeeeecCC
Confidence 000347888999999999
Q ss_pred cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeC-Ce
Q 001157 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 862 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sd-g~ 862 (1135)
|.+|++.+.|.+-|++---..+. -|. .+.. ..-| ...++|++|-+....+++|.| ..
T Consensus 373 GeflLsvs~DQTTRlFa~wg~q~-------------~wH-----EiaR---PQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWGRQQ-------------EWH-----EIAR---PQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeeccccccc-------------cee-----eecc---cccc-cccceeeehccCCceeeeccccee
Confidence 99999999999988874221000 011 1111 1116 889999999886666777774 66
Q ss_pred EEEEeCCCce-----EE--EEeeCC-----CCCeeEEEEeCCCCcEEEEEeCCccE---EEEEc-----------cc---
Q 001157 863 VSLFNMMTFK-----VM--TMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSV---QIYNV-----------RV--- 913 (1135)
Q Consensus 863 i~iwd~~~~~-----~~--~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v---~iwd~-----------~~--- 913 (1135)
+|+|+....- .+ ..+.+. ...|..+-.|. ..-+. --..+|.. ..=.. .+
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn-Ka~~~-~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN-KAFFP-GETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC-CCCcc-cccccccccceeeecccccCchhccCCChHHH
Confidence 8999876310 00 011111 12244444443 11110 01111111 11000 00
Q ss_pred ------ceEeEeecCccCceEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 914 ------DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 914 ------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
...+.++.||...|++++.+|+|+++||++.. ..|++|+..+... .+.+.+|+ ..|+.++|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~F 580 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAF 580 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEE
Confidence 11234678999999999999999999999854 4599999998763 34566777 68999999
Q ss_pred CCCCcEEEE-EECCcEEEEec-c-CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc--eeeccCC
Q 001157 983 HNDQTHLLV-VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR--FRCRIGP 1057 (1135)
Q Consensus 983 spdg~~l~~-~~d~~i~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~--~~~~~~~ 1057 (1135)
||||++|++ +.|+++.+|.. + ...-..+.....|..-|++..|+||+.++||+|.|++|+||....+. .+.++
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~-- 658 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF-- 658 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--
Confidence 999999999 88999999998 2 22223344467889999999999999999999999999999999883 33332
Q ss_pred CcccCccccCCCCCCcEEEeeCCCCCC----EEEEEecCCcEEEEecC
Q 001157 1058 SAYIPTYAVSSNTAHPLVIAPHPSEPN----QIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~sp~~~~----~l~s~~~Dg~i~lW~~~ 1101 (1135)
....++..|++++|.|-+.+ .+++|-..|.|.||+..
T Consensus 659 -------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 -------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred -------chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 23467789999999885443 78999999999999976
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-36 Score=282.93 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=243.7
Q ss_pred CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001157 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 358 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~ 437 (1135)
..-+|++++.|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.. .||+||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 345899999999999999999998875 34456789999999999999999665 4999999
Q ss_pred CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE
Q 001157 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1135)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~ 517 (1135)
+++... +...+.+|...|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|.. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998763 4558899999999999999999 89999999999999999977766665 88999999999976 789999
Q ss_pred EcCCeEEEEeCCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC------ceeEEeecccCCc
Q 001157 518 AIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 590 (1135)
..+|.|++||+....+...+. .....|.++...|||.+++++. ..|..++|++-.. .++..++.|.. -
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 999999999999876655443 3456899999999999999885 4788999998653 35567788777 6
Q ss_pred eeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 591 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
+..+.+|||+++|+++|.|.+++||+.++. +....+. ++...+..++||.||++|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 778889999999999999999999999988 3334444 44568999999999999999999999999999999 6677
Q ss_pred eccCccc
Q 001157 670 MLEGRAM 676 (1135)
Q Consensus 670 ~~~~~~~ 676 (1135)
...+|..
T Consensus 295 qy~gh~K 301 (311)
T KOG0315|consen 295 QYQGHHK 301 (311)
T ss_pred ecCCccc
Confidence 7777654
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-36 Score=285.03 Aligned_cols=296 Identities=17% Similarity=0.201 Sum_probs=250.1
Q ss_pred CCCCCceEEEEEeCC-cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 769 SIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |.+.|.++. .+.+ | ...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r-~~~G--H-sH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVR-RLTG--H-SHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceee-eeec--c-ceEecceE
Confidence 349999999999987 456788888999999998753 223444433 3556 7 77999999
Q ss_pred eecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC-ccC
Q 001157 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQN 925 (1135)
Q Consensus 848 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~ 925 (1135)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|.+|++........... |.+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999999 99999999999999999999999999999999 899999999999999999876655444443 378
Q ss_pred ceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec
Q 001157 926 RITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1135)
Q Consensus 926 ~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~ 1002 (1135)
-|.|+.|+|+ ..+|++++.|++|++||+.+.+ ....+.||. ..++.+++||||...++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 6799999999999999999966 455666777 78999999999999999 57999999999
Q ss_pred -cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCC
Q 001157 1003 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1003 -~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 1081 (1135)
.++++..+ +|...|.+++|+|+...|+.+. +..|+|||++++..+..+.+....+ .........+.++|++
T Consensus 222 ~~~k~lysl----~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~--s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 222 NEGKNLYSL----EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP--SSKAGDPICLSLAWSA- 293 (315)
T ss_pred cCCceeEec----cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc--ccccCCcEEEEEEEcC-
Confidence 67775554 3478999999999998888776 5569999999999999988775444 2234456788999999
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001157 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
||..|.+|-.|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 899999999999999999864
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.6e-35 Score=287.58 Aligned_cols=339 Identities=18% Similarity=0.287 Sum_probs=291.3
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEe
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd 527 (1135)
.|..|+..|.+++.+|+.. +++||+.|....+|++.+|.....+.+|...|+++.|+.++ .+|+||..+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEEEEE
Confidence 6788999999999999777 89999999999999999999999999999999999997755 9999999999999999
Q ss_pred CCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe
Q 001157 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1135)
..++.....+......+.-+.|+|.+..|++|+. ||.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988878889999999999999999874 88899999999889999999887 899999999999999999
Q ss_pred cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCc
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
.||+|++|++.+++++..+....+ ....++.++..+..++.|+.++.+++-+..+| +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 999999999999999999976554 36788999999999999999999988877666 21111110
Q ss_pred CCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcC
Q 001157 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1135)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
++..+. ....+....|.++.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00001033445555
Q ss_pred eecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc
Q 001157 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 848 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
++..-.+.|+|+ ||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.||.|+.||..+|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999999877766666 888899999987 478999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
|.+++++|++++++|+|.|++.+|+++.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999864
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.5e-35 Score=273.40 Aligned_cols=295 Identities=14% Similarity=0.235 Sum_probs=252.5
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc--eeEEeecccCC
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1135)
-+|++++.|.+||+|...++.+..++....+.|+.+...|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 5679999999765 6889999987
Q ss_pred ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
.|.++.|.-+|+++++||+||+++|||++...+...++. ..+|+++..+|+...|++|..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999999666655543 358999999999999999999999999999766 2211
Q ss_pred eccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccc
Q 001157 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 749 (1135)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred cccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCcc
Q 001157 750 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 829 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1135)
.|+ ....|+++++.|||..++++...|...+|++..... .+....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceE
Confidence 111 235689999999999999999999999999865221 111111
Q ss_pred ccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCc-eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEE
Q 001157 830 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1135)
Q Consensus 830 ~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~ 907 (1135)
...++. | .+.+....+|||+++||+++ |.+++||+.++. +.-..+.+|..-+...+||. |+.||++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 7 88899999999999999998 999999999998 77778899999999999999 999999999999999
Q ss_pred EEEcccceEeEeecCccCceEEEEEc
Q 001157 908 IYNVRVDEVKTKLKGHQNRITGLAFS 933 (1135)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s 933 (1135)
+|++..++.++...+|.....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999988887764
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=306.94 Aligned_cols=480 Identities=17% Similarity=0.261 Sum_probs=352.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+...+..|..++|+|...+++++-..|.|++||.+-+..+. .|..|.++|..++|+|++. ++++|++|-.|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999988877 7889999999999999998 999999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
..+.+++.++.||-+.|..+.|++.- .+++|+|.|.+|++|++.+..++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999876 89999999999999999999999999999999999999999999999986
Q ss_pred CCCceEEEEeCCC--------C-------------------c--eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 564 EGESHLVEWNESE--------G-------------------A--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 564 ~~~~~i~~wd~~~--------~-------------------~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
|.+|++||+.. + . ....+.||.. .|+-++|+|.-..+++|++|..|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 77899999842 1 0 1234567766 7999999999999999999999999
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccc
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1135)
|.+..-+.-..-...+|.+.|.++-|+|...++++.+.|++|++||++.. ..+++++.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------------------- 290 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------------------- 290 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec---------------------
Confidence 99987665554445566779999999999999999999999999999766 43443322
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCc
Q 001157 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1135)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1135)
..++
T Consensus 291 ----------------------------------------------------------------------------endR 294 (1202)
T KOG0292|consen 291 ----------------------------------------------------------------------------ENDR 294 (1202)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 3355
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~ 854 (1135)
...++..|..+.++++. |+-+.+|.+.. +.++.++ ++..
T Consensus 295 FW~laahP~lNLfAAgH-DsGm~VFkleR------------------------------------Erpa~~v----~~n~ 333 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH-DSGMIVFKLER------------------------------------ERPAYAV----NGNG 333 (1202)
T ss_pred EEEEEecCCcceeeeec-CCceEEEEEcc------------------------------------cCceEEE----cCCE
Confidence 67888999998555554 54555665532 3334333 3445
Q ss_pred EEEEeCCeEEEEeCCCceE--EEEeeCC---CCCeeEEEEeCCCCcEEEEEeCC-ccEEEEEcccceEeE-----eecCc
Q 001157 855 VMSASGGKVSLFNMMTFKV--MTMFMSP---PPAATFLAFHPQDNNIIAIGMED-SSVQIYNVRVDEVKT-----KLKGH 923 (1135)
Q Consensus 855 la~~sdg~i~iwd~~~~~~--~~~~~~~---~~~v~~l~~sp~~~~~lasg~~d-g~v~iwd~~~~~~~~-----~l~~h 923 (1135)
|...-|..|+-+|+.+.+- +..++.. ..++.++.|+|-.+..|++...| |...++.+....... ..++
T Consensus 334 LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~- 412 (1202)
T KOG0292|consen 334 LFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKG- 412 (1202)
T ss_pred EEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcC-
Confidence 5555588999999988543 3334433 36789999999445555544433 445555554321100 1111
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS- 1002 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~- 1002 (1135)
.....+-.+ ..++.+---.+..+.+=++.+..... +... ..+..+-+.-+|.+|+. +...|.+||+
T Consensus 413 -tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtkk---l~~~-------~~~~~IF~ag~g~lll~-~~~~v~lfdvQ 479 (1202)
T KOG0292|consen 413 -TGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTKK---LLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLFDVQ 479 (1202)
T ss_pred -CCCceEEEE-ecceEEEEecCcceEEecccchhhhc---ccCc-------ccccceeeccCccEEEE-cCCeEEEEEee
Confidence 112222222 22333333334556666665532111 1111 12345555666655544 4567999999
Q ss_pred cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 1003 ~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
....+.++. -.++.-+.||+|.+++|.-+ -.+|.|.+.+ .+.++.+
T Consensus 480 q~~~~~si~-----~s~vkyvvws~dm~~vAll~-Kh~i~i~~kk-L~l~~si 525 (1202)
T KOG0292|consen 480 QKKKVGSIK-----VSKVKYVVWSNDMSRVALLS-KHTITIADKK-LELLCSI 525 (1202)
T ss_pred cceEEEEEe-----cCceeEEEEcCccchhhhcc-cceEEEEecc-hhheecc
Confidence 444445443 46799999999999888776 4678888765 5556555
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=292.86 Aligned_cols=294 Identities=20% Similarity=0.320 Sum_probs=264.8
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+........|..+|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||.+.|..+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di 156 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDI 156 (406)
T ss_pred CCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEE
Confidence 3333444445889999999999996 889999999999999999998654 78999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+|+..|++||+++.|-.+.+||..+. ..+...+.+|...|.+++|-|-|. +|++++.|.+|+.|++.+|-++++|.
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEecc
Confidence 99999999999999999999999873 233336779999999999999998 89999999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC---------------CEEEEE
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---------------TRLFSC 559 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---------------~~l~~~ 559 (1135)
+|...|..++.+ .||.++++++.|.++++|-+.++++...+..|...|.+++|.|.. .++.++
T Consensus 233 ~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 233 GHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred CchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 999999999875 466999999999999999999999999999999999999997632 355555
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+ .|++|++||+.+|.++.++.+|.+ .|+.++|+|.|+||+++.+|+++++||++++++..+++.|.+ -++++.
T Consensus 311 S----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD 383 (406)
T KOG0295|consen 311 S----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD 383 (406)
T ss_pred c----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence 4 488999999999999999999988 999999999999999999999999999999999999998866 689999
Q ss_pred EecCCCEEEEEeCCCcEEEEEC
Q 001157 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|+.+..++++|+-|.++++|.-
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999963
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=301.76 Aligned_cols=342 Identities=20% Similarity=0.310 Sum_probs=275.6
Q ss_pred cCCCCCCCCCcccccCCChhhHHhhcccCCcceee-ecCCCCC-Cc-----eeecCCc----ceeEEEEe--cCCCCeeE
Q 001157 285 KHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVS-FAGVAHT-PN-----VYSQDDL----TKTVVRTL--NQGSNVMS 351 (1135)
Q Consensus 285 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-----~~~~d~~----~~~~~~~l--~h~~~V~~ 351 (1135)
++++.|.++..++|.++--.+...+...-. .... .-|+..+ +. .|. ++. +.+.+++- +-+..|..
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~-~dp~~~~~tKf~h~s~NKvkc~V~~ 101 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYL-DDPSSAFTTKFVHTSSNKVKCPVNV 101 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhcc-CCcccccccceEeccccccccceee
Confidence 466777778899999886555554433222 1111 1111111 11 112 221 22223222 24568999
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
|.|.|+|++ |++|+..|.+.+|+..+-. | ..++..|..+|+++.||++|.++++|+.+|.
T Consensus 102 v~WtPeGRR-Lltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 102 VRWTPEGRR-LLTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred EEEcCCCce-eEeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEEEcCCCce
Confidence 999999985 6789999999999974321 1 1246789999999999999999999999999
Q ss_pred EEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCC
Q 001157 432 VHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~ 510 (1135)
|++|+.+-... + .+.+| ...|++++|+|+.. .++||++|++|+|||....+....+.||.-.|.+++|+|..
T Consensus 162 iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k- 234 (464)
T KOG0284|consen 162 IKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK- 234 (464)
T ss_pred EEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-
Confidence 99999876432 2 34444 48999999999888 79999999999999999999888999999999999999987
Q ss_pred ccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc
Q 001157 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
.+++++|.|..|++||.++++++.++..|...|..+.|++++++|++++. |..++++|+++.+.++++++|.. .
T Consensus 235 -gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-d 308 (464)
T KOG0284|consen 235 -GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-D 308 (464)
T ss_pred -ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-h
Confidence 79999999999999999999999999999999999999999999999974 77899999999999999999998 8
Q ss_pred eeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 591 LGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 591 v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. ..+...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred heeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999965 566678999999999999777766664 2445589999999999999999999999999753
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6e-34 Score=281.61 Aligned_cols=329 Identities=14% Similarity=0.188 Sum_probs=279.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|+.+|.+++.+|+.+++|+|+.|....||++.++.... .+.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 67899999999999999999999999999999999998555 7889999999999999999 999999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
..++.....+...-..+.-+.|||.. .+|+.|+.||.+.+|.+.+......+.+|+.++++=.|.|+|++++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999998887677788889999965 89999999999999999998888899999999999999999999999974
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC---------CCCC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG---------GLPA 634 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~ 634 (1135)
+++|++||+.++.++..+.+.......++.++..+..++.|+.++.+++-+..+++.+....... ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 88999999999999999987666678889999999999999999999999999998887765310 0112
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCC
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1135)
|-++.++..-.+.|+|+-||+|.|||+... .+..
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~--------------------------------------------- 322 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRH--------------------------------------------- 322 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc-hhhe---------------------------------------------
Confidence 233334444455666666666666665432 0000
Q ss_pred CCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
T Consensus 323 -------------------------------------------------------------------------------- 322 (399)
T KOG0296|consen 323 -------------------------------------------------------------------------------- 322 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceE
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~ 873 (1135)
.. .| +..|..+.|-+ ..+|+++. +|.|+.||..+|++
T Consensus 323 -------------------------------------~c---~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 323 -------------------------------------IC---EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred -------------------------------------ec---cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 15 77788888888 56666665 99999999999999
Q ss_pred EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 874 ~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
+.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
No 38
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1e-32 Score=283.09 Aligned_cols=495 Identities=15% Similarity=0.203 Sum_probs=365.8
Q ss_pred cccccCCChhhHHhhcccCCcceeeecCCCCCCcee---------------ecCCcceeEEEEec-CCCCeeEEEeecC-
Q 001157 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVY---------------SQDDLTKTVVRTLN-QGSNVMSMDFHPQ- 357 (1135)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~d~~~~~~~~~l~-h~~~V~~~~fspd- 357 (1135)
.+.+...+..+-....+..+|.|++..||.-.++.. .||..+-+.+..+. -...|+|++||+-
T Consensus 87 ~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~ 166 (626)
T KOG2106|consen 87 GVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKIN 166 (626)
T ss_pred EEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccC
Confidence 445555555556666777899999999976555432 23443444444454 4678999999983
Q ss_pred -CCeEEEEE-eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 001157 358 -QQTILLVG-TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1135)
Q Consensus 358 -g~~lla~g-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iw 435 (1135)
|..+++.- +.+..+.|||+..+..... .+.....|..++|+|.+..|+..+..+.+..|
T Consensus 167 ~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw 227 (626)
T KOG2106|consen 167 GGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFW 227 (626)
T ss_pred CCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEE
Confidence 44444432 4556789999998876543 23456678899999988877777788999999
Q ss_pred EcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE
Q 001157 436 TYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 436 d~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
+.+++...+....+..+. ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...++ .|
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G---tl 301 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG---TL 301 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc---cE
Confidence 999998877666666543 4699999999998 8999999999999998888777777999999999986553 67
Q ss_pred EEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCcee
Q 001157 515 FSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1135)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1135)
++|+.|+.|..|| ..-+... .++...+.|..++-...+ |+.+.. .+.|..=.++++-. ....+|.+ ...
T Consensus 302 lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elw 372 (626)
T KOG2106|consen 302 LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELW 372 (626)
T ss_pred eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-cee
Confidence 7799999999999 3333333 344455677776643333 555543 33454444444333 34456666 788
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 593 VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.++.+|+.+.+++++.|+.+++|+ ..+++.+.... .++.++.|+|.| .+|.|+..|...+.|.++. .++..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~-- 443 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTI-- 443 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEE--
Confidence 899999999999999999999999 44555444332 367899999999 9999999999999998764 22211
Q ss_pred CcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccccccccccc
Q 001157 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~ 752 (1135)
|.
T Consensus 444 -~~----------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 444 -HT----------------------------------------------------------------------------- 445 (626)
T ss_pred -Ee-----------------------------------------------------------------------------
Confidence 10
Q ss_pred CcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccC
Q 001157 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
...++.++.|+|+|..|++++.|+.|.+|.+..+. ..+...
T Consensus 446 ------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g---------------------~~y~r~ 486 (626)
T KOG2106|consen 446 ------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG---------------------RKYSRV 486 (626)
T ss_pred ------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC---------------------cEEEEe
Confidence 23568999999999999999999999999876422 222111
Q ss_pred CCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEE--------------e----eCCCCCeeEEEEeCCC
Q 001157 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--------------F----MSPPPAATFLAFHPQD 893 (1135)
Q Consensus 833 ~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~--------------~----~~~~~~v~~l~~sp~~ 893 (1135)
-+ .| ..+|+.+.||+|++++.+-+ |-.|-.|.....+.+.. | ..+...|..++-+. .
T Consensus 487 ~k--~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~ 562 (626)
T KOG2106|consen 487 GK--CS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-C 562 (626)
T ss_pred ee--ec-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-h
Confidence 11 14 67899999999999999998 88899995443222111 1 12445577778887 8
Q ss_pred CcEEEEEeCCccEEEEEcccce---EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
.+++|+|.+.|.|++|...-.+ ....+.+|++-|++++|.-+...+++.+.|.+|..|++
T Consensus 563 ~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 563 EKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 8999999999999999876433 34567899999999999999999999889999999986
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.5e-35 Score=286.59 Aligned_cols=294 Identities=18% Similarity=0.278 Sum_probs=264.8
Q ss_pred cceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
.+.++.+.+. |.+.|.|+++-|-++ ++++|+.|++++|||+.+|+...+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3456677777 999999999999986 799999999999999999988764 7899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 414 v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+++|+--.||++++.|+.|+-||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999998887 6779999999999999888 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.||..+|.++.+.|.+ ..+++||.|++|++||++.++....+..|...+.+++.+|....+++++. ..|+-|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998776 68999999999999999999999999999999999999999999999874 3499999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe---CCC---CCCCcCeEEEecCCCEE
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---ADG---GLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~~~~s~~~~~l 647 (1135)
+..|..+..+.+|.. .|++++.+.|+ ++++|+++|.+.+||.+++...+... ..+ ....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999887 89999988876 88899999999999999987665542 111 22357889999999999
Q ss_pred EEEeCCCcEEEEECC
Q 001157 648 AVTTSDNGIKILANS 662 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~ 662 (1135)
++|..|.+|++|.-.
T Consensus 425 it~eadKtIk~~keD 439 (460)
T KOG0285|consen 425 ITGEADKTIKMYKED 439 (460)
T ss_pred EeccCCcceEEEecc
Confidence 999999999999754
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-34 Score=291.48 Aligned_cols=280 Identities=18% Similarity=0.277 Sum_probs=253.2
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|++++|+.+|. +||+|+.||.++||+...+. +.+ +..|+++|.++.|+.+|++|++
T Consensus 235 nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~t-------------------l~~HkgPI~slKWnk~G~yilS 293 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IST-------------------LGQHKGPIFSLKWNKKGTYILS 293 (524)
T ss_pred cCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hhh-------------------hhccCCceEEEEEcCCCCEEEe
Confidence 46899999999997 89999999999999987543 332 6789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
++.|+++.+||..++.... .+.-|..+-..+.|-.+.+ +++++.|+.|+|+.+...+++.++.+|.+.|.++.|
T Consensus 294 ~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW 367 (524)
T ss_pred ccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence 9999999999999987554 4556888778899987765 899999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC---------EEEEEeeCCCCCceEEEEeCCC
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
+|.+ .+|+++|.|+++++|.+........+..|...|..+.|+|+|. .+++++. +++|++||+..
T Consensus 368 n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~ 441 (524)
T KOG0273|consen 368 NPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVES 441 (524)
T ss_pred CCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccC
Confidence 8876 8999999999999999998888999999999999999999653 5677764 88999999999
Q ss_pred CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
+.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.++++.++.....+ .|..++|+.+|..|..+..|+.+
T Consensus 442 gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 442 GVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred CceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCCc
Confidence 999999999988 99999999999999999999999999999999999987654 48999999999999999999999
Q ss_pred EEEECC
Q 001157 657 KILANS 662 (1135)
Q Consensus 657 ~iw~~~ 662 (1135)
++.|+.
T Consensus 518 cvldlr 523 (524)
T KOG0273|consen 518 CVLDLR 523 (524)
T ss_pred eEEEec
Confidence 998864
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.1e-33 Score=264.01 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=238.7
Q ss_pred EEEEec-CCCCeeEEEeecC-CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 339 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspd-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+++++ |.+.|+.++|+|- |. +||+|+.|+.|+||+...+....- ...+-.+|+..|+++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 345555 8889999999999 86 899999999999999885332110 11123579999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---eeEEEe
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 493 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~l 493 (1135)
+|.|++||+|+.|.++.||.-..+ .+.....+.||...|.|++|+++|. +||||+.|+.|-||.+..+ .++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999997754 3556668999999999999999999 9999999999999998743 467789
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC---CCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+.|...|..+.|+|.. .+|+++|.|++|++|+-.. -.+..++.+|...|.+++|++.|..|++++. +++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999988 7999999999999997663 2357788999999999999999999999974 88999
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe------eeEEEeCCCCCCCcCeEEEecC-
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKE- 643 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~~- 643 (1135)
||-.. ..+...+...++.+.|. ...|++++.|+.|++|.-...- .+... .+.|...|++++|.|.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCC
Confidence 99755 33444444478889998 5589999999999999866421 11111 2233458999999994
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 001157 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~ 662 (1135)
..+|+++++||.+++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7799999999999999864
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=272.53 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=249.3
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|++.+
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEE
Confidence 3899999999999997 89999999999999976432111 1267999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++++.|.+++.||+++|+..+ .+++|..-|+++.-+.-|.. ++.|++.|+++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998877 77899999999996666765 78899999999999999999888875 56779999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC----Cce
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (1135)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+- .++
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 996554 78999999999999999999999999999999999999999999999875 88899999874 345
Q ss_pred eEEeecccCC---ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 580 ~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
+..+.++... ....++|+|+++.+-+|+.|..+++||..+...+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7777776431 244588999999999999999999999999999999887754 89999999999999999999998
Q ss_pred EEEE
Q 001157 657 KILA 660 (1135)
Q Consensus 657 ~iw~ 660 (1135)
.+=+
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-34 Score=280.67 Aligned_cols=305 Identities=16% Similarity=0.247 Sum_probs=265.7
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
...+.+.+|..+|+.+.|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4556778899999999999977 78899999999999999999999999999999999999999999999975 55
Q ss_pred eEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
.+.+||..+ .++++.+.+|.. .|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|.. .|..++.+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 599999886 567777888776 899999999999999999999999999999999999998865 7889999999999
Q ss_pred EEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+|+++.|.++++|-+.++ ++...+..
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~----------------------------------------------------- 275 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELRE----------------------------------------------------- 275 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhc-----------------------------------------------------
Confidence 999999999999999887 55444444
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
|+-.|.+++|.|...+ ....+
T Consensus 276 --------------------------------------------hEh~vEci~wap~~~~--~~i~~------------- 296 (406)
T KOG0295|consen 276 --------------------------------------------HEHPVECIAWAPESSY--PSISE------------- 296 (406)
T ss_pred --------------------------------------------cccceEEEEecccccC--cchhh-------------
Confidence 4455677777764420 00000
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCee
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~ 885 (1135)
.. . ... .+.++.+++ |++|++||+.++.++.++.+|.+.|.
T Consensus 297 ---------------------------at--~-~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 297 ---------------------------AT--G-STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred ---------------------------cc--C-CCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 00 0 111 567899999 99999999999999999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
.++|+| +|+||+++.+|+++++||+.+++++..+..|..-|+++.|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999964
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=277.19 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=228.7
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
++.+|.++|.|+++.|.+.++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 578999999999999999999999999999999999997554 7889999999999998887 99999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999987 79999999999999999999999999999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.++.. .|++++...
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeecc
Confidence 88999999999999999998887 89999999999999998876 599999999999888776644 688999888
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|| ++++|++.|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 6788999999999999988
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.2e-33 Score=267.89 Aligned_cols=252 Identities=16% Similarity=0.284 Sum_probs=219.3
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+.+|.++|..+.|.+|+. .|++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 3478999999999999999999999999999999976543 23336779999999999999999 8999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
||+++|+.++.+++|...|+++.....+ -.++.+++.|+++++||++..+...++. ..-+++++.|..++..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 9999999999999999999999844332 2678889999999999999877766554 3458999999999999999987
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC----CeeeEEEeCCCCCCC--c
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLPA--S 635 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v 635 (1135)
|+.|++||++.+.....+.+|.+ .|..+..+++|.++.+-+.|.++++||++- .+++..+.++.+.-. .
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 66699999999999999999999 999999999999999999999999999874 345777776654333 3
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..++|+|++..+..|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 46789999999999999999999997654
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-30 Score=275.77 Aligned_cols=502 Identities=13% Similarity=0.132 Sum_probs=351.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
...+|.|+|||.+.+.||.+-.+|.|.||++..+=... ..+.++ ...|.+++|++.+ .|.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 34579999999999999999999999999999853332 345554 4579999999655 48899999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+++.+..+....+.|++++.+|.+ ..++.|+.||.+..++...+.... .+....+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999877 789999999977777766555443 34455689999999999999999985
Q ss_pred CCCceEEEEeCCCCceeEEee-------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 564 EGESHLVEWNESEGAIKRTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
|+.|++||..++..+.... .....-|.++.|-.+ ..+++|..-|+|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 8899999999888766221 112224677777755 4799999999999999999999999987755 799
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCC
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1135)
+++..+++.++++++.|+.|.-|...++... ++.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999988876655221 000
Q ss_pred CCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccccee
Q 001157 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 796 (1135)
. .+...|...+++++..++ .+++++.|..+
T Consensus 284 ------------------------------------~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 284 ------------------------------------N------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ------------------------------------e------------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence 0 000114555666666665 46666666655
Q ss_pred EEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE
Q 001157 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1135)
Q Consensus 797 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~ 876 (1135)
.+-.... ++-..| . .-...|.+..++++.
T Consensus 314 ~i~~s~~-----------------------------~~~~~h-~----~~~~~p~~~~v~~a~----------------- 342 (691)
T KOG2048|consen 314 AICSSRE-----------------------------FKNMDH-R----QKNLFPASDRVSVAP----------------- 342 (691)
T ss_pred EEccccc-----------------------------cCchhh-h----ccccccccceeecCc-----------------
Confidence 5421110 000001 1 001111222222211
Q ss_pred eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---------eEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 877 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
.++|..--.+..+.+|.+.+. .+++....-...|.+.+.||+|++|+.+.-. .
T Consensus 343 -----------------~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~ 404 (691)
T KOG2048|consen 343 -----------------ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-R 404 (691)
T ss_pred -----------------cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-c
Confidence 222322323344555544332 1222222233458999999999999977643 4
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-E-ECCcEEEEec---cCCcccccCCCCCCCCCeEE
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V-HESQISVYDS---KLECSRSWSPKDALPAPISS 1022 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~-~d~~i~vwd~---~~~~~~~~~~~~~h~~~i~~ 1022 (1135)
+++|.++.........+....-.. .....+.|+-|+..++. + ....+.+++. +.+.+..+... +-...|..
T Consensus 405 ~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~ 480 (691)
T KOG2048|consen 405 TKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISR 480 (691)
T ss_pred eEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCCCccee
Confidence 788888763322222222222111 45788999999988877 4 4677888877 33333333332 33678999
Q ss_pred EEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1023 AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1023 ~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
++.|+||++||+.+.+|.|.+|++++++...... .-...+++++++|...+.|+.+..|+.+.-+|+..
T Consensus 481 l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-----------rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-----------RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred EEEcCCCCEEEEEeccceEEEEEcccceeecchh-----------ccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 9999999999999999999999999887654331 11267899999987888999999999999999943
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=313.38 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=251.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc--ccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+...|.++.|||+|+ .+++++.|+.+++|+..+++ .+.. +.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999998 58899999999999997666 3321 4689999999999999999
Q ss_pred EEEEeCCCeEEEEEcC-CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
+++++.|++|+|||+. .+..++ .+.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|...|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 334444 7889999999999999997 899999999999999999999999999999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+++|.+++ .+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99997765 899999999999999999988 3455555444 5999999999999999975 778999999999
Q ss_pred ceeEEeecccCC--ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe--CC
Q 001157 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1135)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d 653 (1135)
..+..+.+|... .+.....++.+.++++|+.|+.|++|+..++..+..+.+|. ...+..+++++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999875 34445567889999999999999999999999999998885 45789999999999999998 68
Q ss_pred CcEEEEECC
Q 001157 654 NGIKILANS 662 (1135)
Q Consensus 654 g~v~iw~~~ 662 (1135)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 48
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-29 Score=266.93 Aligned_cols=543 Identities=14% Similarity=0.179 Sum_probs=373.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc-cCCCeeEEEEcCCCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND-AAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l 423 (1135)
...+|+|+|||.+.+ .||.|-.+|.|.||++..+=... .++.+ ....|.+++|+ +|.+|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 356899999999998 58889999999999998753321 12333 45679999999 66678
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVY 501 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~ 501 (1135)
++.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+..++...+...+ .|....+.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888899999999999987655 6667788999999999998 78999999988888888877664 3445678999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-----C---CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----A---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
++.|++++ ..+++|+.||.|++||...+......+ . ...-|+++.|-.++ .+++| |..|+|.+||
T Consensus 159 slsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWD 231 (691)
T ss_pred EEEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEc
Confidence 99998865 789999999999999999888776221 1 22357888887554 55555 4588999999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee--eEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|.-|...+.+. +.......+...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999988 899999999999999999999999998876643 222222233447899998877 899999
Q ss_pred CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCc
Q 001157 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1135)
Q Consensus 652 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1135)
.|.++.+-....- ....|.....
T Consensus 309 ~d~~l~i~~s~~~-----~~~~h~~~~~---------------------------------------------------- 331 (691)
T KOG2048|consen 309 RDFTLAICSSREF-----KNMDHRQKNL---------------------------------------------------- 331 (691)
T ss_pred eeeEEEEcccccc-----Cchhhhcccc----------------------------------------------------
Confidence 9988877543221 1111110000
Q ss_pred ccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCc
Q 001157 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811 (1135)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 811 (1135)
.+. .+.......++|+.--....+.+|.+..... .|+
T Consensus 332 -~p~----------------------------------------~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~--~g~ 368 (691)
T KOG2048|consen 332 -FPA----------------------------------------SDRVSVAPENRLLVLWKAHGVDLWRLGSVIL--QGE 368 (691)
T ss_pred -ccc----------------------------------------cceeecCccceEEEEeccccccceeccCccc--ccc
Confidence 000 0011111112233333333444454322100 000
Q ss_pred ccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEe--e---CCCCCeeE
Q 001157 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--M---SPPPAATF 886 (1135)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~--~---~~~~~v~~ 886 (1135)
..-..+....+++ ...|.+.++||||++|+.+.=...+||.++.-..+... . ...-....
T Consensus 369 -----------~~~~~Llkl~~k~----~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~ 433 (691)
T KOG2048|consen 369 -----------YNYIHLLKLFTKE----KENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASA 433 (691)
T ss_pred -----------cChhhheeeecCC----ccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhcccee
Confidence 0111122223444 67899999999999999998777888888752222221 1 12235778
Q ss_pred EEEeCCCCcEEEEEe-CCccEEEEEcccce--EeEeec--CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccc
Q 001157 887 LAFHPQDNNIIAIGM-EDSSVQIYNVRVDE--VKTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 887 l~~sp~~~~~lasg~-~dg~v~iwd~~~~~--~~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
+.|+- ++..++..+ .+..+.+.++.+.. .+..+. +-...|..|+.||+|++||..+.+|.|.+|++++.+..
T Consensus 434 i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~-- 510 (691)
T KOG2048|consen 434 ISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESH-- 510 (691)
T ss_pred eEEEe-cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceee--
Confidence 88988 555655565 77888888887653 222222 34567999999999999999999999999999997632
Q ss_pred eeee-cCCCCCCCCCCceeEEECCC-CcEEEE-EECCcEEEEeccCCcccccCCCC---------CCCCCeEEEEEccCC
Q 001157 962 RFIQ-APAGRQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSKLECSRSWSPKD---------ALPAPISSAIYSCDG 1029 (1135)
Q Consensus 962 ~~~~-~~~~~~~~~~~v~~~~fspd-g~~l~~-~~d~~i~vwd~~~~~~~~~~~~~---------~h~~~i~~~~~s~dg 1029 (1135)
.+. .++ ..++.++|+|. ...|++ ..++++.-||+..+.+..|.... ....++..+.|+|..
T Consensus 511 -~l~~rln------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n 583 (691)
T KOG2048|consen 511 -LLKVRLN------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKN 583 (691)
T ss_pred -cchhccC------cceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCC
Confidence 222 222 46899999954 445555 67899999998433333332211 114567788888766
Q ss_pred CEEEEEecCCcEEEEecC
Q 001157 1030 LLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1030 ~~l~s~~~dg~V~vwd~~ 1047 (1135)
...+.....+.+++.|..
T Consensus 584 ~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 584 SSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred ccEEEEEcCcEEEEEecC
Confidence 544444445666776654
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=253.94 Aligned_cols=287 Identities=14% Similarity=0.223 Sum_probs=247.0
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..+.+. +.++|.++.|+-||+ +..+++.|.+|++|+...|.++++ +.+|...|..++.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~ 67 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAAL 67 (307)
T ss_pred hhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeeccc
Confidence 3455566 789999999999999 566777899999999999998876 7899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC--CeeEEEec
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFE 494 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~l~ 494 (1135)
+.|...+++|+.|..+.+||+++|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .++++.+.
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhh
Confidence 9999999999999999999999998887 7889999999999999998 999999999999999876 46788888
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.....|.++.... ..+++||.||++|.||++.+...... -+.+|++++|++|++..++++. ++++++.|-
T Consensus 143 ea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlDk 212 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLDK 212 (307)
T ss_pred hhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeeccc
Confidence 8889999998743 68999999999999999977655433 4568999999999999998875 788999999
Q ss_pred CCCceeEEeecccCCce-eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 575 SEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+|+++..+.+|.+... ..++++.....+++|++||.|++||+.....+..+..+... .+.+++++|.-..++++..
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~~- 290 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITATG- 290 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEecC-
Confidence 99999999999987432 23567777789999999999999999999999999877552 4789999997777776654
Q ss_pred CcEEEEEC
Q 001157 654 NGIKILAN 661 (1135)
Q Consensus 654 g~v~iw~~ 661 (1135)
+.+..|.-
T Consensus 291 ~~~~~~~~ 298 (307)
T KOG0316|consen 291 HGDLFWYQ 298 (307)
T ss_pred Cceeceee
Confidence 45556643
No 50
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-33 Score=303.26 Aligned_cols=247 Identities=17% Similarity=0.341 Sum_probs=228.0
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC----------------------------ceeeeeEeecCCCCeeE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG----------------------------ELRQHLEIDAHVGGVND 458 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~h~~~v~~ 458 (1135)
....++|..||+|++.||.|..|..|++|.+...+ .-....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 44579999999999999999999999999987321 00123357899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1135)
+.|+|+.+ +|++||+|+++|+|.+.+..++..++||..+|+.+.|+|.+ -+++|+|.|++-++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999999865 999999999999999999999999999
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
+|-..|.|+.|+|+..|+++|+. |.++++||..+|..++.|.||.. +|.+++|+|+|++|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 78899999999999999999988 99999999999999999999999999999
Q ss_pred CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++++..+..| .+.|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 458999999999999999999999999998654
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.8e-33 Score=276.54 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=241.5
Q ss_pred CCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC
Q 001157 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1135)
Q Consensus 772 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d 851 (1135)
...|..+.+.|+|+.|++++..|.+.+|+... ......++. | ..+|+++.||++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQa--H-Ds~Vr~m~ws~~ 149 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQA--H-DSPVRTMKWSHN 149 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhh--h-cccceeEEEccC
Confidence 45788999999999999999999999997421 111122333 8 999999999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 852 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
|.++++|+ +|.|++|+..-. .+..+.+| ...|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 899999998643 34445544 48999999999 6677889999999999999988888889999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc-CCcc
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECS 1007 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~-~~~~ 1007 (1135)
++|+|...+||++|.|..|++||.+++. ++..+.+|+ .-|..+.|+|++.+|++ +.|..+++||+. .+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999988 566677777 68999999999999999 789999999995 4444
Q ss_pred cccCCCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1008 RSWSPKDALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~d-g~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
.. ..+|...|+++.|+|- ..+|.+|+.||.|..|.+...+++..+. .+|...|.+++|+| =|.+|
T Consensus 300 ~~---~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~----------~AHd~~iwsl~~hP-lGhil 365 (464)
T KOG0284|consen 300 FT---YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP----------PAHDGEIWSLAYHP-LGHIL 365 (464)
T ss_pred HH---hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC----------cccccceeeeeccc-cceeE
Confidence 44 4677999999999994 5578899999999999999666666553 48889999999999 88999
Q ss_pred EEEecCCcEEEEecCCCc
Q 001157 1087 ALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~~~~ 1104 (1135)
++|+.|.++++|.-....
T Consensus 366 ~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eecCCCcceeeeccCCCC
Confidence 999999999999886544
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=304.88 Aligned_cols=290 Identities=26% Similarity=0.427 Sum_probs=247.2
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
+...|.++.|+++|+.+++++.++.+++|+...... .....+.+ | ...|.+++|+|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~--h-~~~v~~~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSG--H-TRGVSDVAFSP 213 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccc--c-ccceeeeEECC
Confidence 467899999999999999999999999997632110 11111233 7 89999999999
Q ss_pred CCCEEEEEe-CCeEEEEeC-CCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceE
Q 001157 851 NDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 928 (1135)
|++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999 899999999 66799999999999999999999 679999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec-cCCc
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLEC 1006 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~-~~~~ 1006 (1135)
+++|++++.+|++++.|+.|++||+.++... +.....++.... .++.++|+|++.+++++ .|+.+++||+ ...+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999999999999999999999998854 345555555433 68999999999999995 6779999999 6777
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCC-CCCcEEEeeCCCCCCE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~ 1085 (1135)
+..+..+..-...+.+..++++|+++++|+.|+.|++|++.++..+..+. +| ...+..+.|+| ..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-----------~h~~~~~~~~~~~~-~~~~ 436 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-----------GHSKAAVSDLSSHP-TENL 436 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-----------CCCCCceeccccCC-CcCe
Confidence 77765543111255566778999999999999999999999988887775 66 78889999999 8899
Q ss_pred EEEEe--cCCcEEEEecC
Q 001157 1086 IALGM--SDGAVHVVEPS 1101 (1135)
Q Consensus 1086 l~s~~--~Dg~i~lW~~~ 1101 (1135)
+++++ .|+.+++|...
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99998 79999999864
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.9e-31 Score=249.58 Aligned_cols=292 Identities=17% Similarity=0.232 Sum_probs=237.0
Q ss_pred CCCCceEEEEEeCC-cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 770 IAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
+|.+++..++++|. |..|++++.|..|++|+.... .+-.. ...+. ..| ...|++++|
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s~~c-k~vld-~~h-krsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DSWTC-KTVLD-DGH-KRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------CcEEE-EEecc-ccc-hheeeeeee
Confidence 47889999999998 889999999999999986420 00001 11111 238 899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCC--ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---eEeEeecC
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKG 922 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~ 922 (1135)
+|.|++||+++ |.++.||.-.. .+++.++.||.++|.|++|++ +|.+||+++.|++|-||.+..+ ++...|+.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 99999998663 588999999999999999999 9999999999999999999844 68889999
Q ss_pred ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEe
Q 001157 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYD 1001 (1135)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd 1001 (1135)
|...|..+.|+|...+|+|++.|.+|++|+-..+. .-.+.+.+.+|. .-|.+++|++.|..|++ +.|++|+||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCcc---ceEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999999999999999999887422 234677788887 58999999999999988 5789999999
Q ss_pred ccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCC
Q 001157 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 1081 (1135)
.-... ...|+.++..++|. ...|++++.|+.|++|.-...-.-..+. +-......|...|-+++|.|.
T Consensus 224 ~~~~~------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~----l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 224 LYTDL------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN----LLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred eccCc------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH----HHHhhhcccccccceEEEcCC
Confidence 63111 13347889999998 4579999999999999877431111111 011223478889999999996
Q ss_pred CCCEEEEEecCCcEEEEecC
Q 001157 1082 EPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1082 ~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
..++|++|+.||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 58899999999999999875
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.8e-33 Score=272.70 Aligned_cols=271 Identities=22% Similarity=0.330 Sum_probs=233.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
..+|+|+.+..+ .+++|..|++|+|||.++..++.. +.||++.|.|+.| |.+.+++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEEe
Confidence 458999999543 478999999999999998877763 8899999999999 6779999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCCCCeEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~~~v~~ 502 (1135)
|+.|.+|+|||+++++.+. ++-+|...|..+.|+.. +++|++.|.++.+||+..... .+.+.||.+.|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999999887 77789999999999743 899999999999999987653 3567899999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.|+. ++++++|.|.+|++|++.+.+.+.++.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 98842 79999999999999999999999999999999988887 4678888864 88999999999999999
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeee---------EEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+.+|.. -|.++.|. .+.+++|+.||+|++||+..+..- ..+. .+.+.|..+.|. ...+++++.|
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCC
Confidence 999988 89999996 578999999999999999875422 2222 233467777774 5678889999
Q ss_pred CcEEEEECCCc
Q 001157 654 NGIKILANSDG 664 (1135)
Q Consensus 654 g~v~iw~~~~~ 664 (1135)
.+|.|||..++
T Consensus 469 dtILiWdFl~~ 479 (499)
T KOG0281|consen 469 DTILIWDFLNG 479 (499)
T ss_pred CeEEEEEcCCC
Confidence 99999999877
No 55
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=3.4e-30 Score=270.81 Aligned_cols=649 Identities=15% Similarity=0.173 Sum_probs=358.1
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
-+..+. |.+.|+.+.|||-...|||+||.|..|+||.+..|-.-.- .-+...+.+..-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecc
Confidence 344555 9999999999997777999999999999999985432110 01112244445578999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h 496 (1135)
|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++..++|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 987777777789999999999987665 8889999999999999999 999999999999999875 7788888888
Q ss_pred CCCe-EEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCc-eEEecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 497 EAPV-YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGS-RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 497 ~~~v-~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+.- ..+.|.. +-..|++.+.+ ..|++||.+.... ..++... ...|.---|.||.+.++.++ .++.++
T Consensus 213 ~~~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKL 287 (1012)
T ss_pred ccchhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceE
Confidence 7542 2344533 33567776655 5699999876543 2233222 22455567899999988876 468888
Q ss_pred EEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEe---------------------------------------c
Q 001157 570 VEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG---------------------------------------D 608 (1135)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~---------------------------------------~ 608 (1135)
+.+.+...++.- .+...........++-|....-+..+ .
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 888876543211 11100000001111111110000000 0
Q ss_pred CC-eEEEEECCCCeeeEEEeC------CCC----------------CCCcCeEEEecCCC-EEEEEe-------------
Q 001157 609 EF-QIKFWDMDNMNMLTTVDA------DGG----------------LPASPRLRFNKEGS-LLAVTT------------- 651 (1135)
Q Consensus 609 dg-~i~iwd~~~~~~~~~~~~------~~~----------------~~~v~~~~~s~~~~-~l~~~~------------- 651 (1135)
-+ .-.-|=-.+.+.+..+.. |+. ...|......|... -.-+.+
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 00 000111111111111110 000 00000000000000 000000
Q ss_pred CCCcEEEEECCCcch---------heeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCC----
Q 001157 652 SDNGIKILANSDGVR---------LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP---- 718 (1135)
Q Consensus 652 ~dg~v~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 718 (1135)
....++-.+....+. -...-++.+..+..+...++.-..+.-.. ....++..-.+.|.-.+ ..|
T Consensus 448 ~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~p--lt~~~s~~s~~~P~~~k-svPe~~~ 524 (1012)
T KOG1445|consen 448 KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTP--LTDSVSTPSVVGPAFGK-SVPEQPP 524 (1012)
T ss_pred cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcc--cccccccccccCccccc-cCCCCCC
Confidence 000001000000000 00000011111111100100000000000 00000000000111000 000
Q ss_pred CcccCccccCCCcccccCccccccccccccccccCcccCCCce------e--EEEcCCCCCCCceEEEEEeCCcceeee-
Q 001157 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI------K--ALRLPDSIAASKVVRLIYTNSGLSLLA- 789 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~------~--~~~~~~~~~~~~i~~~~~s~~g~~l~~- 789 (1135)
......+...+.......-.-...--|.+.-|.-..+....+. + ..++|+ .+--|..+.+++++
T Consensus 525 ~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-------EsnGfcan~~rvAVP 597 (1012)
T KOG1445|consen 525 VNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-------ESNGFCANNKRVAVP 597 (1012)
T ss_pred cccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC-------ccCceeeccceEEEE
Confidence 0000001011111110000000000022222221111111000 0 111111 11223444444443
Q ss_pred -ecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEEe-CCeEEEE
Q 001157 790 -LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLF 866 (1135)
Q Consensus 790 -~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~s-dg~i~iw 866 (1135)
.+..|.|-||++......|+|....- .. ...|+.+.|.| |...||++. ||.|++|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l---------------------~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lW 655 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGL---------------------FN-GTLVTDLHWDPFDDERLAVATDDGQINLW 655 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccccccc---------------------cc-CceeeecccCCCChHHeeecccCceEEEE
Confidence 45578999999987766665554321 12 66789999999 777888887 8999999
Q ss_pred eCCCc-------eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeE
Q 001157 867 NMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 939 (1135)
Q Consensus 867 d~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l 939 (1135)
.+..+ ..-..+..|...|+++.|+|-....|++++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+
T Consensus 656 r~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 656 RLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred EeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 99764 33456788999999999999777899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EE----CCcEEEEeccC---CcccccC
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH----ESQISVYDSKL---ECSRSWS 1011 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~----d~~i~vwd~~~---~~~~~~~ 1011 (1135)
||.+.||+|++|+..+++. .+..-.+.. ...-..+.|..||+++++ +. ...|.+||... ..+....
T Consensus 736 AtVcKDg~~rVy~Prs~e~----pv~Eg~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQ----PVYEGKGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred eeeecCceEEEeCCCCCCC----ccccCCCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 9999999999999988663 222222221 134457889999999988 53 45689999822 2221110
Q ss_pred CCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEecCCCc
Q 001157 1012 PKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1012 ~~~~h~~~i~~~~~s~dg~-~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
. .....+.--.+.+|.. ++++|-.|..|++|.+-...
T Consensus 810 l--Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 810 L--DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred e--cccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 0 0011122223445554 56788889999999986443
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-32 Score=269.72 Aligned_cols=288 Identities=14% Similarity=0.222 Sum_probs=237.1
Q ss_pred CCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
.|.+.|.-+.||++|++|++++.|.+..+|.+.. |.. ..+...+.+ | ..+|..+.||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------------------d~~--~kl~~tlvg--h-~~~V~yi~wS 278 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------------------DVH--FKLKKTLVG--H-SQPVSYIMWS 278 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec------------------Ccc--eeeeeeeec--c-cCceEEEEEC
Confidence 4889999999999999999999999999998642 111 223333445 8 8999999999
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc-Cc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NR 926 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~ 926 (1135)
||.++|++++ +..+++||+.+|.+.+.+.. +...+.+++|.| |+..+++|+.|+.+..||++.. .+...++-. ..
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~ 356 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPK 356 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccce
Confidence 9999999999 88899999999999888763 457899999999 8999999999999999998643 345554433 45
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~ 1004 (1135)
|.+++.++||+++++.+.|..|++++.++..... ....+ .+++..+.|.||+++++ -.+..+.+||+ ..
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 9999999999999999999999999998754321 11111 57999999999999999 68999999999 55
Q ss_pred CcccccCCCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYS-CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEP 1083 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s-~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 1083 (1135)
..++.+..+. .+.-|..-||. .|..++|+|++|+.|+||+..+|+++..+. ||+..|-+++|.|.++
T Consensus 428 ~lv~kY~Ghk-q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-----------GHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 428 KLVRKYFGHK-QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-----------GHSKTVNCVSWNPADP 495 (519)
T ss_pred hHHHHhhccc-ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-----------CCcceeeEEecCCCCH
Confidence 5555554432 13345555665 466899999999999999999999998875 9999999999999999
Q ss_pred CEEEEEecCCcEEEEecCCC
Q 001157 1084 NQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1084 ~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
.++|||++||+||+|.++..
T Consensus 496 ~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 496 EMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HHhhccCCCCeEEEecCCcc
Confidence 99999999999999998743
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=281.99 Aligned_cols=292 Identities=16% Similarity=0.261 Sum_probs=248.7
Q ss_pred ceeEEEEec-CCCCeeEEEeec-CCCeEEEEEeCCCcEEEEEcCC-ccccccccceeecccccccccccccccccCCCee
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fsp-dg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+...+.++. |...|+++.|.| .+ +||++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 556677777 999999999999 56 5999999999999999987 666664 789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
.++|+++|..+.+++.|+.|++||+++|+++. .+. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 2456899999999955 788999999999999999999999
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+..|-+.|..+.|-+.+ ..+++.+.|+++++|+.+..-.... ...+.....++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999998755 8999999999999999987665543 2334457789999999999998764 778999
Q ss_pred EeCCC---CceeEEeecccCC-ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCE
Q 001157 572 WNESE---GAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1135)
Q Consensus 572 wd~~~---~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 646 (1135)
+.+.. ....+.|.+|... --..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 88653 2233567777542 234588999999999999999999999999999999998844 789999999 5568
Q ss_pred EEEEeCCCcEEEEE
Q 001157 647 LAVTTSDNGIKILA 660 (1135)
Q Consensus 647 l~~~~~dg~v~iw~ 660 (1135)
+|+++.+|.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-30 Score=284.18 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=251.5
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++++
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999997 788888999999999988764332 457888999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+++.+|.|++|++.+++... .+..|...|.++.|+++++ ++++++.|+.|++||+.+++.+..+..|...+.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999876555 5668888999999999977 788888899999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|++ .++++++.|+.|++||++..+....+..+...+.+++|+|+++.+++++. ++.|++||+++++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 98874 78888888999999999988888888888889999999999999998864 7789999999999988887
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.+.. .+.++.|+|++.++++++.+|.|++|++.+++....+..+. ..+.+++|++++.+|++++.|+.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7766 89999999998888888889999999999998888887553 4799999999999999999999999995
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.1e-31 Score=272.17 Aligned_cols=287 Identities=18% Similarity=0.274 Sum_probs=243.1
Q ss_pred CCCCCceEEEEEeC-CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEE
Q 001157 769 SIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~ 847 (1135)
.+|...|.++.|.| .+.+|++++.|+.|+||++- + .+.+++. +.+ | ..+|.+++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy-------------------~--~~~~lrt-f~g--H-~k~Vrd~~ 265 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY-------------------D--DRRCLRT-FKG--H-RKPVRDAS 265 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEe-------------------c--Ccceehh-hhc--c-hhhhhhhh
Confidence 45999999999999 89999999999999999863 2 3333333 344 7 99999999
Q ss_pred eecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc
Q 001157 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 848 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
|+.+|..+.+++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+.+++.++.+..|-+.
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 999999999999 9999999999999999987 45678999999966689999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~ 1004 (1135)
|..+.|-++|+++++.+.|++++||+...+-.++. +.....| ...++..+|.+.++++ +.|+.|.+|.+ ..
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~--i~~~~~h-----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN--IADPEMH-----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchh--hcchhhc-----cCcceecCCCCCeehhhccCceEEEEecccc
Confidence 99999999999999999999999999988654332 2223333 3578999999999999 88999999987 21
Q ss_pred CcccccCCCCCC--CCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCC
Q 001157 1005 ECSRSWSPKDAL--PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1005 ~~~~~~~~~~~h--~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 1082 (1135)
-.........+| .+--..+.|||||++|++|+.||.+.+||.++-+.+..+. +|+..++.+.|+|..
T Consensus 418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-----------ah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-----------AHDQPCIGVDWHPVE 486 (503)
T ss_pred cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-----------cCCcceEEEEecCCC
Confidence 111111122333 4456678999999999999999999999999999888775 788999999999988
Q ss_pred CCEEEEEecCCcEEEEe
Q 001157 1083 PNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1083 ~~~l~s~~~Dg~i~lW~ 1099 (1135)
...+|+++-||.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 89999999999999996
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-31 Score=259.86 Aligned_cols=292 Identities=18% Similarity=0.275 Sum_probs=246.7
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+.+.|..|||||++|++++-||.|.+|+...++...+-+..+ ..... .+ ..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fM--------Mm-d~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFM--------MM-DDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hccee--------ec-ccceEEEeecc
Confidence 45678899999999999999999999999987655433222211 11111 14 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEee-CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 928 (1135)
|...+|+|+ ||.|++|.+.+|.|++.|. +|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999997 7999999999999 788888999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC-cEEEEE-ECCcEEEEeccCCc
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
...|++||.++++++.||+|++|+.++.+++...... +. ..+|..+..-|.+ ..++++ ..++|.|.++.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~---d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GT---DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CC---cccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 9999999999999999999999999998855432111 11 1567777776654 355555 57889999999999
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
++.+..+.-..+...+.++||.|.++++.++|+.++-|.+.+|.+-..+. .|...|+.++-+| ..+.|
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-----------VhEkdvIGl~HHP-HqNll 494 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-----------VHEKDVIGLTHHP-HQNLL 494 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-----------cccccccccccCc-ccchh
Confidence 99988776667778889999999999999999999999999998877665 5567788888889 77899
Q ss_pred EEEecCCcEEEEe
Q 001157 1087 ALGMSDGAVHVVE 1099 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~ 1099 (1135)
|+-++||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.9e-31 Score=258.69 Aligned_cols=279 Identities=16% Similarity=0.264 Sum_probs=229.5
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
....|.|+.+. ...+++|..|++|+|||... -.... .+.+ | .+.|.|+.|
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~----------------------~~c~~-~L~G--H-tGSVLCLqy-- 245 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS----------------------LECLK-ILTG--H-TGSVLCLQY-- 245 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc----------------------HHHHH-hhhc--C-CCcEEeeec--
Confidence 44568888774 44599999999999997532 22222 2444 8 999999988
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce---EeEeecCccCc
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNR 926 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~ 926 (1135)
|.+.+++|+ |.+|+|||+++++++.++-+|...|..+.|+. .++++++.|.++.+||+..-. +...+.||...
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 667999998 99999999999999999999999999999986 599999999999999998653 44568999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cC
Q 001157 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL 1004 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~ 1004 (1135)
|..+.| |.++++|++.|.+|++|++.+++ +++.+.||. .+|.++.+ .|+++++ ++|.+|++||+ .+
T Consensus 323 VNvVdf--d~kyIVsASgDRTikvW~~st~e-----fvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 323 VNVVDF--DDKYIVSASGDRTIKVWSTSTCE-----FVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred eeeecc--ccceEEEecCCceEEEEecccee-----eehhhhccc---ccceehhc--cCeEEEecCCCceEEEEecccc
Confidence 999999 46799999999999999999988 788889988 45555544 5777777 57999999999 78
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
.+++.+ .||..-|.++.| |.+.+++|+.||.|+|||+.++....... ..+.......|++.|..+.| |..
T Consensus 391 ~cLRvL---eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~--~~~Cl~~lv~hsgRVFrLQF---D~f 460 (499)
T KOG0281|consen 391 ACLRVL---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA--STLCLRTLVEHSGRVFRLQF---DEF 460 (499)
T ss_pred HHHHHH---hchHHhhhheee--cCceeeeccccceEEEEecccccCCcccc--cchHHHhhhhccceeEEEee---cce
Confidence 887776 567999999999 67789999999999999999886553322 12333445688899999999 568
Q ss_pred EEEEEecCCcEEEEecCCCc
Q 001157 1085 QIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1085 ~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
.|++++.|.+|-+||.-++.
T Consensus 461 qIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEEeccCCCeEEEEEcCCCC
Confidence 99999999999999998755
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.8e-31 Score=248.44 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=251.5
Q ss_pred CCCCeeEEEeec---CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 345 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 345 h~~~V~~~~fsp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
|..+|..++||| +| ++|++++.||.-.+-+-++|.-+.+ +.||++.|.+...+.+..
T Consensus 13 htrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~na~ 72 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKNAT 72 (334)
T ss_pred CCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCchhh
Confidence 778999999986 77 6899999999999988888887765 789999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eEEEecCCCCCe
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPV 500 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~h~~~v 500 (1135)
+.|+++.|-+.++||.-+|..+. .| .|..-|.+++|+.|.+ +|+||+.++.++|+|++..+ +...+.+|.+.|
T Consensus 73 ~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 99999999999999999998776 44 4888999999999999 89999999999999998744 566889999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..+.|.... +.+++.+.|++||+||.+++..+..+.. ...|+++.++++|++|.++. .+.|.+||..+..++
T Consensus 147 r~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 147 RTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGLL 218 (334)
T ss_pred eeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccccccce
Confidence 999998655 7899999999999999999998887764 45799999999999998874 456999999999999
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE-eCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
+.+.... .|.+.+++|+...+++|++|..++.||..+++.+... ++| ..+|.|+.|+|+|...++|+.||+|++|
T Consensus 219 Ks~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 219 KSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred eeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCceEEEE
Confidence 9888765 5888999999999999999999999999999998886 444 5589999999999999999999999999
Q ss_pred ECCCc
Q 001157 660 ANSDG 664 (1135)
Q Consensus 660 ~~~~~ 664 (1135)
....+
T Consensus 295 Qt~~~ 299 (334)
T KOG0278|consen 295 QTTPG 299 (334)
T ss_pred EecCC
Confidence 98766
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.8e-29 Score=308.15 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=237.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
|.+.|++++|+|+|+ ++|+|+.|+.|+||++.+...... . ...+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 788999999999998 789999999999999864211000 0 00000012 2346799999987 57899
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6789999999999997 667 8999999999999999999999888754 67999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-----
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1135)
+.|++. ++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 999643 45899999999999999998765 455777899999999997 7888988874 78899999974
Q ss_pred -CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe-----------CCCCCCCcCeEEEecCC
Q 001157 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~ 644 (1135)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+......+.... ...+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888876 78999999999999999999999999987665443322 11223458999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001157 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~ 661 (1135)
..|++|+.+|.|++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999985
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9e-30 Score=236.43 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=220.5
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.++..|.++|..+.|+-||+|.++++.|.+|++|+...+..++ +..+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3477899999999999999999999999999999999998887 7889999999999999999 6999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
||+.+|+.++.|++|.+.|+.++|+... ..+++|+.|.++++||-++.. +++.+......|.++..+ +..++++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997654 899999999999999987644 455666666788888775 4577777
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ||+++.||++.|.....+-++ +|++++|+++++..++++.|+++++.|-.+|+++....+|.....-..++
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 64 889999999999988777776 89999999999999999999999999999999999999887655555677
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCc
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++.....+++|+.||.|.+||+.+.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 8888889999999999999999877
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1e-28 Score=270.91 Aligned_cols=247 Identities=23% Similarity=0.410 Sum_probs=221.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.++|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876544 5678999999999999998 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+..|...+.++.|++.+ .++++++.|+.|++||+++.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 99988888999999999999998863 78888888999999999988888888888889999999999888888753
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+.+++.+..+..+. ..+.+++|+++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcCC
Confidence 67899999999998888887765 89999999999999999999999999999988888776553 37899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001157 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.++++++.+|.+++|++.++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=8.6e-31 Score=245.19 Aligned_cols=299 Identities=17% Similarity=0.229 Sum_probs=253.8
Q ss_pred cCCCCCCCceEEEEEe---CCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC
Q 001157 766 LPDSIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1135)
+..++|..+|..++|| |+|-.|++++.|+.- .+-+-++|.-+.. +.+ | .+.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~p----------------------mlr~g~tgdwigt-feg--h-kga 61 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKP----------------------MLRNGDTGDWIGT-FEG--H-KGA 61 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCc----------------------hhccCCCCCcEEe-eec--c-Ccc
Confidence 3346799999999998 589999999988643 3335556655543 344 8 999
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-EeEee
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKL 920 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l 920 (1135)
|++.++..+..+.|+++ |-+-++||.-+|..++.|. |..-|.+++|+. |.++|++|+.+.-++|||++.-+ +...+
T Consensus 62 vw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 62 VWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEI 139 (334)
T ss_pred eeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhh
Confidence 99999999999999998 8899999999999999998 899999999999 89999999999999999998654 56678
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
.+|.+.|..+.|....+.++|.+.|++||+||..++...+..... .+|+++..++||++|.++..+.|..|
T Consensus 140 ~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEe
Confidence 999999999999999999999999999999999999865543322 57899999999999999999999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
|. +.+.++.+.. ...|.+..++|+...+++|++|+.++.||..+|+.+..+ ..+|-+.|.++.|+
T Consensus 211 daksf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~----------nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 211 DAKSFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY----------NKGHFGPVHCVRFS 276 (334)
T ss_pred ccccccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeec----------ccCCCCceEEEEEC
Confidence 99 7777777654 568999999999999999999999999999999988764 24788999999999
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCc--cccCCCCCCCCC
Q 001157 1080 PSEPNQIALGMSDGAVHVVEPSDAE--LKWGGTPSQDNG 1116 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW~~~~~~--~~~~~~~~~~~~ 1116 (1135)
| ||...++|+.||+|+||.+.-++ ..|.--.|-+.+
T Consensus 277 P-dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 277 P-DGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred C-CCceeeccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 9 88999999999999999997666 345444444433
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.3e-29 Score=306.52 Aligned_cols=326 Identities=12% Similarity=0.127 Sum_probs=243.8
Q ss_pred cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccC
Q 001157 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1135)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
+|-.++|+............- ....|...|.+++|+|+|+++++++.|+.|++|++..... .+..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~--~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~----------- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQG--DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRD----------- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccc--cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccc-----------
Confidence 355666766643221111100 1133788999999999999999999999999998743110 0000
Q ss_pred CCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe
Q 001157 824 PSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~ 901 (1135)
.......+. + ...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+
T Consensus 522 --~~~~~~~~~---~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 522 --IHYPVVELA---S-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred --cccceEEec---c-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 000000011 2 56789999987 578999998 999999999999999999999999999999975788999999
Q ss_pred CCccEEEEEcccceEeEeecCccCceEEEEEc-CCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeE
Q 001157 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS-PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1135)
Q Consensus 902 ~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s-~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1135)
.||.|++||+.+++.+..+..| ..|.++.|+ ++|.+|++|+.|+.|++||+.+.+. .+....+|. ..|..+
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v 667 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYV 667 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEE
Confidence 9999999999999988888765 679999995 5789999999999999999987542 223334555 578999
Q ss_pred EECCCCcEEEE-EECCcEEEEeccCCc----ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 981 QFHNDQTHLLV-VHESQISVYDSKLEC----SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 981 ~fspdg~~l~~-~~d~~i~vwd~~~~~----~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
.|. ++.+|++ +.|+.|++||+.... ...+....+|...+..++|++++.+|++|+.||.|++|+......+..+
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 997 6677777 679999999993210 1112223567899999999999999999999999999998876554333
Q ss_pred CCC--cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1056 GPS--AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1056 ~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
... ...+......|...|.+++|+| ++.+|++|+.||.|++|++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 211 1111111235667899999999 8899999999999999997
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=224.33 Aligned_cols=310 Identities=16% Similarity=0.245 Sum_probs=243.5
Q ss_pred eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+++.++.....|.+++|+|.|. +.|+|+..++.+|..+..-..++.. .+.....+.......+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 35677777888999999999998 8899999999999876432222110 000000011111224579999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC--CCCceeeeeEeecCCCCeeEEEEecC---CCceEEEEEc-CCCcEEEEEcCCCeeE
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~ 490 (1135)
||+|.+||+|+.|.+|++.-.+ +.+......++.-|.+.|..++|-.+ +.. +|++++ .|+.|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999987654 43444455578889999999999754 222 566654 6889999999999999
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+.+|.+.|.++- .-+|.++++|+.|.+|++||++-..++..+.. +...|.+++..|.|++|+++-.
T Consensus 177 ~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 99999999999884 12348999999999999999998888775543 2358999999999999999864
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCCCCCcCeEE
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~ 639 (1135)
|....+||++.+++++.|..|.. .|+|+.|+|...|+++++.|..|++-|+... -++..+..| ...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEE
Confidence 67799999999999999999988 8999999999999999999999999998742 123333333 44678899
Q ss_pred EecCCCEEEEEeCCCcEEEEECC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
|+|..--+++.+.|.++.+|.+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99998889999999999999753
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4e-30 Score=258.43 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=252.6
Q ss_pred CCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCe
Q 001157 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 333 d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+..|......+. |.++|..+.|-++.. .|++|+.|..|++|++..++.-.. ..+.|..++|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 334555556666 899999999999976 589999999999999987762211 1267888999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
+.+.|.++++.+++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++||+..+.+.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987666 7889999999999998776 59999999999999999999888
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
++. ....+..|+..+ ..+++|-.|++|++||.++.......+.++ .|+++..+++|..+++++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 334456666542 678999999999999999999988888766 9999999999999999864 778999
Q ss_pred EeCCCCceeEEeeccc---CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
.|+++......+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..|+
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999888876542 2247789999999999999999999999999999999998776655799999999999999
Q ss_pred EEeCCCcEEEE
Q 001157 649 VTTSDNGIKIL 659 (1135)
Q Consensus 649 ~~~~dg~v~iw 659 (1135)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.2e-29 Score=246.84 Aligned_cols=291 Identities=18% Similarity=0.332 Sum_probs=241.6
Q ss_pred CcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 334 ~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+.++..-+.|.+.|.++... ++ .+.+|++||.++|||... +.... +.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~G-k~~~~-------------------~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKG-KSIKT-------------------IVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCC-ceEEE-------------------EecCCcceee
Confidence 3556677777899999999998 44 577999999999999874 43332 6799999998
Q ss_pred EEEcCCCC---EEEEEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC----
Q 001157 414 CVWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---- 485 (1135)
Q Consensus 414 v~~spdg~---~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~---- 485 (1135)
++|--... .+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|.||+..
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 88854333 6999999999999999887642 22223449999999999999999 89999999999999932
Q ss_pred ---------------------CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeE
Q 001157 486 ---------------------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 486 ---------------------~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 544 (1135)
++.++-++.||..+|.++.|.+. ..++++|.|.+|+.||+.+++....+.. ...+
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 12345678899999999999873 6899999999999999999988877664 4578
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc---eeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 001157 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.++.++|..++|++++. +..|++||.+++. ...+|.+|.+ .|.++.|+|... .|++++.|+++++||+++.
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999875 7789999998754 4567889988 999999999775 5677999999999999988
Q ss_pred e-eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 621 N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 621 ~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+ ++..+..|.. .|.++.|+. +..+++|+.|.+|+|+..
T Consensus 379 k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 8888887744 799999975 668999999999999864
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=253.85 Aligned_cols=284 Identities=18% Similarity=0.257 Sum_probs=240.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
..+.|.+++|||...+=+|+.+ .-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3568999999996654344433 35899999887665542 344667899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|.+.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644455 67799999999999998876 899999999999999999887778999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee-EEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-RTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~ 583 (1135)
++|..+ ..++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|... ..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998754 7999999999999999998855554455889999999999999999986 567999999965544 444
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
..|.. .|+|+++..++..|++++-|+.|++||+.+.+.+..+... ++|.+++.+|+++.++.|..+|.+.+-+..
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehhh
Confidence 54666 9999999999999999999999999999999999988765 368999999999999999999998776443
No 72
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-26 Score=242.47 Aligned_cols=667 Identities=13% Similarity=0.172 Sum_probs=362.2
Q ss_pred cccccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--e-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--L-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
++.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-. + ..-..+.+..-.|.++.|+|.... +++++ .-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 4788999999999999 677999999999999999985422 1 111123334457899999998774 45554 4789
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCC-eEEEEEEcCCCCEE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~-~v~~~~~s~~~~~l 556 (1135)
++|||+.+++.+..+.+|...|.++.|+. ||.+|++.+.|+.|+|||.+.... +....+|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999965 559999999999999999987544 445555554 44567787776788
Q ss_pred EEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEE--EeCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTT--VDADGGL 632 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~ 632 (1135)
++.+.+......+++||.+. +..+.++.-.....|..--|.||.+.++.++ .+.++.++.+...++... +.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 87776665677899999875 4566666554444566667899988877655 778888888876543211 111000
Q ss_pred CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc----------chheeeccC-----cccccCCCCCCCCcCCCCccccCC
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRMLEG-----RAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~----------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
......++-|...+-+..+. ..+++.+... .+..+.+.. ..+....+ . .-..+.
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~----~-----ageWln 377 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGC----T-----AGEWLN 377 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCc----C-----ccceec
Confidence 00112222222211111111 1111111110 000000000 00000000 0 000000
Q ss_pred CCCccccccCCCCCCCCC------CCC---CcccCccccCCC---------------ccccc--Cccccccccccccccc
Q 001157 698 PASNVSAAIAPTLERPDR------GPP---AVSISSLGTIDG---------------SRLVD--VKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~~~i~~w~ 751 (1135)
....+-.-..+.|..... ..| ......|...-. ...+| ....+. ....++-.+
T Consensus 378 G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~ 456 (1012)
T KOG1445|consen 378 GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELD 456 (1012)
T ss_pred CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC-cchhhhhhc
Confidence 000000000111110000 000 000000000000 00011 111111 001111111
Q ss_pred cCcccCCCceeEE-Ec--CCCCCCCceEEEEEeCCcceeeeecc----c--ceeEEEeecccCCCC----C--Cccccc-
Q 001157 752 IPDISDPSQIKAL-RL--PDSIAASKVVRLIYTNSGLSLLALAS----N--AVHKLWKWQRTERNP----S--GKATAN- 815 (1135)
Q Consensus 752 ~~~~~~~~~~~~~-~~--~~~~~~~~i~~~~~s~~g~~l~~~~~----d--g~i~iw~~~~~~~~~----~--~~~~~~- 815 (1135)
............- .- ...+..+.+..+ +|....++--.+ + .+..+..-..++..| . |..+..
T Consensus 457 ~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat 534 (1012)
T KOG1445|consen 457 YRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISAT 534 (1012)
T ss_pred ccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccc
Confidence 1000000000000 00 000000000000 000000000000 0 000000000000000 0 000000
Q ss_pred ------c----------cceeccCCCCCccccC-----CCCCCCCCCCeeEEEeecCCCEEEEE---eCCeEEEEeCCC-
Q 001157 816 ------V----------APQLWQPPSGTLMTND-----INESKPTEESAACIALSKNDSYVMSA---SGGKVSLFNMMT- 870 (1135)
Q Consensus 816 ------~----------~~~~~~~~~~~~~~~~-----~~~~~h~~~~v~~l~~s~dg~~la~~---sdg~i~iwd~~~- 870 (1135)
. .+.-|.-..|...... +++.+. .-+-.+=.|..+.+++|+- +.|.|.||++..
T Consensus 535 ~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~P 613 (1012)
T KOG1445|consen 535 NRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEP 613 (1012)
T ss_pred ccccccccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEEcCCC
Confidence 0 0000111111111000 000000 1111223355566777654 378999999975
Q ss_pred ceEEEE-eeC--CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-------eEeEeecCccCceEEEEEcCCC-CeE
Q 001157 871 FKVMTM-FMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPTL-NAL 939 (1135)
Q Consensus 871 ~~~~~~-~~~--~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d~-~~l 939 (1135)
|++--. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ ..-..+.+|...|+++.|+|-. ..|
T Consensus 614 GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvL 693 (1012)
T KOG1445|consen 614 GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVL 693 (1012)
T ss_pred CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHh
Confidence 332111 111 34569999999999999999999999999998764 3445689999999999999954 689
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCC
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPA 1018 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~ 1018 (1135)
++++.|.+|++||+.+++. ...+.||. +.|..++|||||+.+++ +.||+|+||+.................
T Consensus 694 a~asyd~Ti~lWDl~~~~~-----~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt 765 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKL-----YSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT 765 (1012)
T ss_pred hhhhccceeeeeehhhhhh-----hheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC
Confidence 9999999999999999773 44566777 79999999999999999 899999999994444343333322244
Q ss_pred CeEEEEEccCCCEEEEEecCC----cEEEEecCCCc--eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC
Q 001157 1019 PISSAIYSCDGLLVYAGFCDG----AIGVFDAETLR--FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD 1092 (1135)
Q Consensus 1019 ~i~~~~~s~dg~~l~s~~~dg----~V~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D 1092 (1135)
+-..|.|.-||+++++.+.|. .|.+||..+.. .+....... .-.++---|.++.+-++++|-.|
T Consensus 766 RgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv----------aps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 766 RGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV----------APSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred cceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc----------cCccccccccCCCceEEEecCCC
Confidence 555678889999998877664 58899987643 333322110 01122223555566788899999
Q ss_pred CcEEEEecCCCcccc
Q 001157 1093 GAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1093 g~i~lW~~~~~~~~~ 1107 (1135)
..|.+|++.-.++.+
T Consensus 836 ~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 836 RFVNMYEVIYESPYL 850 (1012)
T ss_pred ceEEEEEecCCCcee
Confidence 999999997655433
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.4e-28 Score=276.49 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=251.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
++..|.+++.+|||. .+|+|+ .|+.++||+...--.- ...++.. .+........|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689999 8999999997532100 0011111 12222235679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC----------C-----CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 12345667889999999999999999 9999999999999999999
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEee
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
+.+..+++|.+.|..+.|.|.+ ++|++-+.|++|++|++.+-+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998876 99999999999999997765555555443 336889999999999998766
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC-------------CC----EEEEEecCCeEEEEECCCCeeeE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-------------RN----RFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
-+.+...+.|.+-.+.+.-..|-||.. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 555677899999888888899999998 9999999982 11 46678999999999998888877
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+..-.. ..|..++|+|||..|+.++.||+|.++..+..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6653332 37999999999999999999999999998764
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=226.34 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=239.6
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.|+.+++-+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||.+.|.|++.+.+.+++
T Consensus 8 GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCccee
Confidence 3899999999999998 899999999999999999998875 78999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-----CCCcEEEEEcC-------CCeeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVV-------AGRKQY 491 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~~~~ 491 (1135)
++|+.|.++++||+++|+++... ....+|..+.|+.+|. +++.+. ..+.|.++|++ ..++..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 99999999999999999887633 2467899999999998 444433 45689999998 455678
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
.+..+...++.+-|.|.+ ++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |.+-+
T Consensus 142 kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dttak 215 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTAK 215 (327)
T ss_pred EecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccce
Confidence 888899999999999877 899999999999999999976544 55778889999999999999999974 77899
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe--EE------------EEECCCCeeeEEEeCCCCCCCcC
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+||..+-..++++.... ++++.+++|....++.|+.... |. +|++-..+.+..+++| .++|+
T Consensus 216 l~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPIN 291 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPIN 291 (327)
T ss_pred eeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcc
Confidence 99999999999998765 8999999999888888653222 22 2222222344555555 56999
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++|+|+|+..++|+.||.||+......
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eeEECCCCcccccCCCCceEEEEEeccc
Confidence 9999999999999999999999876543
No 75
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=6e-27 Score=265.03 Aligned_cols=303 Identities=14% Similarity=0.113 Sum_probs=229.9
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la~ 425 (1135)
..|+...+++|+.. +++++.+..+..|+...+..+. +....+........+.+|.+.|.+++|+| ++++||+
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 46777778888764 4566667778888876553221 11111111112234789999999999999 8999999
Q ss_pred EeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 426 AFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999999987532 1233467899999999999998644 799999999999999999999999999999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCe-EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-e
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-I 579 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~ 579 (1135)
+++|+|++ .+|++++.|++|++||+++++....+..|.+. +..+.|.+++..+++++.++..++.|++||+++.. +
T Consensus 173 sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 173 SLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred EEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99998865 89999999999999999998888888777653 45778999999998887665568899999998754 4
Q ss_pred eEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
+.....+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|....=+ ..-...|+
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~~dv--~~~Ei~r~ 327 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWSLDT--RKCEIARF 327 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccccccc--cceeeeEE
Confidence 4444444443566678999999999887 5999999999999887776543 233678888988543211 12224466
Q ss_pred EECC
Q 001157 659 LANS 662 (1135)
Q Consensus 659 w~~~ 662 (1135)
|.+.
T Consensus 328 ~~l~ 331 (493)
T PTZ00421 328 YALT 331 (493)
T ss_pred EEec
Confidence 6554
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=7.3e-27 Score=221.55 Aligned_cols=235 Identities=14% Similarity=0.202 Sum_probs=204.8
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||+.+++.+.++.+|.+|++|+.|.++.+|-...|+.+. ++.||.+.|+|++.+-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999988888776 8899999999999999999 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-----CCeEEEEeCC-------CCCceEEecCCCCeEEEEEEc
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1135)
|+++|+++..++ ...+|..+.|++.+ ++++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999986 67889999998876 55555443 3679999988 445567788888999999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCcee-EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|-+++|++|.. +|.|..||.++|... .+-..|.. .|+.+++++|..++++++.|.+-++||..+.+.+.++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999964 788999999998554 44455655 8999999999999999999999999999999999988754
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCC
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 378999999987777777643
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-26 Score=225.70 Aligned_cols=281 Identities=14% Similarity=0.232 Sum_probs=233.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++-.|..+.|......++.
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEEE
Confidence 56899999999998 567788899999999999988764 4456677889999888888877
Q ss_pred EeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 426 AFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 426 ~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++. |.+|+..++.+.+.++ .|.||...|++++.+|-+. .+++++.|++|++||++..++...+.....+ .+
T Consensus 74 sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred ccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 777 8899999999998887 8899999999999999998 8999999999999999988887766544444 45
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecC---CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
+|.|.+ -++|++...+.|++||++... +...+.. .....+.+.|||||++++.+.. .+.+++.|.-+|.
T Consensus 147 AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 147 AFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGT 220 (311)
T ss_pred eECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCc
Confidence 666654 788888888899999998752 3333333 3558899999999999998863 7789999999999
Q ss_pred eeEEeecccCCc--eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 579 IKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 579 ~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
...++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|.-.++++++ ..+
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~l 297 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SNL 297 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ceE
Confidence 999998876532 245789999999999999999999999999999999875 344789999999877777664 477
Q ss_pred EEEECC
Q 001157 657 KILANS 662 (1135)
Q Consensus 657 ~iw~~~ 662 (1135)
.+|-..
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 788654
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.8e-28 Score=266.65 Aligned_cols=300 Identities=16% Similarity=0.201 Sum_probs=218.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC---CCC
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 421 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~ 421 (1135)
|.+.|+++.||+||+ +||+|+.|+.|+||.+...+.... ..-+... .... +. -.+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~--~~~~---~~-~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSC--MYFE---YN-ANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccch--hhhh---hh-hccccCcccccccccccc
Confidence 899999999999998 899999999999999976443211 0000000 0000 00 000011111111 011
Q ss_pred --EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 422 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 422 --~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
..-.+.....+.+-+..-.=.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....+++.|. |...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11112222222221111111113444788999999999999876 79999999999999999999999996 9999
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|+|++|+|..| +++++|+.||.||||++...+...-.. -..-|++++|.|||++.+.|+. +|.+++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999876 899999999999999997655444333 3478999999999999999987 78899999988777
Q ss_pred eEEeeccc-------CCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 580 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~-------~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
...+.-+. ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 66554321 1269999999754 458888899999999999999999998766555556789999999999999
Q ss_pred CCCcEEEEECCCc
Q 001157 652 SDNGIKILANSDG 664 (1135)
Q Consensus 652 ~dg~v~iw~~~~~ 664 (1135)
.|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998543
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=231.50 Aligned_cols=312 Identities=17% Similarity=0.214 Sum_probs=244.5
Q ss_pred eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccc-cccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++......|++++.+.+|||||. ++|+|+.|-.|+|.|++..-... ...+..-+.... .+.. ..+-.|.++|+++.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hPvI-RTlYDH~devn~l~ 179 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HPVI-RTLYDHVDEVNDLD 179 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-CceE-eehhhccCccccee
Confidence 34445556999999999999997 89999999999999987311000 000000011111 1111 23668999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe--
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 493 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-- 493 (1135)
|+|....|++|+.|++|+++|.......+..+.+. ...+|.++.|+|.|. +|+.|.+-.++++||+++-++...-
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCc
Confidence 99999999999999999999998755444333332 456899999999999 8999999999999999998876543
Q ss_pred -cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-CC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 494 -EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-AP-GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 -~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..|.+.|+++.+++.+ .+.+++|.||.|++||--+.+++.++. .| +..|.+..|..+|+++++.|. |..++
T Consensus 257 d~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVK 330 (430)
T ss_pred ccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceee
Confidence 3699999999998765 899999999999999988888877654 34 448999999999999999874 88999
Q ss_pred EEeCCCCceeEEeecccCC----ceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 571 EWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
+|.+.+++++..+.+.... --+...|+....+++.-. ..+.+.-||.++...+..+.. +|.+.+..+.-+|.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 9999999999999875211 122355788888888765 567899999999887766653 4556899999999999
Q ss_pred EEEEEeCCCcEEEEEC
Q 001157 646 LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~ 661 (1135)
-+++++.|...|+|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 9999999999999963
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.3e-27 Score=220.92 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=235.2
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEE
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~ 525 (1135)
++.+|...|.+++|+.+|. .|++|+.|+++.+|++...+... ..++|.+.|-.++|+|... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 89999999999999998776554 3568999999999998765 79999999999999
Q ss_pred EeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEE
Q 001157 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 605 (1135)
||++.+++........+.+ -++|+|+|++++++. ++..|...|.++.+.+...+... .+.-++|+-++..++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~----kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGN----KDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEec----CcccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988777666555 568999999999986 36679999999888777665543 4677889988888888
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCC
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
....|.|.|......+++..++.|.. ...|+.|+|+|+++|+|+.|..+.+||++.- -+.+.+.
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is------------- 228 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS------------- 228 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheeec-------------
Confidence 87889999999999999999998854 6788999999999999999999999998643 1111110
Q ss_pred CcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEE
Q 001157 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
.+ ..+|..
T Consensus 229 -----------------------------------------------------------------------Rl-dwpVRT 236 (313)
T KOG1407|consen 229 -----------------------------------------------------------------------RL-DWPVRT 236 (313)
T ss_pred -----------------------------------------------------------------------cc-cCceEE
Confidence 03 778999
Q ss_pred EEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc
Q 001157 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1135)
Q Consensus 846 l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg 904 (1135)
+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+| ...+||.+++|.
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence 99999999999999 8899999999999999888 788999999999 889999988763
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=218.80 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=236.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
|...|.+++|+.+|. -||+|+.|+++.+|++...+.+... ...+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcce
Confidence 677899999999998 6899999999999999887544321 2568999999999998 56799
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++++.|.+|++||+..+++.... .. .+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ....++-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877633 22 23334679999999 89999999999999999888776654 55668888
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+|+.++ ++++.....|+|.|-.+...+.+..+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 998544 67777777899999999999999999999999999999999999999986 778999999998888999
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
..+.- +|+.++|+-+|++|+++++|..|-|=++++|..+..++..+ +...++|+|...+||-+++|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999998654 56899999999999988765
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-27 Score=224.41 Aligned_cols=285 Identities=16% Similarity=0.253 Sum_probs=229.0
Q ss_pred eeEEEeec--CCCeEEEEEe-----CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-C
Q 001157 349 VMSMDFHP--QQQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-G 420 (1135)
Q Consensus 349 V~~~~fsp--dg~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g 420 (1135)
=.++.||| +++..+|++. ..|.+.|-++..++.+.. +..+ .-.+.+..++|+++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 36788998 4443334332 357888888875444431 1111 24567999999995 5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCe
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
+.+++++.||+++|||..... .++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.++++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 588889999999999954433 345578899999999999997766 67888999999999999999999999999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE-EEeeCCCCCceEEEEeCCCC-c
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEG-A 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~-~ 578 (1135)
...+|+|... ++++++|.|+++++||++.......+..|...+.++.|+.-...++ +++ .|+.|+.||++.- .
T Consensus 151 y~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhccc
Confidence 9999999754 8999999999999999999888888999999999999998666555 554 4888999999864 4
Q ss_pred eeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCc
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNG 655 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 655 (1135)
++..+.+|.- .|+.+.|||.. ..|++++.|-+++|||...+ ..+.+...|.. -+..+.|++ ++.++|+.+-|+.
T Consensus 226 pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccc
Confidence 6788888877 89999999976 57788999999999998854 34555555533 577888888 7789999999999
Q ss_pred EEEEEC
Q 001157 656 IKILAN 661 (1135)
Q Consensus 656 v~iw~~ 661 (1135)
+.||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999984
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.1e-27 Score=265.11 Aligned_cols=283 Identities=17% Similarity=0.282 Sum_probs=246.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+...+.+..|. ++ .+.+|+.|++|.+||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 46689999999 54 478899999999999999887653 2679999999999988899999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.|.++++||+.+|++.. .+.+|...|.++...+. ++++|+.|.+|++|++.++..+..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998877 88899999999988543 688999999999999999999999999999999998
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1135)
.+ +.++++|+.|++|++||+.+++++..+.+|..+|.++.+.+. ..+++++. |+.|++||+++. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 379999999999999999999999999999999999988776 88999886 678999999999 999999
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+|.. .+..+ ...+++|++++.|++|++||..+++++.++... +...|.++++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccc--ccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99887 55444 445789999999999999999999999999874 33456666665 46788999999999999999
Q ss_pred cchheeec
Q 001157 664 GVRLLRML 671 (1135)
Q Consensus 664 ~~~~~~~~ 671 (1135)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 8 444433
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.9e-27 Score=243.74 Aligned_cols=285 Identities=16% Similarity=0.253 Sum_probs=234.6
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+.|.+++|+|...+=.+.+..-.+.+|+... ......... . ...++++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhhHHh---h-ccceeEEEeec
Confidence 557899999999766555555555677776532 222221122 2 67899999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
||+++|+|+ .|.|+|||+.+...++.+.+|..+|..+.|+|+++..+++|++|+.+++||+.+......+.+|.+.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877888999999999999999999999999999999999999999987789999999999
Q ss_pred EEEcCCC-CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEecc-CCcc
Q 001157 930 LAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS 1007 (1135)
Q Consensus 930 l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~-~~~~ 1007 (1135)
.+|+|-. .+++|||.||+|++||+.... ........| .+|..+.|-|.|..+++++...|+|||+. +...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 9999975 479999999999999998753 122332223 57999999999999999999999999994 4443
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
.... ..|...|+|+++..|++.|++|+-|+.|++||+.+.+.+..+. -++.+++++-+| |+..++
T Consensus 231 l~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------~~~pvLsiavs~-dd~t~v 295 (487)
T KOG0310|consen 231 LTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------YPGPVLSIAVSP-DDQTVV 295 (487)
T ss_pred hhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------------cccceeeEEecC-CCceEE
Confidence 3322 2379999999999999999999999999999999998888774 337899999999 778999
Q ss_pred EEecCCcEEEEecCCCc
Q 001157 1088 LGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 s~~~Dg~i~lW~~~~~~ 1104 (1135)
.|..||.+.+=+....+
T Consensus 296 iGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVKK 312 (487)
T ss_pred Eecccceeeeehhhccc
Confidence 99999998877554444
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6e-27 Score=252.85 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=239.9
Q ss_pred eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC
Q 001157 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~ 428 (1135)
.+-++||..+ ++|+|. ...|++|+..+++.... ..-+.+.|+++.|+++|++||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 4557888655 567764 45899999998874431 1223788999999999999999999
Q ss_pred CCeEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-ecCCCCCeEEEEec
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-l~~h~~~v~~l~~~ 506 (1135)
+|.|.|||....+.++ .+.+ |...|-+++|+ +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 6667 99999999998 44 789999999999999998776655 88999999999998
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+++ .++++|+.|+.+.|||....+.+..+..|...|.+++|+|-. ..||+|+. ..|+.|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 866 899999999999999998889999999999999999999965 45666654 5689999999999999988876
Q ss_pred ccCCceeEEEEeCCCCEEEE--EecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.. .|..+.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 55 6999999999987777 34778999999999999999987755 799999999999999999999999999866
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.5e-26 Score=223.63 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=221.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc-cccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.++.|.+++|||....+++.||-||+|++|+++.. ..... ....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceE
Confidence 35689999999966668889999999999999873 33221 245699999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+....-.|+|||.|++|+.||.+...++.++. -...+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 56689999999999876554489999999999999999999998886 55677777
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC--ce
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1135)
..-. .+++.+..++.|.+|+++++..... .. .-.-.++|++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 5788999999999999976554332 11 12347889999998888888775 667777777665 55
Q ss_pred eEEeecccCC--------ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 580 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
-.+|++|... .|++++|+|....|+++|.||++.+||-+....+.+.+.+. .+|++.+|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 5677777631 36789999999999999999999999998888777766554 4899999999999887653
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=241.26 Aligned_cols=297 Identities=19% Similarity=0.256 Sum_probs=226.0
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|...|.++++.|.|.++++|+-|..|++||+....... .-.....+.. ...|.++.||+
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P~E---~h~i~sl~ys~ 224 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQPCE---THQINSLQYSV 224 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCccc---ccccceeeecC
Confidence 77889999999999999999999999999986532100 0011112222 44799999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEe------------eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-E
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMF------------MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-V 916 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~------------~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~ 916 (1135)
.|..|++.+ ....+|+|-......... +||...++|.+|+|.....+++++.||+++|||+..-+ .
T Consensus 225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 999888887 678999997755443332 47888999999999777889999999999999998643 2
Q ss_pred eEeec-----CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 917 KTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 917 ~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
+.+++ +..-.++.++|++||++||+|+.||+|.+|+..+........++ ..|. ....|+++.||+||++|++
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~-~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHL-PGQDITSISFSYDGNYLLS 381 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccC-CCCceeEEEeccccchhhh
Confidence 33332 23345899999999999999999999999998654433322222 2333 1147999999999999999
Q ss_pred -EECCcEEEEec-c-CCcccccCCCCCCCCCeEEEEEccCCCEEEEEe------cCCcEEEEecCCCceeeccCCCcccC
Q 001157 992 -VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGF------CDGAIGVFDAETLRFRCRIGPSAYIP 1062 (1135)
Q Consensus 992 -~~d~~i~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~------~dg~V~vwd~~~~~~~~~~~~~~~~~ 1062 (1135)
+.|+++++||+ + .+++..+... ....+-+.++||||.++|++|. ..|.+++||..+.+.+.++...
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 99999999999 3 3344443332 2245678899999999999985 3578999999999999888522
Q ss_pred ccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEE-ecCCCc
Q 001157 1063 TYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDAE 1104 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW-~~~~~~ 1104 (1135)
.+.|..+.|+| .=+.|.+|+.||+++++ |...++
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 47889999999 66788889999999874 554444
No 88
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-26 Score=230.42 Aligned_cols=282 Identities=20% Similarity=0.294 Sum_probs=234.8
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCC
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~ 529 (1135)
-|.+.|.++... ++ +|+||++||.+++|| ..|+.++.+.||.++|.+++|.-.+ ....|++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488889998887 55 899999999999999 6899999999999999988876443 22469999999999999988
Q ss_pred CCCceE----EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-------------------------CCcee
Q 001157 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1135)
Q Consensus 530 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 580 (1135)
.++... ...+|...|.+++..++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 766543 33489999999999999999999986 7789999931 23466
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
..+.+|.+ +|.++.|++ ...+++++.|.+|+.||+.++..+..+.... ...++.++|...+|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 77889888 999999998 6789999999999999999999998887643 579999999999999999999999999
Q ss_pred CCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc
Q 001157 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
..++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876610
Q ss_pred ccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccccee
Q 001157 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.+....
T Consensus 335 ---------------------------------s~v~~s----------------------------------------- 340 (423)
T KOG0313|consen 335 ---------------------------------SVVSQS----------------------------------------- 340 (423)
T ss_pred ---------------------------------ceeEEe-----------------------------------------
Confidence 000000
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCC-EEEEEe-CCeEEEEeCCCce-EEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
+.+ | ...|.++.++|... .|++|+ |+++++||+.+.+ ++..+.+|.+.|.++.|.. +.+|
T Consensus 341 ------------~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~I 403 (423)
T KOG0313|consen 341 ------------LIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLI 403 (423)
T ss_pred ------------eec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceE
Confidence 111 6 77888899998655 567777 9999999999877 8999999999999999984 6799
Q ss_pred EEEeCCccEEEEEc
Q 001157 898 AIGMEDSSVQIYNV 911 (1135)
Q Consensus 898 asg~~dg~v~iwd~ 911 (1135)
++|+.|.+|+|+..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.5e-27 Score=265.00 Aligned_cols=303 Identities=17% Similarity=0.256 Sum_probs=235.0
Q ss_pred CCCceEEEEEeCCcceeeeec--ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 771 AASKVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
++..|.++..+|+|..+++++ .||.+++|+...--. ....++..- ......+. .| .+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l-~k~l~~m~--~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENL-PKHLCTMD--DH-DGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhccc-chhheeec--cc-cCceeEEEE
Confidence 345689999999999999999 789999998643100 001112110 01111122 37 999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCC------------------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEE
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 909 (1135)
+|||++||+|+ |+.|.||+... .+....+.+|+..|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 67799998762 246788999999999999999 99999999999999999
Q ss_pred EcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
|..+.+.++++++|.+.|.++.|.|-|+|+||-+.|++|+||++.+....+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977644322 233333333333567899999999999
Q ss_pred EEE--EC---CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccC--------C-----C----EEEEEecCCcEEEEec
Q 001157 990 LVV--HE---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD--------G-----L----LVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 990 ~~~--~d---~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d--------g-----~----~l~s~~~dg~V~vwd~ 1046 (1135)
++. -+ .++.|.+- +-+.-..+ -||.++++++.|+|. | . .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~L---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDL---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeee---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 23 34666665 22222222 467999999999971 1 1 5789999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
...+++..+. +-....+..++|+| ||..|.++|-||+|.+..++..+
T Consensus 312 ~~~RPl~vi~----------~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIH----------NLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhh----------hhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 8888776553 12235788999999 88999999999999999997655
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.9e-27 Score=225.38 Aligned_cols=253 Identities=15% Similarity=0.273 Sum_probs=204.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC------------CC---ceeeeeEeecCCCCeeEEEEecCCCce
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TG---ELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~------------~~---~~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1135)
+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .--.+.++-.|...|+++.|+|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 667999999999999999999999999999999871 11 0012336778999999999999998
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCCCCe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~ 543 (1135)
.|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 89999999999999987654433222 245789999999977 89999999999999999998876633 446779
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec-ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 78899999999999998864 5555799999999999999999999999999999999
Q ss_pred eEEEeCCCCC---CCcCeEEEecCCCEEEEEeC-CCcEEEEECCCc
Q 001157 623 LTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~ 664 (1135)
+....+.+.. ..-+...|+....+++.-.. .+.+.-||..+.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9988765321 12234556665555554433 456777777665
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-25 Score=216.56 Aligned_cols=293 Identities=14% Similarity=0.280 Sum_probs=242.8
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
..+.|......|+++.|+.++ .++++++.|.++++||..++.....+..+...+..++|....+.++.++. ..|..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G--~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~t 81 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDG--LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDT 81 (311)
T ss_pred cccccccCCCceeEEEecCCC--CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCc
Confidence 344566667889999997755 89999999999999999999999999888888999999888787777654 35778
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
|+..++.+.+.++-|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+ -..+||.|+|-++|
T Consensus 82 IryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG----RPIAAFDPEGLIFA 156 (311)
T ss_pred eEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC----CcceeECCCCcEEE
Confidence 99999999999999999998 99999999999999999999999999999988888887553 36689999999999
Q ss_pred EEeCCCcEEEEECCCcc-hheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcccc
Q 001157 649 VTTSDNGIKILANSDGV-RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++...+.|++||++.-. ..+.+
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~t--------------------------------------------------------- 179 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTT--------------------------------------------------------- 179 (311)
T ss_pred EecCCCeEEEEEecccCCCCcee---------------------------------------------------------
Confidence 99988899999985430 00000
Q ss_pred CCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCC
Q 001157 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 807 (1135)
|..+. .
T Consensus 180 ----------------------------------------------------f~i~~-------~--------------- 185 (311)
T KOG1446|consen 180 ----------------------------------------------------FSITD-------N--------------- 185 (311)
T ss_pred ----------------------------------------------------EccCC-------C---------------
Confidence 00000 0
Q ss_pred CCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCe--
Q 001157 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA-- 884 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v-- 884 (1135)
. ..+.+.+.|||||++++.+. .+.+.+.|.-+|..+.++.++...-
T Consensus 186 ------------------------------~-~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 186 ------------------------------D-EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred ------------------------------C-ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 1 45567799999999988887 6789999999999999988776442
Q ss_pred -eEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC-ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 885 -TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 885 -~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
-..+|+| +++++.+|+.||+|.+|++++++.+..+.+ +.+++.++.|+|.-..+||+ +..+.+|=...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 5788999 999999999999999999999999999998 78999999999976666665 45688886664
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-26 Score=250.08 Aligned_cols=262 Identities=17% Similarity=0.288 Sum_probs=228.2
Q ss_pred ceeecCCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
.+|.|+...+....... +.+.|+++.|+++|+ +||+|..+|.|.|||..+.+.+.. +.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~ 257 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRG 257 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence 35666666666555555 489999999999998 799999999999999998877664 445
Q ss_pred -cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 407 -AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 -h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence 99999999997 88999999999999999998776543 3789999999999999999 89999999999999998
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEE--cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
...++..+..|.+.|.+++|+|... .+||+|+ .|++|++||..++..+.... .+..|.++.|++..+-|+++..
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG-- 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG-- 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--
Confidence 8889999999999999999999876 5888875 69999999999776665544 5679999999999988887654
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3466899999999999999999998 7999999999999999999999999998764
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6e-27 Score=220.54 Aligned_cols=270 Identities=11% Similarity=0.211 Sum_probs=216.6
Q ss_pred ecCCCCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccc
Q 001157 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 320 ~~~~~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
...+|+....-..+...-+....+.-.+.+..++||++....+++++.||+++|||+.....
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------ 95 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------ 95 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------
Confidence 34445443333333444556677778899999999998887888899999999999543221
Q ss_pred ccccccccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 400 QNALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
+...+++|+..|.++.|++ ++..+++++.|++|++|+...++.+. ++.||...|...+|+|.... +++++|.|++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 2234788999999999999 56678888999999999999887766 78999999999999998766 8999999999
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCC-EE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l 556 (1135)
+++||++..-.-..+..|...|.++.|+..+. ..++||+.|+.|+.||++..+. +..+.+|+-.|..++|||... .|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 99999986433344889999999999987654 8999999999999999998664 457888999999999999765 55
Q ss_pred EEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEEC
Q 001157 557 FSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 617 (1135)
++++. |-++++||...+. .+.+...|.. .+..+.|++ ++.++++++.|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 67765 7889999988554 4445555544 788888887 4578899999999999984
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.8e-26 Score=220.88 Aligned_cols=240 Identities=22% Similarity=0.273 Sum_probs=202.1
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc--EEEEEeCCccEEEEEcc
Q 001157 836 SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 836 ~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~ 912 (1135)
..| .+.++++|+ +|.++|+|+ |.+|+|||+.+.+.+..+..|.+.|+++.|.+ ... .|.+|++||.|.+|+..
T Consensus 40 ~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 348 999999998 689999999 99999999999999999999999999999998 443 78899999999999999
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
..+++..+++|.+.|+.|+.+|.+++-++.+.|+.++.||+-+|+.-. +..+. ...+.+.|+|.|.+++++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---v~~L~------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---VLNLK------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---eeccC------CcceeeEEcCCCCEEEEE
Confidence 999999999999999999999999999999999999999999887432 22222 123569999999999998
Q ss_pred ECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCC
Q 001157 993 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1071 (1135)
Q Consensus 993 ~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
....|-+|.+ +......... ..++.++.| -++..|++|..|+.|.+||.+++.+...+. +|..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-----------AH~~ 250 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN----PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL-----------AHEN 250 (362)
T ss_pred eccEEEEEecccHhHhhhhhc----cccceeeee-cCCceEEEecCCceEEEeccCCCccceeee-----------cchh
Confidence 8899999999 4444333322 345666666 356678899999999999999987777665 8888
Q ss_pred CcEEEe-eCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1072 HPLVIA-PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1072 ~~~~~~-~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+|-.+. |...++.+|++++.||.|+|||+....
T Consensus 251 RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 251 RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred heeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 999988 433367899999999999999998763
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.9e-27 Score=237.95 Aligned_cols=253 Identities=19% Similarity=0.263 Sum_probs=213.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|.+.|..+.|-++...|++|+.|..|++|++..++. ....++.|-.++|+++.|.++++ ++++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 567999999999999999999999999999999988762 23336778888999999999999 788999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+.+...+|.||...|+++.|.... ..+++|+.|.+|++||+....+..+.. ....+..++.+ ...++++.
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH--- 319 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGH--- 319 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecc---
Confidence 99999999999999999999987655 459999999999999998866655432 33344555554 34455554
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC--CCCcCeEEEe
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 641 (1135)
.|+.|++||.++..+..+...+. .|+++..++++..+.+.+.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 320 -~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 320 -FDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -cccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 47779999999999999888766 799999999999999999999999999999998888865432 2357899999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 642 KEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
|++.|+++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 444444
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.9e-26 Score=253.36 Aligned_cols=272 Identities=17% Similarity=0.253 Sum_probs=211.5
Q ss_pred CCCCceEEEEEeCCcceeeeecccceeEEEeecccCC------C---------CCC----------cccc----------
Q 001157 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N---------PSG----------KATA---------- 814 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~------~---------~~~----------~~~~---------- 814 (1135)
.|.+.|.++.||+||++||+++.|+.|+||.+...+. . .++ ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999976110 0 000 0000
Q ss_pred cccceeccCCCCCccc---cCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEe
Q 001157 815 NVAPQLWQPPSGTLMT---NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 890 (1135)
Q Consensus 815 ~~~~~~~~~~~~~~~~---~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 890 (1135)
... .+.+........ ..+.| | ...|..+.||.++ +|++++ |.+|++|++...+|++.|. |.+-||||+|+
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 000 011111111111 12344 8 9999999999875 555666 9999999999999999998 99999999999
Q ss_pred CCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCC
Q 001157 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1135)
Q Consensus 891 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~ 970 (1135)
|-|.+|+++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+.
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999999999999999999998877766655 7799999999999999999999999999998776666666655555
Q ss_pred CCCCCCceeEEECCCCc--EEEEEECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 971 QSPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 971 ~~~~~~v~~~~fspdg~--~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
......|+++.|.|... .|+++.|..|+|||. ....+..+..... ...-....|+.||++|+++++|..|+||++.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 54445799999997655 777799999999999 5566666554432 2334567899999999999999999999985
Q ss_pred CC
Q 001157 1048 TL 1049 (1135)
Q Consensus 1048 ~~ 1049 (1135)
..
T Consensus 577 ~~ 578 (712)
T KOG0283|consen 577 SF 578 (712)
T ss_pred CC
Confidence 43
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=244.16 Aligned_cols=287 Identities=20% Similarity=0.264 Sum_probs=234.8
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
++..++.+.++|.+|+.||.|++|++..-..... .+ ....+..|.++|+.++...+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5566655555899999999999999865432111 00 1123567999999999999999999999999
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEE-ecCCCceEEEEEcCCCcEEEEEcCCCe--eEE--------Eec-CCCC
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQY--------TFE-GHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~--------~l~-~h~~ 498 (1135)
+|++|+...+. -.+..++..|.+.|.|+++ .++.. .+|+||-|+.|.+||+.+|. .+. .+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 2233377889999999999 66666 89999999999999999872 332 233 7889
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|.+++.++.+ ..+++|+..+.+++||-++...+..+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999987755 89999999999999999999999999999999999999999999999975 8899999999999
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
++.++..|.+ .|.++..+|+-..+++|+.||.|+.=|+++......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999998853333332222 25777777754455567788999999
Q ss_pred EECC
Q 001157 659 LANS 662 (1135)
Q Consensus 659 w~~~ 662 (1135)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9654
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.5e-26 Score=231.39 Aligned_cols=285 Identities=14% Similarity=0.231 Sum_probs=230.5
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecc----cccccccccccccccCCCeeEEEEcCC
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.|.-+|+||+++||++ +.++++.+|+|.=|++.+|+.... +|.- .....+....- .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4888999999999998 678999999999999999985521 1111 00112222222 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|.+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999988776 6889999999999987666 6899999999999999999989999999999
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|.+|...... ..+..|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999865443 55556669999999999 45556677888889999999655 56677764 88899999999988
Q ss_pred eEEeecccC-----------CceeEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCCCCCcCeEEEecCC
Q 001157 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 580 ~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
+.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..++. ...|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653221 15788999999999999999999999999877 34455543 3468999999999
Q ss_pred CEEEEE
Q 001157 645 SLLAVT 650 (1135)
Q Consensus 645 ~~l~~~ 650 (1135)
+.+++|
T Consensus 438 k~ivag 443 (479)
T KOG0299|consen 438 KRIVAG 443 (479)
T ss_pred CEEEEe
Confidence 966655
No 99
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=5.2e-25 Score=249.54 Aligned_cols=257 Identities=12% Similarity=0.138 Sum_probs=197.7
Q ss_pred EeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-
Q 001157 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1135)
Q Consensus 365 gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~~~- 442 (1135)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556778888765543222 26789999999999997 78999999999999999986432
Q ss_pred e----eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE
Q 001157 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 443 ~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s 518 (1135)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122356789999999999999874 56799999999999999998888776 66889999998865 8999999
Q ss_pred cCCeEEEEeCCCCCceEEecCCCCeEE-----EEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCC-ce
Q 001157 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1135)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1135)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..+++|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999988888888876433 3345689999999887655557899999985 5666655443321 22
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|+..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 333334568888999999999999998764 34444333445778899999653
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.3e-25 Score=240.67 Aligned_cols=283 Identities=15% Similarity=0.294 Sum_probs=240.5
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE-E
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v 414 (1135)
+++.+.+. |...|..+++.++. .++++|.||++++|+-..++.+.. ..+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 56677777 89999999998887 477899999999999876665432 235678888888 8
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
++-+ ++-+|++|+.|++|.+|...+...+. .+.+|...|+|++...++. ++|||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999987665 8899999999999877775 89999999999996 46777889
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|...|++++.-|. +.++|||.|++|++|.- ++...++.+|...|+.+++-+++.++ +|+ +||.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEe
Confidence 999999999998776 48999999999999954 67788899999999999998876555 554 489999999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+ +|+.+..+.+|.. -+++++...++..++++++|++++||+.. ++.+.+..+.- .|+++.+-++|. +++|++|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 8 7999999999998 89999988888999999999999999987 77777776543 688999888886 5678899
Q ss_pred CcEEEEECCC
Q 001157 654 NGIKILANSD 663 (1135)
Q Consensus 654 g~v~iw~~~~ 663 (1135)
|.||||....
T Consensus 280 G~VrVfT~~k 289 (745)
T KOG0301|consen 280 GRVRVFTVDK 289 (745)
T ss_pred ceEEEEEecc
Confidence 9999998763
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=245.27 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=207.0
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEcCCCCce---eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-
Q 001157 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1135)
Q Consensus 413 ~v~~s-pdg~~la~~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 487 (1135)
.+..+ |.+++|.+|+.||.|++|+....... .....++.|...|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 33444 46778999999999999998654321 12336778999999999999998 7999999999999999887
Q ss_pred -eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eE--------Eec-CCCCeEEEEEEcCCCCE
Q 001157 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 -~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1135)
-++.++..|...|.|+++-.. +...+++|+.|+.|.+||+.++.. +. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 577889999999999998322 338999999999999999997633 11 222 56678999999999988
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++|+. ++.|++||.++++.+..+.+|.+ .|.++..++||..++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888875 56699999999999999999998 899999999999999999999999999999999999988865 59
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998888775
No 102
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.6e-25 Score=250.62 Aligned_cols=254 Identities=17% Similarity=0.194 Sum_probs=205.2
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----------eeeeEeecCCCCeeEEEEec-CCCceEEEEEcC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~ 475 (1135)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4455777777888887888888887778876554322 11224679999999999999 777 8999999
Q ss_pred CCcEEEEEcCCC-------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
|++|++||+.++ ..+..+.+|...|.+++|+|..+ ++|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998743 6999999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCCe-ee
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1135)
|+|+|++|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999874 888999999999999999988764556678999888888754 47999999998754 33
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchhee
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~ 669 (1135)
.....+. ...+....|++++.+|++++ .|+.|++||+.++ ....
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~ 296 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTF 296 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEE
Confidence 3333322 22455667899999999887 4999999999887 4433
No 103
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=252.00 Aligned_cols=243 Identities=20% Similarity=0.293 Sum_probs=212.9
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+...+.|..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 77899999999999999999876652 3889999999999987455 899999999999999999
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998744 678899999999999999999999999999999999998 889999986 6
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +++++|+.|++|++||+.+. +++.++..|.. .+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999887 8999988765 89999999999999999999 99999988755 344433 4578
Q ss_pred EEEEEeCCCcEEEEECCCcchheeecc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
+|++++.|++|++||..++ ++.+.+.
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~-~~~~~~~ 450 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG-ECLRTLE 450 (537)
T ss_pred eeEeccccccEEEeecccC-ceeeeec
Confidence 9999999999999998887 4444443
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=223.86 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=244.4
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
..++++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788888888844 688999999999999999887764 88999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC--CCCCeEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~--h~~~v~~l~ 504 (1135)
+.|..|+||......... ....|..+|+.+..+|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5668999999999999999 999999999999999999998876653 234589999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|||++ .+|.+|..|+.|++||+.+......+.+|.++|..++|+.+|-+|++++. |+.|++||++..+...++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99866 89999999999999999999999999999999999999999999999984 6679999999988888888
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
......+.++.|.+.|.+++.++.|=+|++++-.+. ..+..+..+ .+..+.+.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 776657999999999999999988877777775443 344444444 346789999999999999999999888754
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.9e-26 Score=219.30 Aligned_cols=297 Identities=15% Similarity=0.209 Sum_probs=245.1
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++++.+. |.++|+.++...... ++.+++.|.+.+||.+++|.++.+ +.||.+.|+|+.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 34566666 999999999988776 899999999999999999999875 789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEc------CC------------------------------CCce-eeeeEeecCCCCeeE
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTY------NP------------------------------TGEL-RQHLEIDAHVGGVND 458 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~------~~------------------------------~~~~-~~~~~~~~h~~~v~~ 458 (1135)
|++.+.++++++.|++.+||.. .. +..+ .+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 11 0001 134467899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEEe
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~ 537 (1135)
..|...|+ .+++++.|++..+||+++|..+..+.||....+.++-+|.. .++++.+.|.+.++||++.. ..+..+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 69999999999999999999999999999999999998876 89999999999999999843 345688
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
.+|...|+++.|..+. .+++++ .|.+|++||+++.+ ++.++.... +++.++.+..+..++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgS----DDrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGS----DDRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecC----CCceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999998764 556665 38899999998654 566666543 788899998888888888899999999
Q ss_pred CCCCeeeEEE--eCCCCCCCcCeEEEecCCC--EEEEEeCCCcEEEEECCCc
Q 001157 617 MDNMNMLTTV--DADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~ 664 (1135)
+...++.... .-.++...|.|++|..+.. -|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9865433222 2334455789999986543 4788899999999998654
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=199.57 Aligned_cols=307 Identities=13% Similarity=0.109 Sum_probs=228.3
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
....|.+++|.|.|...+++++..+++|-..+.......+...+... ..++...-+ .| .+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~p--------p~v~~kr~k--hh-kgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQP--------PSVLCKRNK--HH-KGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCC--------CeEEeeecc--cc-CccEEEEEecC
Confidence 45679999999999999999999999886543211111111110000 001111112 25 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceE-----EEEeeCCCCCeeEEEEeCC---CCcEEEEEe-CCccEEEEEcccceEeEee
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~sp~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l 920 (1135)
+|.+||+|+ |.+|++..+....+ -..|.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 88898876654322 2456779999999999742 467888765 5788999999999999999
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISV 999 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~v 999 (1135)
.||.+.|.++- +=+|-++++|+.|.+|++||+.-.......- ....+.-...+.|..++..|.|++|+++ .|....+
T Consensus 180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence 99999998863 4578899999999999999998654322110 0111111122689999999999999997 5889999
Q ss_pred Eecc-CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 1000 YDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1000 wd~~-~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
||+. +..+..+ +.|+..|.++.|||...+|++++.|..|++-|+. |.+-.+ +|.-.+..|...++.+.|
T Consensus 258 ydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~e------l~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 258 YDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHE------LPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred EEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhc------CceEEEEeccCceEEEEe
Confidence 9994 4555555 5669999999999999999999999999999997 443333 344455688899999999
Q ss_pred CCCCCCEEEEEecCCcEEEEecC
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
+| ..--+++.+.|.++.+|-+.
T Consensus 328 h~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred cC-ccceeeeccCcceEEEeccC
Confidence 99 44667888999999999764
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=228.41 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=213.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeee--------------eEe-ecCCCCeeEEEEecCCCce
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~d~~~~ 468 (1135)
+..|.-+|.|++++||+++.++++.+++|.=|++.+++..+.. ..- .+|...|.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4579999999999999999999999999999999888643110 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|++|++|+++....+.++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999996554 6899999999999999998888889999999999998
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...-++.+-+++. |+++++|++.. +..-.|.++.. .+.|++|-. ...+++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8887777766654 88899999953 33345666655 789998875 46899999999999999999998887753
Q ss_pred CCCC----------CCcCeEEEecCCCEEEEEeCCCcEEEEECCCcch
Q 001157 629 DGGL----------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 629 ~~~~----------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 666 (1135)
..+. ..|++++..|...++|+|+.+|.|++|-+..+.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 2111 1578999999999999999999999999988743
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=229.72 Aligned_cols=303 Identities=14% Similarity=0.235 Sum_probs=234.1
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC----ceeEEeecccCCceeEEEEeCCCCEEEEEec
Q 001157 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1135)
....+..+...|.++++.|.|-.+++|+. |..|++||+... +..+.+.......|++++|++.|..|++.+.
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 34466777889999999999999999987 677999998642 2233344334447999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeCC----------CCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcchheeeccCcccc
Q 001157 609 EFQIKFWDMDNMNMLTTVDAD----------GGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 677 (1135)
....+++|-...+.....++. +|...+++.+|+|+. ..+++++.||++|||++.+.+...+.++....
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~- 313 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA- 313 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC-
Confidence 999999998877766655432 456678999999954 57889999999999999887555554433211
Q ss_pred cCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccC
Q 001157 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1135)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~ 757 (1135)
T Consensus 314 -------------------------------------------------------------------------------- 313 (641)
T KOG0772|consen 314 -------------------------------------------------------------------------------- 313 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCC
Q 001157 758 PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837 (1135)
Q Consensus 758 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1135)
.+..-.++..+|++||+.|++++.||.|.+|+....-..+.-.+ ...
T Consensus 314 -----------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v----------------------k~A 360 (641)
T KOG0772|consen 314 -----------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV----------------------KDA 360 (641)
T ss_pred -----------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe----------------------eec
Confidence 01234578899999999999999999999998643222111111 111
Q ss_pred CCCC--CeeEEEeecCCCEEEEEe-CCeEEEEeCCCc-eEEEEeeCC--CCCeeEEEEeCCCCcEEEEEe------CCcc
Q 001157 838 PTEE--SAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSP--PPAATFLAFHPQDNNIIAIGM------EDSS 905 (1135)
Q Consensus 838 h~~~--~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~~~~~--~~~v~~l~~sp~~~~~lasg~------~dg~ 905 (1135)
| .. .|+|+.||+||++|++-+ |+++++||+... +++....+- ..+-+.++||| +.++|++|+ ..|+
T Consensus 361 H-~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 361 H-LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred c-CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCce
Confidence 4 44 899999999999999998 999999999874 455554442 24568899999 889999986 3478
Q ss_pred EEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 906 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+++||..+.+.+.++.-....|..+.|+|.-+.|..++.||+++++=-.+
T Consensus 439 L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 99999999999998887788899999999988899999999999874433
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-24 Score=212.26 Aligned_cols=244 Identities=18% Similarity=0.246 Sum_probs=206.3
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+..|.++|+++|. +|.++|+|+.|-+|+|||+.+...+. .+-.|.+.|+++.|.++-..-.|++|++||.|.+|
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 36789999999999 69999999999999999999987666 66689999999999988643369999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
+...-.++.++++|.+.|+.++.+|++ .+-++.+.|+.+++||+-.++.-........ -+.+.|+|.|.+++.++
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 999999999999999999999999987 8999999999999999988877665554333 33499999999888876
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE--
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-- 640 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-- 640 (1135)
...|-+|.+.+......+.... .+.|+.|. ++..+++|++|+.|.+||.++..+...+.+|.. .|..+.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 4559999988777665555432 45666665 467899999999999999999999988887754 7888874
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCc
Q 001157 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 457889999999999999999765
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=216.07 Aligned_cols=331 Identities=12% Similarity=0.213 Sum_probs=250.5
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
++++.+.+|.+ .|..++.......+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 45567888888 788888877778888899999999999999999999998755 899999999999999999999999
Q ss_pred EEECCCcchheeec--cCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 658 ILANSDGVRLLRML--EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 658 iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
||...-.-...+.. .+|+. .
T Consensus 216 IW~~av~~~vP~~~a~~~hSs----------------------------------------------------------E 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSS----------------------------------------------------------E 237 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCc----------------------------------------------------------h
Confidence 99743221000000 00000 0
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
.. .-..| ...+-..-....|| .+|++
T Consensus 238 eE--~e~sD--------------------------e~~~d~d~~~~sD~---------~tiRv----------------- 263 (481)
T KOG0300|consen 238 EE--EEHSD--------------------------EHNRDTDSSEKSDG---------HTIRV----------------- 263 (481)
T ss_pred hh--hhccc--------------------------ccccccccccccCC---------ceeee-----------------
Confidence 00 00000 00000000001111 12222
Q ss_pred ccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCC
Q 001157 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 894 (1135)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||++++.++..+.+|....+.++-+| ..
T Consensus 264 -------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQ 326 (481)
T KOG0300|consen 264 -------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQ 326 (481)
T ss_pred -------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cc
Confidence 1112344 7 88999999999999999999 99999999999999999999999999999999 89
Q ss_pred cEEEEEeCCccEEEEEcccc-eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
+++++.+.|.+.++||.... ..+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+.... +.....
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp----lATIRt---- 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP----LATIRT---- 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc----ceeeec----
Confidence 99999999999999999743 567789999999999999865 46899999999999999985532 111111
Q ss_pred CCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccC--CCCCCCCCeEEEEEccCCC--EEEEEecCCcEEEEecCC
Q 001157 974 LVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~--~~~~h~~~i~~~~~s~dg~--~l~s~~~dg~V~vwd~~~ 1048 (1135)
.+++..++.+..+..+++ -++..|++||+++..+..+. ...+|...|+|.+|+.+.- -|++++.|..|.-|.+..
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 157889999999988888 45678999999998887776 4468999999999986543 478899999999999875
Q ss_pred C
Q 001157 1049 L 1049 (1135)
Q Consensus 1049 ~ 1049 (1135)
-
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.4e-26 Score=227.31 Aligned_cols=282 Identities=12% Similarity=0.182 Sum_probs=230.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|.++|.|++=+|..-..+|+|+.||.|+|||+....++.+ +..|.+.|..+++.. ..++
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~~~ 123 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TSFF 123 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cceE
Confidence 8899999999999854789999999999999999887764 678999999999977 7888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.-....|.++.
T Consensus 124 tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred EecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEEe
Confidence 9999999999998873 222 3332 34566666666566 7889886 589999999999999988888999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~ 583 (1135)
|+|... ..|++|+.|+.|.+||++...++..+.. ...-+.++|+|.+-.++++. .|..++.+|++. ..++..+
T Consensus 195 fNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~v~ 268 (433)
T KOG0268|consen 195 FNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLNVH 268 (433)
T ss_pred cCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccchhh
Confidence 999875 7889999999999999998887765432 33556889999666666664 478899999986 4567778
Q ss_pred ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+|.. .|..+.|+|.|+.+++||.|.+|+||.++.+........ .....|.++.||.|.+++++|++|+.|++|....
T Consensus 269 ~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 269 KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 88877 899999999999999999999999999987764433321 1223689999999999999999999999998754
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 347 s 347 (433)
T KOG0268|consen 347 S 347 (433)
T ss_pred h
Confidence 4
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.4e-24 Score=210.14 Aligned_cols=249 Identities=16% Similarity=0.188 Sum_probs=195.7
Q ss_pred cccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 405 ~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
....+.|.+++||| ...++++++.|++||+|+++....... +....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678899999999 556677899999999999987433222 24567999999999999998 799999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++ +..+..|.++|..+.|.+...-..|++||.|++|++||.+...++.++...+ .++++.. ....++.+..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677789999999999887766799999999999999999888887776554 3444332 2334555543
Q ss_pred CCCceEEEEeCCCCcee-EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEEeCCCC-------CC
Q 001157 564 EGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 633 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1135)
++.|.+|+++.+... +.....-.-.++|+++.++....+.|+-+|.+-+..++.+ +.-.+++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 667999999765432 2222223336899999999988899999999999999886 44455565542 23
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.|++++|+|.-..|++++.||++.+||-+..
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999889999999999999997544
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.7e-26 Score=225.95 Aligned_cols=200 Identities=17% Similarity=0.252 Sum_probs=166.4
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEe
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd 527 (1135)
.+.||.+.|.|++=+|..-. .+++|+.||.|+|||+.+..++.+|+.|.+.|..|++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999998733 699999999999999999999999999999999999965 5689999999999998
Q ss_pred CCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE-EEE
Q 001157 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAA 606 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~ 606 (1135)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....+++++....+ .|.++.|+|....+ +++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 222222 2345666666677788888864 499999999999999998777 89999999988655 456
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.|+.|.+||++.+.++..+...- .-+.++|+|++-.+++|+.|..++.+|+..-
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhh
Confidence 699999999999999988876542 3578999998888999999999999997644
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.3e-24 Score=208.73 Aligned_cols=268 Identities=19% Similarity=0.272 Sum_probs=216.9
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.+.|.++.|+|.+..|| +++-||++++||+....... .-.|+.++.+++|.+ ...+++
T Consensus 13 ~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred hhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEEE
Confidence 56899999999988555 56799999999998875432 234999999999986 667899
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
|+.||.|+.+|++++... .+..|..+|.|+.+++... .+++||.|++|++||.+.......+. ....|.++..
T Consensus 71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV 143 (323)
T ss_pred eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence 999999999999998754 4667999999999998776 79999999999999998766665554 3448888865
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC----ce
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----AI 579 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~~ 579 (1135)
.|+.|+.|+.|..+.+||+++........ .-.-.+.++++-|++.-.++++. +|.|.+=.+... +.
T Consensus 144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence 33789999999999999999877655322 22347899999998887777765 666776655544 44
Q ss_pred eEEeecccCC--------ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 580 KRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
...|++|... +|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||+++
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence 4567776532 6889999999999999999999999999999988887654 34689999999999999987
Q ss_pred C
Q 001157 652 S 652 (1135)
Q Consensus 652 ~ 652 (1135)
.
T Consensus 294 s 294 (323)
T KOG1036|consen 294 S 294 (323)
T ss_pred c
Confidence 5
No 115
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3e-24 Score=208.65 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=189.4
Q ss_pred ceEEEEEeCCcceeeeecc-cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 774 KVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+.++|+||.+.+++... ...+++|.+...+. |...... .-||-. .+ ...| .-.+..+-...++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~~--v~~D~~-------~f-~~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHHF--VHIDNL-------EF-ERKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCccc--cccccc-------cc-chhc-ccceEEEeecCCc
Confidence 4678999999987766554 57899998754322 2221110 011100 00 0125 6677778888899
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---c-----eEeEeecCc
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-----EVKTKLKGH 923 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h 923 (1135)
++|++++ |.+|.+|++. |+.+..+......-+..+.|| +|++||+++.--.|++|.+-- | ..+..|+||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8889999998 899999887777788899999 999999999999999998642 2 234468999
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc--cceeeecCC-CCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL--KSRFIQAPA-GRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~--~~~~~~~~~-~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
++.|..++||++...++|++.||+++|||++-.-.. ....++... ......+....+..+|.|+.|+++....+++|
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 999999999999999999999999999998631111 111222211 01111145569999999999999999999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
.. +++....+. ..|+..|++++|++||+++++++ |..|++..-..|
T Consensus 358 ~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 358 ASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 99 655554443 45699999999999999999988 889998864333
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=218.35 Aligned_cols=240 Identities=17% Similarity=0.259 Sum_probs=215.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 357788888888899999999999999999988776 8899999999999999998 89999999999999998888
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.......|..+|+.+..+|++ .||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 888888999999999999876 89999999999999999999887766553 347899999999999999875 8
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
+.+++||+.++..+..|.+|.. +|..++|+.+|-+++++++|+.|++||++..+.+.++...... .+.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 8999999999999999999887 9999999999999999999999999999999999998876654 7899999999999
Q ss_pred EEEEeCCCcEEEEEC
Q 001157 647 LAVTTSDNGIKILAN 661 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~ 661 (1135)
|+.++.|=.|++++-
T Consensus 447 L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK 461 (506)
T ss_pred EEeecceeEEEEEec
Confidence 999987766666653
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=209.45 Aligned_cols=310 Identities=15% Similarity=0.131 Sum_probs=206.0
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
..+++|++.|++++||.||++||+++.|++|+||+++.-. .++...+ -+.-+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccC
Confidence 3488999999999999999999999999999999998632 1222111 224578899999886 56666677
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
.++++|.+...+. . ..+...+. ||--. ....|...+-.+-....+++|
T Consensus 155 ~~l~vyk~~K~~d-G-----~~~~~~v~---------------------~D~~~-----f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-G-----SGSHHFVH---------------------IDNLE-----FERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CEEEEEEeeeccc-C-----CCCccccc---------------------ccccc-----cchhcccceEEEeecCCceEE
Confidence 7888887543221 1 11111111 21000 001123334445555677888
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC---CCe---eeEEEeCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD---NMN---MLTTVDADG 630 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~---~~~~~~~~~ 630 (1135)
++++. +..|.+|+++ |+.+..+..... .-...+.+|+|+++++++..-.|++|.+- .|. ....++..+
T Consensus 203 msas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 203 MSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 88875 5568899988 888887776554 45668899999999999988889999853 222 223334445
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
|...|..++|+++...+++.+.||++++||.+-..+.-+ ...
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q-----Dpk--------------------------------- 318 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ-----DPK--------------------------------- 318 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC-----Cch---------------------------------
Confidence 566899999999999999999999999999753311100 000
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
.++ ....|.....+....++++|+|+.|+++
T Consensus 319 -----------------------------------~Lk--------------~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 319 -----------------------------------ILK--------------EGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred -----------------------------------Hhh--------------cCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 000 0000111122333489999999966665
Q ss_pred cccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEe
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFN 867 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd 867 (1135)
.. ..+++|.. ++|......-.. | ...|++++|+++|+++|+++|..++++.
T Consensus 350 ~g-s~l~~~~s----------------------e~g~~~~~~e~~--h-~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 350 FG-SDLKVFAS----------------------EDGKDYPELEDI--H-STTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred cC-CceEEEEc----------------------ccCccchhHHHh--h-cCceeeEEecCCCcEEeeecceeeeeec
Confidence 44 46666644 334333322222 7 8999999999999999999999998886
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-22 Score=223.05 Aligned_cols=559 Identities=14% Similarity=0.167 Sum_probs=347.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCc-eEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.-.||+|+++++.+. +..|.||...++.++. .+.+|..+++.+.+.|.... .++++++.||.|++||...+.+++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 346899999998875 4569999999999887 78899999999999987763 478899999999999999999998
Q ss_pred EecCCCCCeEEEEeccC------------CCccEEEEEEcC--CeEEEEeCCCCCce-EEecCCCCeEEEEEEcCCCCEE
Q 001157 492 TFEGHEAPVYSVCPHHK------------ESIQFIFSTAID--GKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~------------~~~~~l~s~s~d--g~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
++..+ .++.++.+.|. .+-..+.+.+.+ ++++-+.+.+.... ..+......-.++.+++.|.+.
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 88633 33444433211 110111111111 11111111110000 0000011114577888888887
Q ss_pred EEEeeCCCCCceEEEEeCCCCcee---EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC--CeeeEEEeCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~ 631 (1135)
..+. +..+.+|+..++... +....++...+.+.+++|+++++++|..||.|.+|.--. ......-..|.|
T Consensus 176 ~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 176 GIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 7665 445889988765411 112223333578999999999999999999999997543 222222223444
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCC
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1135)
...|.+++|+++|.+|.+|+..|.+.+|.+.++++ +.+.
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLP--------------------------------------- 289 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLP--------------------------------------- 289 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCc--cccc---------------------------------------
Confidence 56899999999999999999999999999988831 1111
Q ss_pred CCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeec
Q 001157 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1135)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 791 (1135)
. -.+.|..+.+|||+.+.+...
T Consensus 290 --------------------------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 290 --------------------------------------------------------R--LGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred --------------------------------------------------------c--cCCeeEEEEEcCCCCeEEEEe
Confidence 0 235688999999999999999
Q ss_pred ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC
Q 001157 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (1135)
Q Consensus 792 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~ 870 (1135)
.|+.|.+-.....+.... +.-..+.+... + .+. .+-.+.++++|.-+.++-.+ .|.|.+||+.+
T Consensus 312 ~DNqI~li~~~dl~~k~t--------Isgi~~~~~~~-----k-~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKST--------ISGIKPPTPST-----K-TRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCceEEEEeccchhhhhh--------ccCccCCCccc-----c-ccc-cccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 999999876543221100 00000000000 0 001 44567789999545455554 89999999988
Q ss_pred ceEEEEeeC-----CC------CCeeEEEEeCCCCcEEEEEe--------CC--ccEEEEEcccce----EeEe-ecCcc
Q 001157 871 FKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------ED--SSVQIYNVRVDE----VKTK-LKGHQ 924 (1135)
Q Consensus 871 ~~~~~~~~~-----~~------~~v~~l~~sp~~~~~lasg~--------~d--g~v~iwd~~~~~----~~~~-l~~h~ 924 (1135)
.+.+..+.. +. -.+++++.+- .|.+++|+- .| -.+++|-..... +... -..|.
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 776655431 22 2478888888 699999864 33 357788765433 2222 35687
Q ss_pred CceEEEEEcCCC-C-eEEEEcCCCcEEEEeCCCccccc-----ceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 925 NRITGLAFSPTL-N-ALVSSGADAQLCMWSIDKWEKLK-----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 925 ~~i~~l~~s~d~-~-~l~s~~~D~~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
..+...+|.+.. . ..+|++.||.++||-+...+... ..+.....-|. .++..++|+.||+.|+++.++.|
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEE
Confidence 777666665433 3 79999999999999984432111 11111111122 67899999999999999999999
Q ss_pred EEEeccC-CcccccCCCCCCCCCeEEEEEcc----CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc--------c
Q 001157 998 SVYDSKL-ECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT--------Y 1064 (1135)
Q Consensus 998 ~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~----dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~--------~ 1064 (1135)
.+||... ..+....... ..++..+.|.. ++.. .......+.+|++.++...-.+.....+.. .
T Consensus 533 tiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~ 608 (792)
T KOG1963|consen 533 TIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGAL--VHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADG 608 (792)
T ss_pred EEecCCChhhhhcccccc--ccchHhHhhhcccccccce--eeccCceEehHhhhhhheecchhhhhhhhcchhhhhhcc
Confidence 9999933 3322222111 34455554443 3332 233467899999988877653221111110 1
Q ss_pred ccCCCCCCcEEEeeCCCCCCEE------EEEecCCcEEEEecCCCc
Q 001157 1065 AVSSNTAHPLVIAPHPSEPNQI------ALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1065 ~~~~~~~~~~~~~~sp~~~~~l------~s~~~Dg~i~lW~~~~~~ 1104 (1135)
....-+....-++|.| +..++ +..+.|+.|.+++...++
T Consensus 609 ~s~v~s~~f~vi~~~p-~~~~~~k~~~~~f~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 609 DSSVGSTAFAVICWLP-ELLLVVKSIEQIFRGRDSRILIFSGDSPK 653 (792)
T ss_pred ccccCccceEEEeecc-cchhhhhhhhhhcccccceEEEecCCCch
Confidence 0011112222345555 21110 156778888888776655
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.6e-21 Score=212.83 Aligned_cols=277 Identities=15% Similarity=0.206 Sum_probs=224.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|..+-+.++|.|+|. +|.+++.||.|++|+...-..... .+..++..|.+++. ++.+|+
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~~f~ 70 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSNHFL 70 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--cccceE
Confidence 677899999999998 788888999999999876521110 12226777887776 556999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.+++|.+|....++.-. .+....-++++++|+.+|+ ++|.||.|-.|++-++.+......+++|.++|.++.
T Consensus 71 ~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 71 TGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred EeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 99999999999999876533 2334566899999999999 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--------CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
|+|.+ .+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..++..+. ++.|.+|+...
T Consensus 146 ~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 146 YDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRKG 219 (933)
T ss_pred EcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccCC
Confidence 98866 89999999999999999987766544331 346788999999777666654 77899999999
Q ss_pred CceeEEeecccCC-ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 577 GAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 577 ~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
+.....+...... .+.+++|+|+|+||++++.||.|.|||+++.+. |.....|.+++|.|+...+-.-...|.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeeccc
Confidence 9988888765433 388999999999999999999999999998322 333457999999999887766655555
Q ss_pred EEEE
Q 001157 656 IKIL 659 (1135)
Q Consensus 656 v~iw 659 (1135)
..+|
T Consensus 294 ~~~~ 297 (933)
T KOG1274|consen 294 LGVS 297 (933)
T ss_pred cccC
Confidence 5444
No 120
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.4e-23 Score=237.97 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=182.8
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEEcCCCe--------eEEEecCC
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~l~~h 496 (1135)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688999999876543 3378899999999999997 56 89999999999999997642 34567899
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
...|.+++|+|.+. .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999999753 456899999999999999888776665 4568999999999999998864 77899999999
Q ss_pred CceeEEeecccCCc----eeEEEEeCCCCEEEEEecCC----eEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEE
Q 001157 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1135)
++.+.++.+|.... +....|+++++++++++.|+ +|++||+++ .+++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677766655443333333345568899
Q ss_pred EEEeCCCcEEEEECCCc
Q 001157 648 AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~ 664 (1135)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=223.32 Aligned_cols=293 Identities=14% Similarity=0.216 Sum_probs=236.1
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+.+++|.|+.-|.++.+|...+ .+.||+ .|.|+|||+....... +...--.....+-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 3477888999999999999998 577776 6899999997542110 11100012355679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22223433344678899999999 88999999999999999999999999999
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+.+.||.+++++ ..|.+|+.|++||.||++.+....... ....|.++.++|++.+++.|-. ++.+.+.... +
T Consensus 552 DGascIdis~dG--tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISKDG--TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecCCC--ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 999999997654 899999999999999999887766544 3458999999999999999874 5556666543 3
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.....+..|.. .|.++.|.+.|+++++.+.|+.+..|...-|..+...+.. ..|.++.++.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33445555555 8999999999999999999999999999988877766533 4689999999999999999998888
Q ss_pred EEEC
Q 001157 658 ILAN 661 (1135)
Q Consensus 658 iw~~ 661 (1135)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=3.7e-24 Score=219.65 Aligned_cols=267 Identities=14% Similarity=0.253 Sum_probs=216.2
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+....+.|.++|+.+.+-|....++|+++..+.|.|||+.+-.-.... .+...+...+.+|...-.+++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345556699999999999999999999999999999998764332210 00111223478999988899999
Q ss_pred CCCC-EEEEEeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC--CCeeE
Q 001157 418 PDGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQ 490 (1135)
Q Consensus 418 pdg~-~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~ 490 (1135)
+... .|++++.|++|++||+..... +.....+.+|...|..++|++-... +++++++|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9644 889999999999999986543 5566678899999999999998776 79999999999999999 56666
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
+...+|.+.|+|++|+|.+ +..|++||.|++|++||+++... ...+..|...|.++.|+|....+++.+. .|+.+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl 341 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL 341 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence 7788999999999999986 48999999999999999998765 5588999999999999998776554432 48889
Q ss_pred EEEeCCCC--------------ceeEEeecccCCceeEEEEeCCCCEEEE-EecCCeEEEEECCC
Q 001157 570 VEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 570 ~~wd~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
.+||+..- +++..-.||.. .|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998642 23355567766 7999999999987554 78999999999863
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-22 Score=221.80 Aligned_cols=510 Identities=15% Similarity=0.187 Sum_probs=326.8
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCc-cEEEEEEcCCeEEEEeCCCCCceE
Q 001157 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 457 ~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
..-.||+|++ .++.+. +..|.||...+|.++..+.+|..++..+.+.|.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457999998 444443 568999999999999999999999999999887654 678899999999999999888877
Q ss_pred EecCCCCeEEEEEEcC---CCCEEEEEe-eC--------CCCCceEEEEeCCCC--ceeEEeecccCCceeEEEEeCCCC
Q 001157 536 DYDAPGNWCTMMAYSA---DGTRLFSCG-TS--------KEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~---~~~~l~~~~-~~--------~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1135)
.+..+.. +..+.+.| +-...+..+ .+ .+-.++++-+.+.+. ........+. .-.++.+++.|+
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCce
Confidence 7665433 33333322 111112111 10 011111111111110 0000111111 134577888777
Q ss_pred EEEEEecCCeEEEEECCCCeeeEEE-e-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccC
Q 001157 602 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
+.+.. .+..+.+|...+....... . ...|.-.+++.++||+++++|+|..||.|.+|.--.. ....
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~---- 241 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDS---- 241 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------cccc----
Confidence 66655 4567889998875511111 1 1122224789999999999999999999999964221 0000
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
...++.-|
T Consensus 242 ---------------------------------------------------------------~t~t~lHW--------- 249 (792)
T KOG1963|consen 242 ---------------------------------------------------------------ETCTLLHW--------- 249 (792)
T ss_pred ---------------------------------------------------------------ccceEEEe---------
Confidence 00112222
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
|...|.+++|+++|.+|++|+..|.+.+|.+.+++. ..++. -
T Consensus 250 -----------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------------qfLPR--L- 291 (792)
T KOG1963|consen 250 -----------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------------QFLPR--L- 291 (792)
T ss_pred -----------cccccceeEEecCCceEeecccceEEEEEeecCCCc------------------------ccccc--c-
Confidence 677899999999999999999999999997754321 11221 1
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-----------CCeeEEEEeCCCCcEEEEEeCCccEE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-----------PAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-----------~~v~~l~~sp~~~~~lasg~~dg~v~ 907 (1135)
..+|..+.+|||+.+.+..- |+.|.+....+.....++.+.. +-.+.++++| ..+.++..+..|.|.
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ 370 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQ 370 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEE
Confidence 77899999999999887776 9999999887766655554422 2367789999 778888899999999
Q ss_pred EEEcccceEeEeec-----------CccCceEEEEEcCCCCeEEEEc--------CC--CcEEEEeCCCcccccceeeec
Q 001157 908 IYNVRVDEVKTKLK-----------GHQNRITGLAFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQA 966 (1135)
Q Consensus 908 iwd~~~~~~~~~l~-----------~h~~~i~~l~~s~d~~~l~s~~--------~D--~~i~iWd~~~~~~~~~~~~~~ 966 (1135)
+||+.+.+.+..+. .+.-.+++++.+-.|.+++|.- .| -.+++|-.....+.-...-..
T Consensus 371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99999877665542 1233578888888999999863 33 358899877655332222222
Q ss_pred CCCCCCCCCCceeEEECCCCc-EEEE-EECCcEEEEeccC-Cccc----ccC---CCCCCCCCeEEEEEccCCCEEEEEe
Q 001157 967 PAGRQSPLVGETKVQFHNDQT-HLLV-VHESQISVYDSKL-ECSR----SWS---PKDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~-~l~~-~~d~~i~vwd~~~-~~~~----~~~---~~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
...|.. ..+..+.+++... ..++ +.||.+++|-.+. ..+. .|. .+..|..++++++||.||..|+++
T Consensus 451 ~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s- 527 (792)
T KOG1963|consen 451 NNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS- 527 (792)
T ss_pred ecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-
Confidence 333331 2333333444433 5555 6899999998821 1111 111 112368899999999999877765
Q ss_pred cCCcEEEEecCC-CceeeccCCCcccCccccCCCCCCcEEEeeCCC-CCCEEEEEecCCcEEEEecCCCccccCC
Q 001157 1037 CDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS-EPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1037 ~dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~l~s~~~Dg~i~lW~~~~~~~~~~~ 1109 (1135)
.|++|.+||..+ .+..+..... ..| .....+... .....++....+.+.+|++.+....|..
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSR-NWP----------IAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cCCEEEEecCCChhhhhcccccc-ccc----------hHhHhhhcccccccceeeccCceEehHhhhhhheecch
Confidence 588999999998 4444443311 111 112222111 1123444556789999999998887843
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.4e-24 Score=229.90 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=223.4
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccc-cCCCCCCCCCCCeeE-E
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAAC-I 846 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~~-l 846 (1135)
.+|...|..+++.++. .+++++.||++++|+-... +.+. ..+.+ | .+-|.. +
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~~--~-~g~i~~~i 64 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFEG--P-KGFIANSI 64 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceeccc--C-cceeeccc
Confidence 4588888888877665 5899999999999963221 1111 11222 4 555555 7
Q ss_pred Eeec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 847 ALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 847 ~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
++.+ ++-.+++|+ |.+|.+|...+..++.++++|...|.++.... ++. +++|++|.++++|-. +++...+++|.
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~ 140 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHT 140 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcc
Confidence 7775 555688888 99999999999999999999999999999877 565 889999999999964 67777899999
Q ss_pred CceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccC
Q 001157 925 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~ 1004 (1135)
..|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||. +-|+.+++-+++.++-+++||.|+.|++++
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccC
Confidence 999999999988 899999999999998755 677888988 789999999999999999999999999999
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
.++..+ ++|..-|.++....++..++++++|++++||+.. ++...++.+ ...+-++.+-+ +|
T Consensus 210 e~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-----------ttsiWsa~~L~-Ng- 271 (745)
T KOG0301|consen 210 EVLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-----------TTSIWSAKVLL-NG- 271 (745)
T ss_pred ceeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-----------ccceEEEEEee-CC-
Confidence 998776 6779999999999999999999999999999887 555555422 13455666655 33
Q ss_pred EEEEEecCCcEEEEecC
Q 001157 1085 QIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1085 ~l~s~~~Dg~i~lW~~~ 1101 (1135)
-|++|++||.||||...
T Consensus 272 DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 272 DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CEEEeccCceEEEEEec
Confidence 47789999999999987
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.8e-24 Score=202.69 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=208.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~i 481 (1135)
-..|.+.|..+...--|++||+|+.|++|+|+.++.+.......+|.||.++|+.++|.. -|. +||+++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 457999999999888999999999999999999998877667779999999999999987 677 8999999999999
Q ss_pred EEcCCCee--EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCC---C
Q 001157 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1135)
Q Consensus 482 wd~~~~~~--~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 553 (1135)
|.-..|+- .+....|...|++++|.|.+-|-.|++++.||.|.+.+.+.... ......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99877753 34567899999999999999999999999999999998877622 2345667889999999986 5
Q ss_pred -----------CEEEEEeeCCCCCceEEEEeCCCCc--eeEEeecccCCceeEEEEeCCC----CEEEEEecCCeEEEEE
Q 001157 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd 616 (1135)
+.|++++. |+.|+||+...+. ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888875 7789999988764 4456888888 89999999965 5799999999999998
Q ss_pred CCCC-eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.... +.-..--.+.....+..+.||..|+.|++++.|+.|.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111112223468999999999999999999999999743
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=6.7e-24 Score=218.09 Aligned_cols=282 Identities=12% Similarity=0.162 Sum_probs=228.1
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|..-|..+++|...+++.+++ .|.|+|||+....-. ..+ ..+...+. ...|.++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k-------------------~Pv-sqLdcl~r-dnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK-------------------SPV-SQLDCLNR-DNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC-------------------Ccc-ccccccCc-ccceeeeEecC
Confidence 677788899999988888776 468999998653110 000 01111112 67899999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEE--EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 927 (1135)
||+.|++|+ -.++.|||+..-... ..+........+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 688999999865433 33333335678899999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
.||.+++||..|-|||-|.+||-||+.++.++...-+. +.|..+...|.+.+|+++ .++.+.|...++..
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---------SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---------hhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 99999999999999999999999999998765432221 578899999999999997 56788888774443
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
-..+ +-|.+.|.++.|++-|+++++.+.|.-+-.|...-|..+.... .+..|++|..|. |.++|
T Consensus 626 kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------E~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 626 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------ESSSVLSCDISF-DDKYI 689 (705)
T ss_pred ceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------ccCcceeeeecc-CceEE
Confidence 3332 4468999999999999999999999999999999998876653 237889999988 77999
Q ss_pred EEEecCCcEEEEec
Q 001157 1087 ALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~ 1100 (1135)
|+|+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999998876
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=8.5e-23 Score=196.44 Aligned_cols=301 Identities=16% Similarity=0.229 Sum_probs=228.2
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 422 (1135)
.|++.|+++...+...+++++|+.||.|.|||++.........+- -...|. +...--.+|+-.|..+.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheeee--ccccCCccceeeeeeeEEeeecCce
Confidence 388999999999976568999999999999999865422110000 000111 11112457999999999999 5667
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCC-ceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
+.+++-|.++++||.++-+... .|+ ..+.|.+-++||-.. +.++|+|..|-.|++.|+++|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 7888899999999999976543 332 456788888888643 44788899999999999999999999999999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEE--------------ecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVD--------------YDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
++.|+|..+ -.|++|+.||.|++||++.. .+... -..|.+.+..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999865 68899999999999999764 33322 2345668999999999999999986 6
Q ss_pred ceEEEEeCCCCceeEE-ee--cccC--C-ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE
Q 001157 567 SHLVEWNESEGAIKRT-YS--GFRK--R-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~-~~--~~~~--~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
..+++|+..+|+-... +- .|.+ . .+. +. +.+...++.--.++.+.++++-++..+..+..| ...+.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEee
Confidence 7799999987753211 11 1111 0 111 22 334445555556799999999999999999988 347899999
Q ss_pred ecCCCEEEEEeCCCcEEEEEC
Q 001157 641 NKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.|+-+...+|..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.8e-22 Score=196.80 Aligned_cols=243 Identities=16% Similarity=0.133 Sum_probs=191.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.....|+.+.|+|.+..|++++.||++++||+....... .+ .|..++.+++|.++.+ +++|+-||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 356789999999999999999999999999999864332 22 4899999999988664 8999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
++... .+..|..+|.+|...+.. ..+++||.|++|++||.+.......+.. ...|.++..+ |+.|+.++.
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTS---- 153 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeec----
Confidence 88754 455799999999998765 6899999999999999987444444443 3377777654 667777664
Q ss_pred CceEEEEeCCCCceeEEe-ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCC-------CC
Q 001157 566 ESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LP 633 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (1135)
+..+.+||+++....... ...-.-.++|+++-|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 778999999976544322 2222226899999999989999999999988766655 34445554432 23
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
+|++++|+|-...+++|+.||.|.+||+.+.+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchh
Confidence 68999999998899999999999999998773
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.6e-23 Score=212.42 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=193.7
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1135)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 34679999999999999999999999999999998877 6679999999999999999 99999999999999874
Q ss_pred --------CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 486 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 486 --------~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
+-++++.|..|.-+|+.+...+.+...+++|+|.|.++++||+..+..+..+. ....+.+++.+|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34567889999999999998877666899999999999999999887766655 356789999999999999
Q ss_pred EEeeCCCCCceEEEEeCCC----------------CceeEEeecccC-CceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 558 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9875 77788776632 334566778766 57999999999999999999999999999999
Q ss_pred eeeEEEeCCCCCCCcCeEEEecC
Q 001157 621 NMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++++++... .++|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888743 347888888664
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=195.61 Aligned_cols=295 Identities=12% Similarity=0.166 Sum_probs=222.7
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.|.++..++++.. -.|+.||+.|. +||+|..||.|.|||+.|...-+ ++.+|-.+|.|+
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence 3455667777665 89999999997 89999999999999999876332 478999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
+||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|.|-..+..+++-- +..-.+-++..+... .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999877633 257799999999977663444443 333455555443211 111
Q ss_pred -CCCCCeE----EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 495 -GHEAPVY----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 495 -~h~~~v~----~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
...+..+ +..| +..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |..
T Consensus 146 ~d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 1111111 1124 4456999999999999999999999988877766 78999999999999998875 888
Q ss_pred EEEEeCCCC-------ce--eEEeecc-cCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCe
Q 001157 569 LVEWNESEG-------AI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 569 i~~wd~~~~-------~~--~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
|+.|+++.- ++ .+.+..- ....-.+++|+.+|.|+++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997621 11 1111110 111345689999999999887 5567999999999999999877643 5678
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.|+|-...+++- ..|.+++|.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988888877 7889999987543
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=205.46 Aligned_cols=296 Identities=16% Similarity=0.230 Sum_probs=222.0
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+...........- .++|.+++-+|+|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~--Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL--PGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc--ccceeeeecCCCc
Confidence 45589999999999999987622111111111 236777765 5568999998765544411111 2368999999999
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+|+.|+..|.+++|.+.+| .++..+.+
T Consensus 94 ~~l~ag~i~g~lYlWelssG-~LL~v~~a--------------------------------------------------- 121 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSG-ILLNVLSA--------------------------------------------------- 121 (476)
T ss_pred eEEEeecccCcEEEEEeccc-cHHHHHHh---------------------------------------------------
Confidence 99999999999999999999 55544433
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeeccc
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 804 (1135)
|-..|+++.|+.||..+++++.||.|.+|.+...
T Consensus 122 ----------------------------------------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 122 ----------------------------------------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ----------------------------------------------hccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 5667999999999999999999999999988532
Q ss_pred CCCCCCcccccccceeccCCCCC--ccccCCCCCCCCCCCeeEEEeecC--CCEEEEEe-CCeEEEEeCCCceEEEEeeC
Q 001157 805 ERNPSGKATANVAPQLWQPPSGT--LMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1135)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~~v~~l~~s~d--g~~la~~s-dg~i~iwd~~~~~~~~~~~~ 879 (1135)
- +..... .....+.+ | .-+|+.+...+. ..+|++++ |.++++||+..+.++.++.
T Consensus 156 v----------------~a~~~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 156 V----------------SADNDHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred c----------------ccccCCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 1 111110 11112333 7 889999988765 45888998 9999999999999998887
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc----------------ceEeEeecCccC--ceEEEEEcCCCCeEEE
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALVS 941 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------------~~~~~~l~~h~~--~i~~l~~s~d~~~l~s 941 (1135)
.+..+++++.+| .++.+.+|+.+|.|.+.++.. +..+..+.||.+ .|+||+++-||.+|++
T Consensus 216 fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 567899999999 899999999999999988653 234566889998 9999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
|+.||.|+|||+.+.+.++ ...... ++|+.+.+.|--+-.+.
T Consensus 295 Gd~dg~VcvWdi~S~Q~iR-----tl~~~k---gpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIR-----TLQTSK---GPVTNLQINPLERGIIL 336 (476)
T ss_pred eCCCCCEEEEecchHHHHH-----HHhhhc---cccceeEeeccccceec
Confidence 9999999999999876433 322111 67888888665443333
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=206.88 Aligned_cols=288 Identities=12% Similarity=0.205 Sum_probs=234.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC-EEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la 424 (1135)
.++|++|.|+|..+ +|.+++.||+++||.+.......-.. +.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence 46899999999998 78889999999999997543211101 222456899999999999 999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
+++.....+.||+.+.+..+ +..+.++. ..+.....+++++ +|+..+..|.|.+....+++.+.+++ ..+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999876543 22444554 3577888999999 89999999999999999999998886 77889999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC------
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1135)
+|+. ++..|++++.+|.|.+||++...++..+...+. .-++++.++++.++++|+. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 458999999999999999999988887766544 5678889999999999974 78899999653
Q ss_pred CceeEEeecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCC-CCCCCcCeEEEecCCCEEEEEeCC
Q 001157 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+++..+..-.. .|+.+.|++|.+.|+.+| .+..+++-.+.+.....-++.. .....|+|++|+|.+.+||.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 456666655554 799999999999998877 6788999999887766666533 234568999999999999999999
Q ss_pred CcEEEEECC
Q 001157 654 NGIKILANS 662 (1135)
Q Consensus 654 g~v~iw~~~ 662 (1135)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999763
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=206.65 Aligned_cols=290 Identities=13% Similarity=0.221 Sum_probs=229.9
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCceEEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~w 572 (1135)
..+.|+++.|||.. ..+++++.||++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ...++.|
T Consensus 212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysy 285 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSY 285 (514)
T ss_pred CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEe
Confidence 35789999999987 8999999999999998875433 445566677999999999999 6666653 6779999
Q ss_pred eCCCCcee--EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE
Q 001157 573 NESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 573 d~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1135)
|+.+.+.. ....++....+.....++++++|+..|..|.|.+....+++.+.+++..+ .|..++|+.|++.|++.
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLAS 362 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEE
Confidence 99987654 34455555578889999999999999999999999999999999998764 58899999999999999
Q ss_pred eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCC
Q 001157 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.+|.|.+||+... .+++.+....
T Consensus 363 ~~~GeV~v~nl~~~-~~~~rf~D~G------------------------------------------------------- 386 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQN-SCLHRFVDDG------------------------------------------------------- 386 (514)
T ss_pred cCCceEEEEecCCc-ceEEEEeecC-------------------------------------------------------
Confidence 99999999999877 4444332210
Q ss_pred cccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCC
Q 001157 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 810 (1135)
.-.-++++.|++|.++++|+..|.|-|||...--..
T Consensus 387 -----------------------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s--- 422 (514)
T KOG2055|consen 387 -----------------------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS--- 422 (514)
T ss_pred -----------------------------------------ccceeeeeecCCCceEEeccCcceEEEeccchhhcc---
Confidence 012357888999999999999999999986431111
Q ss_pred cccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCC---CCe
Q 001157 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAA 884 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~---~~v 884 (1135)
...+++.....- ...|+++.|++|++.||.+| ++.+++-.+.+......+.... +.|
T Consensus 423 -------------~~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v 485 (514)
T KOG2055|consen 423 -------------TNPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV 485 (514)
T ss_pred -------------CCCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence 111122111111 67899999999999999998 4779999999888777776543 568
Q ss_pred eEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 885 ~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
+|++||| .+.++|.|..+|.|.+|.+.
T Consensus 486 tc~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecC-CCceEEeecCCCceeeEeec
Confidence 9999999 89999999999999999864
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-22 Score=194.64 Aligned_cols=253 Identities=13% Similarity=0.251 Sum_probs=196.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
..|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976544 6779999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecCCCC---eEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGN---WCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+.++ ...+|+...|+|......+++- .+..-.+-++........ ...... .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9986 7899999999998775444443 344445555554222211 111111 2233468999999999964 8
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-------eee--EEEeCCCCCCCcCe
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (1135)
|.+.++|..+.+++..++-.....|..+.++..|++|+.-+.|..||.|+...- ++. .++..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999999888766447999999999999999999999999997631 111 11111011123467
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEECCCcchheeeccCcc
Q 001157 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999987765 578999999998 8888887754
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.8e-23 Score=192.26 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=202.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 422 (1135)
|++.|..+...--|+ .|||++.|++|+|+.+..+.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888888888887 58999999999999998765311 1123889999999999987 8999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-e--eEEEecCCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~l~~h~~~ 499 (1135)
||+++.||.|.||.-..+ ...+..+...|...|++++|.|.+-.+.|+.++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999998887 4445557778999999999999988889999999999999998754 2 22345689999
Q ss_pred eEEEEeccCCC-c-----------cEEEEEEcCCeEEEEeCCCCCce--EEecCCCCeEEEEEEcCCC----CEEEEEee
Q 001157 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1135)
Q Consensus 500 v~~l~~~~~~~-~-----------~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 561 (1135)
|++++|.|..- | ..|++|+.|+.|++|+.++.+-+ ..+..|...|+.++|.|.- .+|++++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S- 230 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS- 230 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-
Confidence 99999988621 1 56999999999999999876433 3578899999999999975 3577776
Q ss_pred CCCCCceEEEEeCCC--CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 562 SKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
.|+++.||..+. +....++.......+..+.|+..|+.|+.++.|+.|.+|.-..
T Consensus 231 ---qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 ---QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ---CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 488899997652 1122222222223789999999999999999999999997543
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.4e-20 Score=207.98 Aligned_cols=292 Identities=13% Similarity=0.143 Sum_probs=217.1
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876544 6778998765 555 677789999999999877666555433 35678
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1135)
+|+|+++.+++++. .++.+++||+.+++.+..+.... .+..++|+|+++++++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988877776433 467799999999999988664 5778899988776655
Q ss_pred eCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccc
Q 001157 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1135)
.... .+..++|+|+++.|++++ .++.|++||+.++ +....+..+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~------------------------------- 198 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE------------------------------- 198 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec-------------------------------
Confidence 4322 357899999999886554 5899999999876 222111100
Q ss_pred cCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcc
Q 001157 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 785 (1135)
..+.
T Consensus 199 ----------------------------------------------------------------------------~~~~ 202 (300)
T TIGR03866 199 ----------------------------------------------------------------------------IPGV 202 (300)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred eeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE--eCCeE
Q 001157 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--SGGKV 863 (1135)
Q Consensus 786 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~--sdg~i 863 (1135)
... ......++|+||+++++++ +++.+
T Consensus 203 -----------------------------------------------~~~----~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HPE----AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------ccc----cCCccceEECCCCCEEEEEcCCCCeE
Confidence 000 1122357788999876554 36789
Q ss_pred EEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEE-eCCccEEEEEcccceEeEeecCccCceEEEEEcC
Q 001157 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1135)
Q Consensus 864 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 934 (1135)
.+||+.+++.+..+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++.+++.. ...++++|+|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888876654 445789999999 88888776 56899999999999999998754 5568888875
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.1e-22 Score=218.75 Aligned_cols=269 Identities=20% Similarity=0.230 Sum_probs=208.3
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
|....+.++|.|+|..|++++.||.|++|+.......| ..+.. + ...|.+++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~------~-g~~v~~ia~-- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETIDI------S-GELVSSIAC-- 64 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhhc------c-CceeEEEee--
Confidence 67778999999999999999999999999764321100 01100 3 555666655
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
++.++++|+ +++|.+|.+.++..-..+....-++++++|+. +|.++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 555888888 89999999998776555555567899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC--CCCCceeEEECCCCcEEEE-EECCcEEEEec-cCC
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE 1005 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~ 1005 (1135)
|.|+|.+.+||+.+-||.|++||++++...... ........ ....+..++|+|+|..+++ +.|+.|++|+. ...
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl--~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL--TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhc--ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 999999999999999999999999987754322 11111110 0145678999999555555 89999999999 555
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCE
Q 001157 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1006 ~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 1085 (1135)
....+.... +...+..+.|||+|+|||+++.||.|.|||.++-+. . --...|.+++|.| +.+-
T Consensus 222 ~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--------------~~~~~Vc~~aw~p-~~n~ 284 (933)
T KOG1274|consen 222 LQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--------------EFKRAVCCEAWKP-NANA 284 (933)
T ss_pred eheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c--------------cccceeEEEecCC-CCCe
Confidence 555554433 345599999999999999999999999999998221 1 1236788999999 4444
Q ss_pred E
Q 001157 1086 I 1086 (1135)
Q Consensus 1086 l 1086 (1135)
|
T Consensus 285 i 285 (933)
T KOG1274|consen 285 I 285 (933)
T ss_pred e
Confidence 4
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=5.9e-22 Score=202.72 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=223.9
Q ss_pred CCCCeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCE
Q 001157 345 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~ 422 (1135)
+.+.|++++|+|... .++|+|+..|+|-+||+.+.+...... ..+..|+++|.++.|+| +...
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 678999999999876 799999999999999997444332211 13678999999999999 5568
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee-EEEecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~h~~~v~ 501 (1135)
+.+.+.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||++++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999988642 22223333455678889998887 677777777999999998654 566777999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCce----EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC--
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-- 575 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1135)
+|+++|... .+++|+|.|++.+|||++..... .....|...|.++.|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999876 89999999999999999875543 344567889999999999888888764 7789999983
Q ss_pred --CCceeEEeecccCC----ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC-eEEEecCCC-EE
Q 001157 576 --EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGS-LL 647 (1135)
Q Consensus 576 --~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~-~l 647 (1135)
...+...+...... ......|.|+..++++|-.-..|-|+|-..++.+..+...... .|. -..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 23333333221110 2334679999999999998899999999999988876544332 333 357999877 45
Q ss_pred EEEeCCCcEEEEECC
Q 001157 648 AVTTSDNGIKILANS 662 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~ 662 (1135)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555567888888643
No 139
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=9.8e-22 Score=208.70 Aligned_cols=273 Identities=12% Similarity=0.138 Sum_probs=204.9
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|++.|.|++|+.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999999776655 56899999999988875 889999999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.|..|.+|+-+-...++ -.|.+.|.|+.|+|-.. .|+||+-. ..-+|........ .. .....+.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hh-hhheeEEEeee--
Confidence 99999999976544332 26999999999999988 68888743 4678886544322 21 13455666677
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEecC---CCCeEEEEEEcCCCC-----EEEEEeeCCCCCceEEEEeCCCCce
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
+.||++++.|-.||+|.+-+- ++++...+.. .+.+|.+++|+|... .+++.. -..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D----W~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD----WGQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe----ccceeEEEEec-cee
Confidence 556799999999999998864 3444444433 566999999999643 233332 13345555443 444
Q ss_pred eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
+..-+.-.- ...|+.+.++|.+++.||.|+.+.+|.- .|-.+.++.... ..|+.++..|+++.++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 332222111 4567899999999999999999999964 456666665433 379999999999999999999999999
Q ss_pred ECCC
Q 001157 660 ANSD 663 (1135)
Q Consensus 660 ~~~~ 663 (1135)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8743
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.7e-22 Score=205.10 Aligned_cols=252 Identities=17% Similarity=0.270 Sum_probs=203.0
Q ss_pred cccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc-------eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 405 NDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
-.|.+.|+.+.+-|.. ..+|+.+..+.|.|||..+-.. ......+.+|.+.-.+++|++.... .|++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 3599999999999955 4667778889999999875332 2233478899998889999998776 89999999
Q ss_pred CcEEEEEcCCCe-------eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC--CCCceEEecCCCCeEEEE
Q 001157 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~ 547 (1135)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997533 2456789999999999999865 799999999999999999 455566778899999999
Q ss_pred EEcCCCCEEE-EEeeCCCCCceEEEEeCCCC-ceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeee-
Q 001157 548 AYSADGTRLF-SCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1135)
Q Consensus 548 ~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1135)
+|+|-+.+++ +++ .|++|.+||+++. +++.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S----~D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGS----ADKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEecc----CCCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999776655 554 4888999999864 47788999888 89999999977 56677889999999998642211
Q ss_pred -----------EEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEEEEECCC
Q 001157 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~ 663 (1135)
..+...+|...|..+.|+|+.. .+++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1234445667899999999665 577888999999998764
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-23 Score=226.76 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=213.9
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588889999987788999999999999999988765554 6789999999999999988 8999999999999999
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+.++.+++|.+|...+.++.|+|.+ .+.++|+.|+.+++||.+..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999977 89999999999999999999999999999999999999999999999874
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
|..+++||...|+....|..|.. .+.++.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78899999999999999999887 8888999999888889999999999999998888776654 4579999999999
Q ss_pred CEEEEEeCC
Q 001157 645 SLLAVTTSD 653 (1135)
Q Consensus 645 ~~l~~~~~d 653 (1135)
..+++|...
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 999888654
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=6.9e-22 Score=210.09 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=210.5
Q ss_pred cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCe
Q 001157 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~ 862 (1135)
.+.|+.+..+|.|.++|.....+.+ +..+ +. .. ..| ...|..+.|.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~-lk-~~--~aH-~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRL---------------EERQ-LK-KP--LAH-KNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcch---------------hhhh-hc-cc--ccc-cceeEeeccCCCceeEEEccCCce
Confidence 4557788888999999876433311 1000 11 11 227 89999999999667888887 899
Q ss_pred EEEEeCCCceEEEE--eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-------------------------
Q 001157 863 VSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------------------- 915 (1135)
Q Consensus 863 i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------------------------- 915 (1135)
+++||+.+.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999975221
Q ss_pred --EeEeecCccCceEE---EEEcCCCCeEEEEcC-CCcEEEEeCCCcccccc---eeeecCCCCCCCCCCceeEEECCCC
Q 001157 916 --VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 916 --~~~~l~~h~~~i~~---l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
.+..-.+|...|.+ +.+..|...|||+|. |+.|+|||+........ ........+.....++.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11123345555555 566689999999998 99999999987442111 1111222222223567778888888
Q ss_pred cEEEE-EECCcEEEEeccCCcccccCCCCCCC-CC-eEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc
Q 001157 987 THLLV-VHESQISVYDSKLECSRSWSPKDALP-AP-ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1135)
Q Consensus 987 ~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~-~~-i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~ 1063 (1135)
.+|++ +.|+.|..|++....+.-.....++. .. -..-..|||+.+|++|+.|..+++|.+.+.+.- .
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~----------~ 353 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP----------P 353 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC----------h
Confidence 99888 89999999999333322221111111 11 112346899999999999999999999986543 2
Q ss_pred cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1064 YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1064 ~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
...-||...|++++|.|..-.-++++++|.++++|++..+-
T Consensus 354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 33459999999999999776778888999999999996554
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.5e-20 Score=207.59 Aligned_cols=276 Identities=10% Similarity=0.070 Sum_probs=205.3
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-a~~~~dg~i~iwd~~~ 439 (1135)
++++++.|+.|++||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788899999999999998875542 2333 346789999999977 5667889999999998
Q ss_pred CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc
Q 001157 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~ 519 (1135)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76554 343333 3568899999983 345556789999999999888877753 3446788998755 78888877
Q ss_pred CC-eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC------Ccee
Q 001157 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1135)
Q Consensus 520 dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1135)
++ .+.+||..+......... .....+++|+|+++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 567789887655443332 334578999999998876542 467899999999988776653211 0234
Q ss_pred EEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE-eCCCcEEEEECCCcchheee
Q 001157 593 VVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~ 670 (1135)
.++|+|++++++.+ +.++.+.+||..+++.+..+... ..+.+++|+|+|++|+++ ..++.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 58899999986554 46778999999998877665422 257899999999999886 45899999999988 55555
Q ss_pred cc
Q 001157 671 LE 672 (1135)
Q Consensus 671 ~~ 672 (1135)
++
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 54
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.2e-21 Score=204.41 Aligned_cols=317 Identities=16% Similarity=0.219 Sum_probs=230.2
Q ss_pred eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEE
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~w 526 (1135)
..+.||.+.|.++...|.|. +|++|+.||+|+||.+.+|++++++. ..+.|.+++|+|.++...|+.+-. ..+.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 36779999999999999999 89999999999999999999999886 567899999999987555555444 445555
Q ss_pred eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCCCCE
Q 001157 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
+..-+..+... +....|+++-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.|
T Consensus 470 np~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 54333211110 1111222221111234567778654211 1233333444 8999999999999
Q ss_pred EEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccC
Q 001157 603 FLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 603 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
|++.. ....|.|.++.......-+.... +.|.++.|+|...+|++++. ..|+|||+... .+++.+..
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~t------ 605 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLLT------ 605 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHhc------
Confidence 99965 44678999998776665554332 36899999999988888765 58999998764 33332211
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
+
T Consensus 606 ---------------------------------------------------------------------------g---- 606 (733)
T KOG0650|consen 606 ---------------------------------------------------------------------------G---- 606 (733)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC-ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-----
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 912 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~----- 912 (1135)
...|..++++|.|.-|+.|+ |+.+..||++- .+..+++..|...+++|+|++ .-.++++|+.||++.|+.-.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 22355677777777777777 78888888874 467778888999999999999 88899999999999998522
Q ss_pred -cc---eEeEeecCccCc----eEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 913 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 913 -~~---~~~~~l~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
.+ -++..+++|... |....|+|...+|.|++.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 245678899776 8899999999999999999999998
No 145
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=5.1e-21 Score=184.31 Aligned_cols=318 Identities=15% Similarity=0.182 Sum_probs=227.2
Q ss_pred CCCCceEEEEEeC-CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 770 IAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 770 ~~~~~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
.|.+.|.++.+.+ .|+++++|+.||.|.+||++..........+.. ....+. ......| ...|..+.|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---------~~c~v~-~~h~~~H-ky~iss~~W 109 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---------HKCIVA-KQHENGH-KYAISSAIW 109 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---------eeeecc-ccCCccc-eeeeeeeEE
Confidence 4778899999987 689999999999999999975432111111111 000111 1122347 889999999
Q ss_pred ec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC--CCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 849 SK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 849 s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
-| |.-.+.+++ |.+++|||..+.+....|+ -.+.|.+-++||- ...++|+|..|-.|++-|+.+|.+-..+.||.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 88 555677777 9999999999998888887 4567777777772 23589999999999999999999999999999
Q ss_pred CceEEEEEcCCCCe-EEEEcCCCcEEEEeCCCcccccceeeecCC--------CCCCCCCCceeEEECCCCcEEEE-EEC
Q 001157 925 NRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--------GRQSPLVGETKVQFHNDQTHLLV-VHE 994 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~fspdg~~l~~-~~d 994 (1135)
+.|.++.|+|...+ |+||+.||.|++||+..... +..++...+ ......+.+..++|+.||.++++ +.|
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 99999999998876 88999999999999975311 011111111 11112267889999999999999 789
Q ss_pred CcEEEEec-cCCcc-cccCCCCCCCCCe---EEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCC
Q 001157 995 SQISVYDS-KLECS-RSWSPKDALPAPI---SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN 1069 (1135)
Q Consensus 995 ~~i~vwd~-~~~~~-~~~~~~~~h~~~i---~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
..+++|+. ++..- +.+.+ .-|...+ .-+. +.+...++---.++.+.++++-.|..+..+. +|
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-----------~h 334 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGP-IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-----------TH 334 (397)
T ss_pred cceEEeecccCccccccccc-ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-----------cc
Confidence 99999999 44332 22211 1111111 1122 3344444444456899999999999998886 66
Q ss_pred CCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001157 1070 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1119 (1135)
Q Consensus 1070 ~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~~~ 1119 (1135)
-..+.+.+|.| +-....+|..|+.|..|-.. ...|+|.+.+...
T Consensus 335 ~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p~-----l~~pt~~~d~~t~ 378 (397)
T KOG4283|consen 335 LKRINCAAYRP-DFEQCFTGDMNGNIYMWSPA-----LKSPTKISDLETR 378 (397)
T ss_pred cceeeEEeecC-chhhhhccccCCcccccccc-----ccCCccccccccc
Confidence 67888889988 77789999999999999872 3445665554443
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.7e-20 Score=180.02 Aligned_cols=256 Identities=13% Similarity=0.156 Sum_probs=193.4
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCC----CceEEEEeeCCCCCeeEEEEeC-CCCcEEEEEeCCccEEEEEc
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFHP-QDNNIIAIGMEDSSVQIYNV 911 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~sp-~~~~~lasg~~dg~v~iwd~ 911 (1135)
| ..-|.++.|.+-|+++|+|+ |++|+|||.. +..+....+.|.+.|..+.|.+ .=|+.+|+++.|+++.||.=
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 6 78899999999999999999 9999999964 3467778899999999999965 35899999999999999975
Q ss_pred c---------cceEeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeee-------cCCCCCCC
Q 001157 912 R---------VDEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQ-------APAGRQSP 973 (1135)
Q Consensus 912 ~---------~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~ 973 (1135)
. ......++....+.|+.+.|.|. |-.||+++.||.||||+.-..-.+..-.++ .+.+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~-- 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN-- 168 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc--
Confidence 2 12344567777888999999986 568999999999999987653222211111 111111
Q ss_pred CCCceeEEECCC---CcEEEEEECC------cEEEEec--cCCcccccCCCCCCCCCeEEEEEccC----CCEEEEEecC
Q 001157 974 LVGETKVQFHND---QTHLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCD 1038 (1135)
Q Consensus 974 ~~~v~~~~fspd---g~~l~~~~d~------~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d----g~~l~s~~~d 1038 (1135)
...-.++.|+|. ..+|+++.|. .+.||.. .++.........+|..+|+.++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 145678888875 4577887665 8999988 44343444444578999999999996 3479999999
Q ss_pred CcEEEEecCCCc------------eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1039 GAIGVFDAETLR------------FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1039 g~V~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
| |+||.+.... .+..+.. ........|...|-.+.|.- .|.+|++++.||+||+|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v---~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPV---EKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccce---EEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 9 9999998421 1222221 11233468999999999998 88999999999999999875
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=193.31 Aligned_cols=253 Identities=12% Similarity=0.148 Sum_probs=194.2
Q ss_pred eeEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCCceeeeeE------------------eecCCCCeeEEEEecCC
Q 001157 411 VNRCVWGP-------DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPN 465 (1135)
Q Consensus 411 V~~v~~sp-------dg~~la~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~d~ 465 (1135)
-.|++|.. -|+++|.|+.|..|.|||+.--..+.+... ..+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999864322222112 23699999999999887
Q ss_pred CceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEE
Q 001157 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 466 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
+. +||+||.|.+|++||+.+|++..++..|...|.++.|+|... .+|++|+.|++|.+.|.+........-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 76 899999999999999999999999999999999999998754 8999999999999999985333222222345788
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeee
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
.++|.|.....+.++. .+|+++-+|++. ++++.++..|.+ .|.++++++.- ..+++++.|+.|++|++..-...
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998877666654 489999999986 489999999988 99999999866 46777899999999998764433
Q ss_pred EEEeCCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcchhee
Q 001157 624 TTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
......-......|.++.|+- -.++.|+..+.+++||+.+.....+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 222211112235566777754 4677888888999999988744333
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-21 Score=212.29 Aligned_cols=245 Identities=12% Similarity=0.212 Sum_probs=197.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCC---ccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
.+..|.|+..-..+||+++..|.|.+||+.. .+.+ ..+..|+..|.++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence 5667888876667999999999999999986 2222 24788999999999998 46689
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCCCCCeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h~~~v~~ 502 (1135)
++|+.||+|++||++..+... ++.+....|..|.|+|.... .++++.+.|.+++||++. .++...+.+|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876554 56677889999999997654 899999999999999986 4567788999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-CCeEEEEEEcCCCCEE-EEEeeCCCCCceEEEEeCCCCc-e
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGA-I 579 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~-~ 579 (1135)
+.|+|+. .+|+||+.|++|+|||+.+.+.......+ ..++.+++|-|+..+. ++++. -.+-.|+|||++..- +
T Consensus 226 ~nwhPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 9999954 89999999999999999876665544443 4589999999988764 45543 246779999998654 4
Q ss_pred eEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCC
Q 001157 580 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
..++..|.+ .++.++|.. |...+.+++.||+|..-..++.
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 567788877 888899976 4467788889998876655544
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.1e-21 Score=209.85 Aligned_cols=297 Identities=11% Similarity=0.178 Sum_probs=227.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la 424 (1135)
+...+++...++-..+++.| ...+.||.+....... .+.+..-. -..-.-.+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 45677888888877666555 3477888776543221 11111100 001112355677875 678999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+++..|.|.+||+.....-+....|..|...|+++.|++-... +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873322333478899999999999998776 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
|+|.. +..++++...|.+++||++... ....+..|.++|.++.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99975 5899999999999999998654 45688899999999999999999999985 788999999877765555
Q ss_pred ecccCCceeEEEEeCCCCE-EEEEe--cCCeEEEEECCCC-eeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEE
Q 001157 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 658 (1135)
.-+...++.++.|-|...+ |++++ .|-.|+|||++.. -+..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 5555558999999998865 44444 7889999999754 344555555 44788899976 5667888999988765
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
-...+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 554444
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1e-20 Score=201.32 Aligned_cols=291 Identities=18% Similarity=0.219 Sum_probs=211.8
Q ss_pred EEEeec--CCCeEEEEEeCCCcEEEEEcCCcccc-ccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 351 ~~~fsp--dg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
++.|++ +.+++||.+..||.|.++|....... ....|+ ....|.+.|..+.|-|....|++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEcc
Confidence 355554 55679999999999999998754322 111111 1456999999999999777999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-------------------
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------------------- 488 (1135)
.|.++++||+++++..... .+.||.+.|.+++|.+++.. .+++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998876533 46799999999999999886 89999999999999986322
Q ss_pred --------eEEEecCCCCCeEE---EEeccCCCccEEEEEEc-CCeEEEEeCCCCCceEE--------ecCC---CCeEE
Q 001157 489 --------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWCT 545 (1135)
Q Consensus 489 --------~~~~l~~h~~~v~~---l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v~ 545 (1135)
.+.....+...|.+ +.+..+ ...|++++. |+.|+|||++....... +..+ ...+.
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01112234444444 333333 378999888 99999999987554332 2222 23678
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC--ceeEEeecccCCcee-EEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++.....|.+|++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888999887764 778999999753 345555555432222 234789999999999999999999988654
Q ss_pred eEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
-..+. .++...|.+++|.| .-.-++++++|.++++|++.++
T Consensus 352 ~~~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred Chhhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 33322 13345789999988 3334666699999999999776
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-20 Score=197.30 Aligned_cols=292 Identities=14% Similarity=0.206 Sum_probs=223.7
Q ss_pred ceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+..+-..+. |.+.|.|+...|.|. +||+|+.||+|+||.+.+|.++.+.. ..+.|.||
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~~v 447 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIRSV 447 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeEEE
Confidence 344444444 999999999999997 79999999999999999999987421 34579999
Q ss_pred EEcCCCC--EEEEEeCCCeEEE---------------------------------EEcCCCCcee-eeeEeecCCCCeeE
Q 001157 415 VWGPDGL--MLGVAFSKHIVHL---------------------------------YTYNPTGELR-QHLEIDAHVGGVND 458 (1135)
Q Consensus 415 ~~spdg~--~la~~~~dg~i~i---------------------------------wd~~~~~~~~-~~~~~~~h~~~v~~ 458 (1135)
+|+|.++ .||++-... +.| |.-...+... .....-.|...|..
T Consensus 448 aw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred EecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 9999776 444443332 333 3222111100 01123358889999
Q ss_pred EEEecCCCceEEEEEcCC---CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 459 IAFAHPNKQLCIVTCGDD---KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d---~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
+.|+..|. ||++...+ ..|.|+++..++....|+...+.|.++.|+|.. .+|+.++ ...|++||+.....+.
T Consensus 527 vtWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaT-q~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 527 VTWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVAT-QRSVRIYDLSKQELVK 601 (733)
T ss_pred eeeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEe-ccceEEEehhHHHHHH
Confidence 99999999 88887553 589999998888777787778889999999987 5665554 5789999998877777
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
.+.....+|..++.+|.|..|+.++. ++.+..+|+.-+ ++.+++..|.. .++.++|++.-..+++|+.||++.|
T Consensus 602 kL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 602 KLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred HHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEE
Confidence 77777789999999999999999975 778999999754 56777777777 8999999999999999999999999
Q ss_pred EECCC------C---eeeEEEeCCCCC--CCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 615 WDMDN------M---NMLTTVDADGGL--PASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 615 wd~~~------~---~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
+.-.- . -++..+.+|... ..|..+.|+|...+|++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 86321 1 134555555332 236778899999999999999999998
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=5.7e-20 Score=185.72 Aligned_cols=303 Identities=17% Similarity=0.219 Sum_probs=222.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
..+|..+.|.+++...+|+|+.|..|+||.+..+..-... ........+..|...|++|.|+|+|..||+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS 82 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLAS 82 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeeee
Confidence 5689999999988767999999999999999766433210 011123357899999999999999999999
Q ss_pred EeCCCeEEEEEcC--------C-----CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 426 AFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 426 ~~~dg~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|..+..
T Consensus 83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEee
Confidence 9999999999876 3 222344557789999999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-------------------CC----CCeEEEEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------AP----GNWCTMMAY 549 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~----~~~v~~~~~ 549 (1135)
+.+|...|..++|.|-+ +++++-+.|...+.+.+...+...... .| ..-...++|
T Consensus 161 ~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred ccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 99999999999998876 899999999877766654332221110 01 113457789
Q ss_pred cCCCCEEEEEeeCCCC-----CceEEEEeCCC-CceeEEeecccCCceeEEEEeC-----------------CCCEEEEE
Q 001157 550 SADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT-----------------TRNRFLAA 606 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~-----------------~~~~l~~~ 606 (1135)
+|||..+++....-+- -+..++++-.. .++...+.+... ....+.|+| --+.+++.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 9999999865421111 22344554332 233444444333 344444443 11233343
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.....|++||.++..++..+..- |...++.++|++||..|+..+.||...+..++..
T Consensus 318 At~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 318 ATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 45668999999998888877532 3458999999999999999999999888877665
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=9.9e-21 Score=194.83 Aligned_cols=293 Identities=17% Similarity=0.256 Sum_probs=216.1
Q ss_pred cccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcce-eeeecccceeEEEeecccCCCCCCcccccc
Q 001157 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
..++.....+++||+............+ ..-.+.++.|+..... ++..++|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 4455566789999998765444333322 1223778888877642 33345577888885321
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 895 (1135)
.++++......+ ...-.|++......|+++|+ .++|+|||+....+.+.+++|...|+++.|.- ...
T Consensus 67 -------~~~~Vp~~~k~~----gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~De 134 (673)
T KOG4378|consen 67 -------KTPEVPRVRKLT----GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDE 134 (673)
T ss_pred -------CCCccceeeccc----cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccc
Confidence 122222111111 23445565555668999998 89999999997777788999999999999998 778
Q ss_pred EEEEEeCCccEEEEEcccceEeEeecCc-cCceEEEEEcCCCCe-EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001157 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 896 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
+||+++..|.|.|..+.++.....|... ...|.-|.|||..++ |.+++.+|.|.+||+..... .......|.
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs-- 208 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS-- 208 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc--
Confidence 9999999999999999999887777644 344668999998865 67899999999999987543 233344455
Q ss_pred CCCceeEEECCCCcEEEE--EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 974 LVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
.+...++|+|.+..|++ |.|+.|.+||+..+........ ..|.++++|+++|.+|++|+..|.|+.||++..+.
T Consensus 209 -AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 209 -APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred -CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 67889999999887776 6899999999944433332222 67899999999999999999999999999986543
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1080 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 1080 (1135)
|....+.|+..|++++|-|
T Consensus 285 ----------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 285 ----------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred ----------CceEeeecccceeEEEeee
Confidence 3334468889999999988
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=1.7e-19 Score=191.86 Aligned_cols=414 Identities=14% Similarity=0.166 Sum_probs=284.1
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|++++|+.||+.+++|+.|..|.+|+..-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999988775 45699999999999999999998 999999999999999999999999998653322
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+.- .|...|.|+.|+|-...|++++-. ..-+|..... ... .
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~----K----------------------------- 128 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVS----K----------------------------- 128 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHH----h-----------------------------
Confidence 221 334579999999998899888754 4556754332 000 0
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 782 (1135)
.....++.+.+|..
T Consensus 129 ------------------------------------------------------------------~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 129 ------------------------------------------------------------------HKSSSRIICCSWTN 142 (1081)
T ss_pred ------------------------------------------------------------------hhhheeEEEeeecC
Confidence 00235688999999
Q ss_pred CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC-----CEEEE
Q 001157 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMS 857 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg-----~~la~ 857 (1135)
||++++.|-.+|+|.+-+-. |+.-....+..+. +++|.+++|+|.. ..+++
T Consensus 143 DGqylalG~~nGTIsiRNk~-----------------------gEek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKN-----------------------GEEKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred CCcEEEEeccCceEEeecCC-----------------------CCcceEEeCCCCC-CCCceEEEecCCCCCCccceEEE
Confidence 99999999999999986422 1111111111123 7899999999954 35666
Q ss_pred Ee-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 858 AS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 858 ~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
.+ +.++.++.+. |+.+..-+.-.-...|+.+-+ +|.++..|+.|+.+.+|. ..|-.+.++-....-|+.++..|++
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC
Confidence 66 6677777764 455443333345567899999 899999999999999997 4566677777677889999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCccc-------------ccceeeec-------------------------------------
Q 001157 937 NALVSSGADAQLCMWSIDKWEK-------------LKSRFIQA------------------------------------- 966 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~~-------------~~~~~~~~------------------------------------- 966 (1135)
++++.|+.||+|.-|++..... +...+++.
T Consensus 276 Q~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYe 355 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYE 355 (1081)
T ss_pred ceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEe
Confidence 9999999999999998753210 00000000
Q ss_pred -CCCCCCCC-CC-----ceeEEEC---CCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEc--cCC-CEEE
Q 001157 967 -PAGRQSPL-VG-----ETKVQFH---NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS--CDG-LLVY 1033 (1135)
Q Consensus 967 -~~~~~~~~-~~-----v~~~~fs---pdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s--~dg-~~l~ 1033 (1135)
..+...+- .. ...+.+| --+..++.+.+..+..+|..+-..+.|... +-|.-+... |-| .-|+
T Consensus 356 l~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~----S~iRYikV~GGP~gREgL~ 431 (1081)
T KOG1538|consen 356 LYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQME----SLIRYIKVIGGPPGREGLL 431 (1081)
T ss_pred ccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHH----HHHHhhhhhcCCCCcceeE
Confidence 00000000 00 0000010 124556666788888888866665555431 222222222 333 3588
Q ss_pred EEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCC
Q 001157 1034 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTP 1111 (1135)
Q Consensus 1034 s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~ 1111 (1135)
.|..||.|.-.=+++.-++-.. .....|.|+..+. ....||+..+.++..+.|+.+++.-|+.|.
T Consensus 432 vGlknGqV~kiF~dN~~PiLl~------------~~~tAvrClDINA-~R~kLAvVDD~~~c~v~DI~t~elL~QEpg 496 (1081)
T KOG1538|consen 432 VGLKNGQVLKIFVDNLFPILLL------------KQATAVRCLDINA-SRKKLAVVDDNDTCLVYDIDTKELLFQEPG 496 (1081)
T ss_pred EEecCCcEEEEEecCCchhhee------------cccceeEEeeccC-CcceEEEEccCCeEEEEEccCCceEeecCC
Confidence 8989998765545544333211 2335677777776 667899999999999999999998888774
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-19 Score=174.72 Aligned_cols=255 Identities=13% Similarity=0.193 Sum_probs=193.1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
-.+|.+-|.|+.|.+-|+++|+|+.|++++|||.+.. .........+.|.+.|..+.|.+- |+ .+|+++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4579999999999999999999999999999996443 335555577889999999999764 56 899999999999
Q ss_pred EEEcCC------C---eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE------Eec-------
Q 001157 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------DYD------- 538 (1135)
Q Consensus 481 iwd~~~------~---~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~------~~~------- 538 (1135)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|||+.-...... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998521 1 123466778899999999999888999999999999999765432221 111
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEeeC-CCCCceEEEEeCCCC----ceeEEeecccCCceeEEEEeCCC----CEEEEE
Q 001157 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~ 606 (1135)
.+.....|+.|+|. ..+|+.++.+ ....+.++||....+ ..+.++.+|.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999874 3456766532 112346777765432 34556777777 99999999964 468889
Q ss_pred ecCCeEEEEECCCCe-----------------eeEEEe-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+.|| |+||.+.... .+..+. ..+|...|..+.|+-.|..|++.+.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 33456689999999999999999999999999763
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1e-19 Score=178.53 Aligned_cols=289 Identities=17% Similarity=0.275 Sum_probs=213.6
Q ss_pred CCCCeeEEEeec----CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 345 h~~~V~~~~fsp----dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
|+.+|..++|++ +...++|+.+ ...+.+|+......+. .++...-..|.....-++|+-|.
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 778999999985 3444666655 4588899876433111 11111123477888889998753
Q ss_pred ----CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe---
Q 001157 421 ----LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 421 ----~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--- 493 (1135)
.+||+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|..|++|++++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 489999999999999999988766 67899999999999999877 8999999999999999999999876
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE----------------------------EecCCCCeEE
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------DYDAPGNWCT 545 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------------------------~~~~~~~~v~ 545 (1135)
.+|.+.|.++.|++++ .++++++.|.++++|++...+... +-..|...|.
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 5699999999998766 799999999999999987322111 1122334455
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCce-------------eEEeecccCCceeE--EEEeCCCCEEEEEecC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI-------------KRTYSGFRKRSLGV--VQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~d 609 (1135)
|+.|- |+++++-+ .++.|..|... -++. +..+....- .+.- .+|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 55554 46677654 36689999872 1111 122222111 3443 4556777899999999
Q ss_pred CeEEEEECCCCee--eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 610 FQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 610 g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|.|++||++..++ ..++........|...+|+.||.+|+..++|++|.-||.
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999998765 334444445568999999999999999999999999985
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-21 Score=211.01 Aligned_cols=233 Identities=11% Similarity=0.220 Sum_probs=208.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+. .+.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 667888888866665 88999999999999986544332 2689999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.+|+|++||++.++.++ +|.+|...+..+.|+|-+. +.++|+.|+.+++||.+...+.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 7889999999999999999 889999999999999998889999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|++ .++++++.|.++++||...++....+..|...+..+.|+|..-.++.|+. ++++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98865 89999999999999999999999999999999999999998888888875 8889999999998888877
Q ss_pred cccCCceeEEEEeCCCCEEEEEecC
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1135)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7755 89999999999998888644
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.8e-21 Score=218.55 Aligned_cols=252 Identities=15% Similarity=0.267 Sum_probs=207.0
Q ss_pred cCCCeeEEEEcCCCCE----EEEEeCCCeEEEEEcCC---CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~----la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
.....+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.... +||+|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3456889999998876 88889999999999876 3444444466789999999999998776 89999999999
Q ss_pred EEEEcCCCeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCE
Q 001157 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 555 (1135)
.|||+..-+.-.++. .....|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998755444442 24578999999765 347899999999999999999988887766554 5789999998764
Q ss_pred -EEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCC
Q 001157 556 -LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 -l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
+++++ +.|+.-.|.+||++. ..+++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+
T Consensus 221 ql~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~-- 296 (1049)
T KOG0307|consen 221 QLLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG-- 296 (1049)
T ss_pred eeeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--
Confidence 44554 446788999999885 457788888877 89999999977 788889999999999999999999998643
Q ss_pred CCcCeEEEecCCC-EEEEEeCCCcEEEEECCCc
Q 001157 633 PASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.+..+.|+|... .+++++.||.|.|+.+.+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 3789999999655 8889999999999998765
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.2e-19 Score=177.95 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=209.3
Q ss_pred CCCceEEEEEeC----CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 771 AASKVVRLIYTN----SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 771 ~~~~i~~~~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
|..+|..++|.+ +...+++..+.+.+.+|...... .++ .+.. .....| +.....+
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~ir--------~lq~-y~D~d~-~Esfytc 95 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GIR--------LLQS-YADEDH-DESFYTC 95 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------cee--------eeee-ccCCCC-CcceEEE
Confidence 567788888873 33445555566688888765321 001 1111 111124 6667777
Q ss_pred EeecCC----CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee-
Q 001157 847 ALSKND----SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL- 920 (1135)
Q Consensus 847 ~~s~dg----~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 920 (1135)
+|+-|- .++|+|+ -|.|+|.|+.++++...+.+|...|..+.|.|+..+++++++.|.+|++|++++..++..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 776543 3677777 7999999999999999999999999999999988899999999999999999999999886
Q ss_pred --cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeee---cCCCCC-----------------CCCCCce
Q 001157 921 --KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ---APAGRQ-----------------SPLVGET 978 (1135)
Q Consensus 921 --~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~---~~~~~~-----------------~~~~~v~ 978 (1135)
.||.+.|.++.|+++|.+|+|+|.|.+|++|++...+........ ..++.. .....|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 689999999999999999999999999999999854321111000 000000 0001222
Q ss_pred eEEECCCCcEEEE-EECCcEEEEec-cCCcc-cccCCC----------CCCCCCeEEEEEc--cCCCEEEEEecCCcEEE
Q 001157 979 KVQFHNDQTHLLV-VHESQISVYDS-KLECS-RSWSPK----------DALPAPISSAIYS--CDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 979 ~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~-~~~~~~----------~~h~~~i~~~~~s--~dg~~l~s~~~dg~V~v 1043 (1135)
++.|- |.++++ +.++.|..|.. +.+.- ....+. .--...|+-+.|+ +-++.||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22222 567777 77889999987 32211 111111 1114556666655 66889999999999999
Q ss_pred EecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1044 FDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1044 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
||++..++...- ....+.....|...+|+- |+.+|+..++|++|.-||.-
T Consensus 334 wdL~~~ep~~~t-------tl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCT-------TLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCc-------eEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999987764211 121223446777888988 88999999999999999864
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=4e-17 Score=191.44 Aligned_cols=372 Identities=23% Similarity=0.422 Sum_probs=282.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEeecCC-CCeeEEEE-ecCCCceEEEE-EcCCCcE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~-~~v~~l~~-s~d~~~~~l~s-~~~d~~i 479 (1135)
...|...+.++.+.+++..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999876 333 444433 36777777 777763 3444 4459999
Q ss_pred EEEEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 480 ~iwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
.+||... ......+..|...|..++|+|.+ ..+++++. |+.+++|+.........+..|...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888899999999999998876 57888875 99999999998778888888999999999999998444
Q ss_pred EEeeCCCCCceEEEEeCCCCceeE-EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee-eEEEeCCCCCCCc
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPAS 635 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 635 (1135)
.+. ..++.|++||...+.... .+.+|.. .. ...|++++.++++++.|+.+++|+...... +..+..+ ...+
T Consensus 215 ~~~---~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v 287 (466)
T COG2319 215 ASG---SSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSV 287 (466)
T ss_pred EEe---cCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccE
Confidence 432 247789999998888887 6888776 33 338999998899999999999999987665 4444333 4578
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
.++.|.|++..+++++.|+.+.+|+..+.. ......
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee-------------------------------------------
Confidence 999999988888888889889999766541 110000
Q ss_pred CCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccce
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 795 (1135)
.
T Consensus 324 ------------------------------------------------------------------~------------- 324 (466)
T COG2319 324 ------------------------------------------------------------------L------------- 324 (466)
T ss_pred ------------------------------------------------------------------e-------------
Confidence 0
Q ss_pred eEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE-e-CCeEEEEeCCCceE
Q 001157 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKV 873 (1135)
Q Consensus 796 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~-s-dg~i~iwd~~~~~~ 873 (1135)
..| ...+..+.+.+++..++.+ . |+.+.+|++.....
T Consensus 325 ----------------------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 363 (466)
T COG2319 325 ----------------------------------------KGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363 (466)
T ss_pred ----------------------------------------ccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce
Confidence 002 3334555552222444444 3 67777788877663
Q ss_pred EEEeeCCCCCeeEEEEeCCCCcEEEE-EeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 874 MTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 874 ~~~~~~~~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
....... ..+..+.+++ + ..+.. +..++.+.+|+............+...+....+++++..+++++.++.+++|+
T Consensus 364 ~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 364 LKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred eEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 2333222 2288999998 7 55554 88999999999999888777766547799999999999999999999999999
Q ss_pred CCC
Q 001157 953 IDK 955 (1135)
Q Consensus 953 ~~~ 955 (1135)
..+
T Consensus 441 ~~~ 443 (466)
T COG2319 441 LKT 443 (466)
T ss_pred ccC
Confidence 987
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.9e-19 Score=174.78 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=208.8
Q ss_pred eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc-------CCCC
Q 001157 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDGL 421 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pdg~ 421 (1135)
...+.|||||. .+.+-+.|..+.+|++...-.-...... ...+....+-......|...+|- |+..
T Consensus 52 ~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45789999998 5667789999999998532110000000 00000111111234457777775 6788
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCC---CeeEEEEecCCCceEEEEEcCCCcEEEEEc-CCCeeE--EE-e-
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YT-F- 493 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~-l- 493 (1135)
++|+.+.+.-|++||.-+|+.-.... .-.|.. ...+++|+|||. .|+.| ..+.|+++|+ +.|+.- .. +
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999987543221 223443 346899999999 56554 5889999999 455432 11 1
Q ss_pred ---cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 494 ---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 ---~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
.+..+-|.+++|+|... ..++.++...++-+|.-...+....+.+|.+.|+.++|.++|+.|+++.. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 23467788999999864 68999999999999998888999999999999999999999999999875 466799
Q ss_pred EEeCCC-CceeEEeecccCCceeE--EEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 571 EWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 571 ~wd~~~-~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
.||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+++ +..+..+..+. ..++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccce
Confidence 999985 55666666664422222 45678999999999999999999998 66666666554 37899999999888
Q ss_pred EEEEeCC
Q 001157 647 LAVTTSD 653 (1135)
Q Consensus 647 l~~~~~d 653 (1135)
+|+++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.5e-16 Score=186.45 Aligned_cols=289 Identities=25% Similarity=0.433 Sum_probs=220.1
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc-ccccccceeecccccccccccccccccC-CCeeEEEE-cCCC
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPDG 420 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-spdg 420 (1135)
.|...|.++.|.+.+. .++.++.|+.+.+|+...+. .+.. +.++. ..+..+.+ ++++
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPDG 122 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCCc
Confidence 4788999999999998 67778889999999998875 2221 22222 36777777 8888
Q ss_pred C-EEEEEeC-CCeEEEEEcCC-CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEEcCCCeeEEEecCC
Q 001157 421 L-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 421 ~-~la~~~~-dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~l~~h 496 (1135)
. .++..+. |+.+.+|+... ..... .+..|...|.+++|+|++. .+++++. |+.+++|++..+..+..+.+|
T Consensus 123 ~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 123 NSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 8 5555444 99999999987 43333 6778999999999999998 7888885 999999999998999999999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
...|.+++|+|.+. ..+++++.|+.|++||...+.... .+..+.... ...|++++.++++++ .++.+++|+..
T Consensus 198 ~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~d~~~~~~~~~ 271 (466)
T COG2319 198 TDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS----SDGTIRLWDLR 271 (466)
T ss_pred CCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec----CCCcEEEeeec
Confidence 99999999996542 255666999999999888666665 566676664 338999998888665 47889999998
Q ss_pred CCce-eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE-eCC
Q 001157 576 EGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSD 653 (1135)
Q Consensus 576 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d 653 (1135)
.... ...+..|.. .+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+ ..|
T Consensus 272 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 272 SSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred CCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC
Confidence 6664 444445544 8999999999999998888899999999888776666511222257788883332455555 567
Q ss_pred CcEEEEECCCc
Q 001157 654 NGIKILANSDG 664 (1135)
Q Consensus 654 g~v~iw~~~~~ 664 (1135)
+.+.+|+....
T Consensus 351 ~~~~~~~~~~~ 361 (466)
T COG2319 351 GTIRLWDLRTG 361 (466)
T ss_pred CcEEeeecCCC
Confidence 77877876544
No 163
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=3.3e-19 Score=174.59 Aligned_cols=407 Identities=12% Similarity=0.116 Sum_probs=257.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
-+.|||+|+++|+++.- .+.|-|.++-+..... .--..|..+.|..|... .|.....|+.|.+|++...+-..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 6778887775443211 11346888999998875 566678899999999999998889
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
+....+++.+++|+|++. ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++. +|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 988999999999999764 677888889999999998765543 3334445688999999999988763 1111123233
Q ss_pred eCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE
Q 001157 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1135)
.-....+++.+..... ..+.+.|+|||+.++.-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2333445556665554 567799999999887643 23333333221 146789999999999999
Q ss_pred eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCC
Q 001157 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.|+.+|+.+--+- +.+..+- |...+.
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~--------------------------------------------------- 255 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYH--------------------------------------------------- 255 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhcc---------------------------------------------------
Confidence 99999999875433 1111110 100000
Q ss_pred cccccCcccccccccc-ccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 731 SRLVDVKPRVAEDVDK-IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
|.+ ..++.-.. .. -.-...++.|.|..--.-..-... .+|......
T Consensus 256 -------------dp~~~~~~ke~~-------~~-------~ql~~~cLsf~p~~~~a~~~~~se--~~YE~~~~p---- 302 (447)
T KOG4497|consen 256 -------------DPTLHLLEKETF-------SI-------VQLLHHCLSFTPTDLEAHIWEESE--TIYEQQMTP---- 302 (447)
T ss_pred -------------Cchhhhhhhhhc-------ch-------hhhcccccccCCCccccCccccch--hhhhhhhcc----
Confidence 000 00000000 00 000112333433221000000000 000000000
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeC---CeEEEEeCCCceEEEEeeCCCCCeeE
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATF 886 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sd---g~i~iwd~~~~~~~~~~~~~~~~v~~ 886 (1135)
+. ...-++. .+.+. . .-.+.-++||+|..++|+-.| +.+.+||++..++-..+. ...+|.+
T Consensus 303 --------v~---~~~lkp~-tD~pn--P-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pira 366 (447)
T KOG4497|consen 303 --------VK---VHKLKPP-TDFPN--P-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRA 366 (447)
T ss_pred --------ee---eecccCC-CCCCC--c-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeE
Confidence 00 0000000 00111 2 455778999999999999975 569999998766544443 5678999
Q ss_pred EEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 887 l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
..|+| +...|+.+.....+++|.......+.. .+..-.|..+.|.-+|..++-++.|..
T Consensus 367 f~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 367 FEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 99999 777787777777899998776444443 333467999999999999999999874
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=9.8e-19 Score=176.87 Aligned_cols=300 Identities=18% Similarity=0.226 Sum_probs=217.6
Q ss_pred CCceEEEEEeCCcc-eeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 772 ASKVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 772 ~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..++..+.|.++.. .+++++.|..|++|.+...+....+.. ......+.. | ...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls~--H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLSR--H-TRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeecccC--C-cceeEEEEEcC
Confidence 35788899998877 899999999999998876443111100 011112333 7 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEeCC--------C--------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 851 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
+|..||+|+ +|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++++-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6889999765 2 344566778999999999999 999999999999999999999
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccccee---eecCCCCC------------CCCCCce
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQ------------SPLVGET 978 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~ 978 (1135)
|+.+..+..|...+..++|.|-++++++-+.|...+..++.........- .....++. .......
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777776543222111 00000000 0012345
Q ss_pred eEEECCCCcEEEE-E----ECCcE-----EEEec-c-CCcccccCCCCCCCCCeEEEEEcc------------------C
Q 001157 979 KVQFHNDQTHLLV-V----HESQI-----SVYDS-K-LECSRSWSPKDALPAPISSAIYSC------------------D 1028 (1135)
Q Consensus 979 ~~~fspdg~~l~~-~----~d~~i-----~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~------------------d 1028 (1135)
.++|+|||.+|++ + ..+.+ ++|+- . .+....+.. -..+...+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~---~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS---PKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC---CCcceEEEEeeeeEEEecccccccccccccc
Confidence 7899999999998 2 13333 44444 1 111122211 145666666665 1
Q ss_pred CCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1029 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+-.+|.++ ...|+|||.++..+++... .-|=..++.++|++ ||..|+..+.||...+-.+..+|
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~----------nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVD----------NIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEe----------eeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 22345555 5689999999998888764 24457889999999 88999999999999888877666
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.7e-19 Score=182.65 Aligned_cols=279 Identities=12% Similarity=0.160 Sum_probs=208.7
Q ss_pred CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCc-eee
Q 001157 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGE-LRQ 445 (1135)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~-~~~ 445 (1135)
...++|||+..-+.... + . -......+.++.|+.... .+|+.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~--~-----------~----~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE--Y-----------V----HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccc--c-----------c----cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 44899999876543321 0 0 011122389999988765 233345688899997554311 111
Q ss_pred eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEE
Q 001157 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~ 525 (1135)
.....+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|...|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 334444433344 89999999999999999888888999999999999997655 89999999999999
Q ss_pred EeCCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC-CEE
Q 001157 526 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 603 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 603 (1135)
..+.++.....+... +..|.-+.|+|..+.+++... .+|.|.+||.....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988877777766 446779999999888775543 388999999998888877765555588899999976 466
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcc
Q 001157 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
++.|.|..|++||....+....+... .+...++|+++|.+|+.|...|.|..||+...+..+..+..|.
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 77899999999999988777777543 3678999999999999999999999999987766665555443
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=4e-19 Score=177.57 Aligned_cols=268 Identities=13% Similarity=0.200 Sum_probs=192.4
Q ss_pred ceeEEEEecCCCCeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccc-cccccceeecccccccccccccccccCCCeeE
Q 001157 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 336 ~~~~~~~l~h~~~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
+........|.+.|+-+.-++-|+ .++|+-+..|.|.||++...-. +....+.+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 333455556888888888888753 4667778899999999864211 1110000000 111223346789999999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---ee
Q 001157 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1135)
Q Consensus 414 v~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~ 489 (1135)
++|||- .-.|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|++||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 235788888888999999987654444467789999999999998777 8999999999999999988 44
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC---CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. +.+..+..|..+|+++.|+|.....+.++. .|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 444 7899999999997665 59999999999999999864 456789999999999999997665554432 48
Q ss_pred ceEEEEeCCCCc----------------eeEEeecc-cCCceeEEEEeCCC-CEEEEEecCCeEEEE
Q 001157 567 SHLVEWNESEGA----------------IKRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 567 ~~i~~wd~~~~~----------------~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 615 (1135)
.+|.+||+..-. +.+-+-.| .+..+..+.|++.- .++++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 889999985211 01111222 12246667888765 4677777777 3444
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=8.6e-19 Score=179.78 Aligned_cols=209 Identities=15% Similarity=0.212 Sum_probs=167.0
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC----CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeE
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i 523 (1135)
...-+.++|++++|+|....-++++|+.-|.|-+||+.+ ...+..+..|.++|.+|.|+|.+. ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 444688899999999987644899999999999999953 234567788999999999999866 789999999999
Q ss_pred EEEeCCCCCceEEec--CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce-eEEeecccCCceeEEEEeCCC
Q 001157 524 KAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
++-|++.......+. .....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+.-|.. .|..++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 999998765444333 35567888999988888887753 55799999997654 556666666 89999999977
Q ss_pred C-EEEEEecCCeEEEEECCCCeeeE--EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 601 N-RFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 601 ~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
. +++++|.|++.+|||++...... .+....|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4 57789999999999998644333 24444455689999999988789999999999999963
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.5e-18 Score=174.32 Aligned_cols=248 Identities=15% Similarity=0.181 Sum_probs=187.0
Q ss_pred CCCEEEEE---eCCCeEEEEEc-CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-------
Q 001157 419 DGLMLGVA---FSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------- 487 (1135)
Q Consensus 419 dg~~la~~---~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~------- 487 (1135)
+.++||.. +..|...+.-+ ++|+.-.....+.||+++|..++|+|-+.+ .|||||+|.+|.||.+..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45566553 22223333322 334433444456799999999999998776 8999999999999998754
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.+..|.||...|..++|+|... +.|++++.|.+|.+||+.+++....+. |..-|.++.|+.||.++++.+. |.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34667889999999999999866 799999999999999999999999988 9999999999999999999874 77
Q ss_pred eEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
.|++||.++++.+..-.+|.+..-..+.|-.+|..+-+|- .+.++-+||..+.+.-..+..-...+.|.---|.+|.
T Consensus 196 kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence 7999999999999988888765556677888888444432 6788999998765432222211122234445567888
Q ss_pred CEEEEEe-CCCcEEEEECCCcchheeeccC
Q 001157 645 SLLAVTT-SDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 645 ~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.++..++ .|+.||-|.+.+....+..+..
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNT 305 (472)
T ss_pred CEEEEEecCCcceEEEEecCCCceeEEecc
Confidence 8776555 5999999999887544444443
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=173.76 Aligned_cols=248 Identities=17% Similarity=0.261 Sum_probs=192.8
Q ss_pred ccccCCCeeEEEEcCCCC--EEEEEeCCCeEEEEEcCCC-------------CceeeeeEeecCCCCeeEEEEecCCCce
Q 001157 404 LNDAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~--~la~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1135)
..+|.+.++.+.-++-|+ +.|+=+..|.|.||++... ...+.++++.+|...=+.++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 456888888888887554 5555678899999997531 223456688899999999999994332
Q ss_pred EEEEEcCCCcEEEEEcCCCeeE---EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce--EEecCCCCe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~---~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~ 543 (1135)
.|+||.--+.|++|...+|.-. ..|.+|...|..++|+|..+ ..|++||.||+|+|||++.+... .....|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889988899999999987654 35778999999999999987 69999999999999999987332 244778899
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC---CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCC
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+.+.|+.+-.+|++|+. +|++.|||++. ++++..|+.|.. +|+++.|+|.. ..|+++|.|.+|.+||+..
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999888888763 88999999985 678889999888 99999999976 4566788999999999853
Q ss_pred Cee----------------eEEEeCCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEE
Q 001157 620 MNM----------------LTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKIL 659 (1135)
Q Consensus 620 ~~~----------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw 659 (1135)
..- .+.+-.|.+...+..+.|+++- .++++.+.|| +.||
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 211 1122334455678889999853 4666666675 3444
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=178.70 Aligned_cols=293 Identities=11% Similarity=0.100 Sum_probs=201.8
Q ss_pred ecCCCCCCceeecCCcceeE--EEEecCCCCeeEEEeecC-------CCeEEEEEeCCCcEEEEEcCCccccccccceee
Q 001157 320 FAGVAHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVW 390 (1135)
Q Consensus 320 ~~~~~~~~~~~~~d~~~~~~--~~~l~h~~~V~~~~fspd-------g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~ 390 (1135)
.-.+-.++.+|.++...... .+-+--.....|++|..- |+ ++|.|+.|..|.|||+.-...+.- .+.+-
T Consensus 145 ~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LG 222 (463)
T KOG0270|consen 145 NEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLG 222 (463)
T ss_pred ccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeec
Confidence 33445556666666543221 111111334466666432 44 899999999999999863222110 00000
Q ss_pred ccc---ccccccccccccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCC
Q 001157 391 DIS---AASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 391 ~~~---~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~ 466 (1135)
... ..........-.+|+..|..++|+.+ ...||+|+.|.+|++||+.++++.. .+..|.+.|.+++|+|...
T Consensus 223 s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 223 SKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEP 299 (463)
T ss_pred hhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCc
Confidence 000 00000011124579999999999986 4589999999999999999998766 6778999999999999877
Q ss_pred ceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEEecCCCCeEE
Q 001157 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCT 545 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~ 545 (1135)
. +|++|+.|++|.+.|.+........-...+.|-.++|.|... ..++++..||+++-+|++.. +++..+..|...|.
T Consensus 300 ~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 300 S-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred e-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 6 899999999999999985333222223567899999998765 67888899999999999987 67789999999999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCE-EEEEecCCeEEEEECCCCee
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++++++.-..+++.+ ..++.+.+|++..... +..-.-.- +...|.++.|+-.+ ++.||..+.+++||+.+...
T Consensus 378 gl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred eEEecCCCCcceeec---cccceEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999877655443 2488999999864333 21111111 13567777787655 55577888899999987654
Q ss_pred e
Q 001157 623 L 623 (1135)
Q Consensus 623 ~ 623 (1135)
+
T Consensus 454 V 454 (463)
T KOG0270|consen 454 V 454 (463)
T ss_pred H
Confidence 4
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=7.4e-17 Score=168.19 Aligned_cols=493 Identities=11% Similarity=0.106 Sum_probs=294.7
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEE-e-----cCCCceEEEEEcCCCcE
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-A-----HPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s-----~d~~~~~l~s~~~d~~i 479 (1135)
.|...|.|+.|+.+...+.+++++..+.-||+.+... ... .+ ....|....+ - ..++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3666788999998888887776666555566554322 111 11 1111111111 0 01111167888899999
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.|.+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.- ++-...++......|+|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888999999999999998876 67999999999999973 333344455566799999999999988877
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
. .+.+.+=.+.....+..++.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|.+ +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhcc--ceeeee
Confidence 4 45688888877777788888877 899999999999999999999999999864 44444444444 899999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|.|+ ..++.++.. ++|+=.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~----------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSS----------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeeecC-----------------------------------------------------------
Confidence 9999 666666543 433100
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 799 (1135)
...+.|..+++|+||.+++.+++.|.+.+=
T Consensus 254 --------------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 254 --------------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred --------------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 023567889999999999999999887653
Q ss_pred eecccC-CCCCCc--ccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE
Q 001157 800 KWQRTE-RNPSGK--ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1135)
Q Consensus 800 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~ 876 (1135)
..-... ...+++ ......+.+-|+.++..-...+ ..++...++ .-.+|+++....|++|.-........
T Consensus 284 ~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~------p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpii 355 (737)
T KOG1524|consen 284 YAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEF------PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPII 355 (737)
T ss_pred eeehhhhhhccceeEeeccceEEeehhhhhHHHHhhC------ccceeeeee--ceeEEEEEeccEEEEEecCCccCcEE
Confidence 322211 111111 1122234555666655432222 444544443 44677777778888888765544444
Q ss_pred eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-eecCccCce---EEEEEcCCCCeEEEE--cCCCcEEE
Q 001157 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI---TGLAFSPTLNALVSS--GADAQLCM 950 (1135)
Q Consensus 877 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i---~~l~~s~d~~~l~s~--~~D~~i~i 950 (1135)
+.+....+.-+.-+. +++. ..+..+|.+|..+....+. .+.|..-.+ ..+.... ..|+.- .....+.+
T Consensus 356 idgre~tr~lieq~e---k~fl-i~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLan--dtLaird~ad~kvlhl 429 (737)
T KOG1524|consen 356 IDGREDTRNLIEQGE---KYFL-ILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLAN--DTLAIRDNADPKVLHL 429 (737)
T ss_pred EeccccchhHhhhhh---hheE-EecCcEEEEEEecCceecCCCCCCcccccccceeeeccc--ceEEeecCCCCeeEEe
Confidence 554443333333222 2222 2233456666654322111 112211110 1233322 234432 23345788
Q ss_pred EeC-CCcccccceeeecCCCCCCCCCCceeEEE----CCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEE
Q 001157 951 WSI-DKWEKLKSRFIQAPAGRQSPLVGETKVQF----HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSA 1023 (1135)
Q Consensus 951 Wd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~f----spdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~ 1023 (1135)
+|. .+|+...-.-. + .|. ..+..++. .++.+.++. -.++.+.|=.+ +......+... ..-|..+
T Consensus 430 Fd~istgk~qgDgk~--L-~hk---~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtL 500 (737)
T KOG1524|consen 430 FDLISTGKRQGDGKS--L-RHK---QQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTL 500 (737)
T ss_pred ccCCCCCcccCCccc--c-chh---hhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhh
Confidence 888 55553211100 0 011 22222222 233344444 34455555444 22222222211 5567788
Q ss_pred EEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 1024 IYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1024 ~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
+|+..-. +.+|-.|+++.||-..+..
T Consensus 501 awndttN-iLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 501 AWNDTTN-ILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhccccc-eeeeeccceEEEEEcCCcc
Confidence 8865544 6678889999999987543
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.1e-19 Score=202.96 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=206.4
Q ss_pred eEEEEecCCCCeeEEEeecCCCe---EEEEEeCCCcEEEEEcCCc---cccccccceeecccccccccccccccccCCCe
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~---lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+..+......+.++|.+.|.. +||.|..||.|.+||...- .... .......|.+.|
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V 119 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPV 119 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCce
Confidence 45666667788999999998876 6999999999999998752 1111 011256799999
Q ss_pred eEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 412 NRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 412 ~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
..+.|++... +||+|+.||.|.|||++..+...... -....+.|.+++|+..-++ .|++++.+|.+.|||++..+.+
T Consensus 120 ~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 120 LGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcc
Confidence 9999999655 99999999999999998755432111 1124567999999988776 7999999999999999998888
Q ss_pred EEecCCCC--CeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCC-CEEEEEeeCC
Q 001157 491 YTFEGHEA--PVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSK 563 (1135)
Q Consensus 491 ~~l~~h~~--~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~ 563 (1135)
-.+..|.+ .+..++|+|+.. ..+++++.|. .|.+||++.... ...+..|...|.++.|++.+ .++++++
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--- 273 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--- 273 (1049)
T ss_pred cccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---
Confidence 77766554 477899999876 4555555543 499999987654 45678999999999999987 6677776
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCCe
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.|+.|.+|+.++++.+..+....+ .+..+.|+|... .+++++.||.|.|+.+.+..
T Consensus 274 -kD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 274 -KDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -CCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 488899999999999999998555 889999999886 67778899999999987654
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=163.80 Aligned_cols=284 Identities=15% Similarity=0.179 Sum_probs=197.2
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee-
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS- 849 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s- 849 (1135)
.........+||||..|++.+.|..+.+|+++......+..... ............ ...|..-+|-
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~---------~~~~~~~~r~~e----g~tvydy~wYs 114 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPL---------NFSKHLSYRYQE----GETVYDYCWYS 114 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcc---------ccccceeEEecc----CCEEEEEEeee
Confidence 34456778899999999999999999999997643322210000 000011111111 4456665553
Q ss_pred ------cCCCEEEEEe-CCeEEEEeCCCceEEEEeeC--CCC---CeeEEEEeCCCCcEEEEEeCCccEEEEEc-ccceE
Q 001157 850 ------KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS--PPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNV-RVDEV 916 (1135)
Q Consensus 850 ------~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~--~~~---~v~~l~~sp~~~~~lasg~~dg~v~iwd~-~~~~~ 916 (1135)
|+-.++|+.+ +.-|++||.-+|++...+.+ |.. ...+++|+| ||..|.+| ....|+++|+ ..|..
T Consensus 115 ~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 115 RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeec-ccceEEEeeccCCCCC
Confidence 5667888888 78899999999999888765 333 356899999 88888755 6779999999 44431
Q ss_pred ---eEee----cCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcE
Q 001157 917 ---KTKL----KGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1135)
Q Consensus 917 ---~~~l----~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1135)
..++ .+..+-|.+++|+|-.. .++.++-...+-|+.-..+. .+..+-+|. ..|+.++|.+||..
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-----pl~llggh~---gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-----PLQLLGGHG---GGVTHLQWCEDGNK 264 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-----ceeeecccC---CCeeeEEeccCcCe
Confidence 1122 23467789999999764 89999988888888877755 455566777 79999999999999
Q ss_pred EEEE--ECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC-CceeeccCCCcccCc
Q 001157 989 LLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPT 1063 (1135)
Q Consensus 989 l~~~--~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~-~~~~~~~~~~~~~~~ 1063 (1135)
|+++ .+..|..||+ ....+-.+..+.+....-.-....|+|++|++|+.||.|++||+++ |+....+
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-------- 336 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-------- 336 (406)
T ss_pred ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc--------
Confidence 9995 4788999999 3344444433322122222345569999999999999999999998 5533332
Q ss_pred cccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1064 YAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1064 ~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
..++..+-.+++.| --.+++++
T Consensus 337 ---~~~sd~vNgvslnP-~mpilats 358 (406)
T KOG2919|consen 337 ---GNYSDTVNGVSLNP-IMPILATS 358 (406)
T ss_pred ---ccccccccceecCc-ccceeeec
Confidence 35667788888888 33455544
No 174
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1e-16 Score=174.29 Aligned_cols=542 Identities=12% Similarity=0.119 Sum_probs=310.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-----
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----- 419 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----- 419 (1135)
+...-.++.|+|.| ++|.|+. ..|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 34457889999999 6788874 5788889888777654 5669999999999883
Q ss_pred -C------CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC---CCceEEEEEcCCCcEEEEEcCCCee
Q 001157 420 -G------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 420 -g------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
+ -+||++...|.|.+||...+..+. .+..|..+|..++|-+. .+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 267888889999999999876554 67788999999998753 333 566666788999999999999
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCC-----ceEEec-CCCC--------------------
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLG-----SRVDYD-APGN-------------------- 542 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~-----~~~~~~-~~~~-------------------- 542 (1135)
............++.+.|-...++.+.+ ..|.+.+-+.- ..+ ....+. .|..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 8887766667777888877554444444 44555544331 111 111111 1100
Q ss_pred -----eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC--CEEEEEecCCeEEEE
Q 001157 543 -----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 543 -----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw 615 (1135)
....++|+|.-+.++.... ...+.++|++-..++....-... .+.-+.+-|++ ..|++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 1123567886665554443 45599999988777777665544 55667777776 568888899999999
Q ss_pred ECCCCe----------------eeEEEeCCCCCCCcCeEEEecC-CCEEEEEeCCCcEEEEECCCcchheeeccCccccc
Q 001157 616 DMDNMN----------------MLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 616 d~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 678 (1135)
-.+... ....+..-... .+...+..|. ...++.--.+|.+.+|.+.+|........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 766522 11111111111 1222233343 44455555678888998887621110000000000
Q ss_pred CCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCC
Q 001157 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1135)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~ 758 (1135)
. -|.+.+..- .+.
T Consensus 381 ~------------pf~f~~~~~-----------------------------------------------~v~-------- 393 (1062)
T KOG1912|consen 381 L------------PFDFNLSTK-----------------------------------------------LVG-------- 393 (1062)
T ss_pred c------------cccccCcee-----------------------------------------------ehh--------
Confidence 0 000000000 000
Q ss_pred CceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCC
Q 001157 759 SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 838 (1135)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 838 (1135)
+-.-+..|.||. -..|.+.+ .. ++..........++
T Consensus 394 ---------------k~~l~~LS~dg~-----h~sGs~~~----------------~~-----~p~p~~t~~~~~p~--- 429 (1062)
T KOG1912|consen 394 ---------------KTSLISLSDDGS-----HSSGSTCV----------------RM-----RPMPELTKVENDPG--- 429 (1062)
T ss_pred ---------------hccccchhhcCC-----CCCCceee----------------ec-----ccCcccceeecCCC---
Confidence 000011112220 00011000 00 00000000000000
Q ss_pred CCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEE---------eCCccEEE
Q 001157 839 TEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG---------MEDSSVQI 908 (1135)
Q Consensus 839 ~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg---------~~dg~v~i 908 (1135)
+....+. -.++|.|. .|+|.++|+.++..-+.+..|...|.++.|.. ...++-.+ +.-+.+.+
T Consensus 430 --~n~~~~~----~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~v 502 (1062)
T KOG1912|consen 430 --GNTPAGT----VPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVV 502 (1062)
T ss_pred --CCcccee----eeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEE
Confidence 0000111 13677887 79999999999999999999999999999985 44443222 22245778
Q ss_pred EEcccceE--eEee-cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEEC-C
Q 001157 909 YNVRVDEV--KTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH-N 984 (1135)
Q Consensus 909 wd~~~~~~--~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs-p 984 (1135)
-|+.+|-- .+.+ +....+|+.+..|..|+||+....|.-+.+||+++.......-... --++.+.|+ |
T Consensus 503 tdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~--------P~it~leWsl~ 574 (1062)
T KOG1912|consen 503 TDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL--------PLITVLEWSLP 574 (1062)
T ss_pred EEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC--------CcEEEEeeccc
Confidence 88888853 2222 2345689999999999999999999999999998755332211111 125677776 3
Q ss_pred CCcEE---------------EEEECCcEEEEec--cCCcccccCCC----CCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001157 985 DQTHL---------------LVVHESQISVYDS--KLECSRSWSPK----DALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 985 dg~~l---------------~~~~d~~i~vwd~--~~~~~~~~~~~----~~h~~~i~~~~~s~dg~~l~s~~~dg~V~v 1043 (1135)
.-..+ ++......+++.+ ........... ......+..|+| .+..|+.|..+|.+.+
T Consensus 575 ~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~ 652 (1062)
T KOG1912|consen 575 KHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVV 652 (1062)
T ss_pred CCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeE
Confidence 21111 1111122333333 11111100000 000112233444 4668999999999999
Q ss_pred EecC
Q 001157 1044 FDAE 1047 (1135)
Q Consensus 1044 wd~~ 1047 (1135)
||+.
T Consensus 653 WDlg 656 (1062)
T KOG1912|consen 653 WDLG 656 (1062)
T ss_pred Eecc
Confidence 9975
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=7.1e-18 Score=169.61 Aligned_cols=235 Identities=15% Similarity=0.243 Sum_probs=185.7
Q ss_pred cccccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce----eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001157 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 477 (1135)
.+.||.++|..++|+| +...||+|+.|.+|.||++..+... .....|.+|...|..++|+|.... .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4679999999999999 6778999999999999999765432 334578899999999999998876 789999999
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC-eEEEEEEcCCCCEE
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1135)
+|.+||+.+|+.+-++. |...|.++.|+.+ |.++++.+.|+.||+||.++++.+..-..|.+ .-..+.|-.+|+ +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 9999999999765 49999999999999999999988887766654 556667888898 6
Q ss_pred EEEeeCCCCCceEEEEeCCCCc---eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCee-eEEEeCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1135)
++.+.++-.+.++-+||...-+ ....+.. ...|.--.+.+|.+.++.+| .|+.||-|.+....+ +..+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 6666677778999999976543 2233333 33566677889988887766 899999999987653 233322222
Q ss_pred CCCcCeEEEecCC
Q 001157 632 LPASPRLRFNKEG 644 (1135)
Q Consensus 632 ~~~v~~~~~s~~~ 644 (1135)
..+-..+.|.|..
T Consensus 309 ~epQRG~g~mPKR 321 (472)
T KOG0303|consen 309 KEPQRGMGFMPKR 321 (472)
T ss_pred CCccccccccccc
Confidence 2344566676643
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=2.9e-17 Score=161.09 Aligned_cols=379 Identities=13% Similarity=0.152 Sum_probs=245.7
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-ecCCeEEEEECCCCeeeE
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 624 (1135)
-.+|||+|++++++. +..+.+-|..+-+..+.|..-. .|..+.|..|.-+++++ ..++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999986 4478899988877776666543 56778899999887775 588899999999888777
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEE-EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccc
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1135)
.+... ...+.++.|||||+.+. +...+-.|.+|.+.+..-..-.
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--------------------------------- 130 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--------------------------------- 130 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec---------------------------------
Confidence 77643 44789999999996555 5556889999998776211100
Q ss_pred cccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC
Q 001157 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 783 (1135)
. ....+..++|.||
T Consensus 131 --------------------------------------------------------------~----pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 131 --------------------------------------------------------------H----PKTNVKGYAFHPD 144 (447)
T ss_pred --------------------------------------------------------------c----cccCceeEEECCC
Confidence 0 1123477899999
Q ss_pred cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe---C
Q 001157 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 860 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s---d 860 (1135)
|++.+..+.-.....+++. ..+-|.. +. .+.- . .-..+.+.|+|||..||+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~l-----l~-~f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWIL-----LK-EFKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHHH-----HH-hcCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9977665543111000000 0011111 11 1111 1 44567799999999998765 3
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc--------------
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 926 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------- 926 (1135)
-.|..|.- .-.+..++|+| .+++|++|+.|+.+||.+--+.+....+- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 44444432 23577899999 89999999999999998877776655442 2111
Q ss_pred ------eEEEEEcCCCCeEEEEcCCCcEEEEeCCCc--cc----ccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC
Q 001157 927 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKW--EK----LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1135)
Q Consensus 927 ------i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1135)
..++.|.|.. -...+|....- +. .....++.+.....+.-++..++|++|..++++-+|
T Consensus 268 ~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 2244454432 11223332210 00 000111111222223357889999999999999655
Q ss_pred ---CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCC
Q 001157 995 ---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTA 1071 (1135)
Q Consensus 995 ---~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
+.+.+||+....+...... ..+|.+..|.|....|+.+.....+++|.......++. . ..+-
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P-----------~~GF 403 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-P-----------KKGF 403 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-C-----------CCCc
Confidence 5699999944444333332 57899999999998888888888899998876443332 1 2225
Q ss_pred CcEEEeeCCCCCCEEEEEecCCc
Q 001157 1072 HPLVIAPHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1072 ~~~~~~~sp~~~~~l~s~~~Dg~ 1094 (1135)
.+..++|.- +|..++-.+.|.-
T Consensus 404 ~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecC-CCcEEEEEcCCce
Confidence 677899998 6777887887764
No 177
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.6e-16 Score=167.30 Aligned_cols=561 Identities=15% Similarity=0.157 Sum_probs=325.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCC----------CceEEEEEcCCCc
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDKM 478 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~----------~~~~l~s~~~d~~ 478 (1135)
..-.++.|+|.| ++|.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. .+++|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 336788999877 5566644 458888888766555 677899999999998642 3468899999999
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCc--cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC-CCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 555 (1135)
|.+||...+..+..+..|..++..++|.+..+. .+|+.-....++.+|+.++++.............|+.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876543 47777788899999999999999988887778888888884 333
Q ss_pred EEEEeeCCCCCceEEEEeCC-C------CceeEEeecccC-----------C-----c--------eeEEEEeCCCCEEE
Q 001157 556 LFSCGTSKEGESHLVEWNES-E------GAIKRTYSGFRK-----------R-----S--------LGVVQFDTTRNRFL 604 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~-~------~~~~~~~~~~~~-----------~-----~--------v~~~~~s~~~~~l~ 604 (1135)
+..-+. .|.+.+-+.- . |+..+.-..|.+ . + ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 333321 3444444321 1 222221111111 0 0 01256788777677
Q ss_pred EEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC--CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCC
Q 001157 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
.......+.++|++-..++..+....+ .+.-+.+-|++ ..|+++-.||.+.+|--......+..-..+-
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l------- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL------- 317 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh-------
Confidence 777788999999999999998887755 34556666654 5799999999999997543211111100000
Q ss_pred CCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCcee
Q 001157 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1135)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1135)
+ +|+ ..++.
T Consensus 318 --------------------------~----------------------------------------~dl-----~~Q~~ 326 (1062)
T KOG1912|consen 318 --------------------------S----------------------------------------MDL-----GEQVH 326 (1062)
T ss_pred --------------------------c----------------------------------------ccc-----ccceE
Confidence 0 000 00000
Q ss_pred EEEcCCCCCCCceEEEEEeCC-cceeeeecccceeEEEeecccCCCCCCcccccc--cceeccCCCCCccccCCCCCCCC
Q 001157 763 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANV--APQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
.+... .+-.+...+..|. ...++..-++|...+|.+..+....++.-.... .+.-++..+..+
T Consensus 327 ~vr~m---~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v----------- 392 (1062)
T KOG1912|consen 327 VVRPM---EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV----------- 392 (1062)
T ss_pred EEeec---hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh-----------
Confidence 00000 1112222333343 334555556677777776543332222110000 000000000000
Q ss_pred CCCeeEEEeecCCCEEEEEeCCe--EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
..-.-+.+|.||. -+.|. +++--+......... . +.-+....-| ++|.|+..|+|.++|+.++...
T Consensus 393 -~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t~~~~~--p-~~n~~~~~~p----LvAvGT~sGTV~vvdvst~~v~ 460 (1062)
T KOG1912|consen 393 -GKTSLISLSDDGS----HSSGSTCVRMRPMPELTKVEND--P-GGNTPAGTVP----LVAVGTNSGTVDVVDVSTNAVA 460 (1062)
T ss_pred -hhccccchhhcCC----CCCCceeeecccCcccceeecC--C-CCCccceeee----eEEeecCCceEEEEEecchhhh
Confidence 0000111222220 00111 011001110100000 1 1111112223 8899999999999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEE----------cCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCc
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSS----------GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~----------~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1135)
+.+..|.+.|.++.|..... |++. +.-+.+.+-|+.+|-.... +...+.. ..+|..+..|..|+
T Consensus 461 ~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~f---R~l~~~d--espI~~irvS~~~~ 534 (1062)
T KOG1912|consen 461 ASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRF---RGLQKPD--ESPIRAIRVSSSGR 534 (1062)
T ss_pred hhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccccccccc---ccCCCCC--cCcceeeeecccCc
Confidence 99999999999999975543 3332 2234577889988774432 2222222 27899999999999
Q ss_pred EEEEE-ECCcEEEEec-cCCcccccCCCCCCCCC-eEEEEEc-cCC----------------CEEEEEecCCcEEEEecC
Q 001157 988 HLLVV-HESQISVYDS-KLECSRSWSPKDALPAP-ISSAIYS-CDG----------------LLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 988 ~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~-i~~~~~s-~dg----------------~~l~s~~~dg~V~vwd~~ 1047 (1135)
||++. .+.-+.+||+ ...+++.... .-+ |+.+.|+ |.- +..++.+.|.. ++.+-
T Consensus 535 yLai~Fr~~plEiwd~kt~~~lr~mS~----a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~--~~~~~ 608 (1062)
T KOG1912|consen 535 YLAILFRREPLEIWDLKTLRMLRLMSL----ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESR--IYHIT 608 (1062)
T ss_pred eEEEEecccchHHHhhccchHHHHHhh----cCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccch--heehh
Confidence 99994 7889999999 4444444332 445 8999998 321 23333332322 22221
Q ss_pred C-CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCC
Q 001157 1048 T-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1048 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
. +........ -....+...-...+++| .+..++.|..+|.+.+||+..-
T Consensus 609 ~~a~~~sdgsq----~~~a~esfafal~~mAw---k~d~lv~GD~~GNl~~WDlg~R 658 (1062)
T KOG1912|consen 609 LSALVVSDGSQ----VNTAWESFAFALCAMAW---KDDILVVGDVEGNLVVWDLGRR 658 (1062)
T ss_pred hhhhhhccccc----hhhHHHHHHHHHHhhhc---cCCeeEeecccCceeEEecccc
Confidence 1 111111000 00001111223345778 4579999999999999998643
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=165.94 Aligned_cols=272 Identities=15% Similarity=0.210 Sum_probs=189.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|.|+.|+.+.. ++.++ .|..+.+|.-.+......... ... .++. ..|-.+- +..=-.....++
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~-----p~d--f~pt---~~h~~~r-s~~~g~~~d~~~ 79 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKL-----PDD--FVPT---DMHLGGR-SSGGGKGSDTLL 79 (737)
T ss_pred cceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhC-----Ccc--cCCc---ccccccc-ccCCCCCcceEE
Confidence 556678999999987 55544 466666665433332211000 000 0000 0110000 000001234788
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
.++.||.+.|.+-.. +..+ ...+|.+.|.+-.|+|||. -|+|+++||.|++|. ++|-...++.....+|.|++
T Consensus 80 i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 899999999987544 2222 5678999999999999999 799999999999999 77876666666788999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|.|+.+ +.+.+.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-..++||.. |..+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 999865 4555544 45555556666777888999999999999999999999985 7789999965 66666666
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.|.. +|++++|+|+ +.++.++. +++++ .. ...+.|..++||+||..+++|+..|.+.+=.
T Consensus 225 ~~ey-~ITSva~npd-~~~~v~S~-nt~R~------------~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 225 AEEY-AITSVAFNPE-KDYLLWSY-NTARF------------SS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred hhcc-ceeeeeeccc-cceeeeee-eeeee------------cC-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 6666 8999999999 55555543 34441 11 1234789999999999999999988876543
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=6e-18 Score=178.54 Aligned_cols=257 Identities=14% Similarity=0.160 Sum_probs=192.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-----CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|...|+.++|.|....|++++.||++.+|++. +...+.+..+|.+|.++|.|++..++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2345677889999999999999999999 8999999999
Q ss_pred EEEEEcCC------C----eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC--CCeEEE
Q 001157 479 IKVWDVVA------G----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTM 546 (1135)
Q Consensus 479 i~iwd~~~------~----~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~ 546 (1135)
|+.|++.. . .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99995541 1 2335678999999999999887 6799999999999998765544 333222 223334
Q ss_pred EEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc------CCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
+.+-...-.+..++. ..+.-.+.+...+..+..+.... ...+..+.++|.+...+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 444332211111111 11222233444444444333221 124667889999999999999999999999999
Q ss_pred eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
+++.....|. ..++++++.|+|.+|++++.|+.+++|.+... .+....
T Consensus 522 ~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k-~~~~es 569 (577)
T KOG0642|consen 522 KILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK-TCVLES 569 (577)
T ss_pred ccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch-heeecc
Confidence 9998888764 47999999999999999999999999998665 444433
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.6e-18 Score=173.38 Aligned_cols=298 Identities=17% Similarity=0.252 Sum_probs=234.3
Q ss_pred EEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
...|. |.+.|+.|.|...|. +|++|+.|..|.+||+..++.... ...+|...|....|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 33444 899999999999997 899999999999999998876543 1468999999999988
Q ss_pred --CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe---
Q 001157 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 419 --dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--- 493 (1135)
+.+.+++++.||.+++=.+.....+.....+..|.++|.-++.-|+... -|.+++.|+.+.-.|++.+.....+
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 4668999999999999887665555555567789999999999999877 7899999999999999877654333
Q ss_pred cCCCC---CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce------EEec------CCCCeEEEEEEcCCCCEEEE
Q 001157 494 EGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 494 ~~h~~---~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~ 558 (1135)
..+.. ...+++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 23333 567888888754 68999999999999998653322 1111 22337999999977766665
Q ss_pred EeeCCCCCceEEEEeCCC--C----------ceeE-EeecccCC-ceeEEE-EeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 559 CGTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
... +-.|+++.... | ..+. .+++|.+. .|..+- |.|..+|+++|+.-|.|.||+-.+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 543 55688885432 3 2233 38888653 355554 6788899999999999999999999999
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..+.+..+ .|+|+.-+|--.+||+.+-|..|+||...+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99988776 7999999999999999999999999987443
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=159.25 Aligned_cols=296 Identities=11% Similarity=0.124 Sum_probs=210.5
Q ss_pred ecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+.|.+.|+++.||.+++ +||+|+.|..++||++..--.... . .+++. .-..|...|.|++|....++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~--~---------KPI~~-~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT--P---------KPIGV-MEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC--C---------CCcee-ccCccccceEEEEEccCCee
Confidence 34888999999999997 899999999999999864321111 0 01110 12346689999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eE--EEecCCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEGHEAP 499 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~l~~h~~~ 499 (1135)
|.+|..+++|.+-|+++.+.+.... -....+.|+.+..+|-.. .+++.+.++.|.+||.+... .+ ..+......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred EecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 9999999999999999977664211 112234899999999977 89999999999999988644 21 222334456
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-------EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
...+.|+|... .+|++.+..+-+-+||.+...... .+......-.++.|+|+|+.+++.-. ...-.+|
T Consensus 197 F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~~ 271 (609)
T KOG4227|consen 197 FYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLYF 271 (609)
T ss_pred ceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEEe
Confidence 67888998765 688999999999999998654322 11111223357789999999987642 2224467
Q ss_pred eCCCCce-eEEeecccC-----CceeEEEEeCCCCEEEEEecCCeEEEEECCCC-----------------------eee
Q 001157 573 NESEGAI-KRTYSGFRK-----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-----------------------NML 623 (1135)
Q Consensus 573 d~~~~~~-~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~ 623 (1135)
|+.+.++ +..+..... ..+.+++|..|- .+++|+.+-.|++|.+... +.+
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 7766433 333331111 135567777665 4899999999999987531 123
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
..+.+|. ..++.+.|+|...+|++.+-.+.+++|...
T Consensus 351 ~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 351 TVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 4455554 468999999999999999999999999753
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.8e-16 Score=144.52 Aligned_cols=288 Identities=13% Similarity=0.143 Sum_probs=192.5
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
.|.+-+++|.+++++++..+|.|.+..+....... . ...|+......+. | +++++.++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk~~iv~eqa--h-dgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGKLKIVPEQA--H-DGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCCcceeeccc--c-CCCeeeeeee--hh
Confidence 34556789999999999999999999886421100 0 0112222222233 8 9999999998 56
Q ss_pred EEEEEeCCeEEEEeCCCceE------EEEee-------CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 854 YVMSASGGKVSLFNMMTFKV------MTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 854 ~la~~sdg~i~iwd~~~~~~------~~~~~-------~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
+|++|+||.|+=|....... +.... ..-..|+++-..|..+.+| +++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEE
Confidence 88899999999887653211 11111 1235689999999445444 5558999999999999999999
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
+||++.|.+++--.....+.||++||++|+||.++++.....-.........+.-.-.-.+..-+..+++.+....+.+|
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEE
Confidence 99999999999855556789999999999999999885442221111111111112223555667778998888999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
.+ ...+...+.. ..++.-+.|-.| .++++++.+.|.-|.+. |.....+... .| ..+...|+
T Consensus 233 hLrsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~---------s~--~c~s~s~~ 294 (325)
T KOG0649|consen 233 HLRSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE---------ST--ACYSASWQ 294 (325)
T ss_pred eccCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC---------cc--ceeeeccc
Confidence 99 5555555443 567888888554 67788888899999887 6666555421 12 22233333
Q ss_pred CCCCCEEEEEecCCcEEEE
Q 001157 1080 PSEPNQIALGMSDGAVHVV 1098 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW 1098 (1135)
-+--++|-.++..+.+.++
T Consensus 295 ~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 295 TSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CCceEEEEecccceeeeee
Confidence 2113455556666666554
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.1e-17 Score=159.52 Aligned_cols=275 Identities=12% Similarity=0.155 Sum_probs=194.9
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la~~~~dg~i~iwd~ 437 (1135)
..+|++-..|.|++||..+++.+.. ++++...++.+.|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3677888899999999999887764 678888899999987 4668999999999999999
Q ss_pred CCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEc----CCCcEEEEEcCCCee-EEEe-cCCCCCeEEEEeccCCC
Q 001157 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~l-~~h~~~v~~l~~~~~~~ 510 (1135)
+......+. ....|. .+..|++..-.+. .+++|. .|-.|.+||++..+. +..+ ..|...|++++|+|...
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987665433 344555 4566777665565 677664 466899999998766 5544 57999999999999866
Q ss_pred ccEEEEEEcCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 511 IQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
++|+|||.||-|.++|+..... +.....+...|.++.|..++ +.+.+-+. .....+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence 8999999999999999876533 22334456689999999887 34555443 667999999988765544332
Q ss_pred cCC---------ceeEEE-EeC-CCCEEEEEe-cCCeEEEEECC---CC---eeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 587 RKR---------SLGVVQ-FDT-TRNRFLAAG-DEFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 587 ~~~---------~v~~~~-~s~-~~~~l~~~~-~dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
.-. .-+-+. .+| ++..++.++ .-++..++-+. ++ +.+..+.+ ++...|.++.|...+.++.
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence 100 000111 223 334455444 35666665543 22 23333333 2344688888988999999
Q ss_pred EEeCCCcEEEEECC
Q 001157 649 VTTSDNGIKILANS 662 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~ 662 (1135)
+|+.||.+.+|...
T Consensus 333 TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVE 346 (376)
T ss_pred ccCCCceEEEEecC
Confidence 99999999999863
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=155.26 Aligned_cols=304 Identities=14% Similarity=0.171 Sum_probs=193.7
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
+...++.|.. .++++.|..++ +|++|..-|.|.+|++.+......+..++. ..|..+..-|+ ..+.+-+.|+.+.+
T Consensus 6 P~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence 3455666666 78999898876 499999999999999999988888875444 36788887786 56778889999999
Q ss_pred EECCCcchheeeccCcccc---cCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 659 LANSDGVRLLRMLEGRAMD---KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|++.-+ ... ..|+.. +..|++. ........
T Consensus 82 w~ia~s-~~i---~i~Si~~nslgFCrfS----------l~~~~k~~--------------------------------- 114 (323)
T KOG0322|consen 82 WTIAYS-AFI---SIHSIVVNSLGFCRFS----------LVKKPKNS--------------------------------- 114 (323)
T ss_pred EEccCc-ceE---EEeeeeccccccccce----------eccCCCcc---------------------------------
Confidence 998764 111 111111 1111111 00000000
Q ss_pred Ccccccccc--ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC-Ccc--eeeeecccceeEEEeecccCCCCCC
Q 001157 736 VKPRVAEDV--DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSG 810 (1135)
Q Consensus 736 ~~~~~~~~~--~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~ 810 (1135)
...+...+. ..+.+-|. ....+.....-+..+..+.+.+..... ++. .+++|..+|.+.+||+..+....
T Consensus 115 eqll~yp~rgsde~h~~D~---g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-- 189 (323)
T KOG0322|consen 115 EQLLEYPSRGSDETHKQDG---GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-- 189 (323)
T ss_pred hhheecCCcccchhhhhcc---CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee--
Confidence 000000000 00000110 011111111111123444555555322 222 46778888999999987642211
Q ss_pred cccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC--ceE--EEEeeCCCCCee
Q 001157 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAAT 885 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~--~~~--~~~~~~~~~~v~ 885 (1135)
+......+.... ..| ..+|.++.|.+.-..=++|+ +..+..|+++. +.+ .....-....|.
T Consensus 190 -----------~~~~~~kv~~~~--ash-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~ 255 (323)
T KOG0322|consen 190 -----------QLPQSSKVESPN--ASH-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVS 255 (323)
T ss_pred -----------ccccccccccch--hhc-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCcc
Confidence 111111111112 237 89999999987655556666 67788888763 322 222232345788
Q ss_pred EEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 886 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
.+.+-| |++++|++++|+.||||+..+.+.+..++-|++.|.+++|+||...+|.++.|++|.+|++
T Consensus 256 gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 256 GVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999986
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=166.45 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=165.5
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||.+.|+|++|+.||.+|++|++|-.+.|||.-..+.+..+ -.||...|.++.|-|....-.++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 47899999999999999999999999999999999876655543 2489999999999997555489999999999999
Q ss_pred EcCC----------CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEE---------ecCCCC
Q 001157 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD---------YDAPGN 542 (1135)
Q Consensus 483 d~~~----------~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~---------~~~~~~ 542 (1135)
|+.. ....+.+..|...|..++..|.+. +.+.+++.||+|+-+|++.... ... +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9984 223445667999999999877654 7899999999999999986321 111 111112
Q ss_pred eEEEEEEcCCCCE-EEEEeeCCCCCceEEEEeCCCCceeEEeecccC------CceeEEE-EeCCCCEEEEEecCCeEEE
Q 001157 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQ-FDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 543 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~-~s~~~~~l~~~~~dg~i~i 614 (1135)
...++..+|...+ |++|+ .+...++||.+... ..+..... ....|+. |+|.+- ...+|.+.
T Consensus 202 elk~ltisp~rp~~laVGg----sdpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~- 270 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGG----SDPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD- 270 (758)
T ss_pred eeeeeeecCCCCceEEecC----CCchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCcccccc-
Confidence 5678999997765 44554 37789999964211 11211100 0111111 222210 01111110
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.. ...++-++|+|+|.-|++.-....|+++|+..++.....+.+
T Consensus 271 ---------~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 271 ---------RY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred ---------cc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 00 012466889999988777777779999999888655554433
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.9e-17 Score=169.34 Aligned_cols=200 Identities=22% Similarity=0.241 Sum_probs=158.8
Q ss_pred eEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceee
Q 001157 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1135)
Q Consensus 885 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~ 964 (1135)
.+++|++ ++..|++|+.||++|||+..+.+.+.....|.+.|.+|.|||||++|++.+.| ..+||++.++......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999999888888888999999999999999999999999 7999999998532211
Q ss_pred ecCCCCCCCCCCceeEEECCCC---cEEEE---EECCcEEEEec---cCCcccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 965 QAPAGRQSPLVGETKVQFHNDQ---THLLV---VHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg---~~l~~---~~d~~i~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.+.+. ......+.|+.|+ .+.+. ...+.|+.||+ .......+.....-...|++++.|+||+++|.|
T Consensus 224 -t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 1456788898887 33333 23567888887 221111221112225689999999999999999
Q ss_pred ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCC
Q 001157 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1036 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
+.||.|.|+++.+.+.+.-.. +.|...|+.+.|+| |.+++++.+.|.++.|-.+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999999988775543 47889999999999 8899999999999999998753
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3e-17 Score=162.57 Aligned_cols=292 Identities=13% Similarity=0.146 Sum_probs=201.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCC-CeEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APG-NWCT 545 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~-~~v~ 545 (1135)
.++++-..|.|++||..+++.+..|+++...++.+.|......+.+.+|+.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 6788888999999999999999999999999999999875455889999999999999999877655443 333 3566
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce-eEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCe--
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-- 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1135)
+++..-.++.++++..-...+..+.+||.+..+. ++.+...+...|+++.|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667788888775445577899999998776 666655444499999999966 788999999999999997642
Q ss_pred --eeEEEeCCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCC
Q 001157 622 --MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 622 --~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1135)
++.++.. ...|.++.|..++ +.|.+-+..++..+|+++.+.. ...+.......
T Consensus 202 DaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~-------------------- 257 (376)
T KOG1188|consen 202 DALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSA-------------------- 257 (376)
T ss_pred hhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchh--------------------
Confidence 2233322 2358899999877 4578888999999999998842 22222111000
Q ss_pred CCccccccCCCCCCCCCCCCCcccCccccCCCccccc-Cccccccc-cccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD-VKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
...+..+.+.+ -.+...-.+ +...+.+. .++..++-+.................+|..-|+
T Consensus 258 ------~d~r~~~~~dY-----------~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 258 ------DDLRKEDNCDY-----------VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR 320 (376)
T ss_pred ------hhHHhhhhhhh-----------eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence 00000000000 000000111 12233333 255666655543333333344444555778889
Q ss_pred EEEEeCCcceeeeecccceeEEEee
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKW 801 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~ 801 (1135)
++.|...+..+.+|+.||.+.+|..
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 9999999999999999999999974
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.2e-16 Score=145.12 Aligned_cols=281 Identities=19% Similarity=0.256 Sum_probs=190.8
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.|.+-++||.++ +|+.|+.+|.|.+..+.+-..-.. ............+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 567778999998 788999999999998864211100 000111111246899999999997 55677764
Q ss_pred CCCeEEEEEcCCCCce---eeeeE--eecCC-----CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 428 SKHIVHLYTYNPTGEL---RQHLE--IDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~---~~~~~--~~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
||.|+-|..+....- +...+ ...|. -.|+++...|... -++.++.|+.++-||+++|+..++++||.
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 599999987654321 11001 11222 2588999998777 46666689999999999999999999999
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC----------CCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.|.++.--... ..+++|+.||++|+||.++.+.+..+... +.+|-+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999863332 57999999999999999998887755332 235656554 556888875 45
Q ss_pred eEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC-CE
Q 001157 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 646 (1135)
.+.+|.++..++...|.-.. .+..+.|.. +.+++++..+.|.-|.+. |.....++...+ ...+..++... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 69999999988888776543 466666764 568888888889999875 343333333222 23344443322 34
Q ss_pred EEEEeCCCcEEEE
Q 001157 647 LAVTTSDNGIKIL 659 (1135)
Q Consensus 647 l~~~~~dg~v~iw 659 (1135)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4445555566554
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2e-17 Score=174.68 Aligned_cols=267 Identities=12% Similarity=0.201 Sum_probs=192.7
Q ss_pred Eec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 342 ~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
++. |.+.|++++|.|-.. .|++++.||++.+|+++....-.. ....+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEecCCc
Confidence 444 889999999999997 788999999999999943211111 0112223477999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCc-------eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGE-------LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
..+.+|+.||+|+.|++..... ......+.||.+.|+.+++|+... .|++++.||++++|+...... .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999996652211 112225779999999999999888 799999999999999776655 444
Q ss_pred cCC--CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 494 EGH--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 494 ~~h--~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
... .+.-.++.+..... ...++...-+.--++++........+... ...+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 322 12223444432211 12222222222233344433333333221 235778888999988888864
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 78899999999999999999888 8999999999999999999999999999877766655544
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.1e-16 Score=154.54 Aligned_cols=215 Identities=19% Similarity=0.341 Sum_probs=163.1
Q ss_pred eeEEEEec--CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 337 KTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~l~--h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
-+++..|. +-+.|.|+.|.|++..+++. .|..|.+|++..+..+.. .+ ....-.+|....++-
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSG 176 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceeccc
Confidence 34555555 45699999999999875543 389999999998876421 11 000122366778889
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEE
Q 001157 415 VWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 491 (1135)
Q Consensus 415 ~~sp--dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 491 (1135)
+||| ||..+++. .|+++..||+++..+...+ -.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..+++
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCcccc
Confidence 9999 88888887 7889999999987655432 2478889999999999877 899999999999999985 56789
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-----------------------------CceEEecCCCC
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPGN 542 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------------------------~~~~~~~~~~~ 542 (1135)
++.+|...|+++.|+|..+ +++++++.|..|.+|....- +.+.++..|..
T Consensus 253 el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 9999999999999999877 89999999999999965321 11224566778
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.|++++||.-..++++.-. -||.+.|=.+
T Consensus 332 SVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred ceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 8999999987777664431 3666665443
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1e-14 Score=146.46 Aligned_cols=242 Identities=11% Similarity=0.110 Sum_probs=187.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
...+..+.|+.|...|..|+.|| -++|+.+.-.... ........|.-+-|+..=- .|++..+-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSLv--aiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSLV--AIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccccee--EEEecCCCceEEEEEcccC
Confidence 34577788999999999999999 6788877644321 1112233566777775421 3333433456999999999
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC---CCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---GNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..++.+. ....|.++.++. +.|+.+-.+. |.|||+++.+.+.++... ...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 9888875 567899998854 5566665544 999999998887765443 345677777777778886543 2
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe-EEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
..|.|++||..+-+.+..+..|.. .+.+++|+++|.+|+++++.|+ |||+.+.+|+.+..+.-......|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 367799999999999999999887 9999999999999999998887 69999999999999975544557899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001157 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++|++.+..++|++|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998654
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=5.1e-17 Score=154.83 Aligned_cols=288 Identities=15% Similarity=0.181 Sum_probs=199.9
Q ss_pred EEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccc-ccCCCeeEEEEc
Q 001157 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s 417 (1135)
...|. |.+.|+++.|-.+++ |.+|...|.|++|++.+...+.. +. -|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 34444 888999999999996 66899999999999998765542 22 366788888888
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC-----CCce--EEEEEcCCC-cEEEEEcCCCee
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-----NKQL--CIVTCGDDK-MIKVWDVVAGRK 489 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~~~~~ 489 (1135)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++.|.+- ++.. .++.-++.. .+++-|..+...
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 88 567788899999999998765432 24455666666542 1110 111111110 122223222222
Q ss_pred EEEe----cCCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCCCCCceE----------EecCCCCeEEEEEEcCCCC
Q 001157 490 QYTF----EGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 490 ~~~l----~~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~~~ 554 (1135)
++.. .+..+.+.+..+.... ..-+++.|..+|.+.+||+.++.... ....|..+|.++.|.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 2211 1344566666643322 22356778889999999999874433 3344677899999987655
Q ss_pred EEEEEeeCCCCCceEEEEeCCCC--c-eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEG--A-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.=++++. +..+..|++... . .++....-.+..+..+.+-||++.++++|.|+.||+|+.++.+++..++.|..
T Consensus 219 rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 219 RGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred CCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence 5555554 445778877632 2 22222223333688899999999999999999999999999999999998864
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.|++++|+|+..++|+++.|++|.+|++
T Consensus 295 --gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 --GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7999999999999999999999999986
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=5.3e-18 Score=185.65 Aligned_cols=247 Identities=17% Similarity=0.276 Sum_probs=194.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.|+.|...|.++++|++|..++||.++++.++. .+.||.+.|+.++.+.++. ++++++.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 66899999999999999999999999999999999987776 8889999999999998887 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE--------------e------------
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------------Y------------ 537 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------------~------------ 537 (1135)
+.++.++..+++|.+.|++++|+|.. +.+.||++++||.+-.-.... +
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99999999999999999999999864 788999999999871111000 0
Q ss_pred ----cCCCCeEEEEEEcCCCCEEEEEeeCC-------CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEE-E
Q 001157 538 ----DAPGNWCTMMAYSADGTRLFSCGTSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-A 605 (1135)
Q Consensus 538 ----~~~~~~v~~~~~s~~~~~l~~~~~~~-------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~ 605 (1135)
......+.+++|...+-.+++...+- -.+..+++|++.+|.....+.+|.+ .+..+.++|-+..++ +
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceeeeeecCCCcHhhhh
Confidence 00011222233322222222222110 1245678999999999999999888 899999999776554 5
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++.||...|||+-.|.+++..... + ..+...+||+||..++....-|.+.|.....+
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 889999999999998888776532 2 36778899999999999888899999876544
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.2e-15 Score=147.68 Aligned_cols=290 Identities=15% Similarity=0.273 Sum_probs=206.7
Q ss_pred EEEEecCCCCeeEEEee--cCCCeEEEEEeC----CCcEEEEEc--CCccccccccceeecccccccccccccccccCCC
Q 001157 339 VVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 339 ~~~~l~h~~~V~~~~fs--pdg~~lla~gs~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+.+....-.+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+...+ ..|.-+
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 34455556688999999 566667888873 345555544 3444433211 358899
Q ss_pred eeEEEEcCCCC-----EEEEEeCCCeEEEEEcCCCC-ceeeeeEe-----ecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 411 VNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLEI-----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 411 V~~v~~spdg~-----~la~~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
++.+.|.|+.+ +||++ +..+|+|.+...+ .+.....+ ..+..++++..|+.-... +|.++|-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999864 56665 3359999987422 11111111 245678999999876655 89999999999
Q ss_pred EEEEcCCCee---EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCC--CCeEEEEEEcCCC
Q 001157 480 KVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSADG 553 (1135)
Q Consensus 480 ~iwd~~~~~~---~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~~~ 553 (1135)
.|||+++|.. ...+-+|...|..++|... ..+.+++++.||.+|++|++..+--. .+... ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999998733 4567789999999999874 34799999999999999998765432 22222 4577888998854
Q ss_pred -CEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCee------eE
Q 001157 554 -TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------LT 624 (1135)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~~ 624 (1135)
+++++-.. ....|.+.|++. ..++..+++|.. .|+.++|.|.. ..++++|.|..+.+||+...-. +.
T Consensus 255 pnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 255 PNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred chHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 55665554 355699999986 567888999988 99999999976 6788899999999999976322 22
Q ss_pred EEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEE
Q 001157 625 TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 658 (1135)
... ....|+.+.|++ .+..++++.. +.+.+
T Consensus 331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 331 AYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 222 224789999997 6667777654 34444
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.7e-16 Score=154.69 Aligned_cols=309 Identities=8% Similarity=0.039 Sum_probs=219.6
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
.+|.+.|.++.||.+++.|++|+.|..+++|++...- ...+.+++ .+.++.| ...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~----------------~~k~~KPI--~~~~~~H-~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM----------------VRKTPKPI--GVMEHPH-RSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHH----------------hhcCCCCc--eeccCcc-ccceEEEEE
Confidence 3488999999999999999999999999999875311 11111222 2445557 899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC--CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-EeEe--ecC
Q 001157 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTK--LKG 922 (1135)
Q Consensus 849 s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~--l~~ 922 (1135)
...++++.+|. +++|...|+++.+.+..+.... +.|..+..+| ..+.+++.+.++.|.+||....+ .+.. +..
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999998 8999999999998888776322 4899999999 67889999999999999998655 2221 222
Q ss_pred ccCceEEEEEcCCC-CeEEEEcCCCcEEEEeCCCcccccce--eeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEE
Q 001157 923 HQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 998 (1135)
Q Consensus 923 h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~ 998 (1135)
.......+.|+|.. .+|++.+.-+-+-+||.......... ....+.... ..-..+.|+|.|..+.+- ....-.
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~---~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN---TEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccc---hhhhheeeCCCCCeehhhhccCCCE
Confidence 34457788999976 56788888888999999864421110 111111100 223678899999988884 445566
Q ss_pred EEeccCCcccccCCC-----CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC----c--------cc
Q 001157 999 VYDSKLECSRSWSPK-----DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS----A--------YI 1061 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~-----~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~----~--------~~ 1061 (1135)
+||+-.+....+... ......+.+++|..|-. +++|+.+-.|++|.+.....-..+... . ..
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 788833222222211 11245688899977655 899999999999999743322221100 0 01
Q ss_pred CccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1062 PTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
....+.||...+-.+.|+| ..++|++.+-...+++|..-.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eeEEEecccccccceeecC-CcceEeccchhhheecccccc
Confidence 1345679999999999999 668999999999999998754
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=9.7e-16 Score=147.98 Aligned_cols=256 Identities=14% Similarity=0.229 Sum_probs=185.7
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCC-------CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.|.++|+.++-+|-.+++|++...+ -.+.||.+....... ....|+ ....+-..+-+.|.|+.|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINCVEW 131 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceeeEEE
Confidence 3678999999999888899988542 246788875432211 000000 001111246678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeee---EeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.++..
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhc
Confidence 99999999875 8889999999876531111 1113566788889998 566 455554 8999999999887777
Q ss_pred Eec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEE-EEeeCCCCCce
Q 001157 492 TFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESH 568 (1135)
Q Consensus 492 ~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~ 568 (1135)
.+. +|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|..+|.++.|+|....|+ +++. |..
T Consensus 208 sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~ 282 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSA 282 (370)
T ss_pred chhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Cce
Confidence 664 6888999999999864 789999999999999998755 4668899999999999999876655 5543 666
Q ss_pred EEEEeCCC-----------------------------CceeEEeecccCCceeEEEEeCCCCEEEE-EecCCeEEEEECC
Q 001157 569 LVEWNESE-----------------------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMD 618 (1135)
Q Consensus 569 i~~wd~~~-----------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~ 618 (1135)
|.+|.... ...+.++..|.+ .|++++|+.-..++++ -+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 88875421 012345677777 8999999987777554 6899998886554
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.4e-15 Score=170.76 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=200.2
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
+.+|...+. ..+...+.....|+|+.|+|....++|.|..+|+|.+||+..+....... .......
T Consensus 224 ~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~s 289 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVS 289 (555)
T ss_pred EEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------ccccccc
Confidence 445555554 67777888889999999999988899999999999999998876531100 0112456
Q ss_pred cCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCceeeeeEee---------cCCCCeeEEEEecCCCceEEEEEcC
Q 001157 407 AAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spdg--~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~~~l~s~~~ 475 (1135)
|..+|+.+.|-.+- .-+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|++
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe 368 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTE 368 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcC
Confidence 99999999997754 459999999999999876533211000110 11236899999987766 7899999
Q ss_pred CCcEEEEEcC---CCe-----eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCCceEEecCCCCeEEE
Q 001157 476 DKMIKVWDVV---AGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 476 d~~i~iwd~~---~~~-----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~ 546 (1135)
+|.|.--+-. .+. .+..+..|.++|.++.++|-.. ..+++++ |.++++|.-. ...+...+..+...+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 9988873322 222 1235567899999999988764 4445554 9999999887 55666677777778999
Q ss_pred EEEcCCCCEEEEEeeCCCCCceEEEEeCCC--CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 547 MAYSADGTRLFSCGTSKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
++|||-...++++. +++|.|.+||+.. ..++.+.... ......+.|+++|+.+++|...|++.+|++..
T Consensus 447 vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999887776665 4689999999864 3344444444 33677788999999999999999999999864
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.5e-14 Score=160.70 Aligned_cols=273 Identities=14% Similarity=0.187 Sum_probs=179.8
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~~ 439 (1135)
+.++...++.|.+|++.+...+.. .+ .+ .+.+....++++||+++|++++ .++.|.+|+++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~--~~--------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTL--LQ--------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceee--ee--------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 455557799999999964322110 00 01 2345677899999999987764 578899999974
Q ss_pred CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCC-Ce---eEEEecCCCCCeEEEEeccCCCccEE
Q 001157 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
...+...... ...+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+. +......++++|++ +++
T Consensus 67 ~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g--~~l 140 (330)
T PRK11028 67 DGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN--RTL 140 (330)
T ss_pred CCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC--CEE
Confidence 2223222122 1334567899999999 455544 588999999964 32 233333 23346677887755 566
Q ss_pred -EEEEcCCeEEEEeCCCCCceEE-----ec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC--Cc--eeEEe
Q 001157 515 -FSTAIDGKIKAWLYDYLGSRVD-----YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GA--IKRTY 583 (1135)
Q Consensus 515 -~s~s~dg~i~~wd~~~~~~~~~-----~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~~ 583 (1135)
++...++.|.+||+++...... .. ..+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEEE
Confidence 5555679999999986432211 11 12345678999999999988763 478899999873 33 33333
Q ss_pred ecccC-----CceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCe----eeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-
Q 001157 584 SGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTS- 652 (1135)
Q Consensus 584 ~~~~~-----~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 652 (1135)
..... .....+.++|++++++++. .++.|.+|++.... .+..+... .....++++|+|++|+++..
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEcc
Confidence 32111 1123588999999999985 57899999986433 22322221 23568999999999998776
Q ss_pred CCcEEEEECC
Q 001157 653 DNGIKILANS 662 (1135)
Q Consensus 653 dg~v~iw~~~ 662 (1135)
+++|.+|+++
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999875
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2.4e-14 Score=159.15 Aligned_cols=267 Identities=14% Similarity=0.190 Sum_probs=175.2
Q ss_pred CCCCceeecCC-cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCC-ccccccccceeeccccccccccc
Q 001157 324 AHTPNVYSQDD-LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQN 401 (1135)
Q Consensus 324 ~~~~~~~~~d~-~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 401 (1135)
++.+.+|..+. ...+.+.++.+.+....++++||++.+++++..++.|.+|++.. ++......
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~--------------- 75 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE--------------- 75 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee---------------
Confidence 44555555542 22346677777778899999999996555555688999999973 32211000
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~-dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
. ...+....++|+|+|++|++++. ++.|.+|++++...+ .....+. +.....+++|+|+++. ++++...++.|
T Consensus 76 --~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v 150 (330)
T PRK11028 76 --S-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRI 150 (330)
T ss_pred --e-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEE
Confidence 0 12234678999999999888764 889999999743222 2111222 2334677899999984 34666678999
Q ss_pred EEEEcCCCeeEE-------EecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCC--Cc--eEEecC------CC
Q 001157 480 KVWDVVAGRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL--GS--RVDYDA------PG 541 (1135)
Q Consensus 480 ~iwd~~~~~~~~-------~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~--~~--~~~~~~------~~ 541 (1135)
.+||+.+...+. ... .......++|+|++ ++++++.. +++|.+|+++.. .. ...+.. ..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 999997633221 111 12345678898755 78877765 999999999742 21 222211 11
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEE
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWD 616 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd 616 (1135)
.....+.++|++++++++.. +++.|.+|++.... .+...... .....+.++|+|++|+++. .+++|.+|+
T Consensus 228 ~~~~~i~~~pdg~~lyv~~~---~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 228 RWAADIHITPDGRHLYACDR---TASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ccceeEEECCCCCEEEEecC---CCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 23346889999999998742 46789999986433 22222221 1345689999999999877 489999998
Q ss_pred CC
Q 001157 617 MD 618 (1135)
Q Consensus 617 ~~ 618 (1135)
++
T Consensus 303 ~~ 304 (330)
T PRK11028 303 ID 304 (330)
T ss_pred Ec
Confidence 75
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.1e-15 Score=168.59 Aligned_cols=303 Identities=17% Similarity=0.295 Sum_probs=209.1
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC---CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h---~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
+-..+.|+|=.. .++++...-.|+|||.+.++.+..|..+ ...|+.+.+-...|..++++|+.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888777 6888887789999999999998877654 46788999888778899999999999999953211
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe
Q 001157 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 611 (1135)
. | +...|+++. ..-++. ..+..+.. .-+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw------------~~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAW------------SSLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEee------------cccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 0 0 122344432 111111 11111111 33567777778888888899
Q ss_pred EEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
|+|||......+..+..... ..|+++.-+. .|+++++|..||.|++||.......
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999999888888775533 2455554433 5799999999999999997543110
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1135)
..+..|.-
T Consensus 1245 ------------------------------------------------------s~v~~~R~------------------ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYRE------------------ 1252 (1387)
T ss_pred ------------------------------------------------------ccceeecc------------------
Confidence 01112211
Q ss_pred CCCc--eEEEEEeCCcce-eeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC--CCCeeE
Q 001157 771 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT--EESAAC 845 (1135)
Q Consensus 771 ~~~~--i~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~~v~~ 845 (1135)
|... |..+.+.++|-. |++++.+|.|++||+..... . + . +....|. .+..++
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e----------------~--~----~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E----------------T--F----LTIVAHWEYGSALTA 1309 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c----------------c--c----ceeeeccccCcccee
Confidence 3333 788888886654 99999999999999865211 0 0 0 0000010 335899
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC-------CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 915 (1135)
+..+++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-+||+|+.|.+|.||.....+
T Consensus 1310 l~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 9999999999999999999999864 33333332 235689999999 78899999999999999876543
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=5.9e-15 Score=165.72 Aligned_cols=250 Identities=15% Similarity=0.146 Sum_probs=185.9
Q ss_pred cCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--eeeee-EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 407 h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~--~~~~~-~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
-...|.|+.|+| +..++|.|+.+|.|.+||+..+.. ..... ....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 677888889999999999998765 22111 22368899999999876542248999999999999
Q ss_pred EcCCCee------EEEec------CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEe---CCCCC-----ceEEecCCCC
Q 001157 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL---YDYLG-----SRVDYDAPGN 542 (1135)
Q Consensus 483 d~~~~~~------~~~l~------~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd---~~~~~-----~~~~~~~~~~ 542 (1135)
+++.-.. ..... .-...++++.|.+... ..++.|+.+|.|.--+ .+... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764222 11111 1235688899988765 6799999999988732 22222 1225567888
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.|+++.++|-+..++..+ +|.++++|... ...++..+..+.+ .+.+++|||... .++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999888766554 37889999987 6677777777666 699999999875 4566778999999998754
Q ss_pred e--eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 621 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. ++.+.... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 44444333 335677888889999999999999999998644
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=174.53 Aligned_cols=286 Identities=14% Similarity=0.198 Sum_probs=222.9
Q ss_pred eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEE
Q 001157 534 RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1135)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1135)
+..+.+|.+.|+|+.|...|.++++++. +..++||...++.++....||.. .|+.++.+.+..++++++.|..|+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceEE
Confidence 3456678889999999999999999974 77899999999999999999988 899999999999999999999999
Q ss_pred EEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCcc
Q 001157 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1135)
+|.+..+.++..+.+|.+ .|++++|+|-. +.+.||++++||..-. .......
T Consensus 258 vWrl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~pr-------------------- 309 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPR-------------------- 309 (1113)
T ss_pred EEecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc--ccccCCC--------------------
Confidence 999999999999988755 89999999965 6788999999997511 0000000
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCC
Q 001157 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1135)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 773 (1135)
|. . .....
T Consensus 310 ----------------p~------------~--------------------------------------------~~~~~ 317 (1113)
T KOG0644|consen 310 ----------------PL------------K--------------------------------------------FTEKD 317 (1113)
T ss_pred ----------------CC------------C--------------------------------------------ccccc
Confidence 00 0 00123
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
.+.++.|..++..+++++.++.-..|.+.... | | ...+.-+.++.|-.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~----------------~-~~~lif~t~ssd~~ 365 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W----------------R-SNLLIFVTRSSDLS 365 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh---------------h----------------h-ccceEEEecccccc
Confidence 45667788888889999999887777543111 0 1 22222233333332
Q ss_pred -EEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee-cCccCceEEE
Q 001157 854 -YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGL 930 (1135)
Q Consensus 854 -~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l 930 (1135)
+.+++- +-.+.+|++.+|.+.+.+.+|...+..+.++|.+.+...+++.||...|||+-.|..++.. .+| +.+..-
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~ 444 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDG 444 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeecc
Confidence 344443 6779999999999999999999999999999988888889999999999999998777654 555 456677
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeCCCcc
Q 001157 931 AFSPTLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
+||+||+.++....-|.++|.....++
T Consensus 445 kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 445 KFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccCCCCceEecCCCCCceEEeccCCCc
Confidence 999999999988888999998876554
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=7.5e-15 Score=142.14 Aligned_cols=262 Identities=13% Similarity=0.235 Sum_probs=185.8
Q ss_pred cCCcceeEEE--EecCCCCeeEEEeecCCC----eEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 332 QDDLTKTVVR--TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 332 ~d~~~~~~~~--~l~h~~~V~~~~fspdg~----~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.+...++.+. +++|.-+++.+.|.|+.. .+||++ +..++||.+...+.... +...+....-.
T Consensus 80 ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~----------~~~~L~~~kns 147 (364)
T KOG0290|consen 80 LDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE----------LQSVLNNNKNS 147 (364)
T ss_pred EccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee----------hhhhhccCccc
Confidence 3344444433 457999999999999873 477766 45899999874221100 00111112234
Q ss_pred ccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 406 DAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+..++++..|+. |.+++.+++-|-+..|||++++........+-+|...|..++|..++.+ ++|+.|.||.|++||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEe
Confidence 5778999999997 7889999999999999999997543334467799999999999998877 8999999999999999
Q ss_pred CCCe---eEEEecCCCCCeEEEEeccCCCccEEEEEEcC-CeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCC-EEEE
Q 001157 485 VAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RLFS 558 (1135)
Q Consensus 485 ~~~~---~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~ 558 (1135)
+..+ .+++-.....+...++|++... +++++-..| ..|.+-|++.... +..+..|...|++++|.|... .+.+
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 8644 2333223356778888876543 677777665 5688999987654 568899999999999999765 5667
Q ss_pred EeeCCCCCceEEEEeCCCCc------eeEEeecccCCceeEEEEeCC-CCEEEEEecCCeEEE
Q 001157 559 CGTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKF 614 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i 614 (1135)
+|. |.++.+||+.+.- ++-.+. ..+.|+.+.|++. +.+++.+. ++++.+
T Consensus 306 aGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 306 AGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 663 7889999997532 222333 2237899999964 46666654 334433
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.2e-14 Score=163.91 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=147.4
Q ss_pred CCEEEEEeCCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---eEeEeecCccCc-
Q 001157 852 DSYVMSASGGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNR- 926 (1135)
Q Consensus 852 g~~la~~sdg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~- 926 (1135)
|.++++|.-..|+|||.....+...+.. ....|+++.-+-..|.++|+|..||.|++||.... ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 4444444457799999998777777654 33457877766546899999999999999998743 356678889888
Q ss_pred -eEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccC
Q 001157 927 -ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004 (1135)
Q Consensus 927 -i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~ 1004 (1135)
|..+.+-+.|- .|++|+.||.|++||+....... ++.... +-...+..+++..+++...+|+|+.+.|+||++.+
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 99999998774 59999999999999999743222 111111 11001348899999999999997779999999977
Q ss_pred CcccccCCCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 1005 ECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1005 ~~~~~~~~~~~----h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
+.+..+....+ ..+.+.+++|+|-.-+||+|+.|.+|.||.....+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 76655443221 25678999999999999999999999999877654
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=2.7e-14 Score=143.54 Aligned_cols=240 Identities=14% Similarity=0.214 Sum_probs=183.4
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--ccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~ 917 (1135)
...+..+.|..|...|..|+....++|+................|-.+-|+. .++|..+.+ +.+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456778899999999999966678888876544222232334566777876 466666655 35999999888877
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-E--EC
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 994 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~--~d 994 (1135)
..+. ....|.+|.+. .+.|+.+-.+. |+|||+++.+.+........+ ..++.++.+++.+.+++. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-----~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-----PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCC-----ccceEeeccCCCCceEEecCCCCC
Confidence 7765 44679899985 45677666655 999999998755432222111 145667777777889998 3 46
Q ss_pred CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEecCCCceeeccCCCcccCccccCCCCCC
Q 001157 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 995 ~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~-V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
|.|.+||. +.+.+..+. .|.+++.+++|++||.+|||+++.|+ |+|+.+.+|+.+.+++...+ + ..
T Consensus 153 GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~--------~~ 220 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P--------VS 220 (391)
T ss_pred ceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e--------eE
Confidence 89999999 777766664 56999999999999999999999998 79999999999999986533 2 56
Q ss_pred cEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+.+++|+| ++.+|++.+..++|+++.++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 88999999 88999999999999999998755
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=3.1e-14 Score=163.45 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=183.0
Q ss_pred ccccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCC----CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|+..|..++.+++. .++++|+.||+|++|+...- ...+...++..-...+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 67799999999988755 99999999999999998642 22233333333467899999999999 7899999999
Q ss_pred EEEEEcCCC--e-----eEEEecC-CCCCeEEE-EeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEE
Q 001157 479 IKVWDVVAG--R-----KQYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMM 547 (1135)
Q Consensus 479 i~iwd~~~~--~-----~~~~l~~-h~~~v~~l-~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~ 547 (1135)
|++.++... + +.+.... ..+.+.++ ++........++.+..-+.|..||++...... ......+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 1111111 22334444 34333222378888899999999998776654 344557799999
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC---CEEEEEe--cCCeEEEEECCCCee
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~dg~i~iwd~~~~~~ 622 (1135)
+.+|.+.+++.|+. .|.+.+||++-+.++..+......++..+..+|-. ...++++ ..+.|.+|++.+|.+
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999974 78899999999999888776555577777776643 3555544 578899999999877
Q ss_pred eEEEeCCCCC-----------------CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..++-...+. .......+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6666433110 01122334445668889999999999998766
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.3e-14 Score=166.03 Aligned_cols=235 Identities=11% Similarity=0.105 Sum_probs=163.7
Q ss_pred CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCcee
Q 001157 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1135)
Q Consensus 368 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~ 444 (1135)
+..|.+||....... .+..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755421 145678889999999999999988654 479999998875321
Q ss_pred eeeEeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEE--EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cC
Q 001157 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-ID 520 (1135)
Q Consensus 445 ~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~d 520 (1135)
...+.+| ...++|+|||+ .|+.+ +.++.+.|| |+.++. ...+..+...+....|+|++ ..|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233343 44689999999 55554 467766555 665555 45666777778889998865 6665544 67
Q ss_pred CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
|...+|+++..........+.. ...+|+|||++++..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222322 45789999999988753 23777999988765333222 23457899999
Q ss_pred CEEEEEecCCeEEEEEC--CCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++|+.++.++.+.+|.+ .+++.+..+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998998888875 35777777765543 5788899874
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.1e-13 Score=152.23 Aligned_cols=323 Identities=12% Similarity=0.121 Sum_probs=200.9
Q ss_pred cEE-EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc
Q 001157 512 QFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 512 ~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
+++ ++-..++.|.+.|..+.+.+..+.........+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 344 56667899999999998888888776555566889999999998863 6789999999999999988755 4
Q ss_pred eeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCC-----CCCcCeEEEecCCCEEEEE-eCCCcEEEEECCC
Q 001157 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1135)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~ 663 (1135)
...+++++||++++++. .++.+.++|..+.+.+..+..... ...+.++..+|....++.. -+.+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999999876 789999999999999998864421 2245677777877754444 4457777777654
Q ss_pred cchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccc
Q 001157 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
...+...
T Consensus 160 ~~~~~~~------------------------------------------------------------------------- 166 (369)
T PF02239_consen 160 PKNLKVT------------------------------------------------------------------------- 166 (369)
T ss_dssp SSCEEEE-------------------------------------------------------------------------
T ss_pred cccccee-------------------------------------------------------------------------
Confidence 4111100
Q ss_pred cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee-cccceeEEEeecccCCCCCCcccccccceecc
Q 001157 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1135)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 822 (1135)
.+. .........|+|++++++++ ..++.+-++|..+.+. +..
T Consensus 167 -------------------~i~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~ 209 (369)
T PF02239_consen 167 -------------------TIK-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VAL 209 (369)
T ss_dssp -------------------EEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEE
T ss_pred -------------------eec-----ccccccccccCcccceeeecccccceeEEEeeccceE-------------EEE
Confidence 000 11234568899999987664 4457788887654221 111
Q ss_pred CCCCCccccCCCCCCCCCCCeeEE---------EeecCCCEEEE-EeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC
Q 001157 823 PPSGTLMTNDINESKPTEESAACI---------ALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~v~~l---------~~s~dg~~la~-~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 892 (1135)
...|... | ..++..+ +.+..+...++ .+.+.+.+||..+.+.++++...... .-+.-+|
T Consensus 210 i~~g~~p--------~-~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP- 278 (369)
T PF02239_consen 210 IDTGKKP--------H-PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP- 278 (369)
T ss_dssp EE-SSSB--------E-ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-
T ss_pred eeccccc--------c-ccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-
Confidence 1111111 1 2222211 12223333322 23556778999999999999976666 7888899
Q ss_pred CCcEEEEE----eCCccEEEEEcccceEeEeecCcc-CceEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccc
Q 001157 893 DNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 893 ~~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~ 961 (1135)
+++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+++..+. .++.|.++|..+.+....
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 88888877 455899999999998888875333 3588999999998654433 344799999999885543
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.8e-13 Score=145.30 Aligned_cols=569 Identities=12% Similarity=0.107 Sum_probs=338.9
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.....|++|+.... ++|+|+.||.++|-.+.+...-... --+...+.-...+.+.||++.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~----~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNK----SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccc----cccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 45789999999887 7999999999999998764321110 001111122223458999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE--EecCCCCCeEEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSV 503 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~l~~h~~~v~~l 503 (1135)
...+|.|.+|-+-.|.-.... .-....+.|.+++|+.||. .|+....||.|.+=.+.. ..+. .+++. ....+
T Consensus 89 SDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdG-NRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDG-NRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeecc-ceecchhcchh--eccce
Confidence 999999999999887644321 1123456789999999999 688888899888766543 3222 23321 23356
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCc-------eEE----ecCCCCeEEEEEEc--------CCCCEEEEEeeCCC
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVD----YDAPGNWCTMMAYS--------ADGTRLFSCGTSKE 564 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~----~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~ 564 (1135)
.|+++. ..++.+-.+|.+.++|....-. ... +......+..+.|. ||...++.+..
T Consensus 163 ~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~--- 237 (1189)
T KOG2041|consen 163 LWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA--- 237 (1189)
T ss_pred eecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---
Confidence 677654 6777778889999998753211 111 11122234455552 46777888764
Q ss_pred CCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecC---------CeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 565 GESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 565 ~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.|.+.+..-.+ ..++. +... -.+....|+++|..|+.+|.+ +.|.+|.. -|+.+.+++..+. .
T Consensus 238 -nGr~QiMR~eND~~Pvv-~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 238 -NGRMQIMRSENDPEPVV-VDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--C 310 (1189)
T ss_pred -CceehhhhhcCCCCCeE-Eecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--e
Confidence 55565554332 22322 2221 156778999999999998744 24566554 4677788877655 7
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCC
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1135)
|++++|-..|-.+|.+ .|+.|.+=++.... ....+...-.. ..+.+.
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~TvVy-----------------------------~y~~~e-- 357 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEETVVY-----------------------------VYQKEE-- 357 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccc-eEEEeeeEEEE-----------------------------EEccCC--
Confidence 8999998888777765 46688776665431 11111110000 000000
Q ss_pred CCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
.-.-.|.+||..+....-+. -....+++++.+--.|+.-..+|
T Consensus 358 ---------------------------~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~ 400 (1189)
T KOG2041|consen 358 ---------------------------LPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDG 400 (1189)
T ss_pred ---------------------------CcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccC
Confidence 00135778887764332211 12234566666555556555666
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEE
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM 874 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~ 874 (1135)
.+.-++.-.+.. ..+...+-+. -|..+. . . -..|.-.-..-++.+++.+|...+.+|.....+..
T Consensus 401 ~i~e~s~le~~~-------~~~~l~LCNS-IGT~lD----~--k-ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~ 465 (1189)
T KOG2041|consen 401 VIPEYSTLENRS-------RVYFLQLCNS-IGTSLD----Y--K-YTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFN 465 (1189)
T ss_pred CCcchhhhhccc-------ceEEEeeecc-cCCcCC----C--C-cceeeeeEEEecceEEEEeccccEEEEEEeccchh
Confidence 655442111000 0000000010 011110 0 0 11122222233778889999888999987655443
Q ss_pred EEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 875 TMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 875 ~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
..+.+ +...- |+-| ..-+|+.|+++. .. ..++.|..++|.+++.| .++|..+-..|.|.-+
T Consensus 466 s~l~~~k~rkegr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ry 529 (1189)
T KOG2041|consen 466 SVLAGVKIRKEGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRY 529 (1189)
T ss_pred hhhhhhhhccccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEE
Confidence 33322 22111 3321 222455665442 11 35678889999999886 5788889999999999
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec----cCCcccccCCCCCCCCCeEEEEEc
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS----KLECSRSWSPKDALPAPISSAIYS 1026 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~----~~~~~~~~~~~~~h~~~i~~~~~s 1026 (1135)
.+.+........+. ..+..++...+...+++ -.-|.+.+.|+ ++..+..+.... ...|+.+.|.
T Consensus 530 Sl~nv~l~n~y~~n---------~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa 598 (1189)
T KOG2041|consen 530 SLNNVVLTNSYPVN---------PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWA 598 (1189)
T ss_pred EecceeeeeccccC---------chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhc
Confidence 99885532221111 45778888888888888 45677777776 344444332222 5678999999
Q ss_pred cCCCEEEEEecCCcEEEEecCCC
Q 001157 1027 CDGLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 1027 ~dg~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
.|...|++--+...++|++-.+-
T Consensus 599 ~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 599 QDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred cCCchHHhhhhhceEEEecCcCc
Confidence 88877766666666777766543
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.5e-14 Score=142.28 Aligned_cols=237 Identities=13% Similarity=0.150 Sum_probs=180.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
..+|+|.+|++|+. .+|++.....|.||.....+.-. ....+..|...|++|.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 46899999999997 68888889999999987665211 12247789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE----EEecCCCCCeE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~l~~h~~~v~ 501 (1135)
|+.|...++|....+...++...+..|+..++++.|+|.+. .+++||.-+.|.||=.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777778888999999999999999 7999999999999987654322 12235778899
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeC-----CC-------------CCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DY-------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
++.|+|++ -+|++|+.|+..|++.. +. ++....+....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999976 78999999999999853 11 1112233456779999999999999998874
Q ss_pred CCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeCCCCEEEEEecC
Q 001157 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1135)
+..+.+-|..... .+........ +..++.|-.+. .++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 2333333332 55666665443 34444444
No 211
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.63 E-value=7.4e-12 Score=142.91 Aligned_cols=151 Identities=17% Similarity=0.273 Sum_probs=124.2
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d 429 (1135)
.-+.++++.- .+++|+.-+.|.+|+....+.-. .+.+|.+.|.++.|+-||.++++.++|
T Consensus 137 ~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdD 196 (967)
T KOG0974|consen 137 LIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDD 196 (967)
T ss_pred EEEeccCcEE-EEEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecC
Confidence 3345566664 68899999999999987221110 278999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC-CCeEEEEeccC
Q 001157 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHK 508 (1135)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~-~~v~~l~~~~~ 508 (1135)
.++++|++++.+.... ..-+|...|+.+.|.|+ .++|++.|.+.++|+ ..+..+..+.+|. ..|+.++..+.
T Consensus 197 RsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 197 RSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred cceeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcCC
Confidence 9999999999877652 44589999999999987 489999999999997 4566666888875 56888888765
Q ss_pred CCccEEEEEEcCCeEEEEeCC
Q 001157 509 ESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~ 529 (1135)
. ..++|++.|+.+++||+.
T Consensus 270 ~--~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 270 V--IIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred c--eEEEeeccCcchhhhhhh
Confidence 5 789999999999999864
No 212
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.63 E-value=2.3e-11 Score=125.99 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=105.4
Q ss_pred CceEEEEEeCCcceeeeecccc-eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC
Q 001157 773 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d 851 (1135)
..|.-..+..+++.++.+..|| .+-||+.. +++.-. ... . -+.|.++..++|
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr-~e~---~-lg~I~av~vs~d 412 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKR-IEK---D-LGNIEAVKVSPD 412 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEE-eeC---C-ccceEEEEEcCC
Confidence 3455555666666788888887 77777653 332211 111 2 577999999999
Q ss_pred CCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc----cEEEEEcccceEeEeecCccCc
Q 001157 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNR 926 (1135)
Q Consensus 852 g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~ 926 (1135)
|++++++. ...|.+.|+++++....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++....-. ..+.
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 99999998 57899999999988776666677899999999 999999987665 68999999988655433 2222
Q ss_pred eEEEEEcCCCCeEEEEc
Q 001157 927 ITGLAFSPTLNALVSSG 943 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~ 943 (1135)
=.+-+|.||+++|.--+
T Consensus 491 DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccCcccCCCCcEEEEEe
Confidence 34678999999876543
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=1.5e-12 Score=143.26 Aligned_cols=332 Identities=14% Similarity=0.158 Sum_probs=197.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
+++++-..++.|.+.|..+.+.+.++......-..+.+++++ +++++++.||.|.++|+.+.+.+..+.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 356777789999999999999999998654443456676654 8899999999999999999998877765 4457889
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc------CCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCC
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNM 620 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1135)
++|+||++++++.. ..+.+.++|.++.++++.+.... ...+..+..+|....++..- +.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999998764 47789999999999998876542 22466787888888555544 5588888888776
Q ss_pred eeeE--EEeCCCCCCCcCeEEEecCCCEEEEE-eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 621 NMLT--TVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 621 ~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
+.+. .+... .......|+|++++++.+ ..++.|-++|..++ .....+...... .
T Consensus 161 ~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p-~------------------ 217 (369)
T PF02239_consen 161 KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKP-H------------------ 217 (369)
T ss_dssp SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSB-E------------------
T ss_pred cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccc-c------------------
Confidence 5443 33322 245678999999987665 45779999998877 333322110000 0
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
.....+ ++. ...+.+..
T Consensus 218 ------------------------------------------------~~~~~~--------------~ph-p~~g~vw~ 234 (369)
T PF02239_consen 218 ------------------------------------------------PGPGAN--------------FPH-PGFGPVWA 234 (369)
T ss_dssp ------------------------------------------------ETTEEE--------------EEE-TTTEEEEE
T ss_pred ------------------------------------------------cccccc--------------ccC-CCcceEEe
Confidence 000000 000 00001111
Q ss_pred EEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
.+..+...++.-+... +.+|+..+.+.+...-.. ... .-+..+||++++.+
T Consensus 235 --~~~~~~~~~~~ig~~~----------------------v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwv 285 (369)
T PF02239_consen 235 --TSGLGYFAIPLIGTDP----------------------VSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWV 285 (369)
T ss_dssp --EEBSSSSEEEEEE--T----------------------TT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEE
T ss_pred --eccccceecccccCCc----------------------cccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEe
Confidence 1111111111111111 223444444433322111 223 67888999999999
Q ss_pred E---e--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCCCCcEEEEEeCC--ccEEEEEcccceEeEeec
Q 001157 858 A---S--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 858 ~---s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~~~~l~ 921 (1135)
. + .++|.++|.++.+.+.++... ...+..+.|++ +|+.+....++ +.|.+||..|.+.+.++.
T Consensus 286 d~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp E-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 8 3 378999999999888887532 23589999999 67755544444 369999999999998887
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2e-13 Score=136.56 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=190.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 424 (1135)
+..+..++|++.-- -+|++..|..|++||-.. ++... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceee
Confidence 34678889998553 467888999999999765 22111 01224557999999995 55788
Q ss_pred EEeCCCeEEEEEcCCCCce-----------eeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CCcEEEEEcCCCeeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGEL-----------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~ 492 (1135)
+|+..| |+||........ .+...-.+| .+|+++.|.+||. .+++++. |..|.|||+.+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887776 999987532111 111123355 5899999999999 6777764 67999999999887765
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
....-+.+.-+.|+|++ ++|++++-|+..++|+....-.........+.|...+|+|+|++|+.... +...++-.
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEE
Confidence 54456778899999876 89999999999999965443333334444559999999999999876553 22223221
Q ss_pred eCC--CCc-----------eeEEe------ec--ccCCceeEEEEeCCCCEEEEEecC--------CeEEEEECCCCeee
Q 001157 573 NES--EGA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNML 623 (1135)
Q Consensus 573 d~~--~~~-----------~~~~~------~~--~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~ 623 (1135)
... .+. ++..+ .+ .-.+.+.+++|.|.|+++++.-.. ..|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111 100 01111 11 012367789999999999985422 34677887765544
Q ss_pred EEEe--CCCCCCCcCeEEEec---CCCEEEEEeCCCcEEEEECC
Q 001157 624 TTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 624 ~~~~--~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.... ...+. ....+.|+| ++.+|..+-..|.+.-|.+.
T Consensus 389 els~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 4432 11121 245677776 67788888888888877653
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.6e-15 Score=152.86 Aligned_cols=197 Identities=13% Similarity=0.163 Sum_probs=156.9
Q ss_pred eEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC
Q 001157 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 922 (1135)
.+++|+.||..+++++ ||++|||+..+...+.....|...|.++.||| |+++|++.+.| ..+||++.++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 899999999977776653
Q ss_pred c--cCceEEEEEcCCC-----CeEEEEcCCCcEEEEeCCCccccccee-eecCCCCCCCCCCceeEEECCCCcEEEE-EE
Q 001157 923 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLVGETKVQFHNDQTHLLV-VH 993 (1135)
Q Consensus 923 h--~~~i~~l~~s~d~-----~~l~s~~~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~ 993 (1135)
. ......+.|+.|+ ...+....-+.|+.|++.....-.... .+....+ ..|++++.|+||++++. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2346678888877 333444455678888877655321111 1111222 36899999999999999 57
Q ss_pred CCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 994 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 994 d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
||.|.||+. +.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 666655443 56799999999999999999999999999887764
No 216
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.4e-16 Score=170.08 Aligned_cols=301 Identities=17% Similarity=0.235 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 001157 168 SSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPS 247 (1135)
Q Consensus 168 ~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~sl~~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~~~~~~~ 247 (1135)
+-.|.+|+.|+++.|+.+|+.+.++++++|||.+|+|+.++.-...|.++...+ -.
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl----~~-------------------- 1067 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRL----GT-------------------- 1067 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcc----cc--------------------
Confidence 346999999999999999999999999999999999999321111111111111 00
Q ss_pred cccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhHHhhcccCCcceeeecCCCCCC
Q 001157 248 PGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTP 327 (1135)
Q Consensus 248 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1135)
+.-.+. .+.+.-...+.+.++.+.+.
T Consensus 1068 --------------------------------------rel~~~-y~gV~g~~~dr~~IFSRFr~--------------- 1093 (1516)
T KOG1832|consen 1068 --------------------------------------RELQSF-YSGVHGNRRDRQFIFSRFRS--------------- 1093 (1516)
T ss_pred --------------------------------------hhhcCc-ccccccCcccchhhHhhccc---------------
Confidence 000000 00111122233334433332
Q ss_pred ceeecCCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
.+++. |....+|++||-+.+ .|++|+..|.|+++++.+|..... ...
T Consensus 1094 ------------w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~nc 1141 (1516)
T KOG1832|consen 1094 ------------WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNC 1141 (1516)
T ss_pred ------------chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccc
Confidence 23344 667899999999997 688999999999999999987654 567
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
|..+|+-+.=|.||..+.+.+.-. -..+|++..-- .....+. .-.++.|+...++ . +.|..-..+.+||+
T Consensus 1142 H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1142 HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDV 1213 (1516)
T ss_pred cccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH-H-HhcccccceEEEec
Confidence 999999999999999887765543 47899987622 2212322 3467889877553 2 33444457899999
Q ss_pred CCCeeEEEe-cC---CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 485 VAGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 485 ~~~~~~~~l-~~---h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
+++..+.++ .+ .+..-+...|+|.. .+++- || .+||++..+.+..+..-... -.-.|+|.|..++..+
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 999887663 22 22233667788875 44432 34 46999988776655443321 2235899999999875
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
.|||+++.+.++....-.+ ..+.|+..|+.++..
T Consensus 1286 ---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 ---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 4799999998887776543 457799888877654
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-13 Score=157.46 Aligned_cols=269 Identities=13% Similarity=0.188 Sum_probs=184.9
Q ss_pred cceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..|..+..+. |...|..++.+++..-++++||.||+|++||...-..-. ..++ ....+...++.+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4566777777 899999999988774489999999999999986422110 0010 00112335678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC--Cce--eeeeEeecC--CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 414 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GEL--RQHLEIDAH--VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 414 v~~spdg~~la~~~~dg~i~iwd~~~~--~~~--~~~~~~~~h--~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+.+.+.|+.+|+++.||.|++.+++-. +.. .+....+.+ ...|..-+|....+...++.+..-+.|..||++..
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762 111 111111122 22344445554443336788888899999999877
Q ss_pred eeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-CCeEEEEEEcC---CCCEEEEEee
Q 001157 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~---~~~~l~~~~~ 561 (1135)
....+++ -..+.|++++.+|.. +++++|+..|.+.+||++-...+...... ..++..+..+| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 6655543 346889999998876 79999999999999999987777655432 34666666655 3446666653
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCC------------------ceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
.+.+.|.+|++.+|.....+...... ......+...+..+++|+.|..|+.||...
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 25678999999998776666543110 111233444457889999999999999754
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=8.7e-14 Score=147.19 Aligned_cols=286 Identities=12% Similarity=0.149 Sum_probs=213.0
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc--CCCeeEEE
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 415 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 415 (1135)
++++.|.+...-+.|..||||++++|+|..--.|++||+..-.... ..| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEE
Confidence 3455667788899999999999999999999999999998755432 223 23466666
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
.|.|-..++.-..|.+|.+-..-. .... ..+ ...-.+++++.-.-. |+.++....|+-++++.|+.+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy~--~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eeee--eec---CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 677777777777888877654322 1110 011 112345555544432 44444556799999999999999988
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------CC-----eEEEEEEcCCCCEEEEEeeCCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GN-----WCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~-----~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+.++++..++.. .+|++|+.+|.|.+||.++......+... .+ .|+++.|+.+|-.+++|+.
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999998876 78999999999999999887765544322 12 5999999999999999875
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCC--CCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
.|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.... .++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeec
Confidence 7889999999988876655444447888999776 3455554 56789999999999998887543 488999999
Q ss_pred CCCEEEEEeCCCcEEEEECC
Q 001157 643 EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~ 662 (1135)
++.+++++-.+..+..|-+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999888877776554
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1.5e-11 Score=140.41 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=150.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC-----CeeEEEEcCCCCE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGLM 422 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~ 422 (1135)
.|....+.-+.+ .++.++.++.+.+||...+..... ..+.. ...-+.++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 444455666665 567778889999999987655432 01111 1223446777789
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVY 501 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~ 501 (1135)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|+|+++++|++++++... +.-+|.+.|+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999988433222 5779999999999999999 99999999999999999988776 6678999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.++|+|. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++||+..
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 9999874 8999999999999976543333 45544 448999999998888888874 78899999764
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7e-14 Score=160.00 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=152.1
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..++.+|...........+...+.+++|||||++++.++..+ ..|++||+.+++... +
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~--------------------l 243 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV--------------------V 243 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------E
Confidence 344555544444333345778899999999999655443322 379999998875321 1
Q ss_pred cccCCCeeEEEEcCCCCEEEEEe-CCCeEEEE--EcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~-~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
....+...+++|||||+.|+.++ .+|.+.|| |+.++. .. .+..+...+.+..|+|||+. +++++..++...|
T Consensus 244 ~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I 318 (429)
T PRK01742 244 ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQV 318 (429)
T ss_pred ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceE
Confidence 11122344689999999998875 57766555 555544 22 45567777889999999994 2334456788888
Q ss_pred EEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 482 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 482 wd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
|++.. +.....+ ++.. ....|+|++ +.|+.++.++ +.+||+.++........ .....+.|+|||++++.++
T Consensus 319 ~~~~~~~~~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 319 YRMSASGGGASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEEECCCCCeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEE
Confidence 88753 2222333 3443 456777755 7888777765 55599987765432222 2335678999999999887
Q ss_pred eCCCCCceEEEEeC--CCCceeEEeecccCCceeEEEEeCC
Q 001157 561 TSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~s~~ 599 (1135)
. ++...+|++ .+|+..+.+..+.. .+...+|+|-
T Consensus 391 ~----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 391 T----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred c----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 5 333444543 35778888877665 6778889874
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=6.5e-12 Score=124.13 Aligned_cols=240 Identities=12% Similarity=0.141 Sum_probs=169.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEE
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWD 483 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd 483 (1135)
...+++|+.|...+++|..+| .+||+.+.-+..... .+..-.-.+.-+-|- .+. +.+.||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998777 899998763322111 111111223333342 221 23334433 4799999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCCceEEecCCC--CeEEEEEEcCCCCEEEEEe
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 560 (1135)
=...+++.++. ...+|.++.+.++ .++.. ..+.|.+|... +.+....+.... ....+++-..+..+|+.-|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 77778888875 7789999998653 34443 57899999887 444444443322 2333333333333444433
Q ss_pred eCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCEEEEEecCCe-EEEEECCCCeeeEEEeCCCCCCCcCe
Q 001157 561 TSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
-.-|.|.+-|+...+. ...+..|.. .|.|++.+-+|..++++|..|+ |||||..+|+++..+.-......|.+
T Consensus 156 ---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 156 ---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred ---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 3568999999986555 466777776 8999999999999999998887 79999999999999976655568999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++|||+..+||++++.|++.|+.+...
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999999999999999999999998654
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=6.2e-13 Score=131.23 Aligned_cols=243 Identities=17% Similarity=0.216 Sum_probs=169.5
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCC--eeEEEEeCCCCcEEE-EEeCC------ccEEEEE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIA-IGMED------SSVQIYN 910 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la-sg~~d------g~v~iwd 910 (1135)
+....+++|..|...+++|.+...+||+.+..+.......+.+. +..+-| ..++|| +|+.+ +.|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEe
Confidence 34556799999999999999989999999875543333322322 333333 233444 34433 4799999
Q ss_pred cccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 911 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 911 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
=...+++.++. ...+|.++.++++ .|+.+- .+.|++|...+ .+.+. .+...... .+..+++=+.+..+|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~--~~et~~NP----kGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNP----KGLCSLCPTSNKSLL 151 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee--eeecccCC----CceEeecCCCCceEE
Confidence 77777888876 5678999999866 466554 55699999984 23221 22222211 122333323333445
Q ss_pred EE-E-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEecCCCceeeccCCCcccCcccc
Q 001157 990 LV-V-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1135)
Q Consensus 990 ~~-~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~-V~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
|. | .-|.|.|-|+..........-.+|.+.|.+++++-+|.+|||+|..|+ |+|||..+|+.+.+++..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-------- 223 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-------- 223 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--------
Confidence 54 4 468999999933333111112467999999999999999999999998 899999999999998744
Q ss_pred CCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcc
Q 001157 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1067 ~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
.....+.+++||| +..+|+++|+.|+|+++.+.....
T Consensus 224 -~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 224 -VDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred -CchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCC
Confidence 2237789999999 889999999999999999976553
No 223
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=3.2e-10 Score=117.72 Aligned_cols=522 Identities=15% Similarity=0.140 Sum_probs=274.3
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEE----E--eCCCcEEEEEcCCccccccccceeecccccccccccccccccC
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLV----G--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~----g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 408 (1135)
..++..+...|-+-|+...|+|||+.++.+ | ...+.+.+.+.+.|+..+- + +-|
T Consensus 67 k~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-T-----------------yfG-- 126 (668)
T COG4946 67 KDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-T-----------------YFG-- 126 (668)
T ss_pred ccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-E-----------------Eec--
Confidence 456667777788899999999999965542 1 2334567777777765431 0 112
Q ss_pred CCeeE-EEEcCCCCEEEEEeCCCe----EEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC-----
Q 001157 409 ISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----- 477 (1135)
Q Consensus 409 ~~V~~-v~~spdg~~la~~~~dg~----i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~----- 477 (1135)
..-+. ..|.|||+.+++...-.- -.+|.+..... .. .+ .-++.+.+.+- ||. ++.|-.--
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntydLP~W 197 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYDLPHW 197 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCcccCccc
Confidence 23333 459999999988744322 23343332211 11 11 23455555553 443 33321110
Q ss_pred -------cEEEEEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC--eEEEE
Q 001157 478 -------MIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMM 547 (1135)
Q Consensus 478 -------~i~iwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~ 547 (1135)
.=++|--.. |+....+-.-.+.|.+-.+.. + ........||.=.+|..+-...-. ..|.. ...+-
T Consensus 198 K~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldGkDl--rrHTnFtdYY~R 272 (668)
T COG4946 198 KGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNFTDYYPR 272 (668)
T ss_pred ccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCCchh--hhcCCchhcccc
Confidence 224554333 222233322233333322211 1 222223344444444333222111 11211 22333
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec---c---cCC-cee---EE-EEeC-CCCEEEEEecCCeEEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLG---VV-QFDT-TRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~---~~-~~s~-~~~~l~~~~~dg~i~iw 615 (1135)
-.+.||+.++... .|-|+++|..+.++..---+ . ... .+. -+ .|++ +|++++..|. |...+.
T Consensus 273 ~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 273 NANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 4567999988653 45599999887554321111 1 000 000 01 1332 5777777764 566666
Q ss_pred ECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC-cEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccc
Q 001157 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1135)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1135)
+...+-.++.- +...|.-..+..+++-++.|..|| .+-|+|..+++ . +.+..
T Consensus 347 ~~~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~-kr~e~--------------------- 399 (668)
T COG4946 347 RPWDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-V-KRIEK--------------------- 399 (668)
T ss_pred CCCCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-E-EEeeC---------------------
Confidence 65555444331 122466667777788888999998 89999988772 1 11111
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCc
Q 001157 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1135)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1135)
.-+.
T Consensus 400 ----------------------------------------------------------------------------~lg~ 403 (668)
T COG4946 400 ----------------------------------------------------------------------------DLGN 403 (668)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 2245
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~ 854 (1135)
|.++..+++|+.++++.....+.+.|+ .+|.+....-.. .+-|+..+|+|++++
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS~----~~lItdf~~~~nsr~ 457 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKSE----YGLITDFDWHPNSRW 457 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEe----------------------cCCCeeEecccc----cceeEEEEEcCCcee
Confidence 788999999999988887777776665 344433332222 677999999999999
Q ss_pred EEEEe-C----CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe--ecCccCce
Q 001157 855 VMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--LKGHQNRI 927 (1135)
Q Consensus 855 la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~i 927 (1135)
+|-+- + ..|+++|+.+++....-. ....=.+-+|.| ++++|..-+.-. .|..+...+.. +..|..+-
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPy 531 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPY 531 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccce
Confidence 99986 4 459999999887755433 444446678999 888887654211 11111111111 11111111
Q ss_pred EEEE----EcCCCCeEEE-EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEE-----------E
Q 001157 928 TGLA----FSPTLNALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-----------V 991 (1135)
Q Consensus 928 ~~l~----~s~d~~~l~s-~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~-----------~ 991 (1135)
..+- .||-.+..-. -+.++.+-+=+++... . .+..-.+ .-..++=-.+|+.+. .
T Consensus 532 lv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~---e-P~pVee~------dY~sI~~lk~~killfs~pi~Gefs~y 601 (668)
T COG4946 532 LVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV---E-PFPVEEG------DYRSIAGLKNGKILLFSYPIHGEFSQY 601 (668)
T ss_pred EEEecCCCCChhhcCchhcCccccceehhhhcccc---c-ccccCcc------ceeEeeecCCCeEEEEEeeccchhhhh
Confidence 0000 1121111111 1122322222222110 0 0000000 001111111221111 1
Q ss_pred --E--ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 992 --V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 992 --~--~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
+ .-|.+.+||++.+....+ ...++++..|+||+.+.. -.||.+++++++.
T Consensus 602 y~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 602 YWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 236789999977776665 567999999999999988 7899999999986
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=9.4e-15 Score=150.55 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=217.6
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
.+...+.|+.+|++ ++.|+..|.|..+|+.+++..... .-...|..+.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence 46788999999985 556778999999999998876531 123468899999999999988
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
....+.|||-.. ..+.+ +..| ..|..+.|-|.-- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+
T Consensus 189 -QK~y~yvYD~~G-tElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 -QKKYVYVYDNNG-TELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred -hhceEEEecCCC-cEEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 566799999654 44553 3333 4689999999865 89999999999999999999999998888999999988
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.+ ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+|+++.|. |..++|||++....+.++...
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC
Confidence 876 78889999999999999999999999999999999999999999999986 778999999988877776662
Q ss_pred cCCceeEEEEeCCCCEEEEEecCCeEEEEEC-CCC--eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
. ....+++|..| +++.+....|.+|.- -.+ ..-...-.|.-...|..+.|.|-...|-+|...|.-.+.-...
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 56778888766 444555668999952 221 1111111222234789999999888888887776655554444
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
|
T Consensus 411 G 411 (545)
T KOG1272|consen 411 G 411 (545)
T ss_pred C
Confidence 4
No 225
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.57 E-value=7.1e-09 Score=126.91 Aligned_cols=506 Identities=13% Similarity=0.133 Sum_probs=285.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
..+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||++ .|+....++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 444432 22 2223466899999999999 67777778888877
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--------------eEEecCCCCeEEEEE
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------------RVDYDAPGNWCTMMA 548 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--------------~~~~~~~~~~v~~~~ 548 (1135)
+ ++...+....-+.... +. ...++.|..+.=.-+.=..++. ...+. ....-..++
T Consensus 148 t-~~fd~i~E~~l~~~~~--------~~-~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDF--------GE-SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred e-ccceEEEEeecCcccc--------CC-CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 5 5566555443221110 00 1233332211100010000000 01111 333556889
Q ss_pred EcCCCCEEEEEeeCCC-C-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---CCeEEEEECCCCeee
Q 001157 549 YSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~ 623 (1135)
|-.||.++++.+.+.. + ...+++|+-+ |.+..+-. ...+--.+++|-|.|+++++... ...|.+|.-+. -.-
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-Lrh 293 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRH 293 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEe
Confidence 9999999998876333 2 4789999965 66544443 22223456899999999998753 45677777543 222
Q ss_pred EEEeCC--CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhe-eeccCcccccCCCCCCCCcCCCCccccCCCCC
Q 001157 624 TTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL-RMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 624 ~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1135)
..+... .....|..+.|++|+..||....| .|.+|...+-.-.+ +.+...
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~-------------------------- 346 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFS-------------------------- 346 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEcc--------------------------
Confidence 233322 233478999999999999998766 49999876651111 111100
Q ss_pred ccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEE
Q 001157 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
....+..+.|
T Consensus 347 ----------------------------------------------------------------------~~~~~~~~~W 356 (928)
T PF04762_consen 347 ----------------------------------------------------------------------SSESVNFVKW 356 (928)
T ss_pred ----------------------------------------------------------------------CCCCCCceEE
Confidence 0111222555
Q ss_pred eCC-cceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEE
Q 001157 781 TNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSA 858 (1135)
Q Consensus 781 s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~ 858 (1135)
+|. ...|...+.+|.+..+++. |+...+.. .+| |...+++.
T Consensus 357 dpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~~-------------------~~~~D~g~vaVI 399 (928)
T PF04762_consen 357 DPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSPG-------------------SSPNDNGTVAVI 399 (928)
T ss_pred CCCCCCEEEEEecCCcEEEEEEE------------------EEEEecCC-------------------CCccCceEEEEE
Confidence 553 3345555555666665542 11111100 011 22234444
Q ss_pred eCCeEEEEeCCCceE-----EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe--------Eeec----
Q 001157 859 SGGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--------TKLK---- 921 (1135)
Q Consensus 859 sdg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--------~~l~---- 921 (1135)
++.++.+-.+...-. ...+. -...|.+++|++ ++..+|+...||.|.+|........ ..+.
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSM 477 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccc
Confidence 445566666553211 12222 347899999999 6767899999999999986543211 1111
Q ss_pred ------CccCceEEEEEcCCCCeEEEEcCC---CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-
Q 001157 922 ------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 991 (1135)
Q Consensus 922 ------~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~- 991 (1135)
.-...+..++|..+...++....+ ..+.++++...+.. .......... ..+..+...++...++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~q 552 (928)
T PF04762_consen 478 DISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS--ASVESSTEVD---GVVLIISSSPDSGSLYIQ 552 (928)
T ss_pred cccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc--eeEEEEeccC---ceEEEEeeCCCCcEEEEE
Confidence 123457888998877766665554 57888888543321 1111111111 34455555555553444
Q ss_pred EECCcEEEEeccCCccc--ccCCCCCCCCCeEEEEEccCCC---EEEEEecCCcEEEEecCCCceeeccCCCcccCcccc
Q 001157 992 VHESQISVYDSKLECSR--SWSPKDALPAPISSAIYSCDGL---LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1135)
Q Consensus 992 ~~d~~i~vwd~~~~~~~--~~~~~~~h~~~i~~~~~s~dg~---~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
..+|.+..++..+.... .+.. ..+-..++...+.. .++.-+..|.+++ ++..++
T Consensus 553 ~~~G~v~~~~~~~~~~~~~~fp~----~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------------- 611 (928)
T PF04762_consen 553 TNDGKVFQLSSDGELSQIVKFPQ----PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------------- 611 (928)
T ss_pred ECCCEEEEeecCCCccccccCCC----CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe-------------
Confidence 77898887776333222 2211 22223333333333 3443344555554 344432
Q ss_pred CCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1067 SSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1067 ~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
..++++..++ .+|+..+....++..++.
T Consensus 612 ----~~~tSF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 612 ----SNCTSFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ----cCCceEEEEc---CEEEEEecCceEEEEECc
Confidence 3455555543 677777788999999998
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=3.1e-13 Score=133.20 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=180.2
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1135)
-..+|+|.+|++|++.+|++.....|.||.....+......++..|...|++++|+|... .|++|+.|+.-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998886777778999999999999999998 79999999999999983
Q ss_pred CCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE----EecCCCCeEEEEEEcCCCCEEEEE
Q 001157 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 486 ~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
.++ +.-.+..++...+++.|+|.+ +.+++||.-..|.+|-++..+.-. .-......|.++.|+|++-.++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 343 334556799999999999987 799999999999999776544321 223345689999999999999988
Q ss_pred eeCCCCCceEEEEeC-----C-------------CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 001157 560 GTSKEGESHLVEWNE-----S-------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+. |+..+++.. + -|.++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+=|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 75 666777653 1 123334443 233478999999999999999999999999987664
Q ss_pred -eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+..+... ..+..++.|-.+...++ ++.|
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceee-cCCC
Confidence 33333222 13556677766554444 4444
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.1e-12 Score=129.28 Aligned_cols=204 Identities=12% Similarity=0.160 Sum_probs=134.6
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
..+|+++.+.+||..+++++ +..|.|||.+++..+.-.....+.++-+.||| |+.+|..++-|+..++|+.......
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~ 273 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTK 273 (445)
T ss_pred CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhccccee
Confidence 46899999999999999998 67899999999887665544567899999999 8999999999999999954433222
Q ss_pred EeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCccc--ccc--------ee------eecCCCCCCCCCCceeE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEK--LKS--------RF------IQAPAGRQSPLVGETKV 980 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~--~~~--------~~------~~~~~~~~~~~~~v~~~ 980 (1135)
....--.+.|...+|+|+|++|. +++..- ++|.+.-.++ ... .. .....+......++.++
T Consensus 274 erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l 351 (445)
T KOG2139|consen 274 ERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL 351 (445)
T ss_pred cceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence 22222345899999999998755 444443 4444432111 000 00 01112223334678899
Q ss_pred EECCCCcEEEEEECC---------cEEEEec-cCCccccc-CCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEec
Q 001157 981 QFHNDQTHLLVVHES---------QISVYDS-KLECSRSW-SPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 981 ~fspdg~~l~~~~d~---------~i~vwd~-~~~~~~~~-~~~~~h~~~i~~~~~s~---dg~~l~s~~~dg~V~vwd~ 1046 (1135)
+|.|.|.+|++...+ .|..||. +.-.+... ....+ ...-..++|+| +|.+|..+=..|.+.-|++
T Consensus 352 awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 352 AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 999999999995322 2566776 22222211 11111 22244566665 6778888877888888877
Q ss_pred C
Q 001157 1047 E 1047 (1135)
Q Consensus 1047 ~ 1047 (1135)
.
T Consensus 431 ~ 431 (445)
T KOG2139|consen 431 T 431 (445)
T ss_pred E
Confidence 5
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.5e-12 Score=146.69 Aligned_cols=236 Identities=11% Similarity=0.109 Sum_probs=157.5
Q ss_pred cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeee
Q 001157 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~ 446 (1135)
.|.+||........ +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. ..
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l 238 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 238 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ec
Confidence 68888877553221 3346678999999999999987643 457999999887532 22
Q ss_pred eEeecCCCCeeEEEEecCCCceEEE-EEcCCC--cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-Ce
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GK 522 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~-s~~~d~--~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g~ 522 (1135)
..+ .+.+..++|+|||+. |+ +.+.++ .|++||+.+++.. .+..+...+....|+|++ +.|+..+.+ +.
T Consensus 239 ~~~---~~~~~~~~~SPDG~~--La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~ 310 (429)
T PRK03629 239 ASF---PRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS--QNLAYTSDQAGR 310 (429)
T ss_pred cCC---CCCcCCeEECCCCCE--EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC--CEEEEEeCCCCC
Confidence 223 334557899999994 44 334444 5899999888754 444455567888998865 777666654 44
Q ss_pred EEEE--eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 523 IKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
..+| |+.++.. ..+...........|+|||++++..+.. ++...|++||+.++... .+.... ......|+|||
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG 385 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNG 385 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCC
Confidence 4555 6655433 3334444456678999999999876642 23567999999888644 333221 23457899999
Q ss_pred CEEEEEecCCe---EEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 601 NRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 601 ~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
+.|+.++.++. ++++++. +.....+..+.+ .+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 99999886654 6777774 444555554433 567788876
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.4e-13 Score=142.94 Aligned_cols=299 Identities=15% Similarity=0.163 Sum_probs=211.7
Q ss_pred CCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
.|.+.|..+.|...|..+++++.|..|.+||+...+.. .....+ | ...|....|-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SG--H-~~NvfQaKFi 194 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESG--H-CNNVFQAKFI 194 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccc--c-ccchhhhhcc
Confidence 48899999999999999999999999999998654321 111222 5 5555555565
Q ss_pred c--CCCEEEEEe-CCeEEEEeCCC-ceE--EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee---
Q 001157 850 K--NDSYVMSAS-GGKVSLFNMMT-FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--- 920 (1135)
Q Consensus 850 ~--dg~~la~~s-dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--- 920 (1135)
| +.+-+++++ ||.+++=.+.. +.+ ...+..|.++|..++.-|+...-+.+++.|+.+.-.|+..+.....+
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 5 344566666 99998877653 322 34466799999999999977788999999999999999876443332
Q ss_pred cCccC---ceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccc------cceeeecCCCCCCCCCCceeEEECCCCcEEE
Q 001157 921 KGHQN---RITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKL------KSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1135)
Q Consensus 921 ~~h~~---~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 990 (1135)
..+.. ...+++..|-.. .+++++.|..+++||...-... ...+-..+.. .....|++++|+.++.-|.
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~--d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE--DDPVNITGLVYSHDGSELL 352 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc--cCcccceeEEecCCcccee
Confidence 33333 467888888775 7999999999999998753322 1112111221 1226799999997666555
Q ss_pred E-EECCcEEEEeccCCcc------c---cc--CCCCCCC--CCeEEEEE-ccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 991 V-VHESQISVYDSKLECS------R---SW--SPKDALP--APISSAIY-SCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 991 ~-~~d~~i~vwd~~~~~~------~---~~--~~~~~h~--~~i~~~~~-s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+ -.|-.|+++....+.- . .+ ....||. ..|..+-| -|...|+++|+..|.|+||+-.+++.+.-+
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 5 6788999997621111 0 11 1124553 35677765 589999999999999999999999988777
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
. +...-|-|+.-+|.. -.||+.+.|.-|+||-..+.++.+
T Consensus 433 e-----------gDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 433 E-----------GDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred h-----------cccceEeccCCCCCC-chhhccCCccceeeecCCcccccc
Confidence 5 333456677777744 489999999999999996666433
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3.6e-11 Score=130.41 Aligned_cols=521 Identities=11% Similarity=0.134 Sum_probs=312.3
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..++|+ |...|.-+.|+.+.+ -|.++..+|.|.||-+..|.-... .+-...++-|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEeccccc-cccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEc
Confidence 355666 999999999999987 478888999999999988764321 1123456679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-------eeE
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQ 490 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~~ 490 (1135)
.||+.++....||.|.+=.++..+.... ++.+. -...+.|++|.+ .++.+-..|.++++|.+.. .+.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999988887654332 33332 245789999998 5666777899999995422 111
Q ss_pred EE----ecCCCCCeEEEEecc------CCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 491 YT----FEGHEAPVYSVCPHH------KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 491 ~~----l~~h~~~v~~l~~~~------~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.. +......|..+.|.. .++...|+.+..+|.+.+-.-.+......+.. +-.+..+.|+++|..|+.+|
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEcc
Confidence 11 111222355555532 12457899999999999886665555554443 36888999999999999998
Q ss_pred eCCCC----C-ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 561 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 561 ~~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.+.+. + +.|.++. .-|+.+.+++.... .|+.++|-..|-.++.+ .|+.|++=+++-.-.-..+.
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e-------- 346 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE-------- 346 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee--------
Confidence 75432 2 3566665 45888888888666 89999999888766665 68888887766432222221
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
..+.|--.++- .-.-.|.+||..+.++.++...+.... ..+.
T Consensus 347 ~TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~-a~~~--------------------------------- 388 (1189)
T KOG2041|consen 347 ETVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENM-AFYR--------------------------------- 388 (1189)
T ss_pred eEEEEEEccCC----CcceEEEEEecccChhhhhhhcceeeh-heec---------------------------------
Confidence 01111111110 012357799998886666655432211 0000
Q ss_pred CCCCcccCccccCCCcccccCccccccc-cccccccccCcccCCCceeEEEcCC---CC---CCCceEEEEEeCCcceee
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPD---SI---AASKVVRLIYTNSGLSLL 788 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~---~~---~~~~i~~~~~s~~g~~l~ 788 (1135)
+...++... ++.+.-+. +....+....+.+-. .. .-..|.-.-..-++..++
T Consensus 389 -------------------ehCvL~~~~d~~~i~e~s--~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vv 447 (1189)
T KOG2041|consen 389 -------------------EHCVLINRQDDGVIPEYS--TLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVV 447 (1189)
T ss_pred -------------------ccEEEEeccccCCCcchh--hhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEE
Confidence 000011111 12222110 000011111111111 00 111222223334555555
Q ss_pred eecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEe
Q 001157 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1135)
Q Consensus 789 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd 867 (1135)
.++.+ .+.+|.....++...-. +.... . +++ ..+.-.| +|+ |+++ +
T Consensus 448 iAS~e-~~~iWhy~~pK~~s~l~--------------~~k~r--k------egr-~h~Ddtp------~ga~d~~l---~ 494 (1189)
T KOG2041|consen 448 IASEE-RYFIWHYVLPKFNSVLA--------------GVKIR--K------EGR-FHGDDTP------EGAQDRTL---E 494 (1189)
T ss_pred Eeccc-cEEEEEEeccchhhhhh--------------hhhhc--c------ccc-ccCCCCc------cchhhcee---e
Confidence 55554 67788765433311000 00000 0 000 0111112 222 3332 1
Q ss_pred CCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 868 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
.. ..++.|..++|.+++.+. ++|.++-..|.|+-|.+.+.-+..... -...|+.++.+-+...+|.-..-|.
T Consensus 495 ys----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv 566 (1189)
T KOG2041|consen 495 YS----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGV 566 (1189)
T ss_pred cc----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhce
Confidence 11 355677889999999975 688899999999999998877666554 3456889999888888888888888
Q ss_pred EEEEeCCC---cccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec
Q 001157 948 LCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1135)
Q Consensus 948 i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~ 1002 (1135)
+.+.|+.- +..+.. +..... ..|+.+.|..|+..+++- ....+.|++-
T Consensus 567 ~tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 567 VTFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 88888872 222111 111111 568899999988877774 4445777765
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=3.6e-13 Score=141.56 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=105.5
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
.+.|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 55788899999999999999 99999999999988888887778999999999 99999999999999999999999999
Q ss_pred eecCccCceEEEEEcC-------------------------------C----C-------------CeEEEEcCCCcEEE
Q 001157 919 KLKGHQNRITGLAFSP-------------------------------T----L-------------NALVSSGADAQLCM 950 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~-------------------------------d----~-------------~~l~s~~~D~~i~i 950 (1135)
+-.||.+.|..|+|.| + + -.+.+++.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 14778899999999
Q ss_pred EeCCCcc
Q 001157 951 WSIDKWE 957 (1135)
Q Consensus 951 Wd~~~~~ 957 (1135)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998644
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.2e-12 Score=147.20 Aligned_cols=238 Identities=9% Similarity=0.033 Sum_probs=156.5
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|..|....+......+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 3456666544444444557778999999999996655432 23579999998875432 1
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CCc--
Q 001157 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKM-- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~-- 478 (1135)
....+.+..++|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++.
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1223345578999999998875 3344 5889999887543 2334455678999999999 5655544 344
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.++|+.++.. ..+..+........|+|++ ++++..+.+ ..|.+||+.++.... +.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCE
Confidence 45557666654 3444444455677888765 677666543 358889988765433 332 223346789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
|+..+.++ +...+.++++ +|...+.+.++.. .+...+|+|
T Consensus 388 i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887643 2456888887 4666677776554 677788887
No 233
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.52 E-value=1.1e-08 Score=125.43 Aligned_cols=573 Identities=11% Similarity=0.118 Sum_probs=306.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEE----EcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLW----EVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
..+.|.++.|-++... ++.+..+|.|.+. +..+...- +...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence 3468999999999974 5667789999998 44433221 123456789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC-----CCeeEEEEecCCCceEEEEEcCCCcE-E-EEEcCCC-eeEEE
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMI-K-VWDVVAG-RKQYT 492 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i-~-iwd~~~~-~~~~~ 492 (1135)
..||....++++.+.+-. -..+. +..-+. ..--++-|-....+ .=|+.-+.. + +=|.... .....
T Consensus 133 Ella~vT~~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred CEEEEEeCCCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCc
Confidence 999999999998887522 22111 111111 11223333222221 111111100 0 0010000 00112
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEc---C---CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+. +...-..|+| .+||.++++.+. . ..+|+|+-+ +.....-..-.+--.+++|-|.|+++++... ..+.
T Consensus 206 ~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~ 280 (928)
T PF04762_consen 206 LS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDR 280 (928)
T ss_pred cc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCC
Confidence 22 3444556666 677799998875 2 579999855 3332222222334457899999999998764 2334
Q ss_pred ceEEEEeCCCCceeEEeecc---cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee--eEEEeCCCCCCCcCeEEEe
Q 001157 567 SHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s 641 (1135)
..|.+|. ++|-.-..|.-. ....|..+.|++|+..|+..-.|. |++|...+..- .+.+..... ..+..+.|+
T Consensus 281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wd 357 (928)
T PF04762_consen 281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWD 357 (928)
T ss_pred cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEEC
Confidence 5576776 445444444432 334789999999999999976555 99999988763 333333322 234569999
Q ss_pred c-CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCc
Q 001157 642 K-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1135)
Q Consensus 642 ~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1135)
| +...|...+.+|.+..++..-. ...+...
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~-------------------------------------------- 388 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS-------------------------------------------- 388 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEE-----EEecCCC--------------------------------------------
Confidence 9 4556777777788877665321 0000000
Q ss_pred ccCccccCCCcccccCccccccccccccccccCcccCC--CceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEE
Q 001157 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP--SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1135)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 798 (1135)
...|...+......++.+-.+.....+ -....+.+ ...|..++|++++..+++...||.+.+
T Consensus 389 -----------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~ 452 (928)
T PF04762_consen 389 -----------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSI 452 (928)
T ss_pred -----------CccCceEEEEEeCCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEE
Confidence 000111122222234444444332222 22233332 357999999999988999999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-C---CeEEEEeCCCce--
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK-- 872 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~-- 872 (1135)
|.+................+ ............ . ...+..++|..+..+++... + ..+.++++...+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 524 (928)
T PF04762_consen 453 YEWDLKNMWSVKPPKLLSSI-----SLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS 524 (928)
T ss_pred EEecCCCcccccCcchhhhc-----cccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence 98765432211110000000 000000000000 1 45678899988888777765 3 468888875332
Q ss_pred -EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE-eEeecCccCceEEEEEcCCCC---eEEEEcCCCc
Q 001157 873 -VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQ 947 (1135)
Q Consensus 873 -~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~ 947 (1135)
.......-.+.+..+...+ ....++.-..+|.+...+...... +..|..-...+. +....+.. .++.-+..|.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~-~~~~~~~~~~~~~~GLs~~~~ 602 (928)
T PF04762_consen 525 ASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWME-VCQINGSEDKRVLFGLSSNGR 602 (928)
T ss_pred eeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEE-EEEECCccceeEEEEECCCCE
Confidence 2333333345565666665 444466677899998776554322 223332222222 22222222 3444444554
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc--CCcccccCCCC--CCCCCeEE
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK--LECSRSWSPKD--ALPAPISS 1022 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~--~~~~~~~~~~~--~h~~~i~~ 1022 (1135)
+++ ++.. +. ..+++.+++ +.+|+. .....++..++. ...+....... .+...++.
T Consensus 603 Ly~----n~~~-----la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~ 662 (928)
T PF04762_consen 603 LYA----NSRL-----LA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR 662 (928)
T ss_pred EEE----CCEE-----Ee---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc
Confidence 443 1111 11 234555553 445544 667778888875 11111111000 01222333
Q ss_pred EEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 1023 AIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1023 ~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
+ ..|..|+++-....=.|..+.-|.+
T Consensus 663 V---ERGsriVt~vp~~~~vVLQmPRGNL 688 (928)
T PF04762_consen 663 V---ERGSRIVTAVPSDTSVVLQMPRGNL 688 (928)
T ss_pred C---ccCCEEEEEeCCCceEEEEcCCCch
Confidence 3 4688888776544555667766653
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=4.2e-14 Score=145.88 Aligned_cols=231 Identities=15% Similarity=0.179 Sum_probs=192.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
-.-..+.++.+|+.|+.|+..|.+..+|+.+++... ++. -...|.++.|-.+.+ ++|.+ ....++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 346788999999999999999999999999987554 333 345799999998887 55544 578999999 8899
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|. ..|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh----snGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH----SNGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC----CCce
Confidence 99999855 568899998876 6788889999999999999999998888888999999999887777775 4889
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
|.+|.....+++..+-+|.. +|.++++.++|.|+++.|.|..++|||+++...+.++... .....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-cee
Confidence 99999999999999999988 9999999999999999999999999999998877666542 256778888766 344
Q ss_pred EEeCCCcEEEEE
Q 001157 649 VTTSDNGIKILA 660 (1135)
Q Consensus 649 ~~~~dg~v~iw~ 660 (1135)
.+ ....|.||.
T Consensus 350 ~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LS-YGDHVQIWK 360 (545)
T ss_pred ee-cCCeeeeeh
Confidence 44 344888995
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.6e-11 Score=128.14 Aligned_cols=251 Identities=13% Similarity=0.194 Sum_probs=169.8
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCC--C
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD--N 894 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~--~ 894 (1135)
.+.+|+.+++......... ...-++..|+.|..+.|--..+.+.+|++.+.+.+..- -|...|+.+++|| + .
T Consensus 106 n~~v~~vet~~~~s~~q~k----~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSp-gp~~ 179 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKK----MQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSP-GPEP 179 (566)
T ss_pred ceeeeeeccceehhheehh----hhcCcccccccchhhhhhhhcceEEEEecCCccceeee-eeccceeeEEecC-CCCC
Confidence 3456677774433322222 11226899999998877767899999999875433222 2678899999999 5 3
Q ss_pred cEEEE-----EeCCccEEEEEcccceEeEee---cCccCceEEEEEcCCCCe---EEEEcCC---------CcEEEEeCC
Q 001157 895 NIIAI-----GMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNA---LVSSGAD---------AQLCMWSID 954 (1135)
Q Consensus 895 ~~las-----g~~dg~v~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~---l~s~~~D---------~~i~iWd~~ 954 (1135)
..+|+ ++.-+.|+||.+........+ .-....-..+.|.+-|.- |++..-| .++++.+++
T Consensus 180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 34443 355678999987733221111 111122235778877752 3333333 468888887
Q ss_pred CcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE---CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCE
Q 001157 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH---ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL 1031 (1135)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~ 1031 (1135)
..+. .+... . . ++|.++.|+|+|+-++++. -..+.+||++++.+..+. .++-.++-|+|.|.+
T Consensus 260 g~s~----~V~L~-k-~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 260 GESV----SVPLL-K-E---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EGPRNTAFFNPHGNI 325 (566)
T ss_pred CceE----EEecC-C-C---CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CCCccceEECCCCCE
Confidence 3221 12221 1 1 6899999999999888843 578999999888877664 567889999999999
Q ss_pred EEEEe---cCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEec------CCcEEEEecC
Q 001157 1032 VYAGF---CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS------DGAVHVVEPS 1101 (1135)
Q Consensus 1032 l~s~~---~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~------Dg~i~lW~~~ 1101 (1135)
|+.++ .-|.|.|||+.+.+++..+.. ...+-+.|+| ||.++++++. |+.+++|++.
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a-------------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKA-------------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhcccccc-------------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEec
Confidence 88765 458899999999888877641 3445789999 7788887764 6889999995
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.5e-12 Score=145.55 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=149.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--c
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~ 478 (1135)
+..+...+.+.+|+|||+.|+.++. +..|.+||+.+++.. .+..+.+...+++|+|||+. ++++.+.++ .
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~ 273 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----LVASFRGINGAPSFSPDGRR-LALTLSRDGNPE 273 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----EeccCCCCccCceECCCCCE-EEEEEeCCCCce
Confidence 4457778999999999999998874 346999999887642 22334445568899999995 334555555 6
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCe--EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|++||+.+++. ..+..+.......+|+|++ +.|+.++. +|. |.++|+.+++.. .+..........+|+|||++
T Consensus 274 Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 274 IYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCE
Confidence 99999988874 4565565556778898765 77776653 454 666666655433 33333344557899999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---CCeEEEEECCCCeeeEEEeCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
++....+ ++...|.+||+.+++.. .+... . ......|+|||++++..+. .+.|+++++..+ ....+..+.
T Consensus 350 Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~-- 422 (433)
T PRK04922 350 IAMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSAD-- 422 (433)
T ss_pred EEEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCC--
Confidence 9876532 23457999999887765 33321 1 2345789999999887664 346888888543 444444332
Q ss_pred CCcCeEEEec
Q 001157 633 PASPRLRFNK 642 (1135)
Q Consensus 633 ~~v~~~~~s~ 642 (1135)
..+...+|+|
T Consensus 423 g~~~~p~wsp 432 (433)
T PRK04922 423 GEVREPAWSP 432 (433)
T ss_pred CCCCCCccCC
Confidence 2456667765
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3e-12 Score=146.35 Aligned_cols=239 Identities=14% Similarity=0.136 Sum_probs=153.0
Q ss_pred CCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
...+|..|.........+.+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3456666654444445556788899999999998655544333 369999998886432
Q ss_pred ccccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEc--CCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE-EcCCCcE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~-~~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s-~~~d~~i 479 (1135)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .. .+..+........|+|||+ .|+. +..++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCC--EEEEEecCCCCc
Confidence 2223445678999999998875 566777666655 4433 23 3444555567789999999 4544 3345666
Q ss_pred EEEEc--CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 480 ~iwd~--~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
.||.+ .++.. ..+..+.......+|+|++ ++++..+.++ .|.+||+.+++.... .. ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAA-QRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCce-EEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCC
Confidence 66654 44443 2222222334456787755 7887776554 699999987765432 22 23346789999999
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
.|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 384 ~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 384 YILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 999877533 3456777777 4665555554333 566677776
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=144.61 Aligned_cols=238 Identities=11% Similarity=0.176 Sum_probs=163.7
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 422 (1135)
|.+-|+|++|+.||. +|++||.|-.+.|||.-..+.++. +-+||...|.|+.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999987666553 3578999999999999 5678
Q ss_pred EEEEeCCCeEEEEEcCCCC-------ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee------
Q 001157 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------ 489 (1135)
+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+.++++||+|+-+|++....
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12223345678999999999999965 789999999999999986321
Q ss_pred -E---EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-----ecCCCCeEEEEE-EcCCCCEEEEE
Q 001157 490 -Q---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMA-YSADGTRLFSC 559 (1135)
Q Consensus 490 -~---~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~l~~~ 559 (1135)
. ..+...--...++.++|... .+|+.|+.|--.++||.+....... .........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 1 11111223456788888765 7999999999999999642211110 000011111121 122111 0
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
..+ +.... .-..++.+.|+|+|..|+..-..-.|+++|+..++.....
T Consensus 264 ----n~~----------gn~~~-----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 ----NSQ----------GNLDR-----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ----Ccc----------ccccc-----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 001 10000 0013566889999977766545568999999987765544
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=9.6e-12 Score=143.09 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=152.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 4567889999999999999998764 468999999887542 34456667889999999995 3445665654
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.+||+.++.. ..+..+........|+|++ +.++..+. +| .|.+||+..+... .+......+....|+|||++
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCE
Confidence 77789887765 4566666667778898865 67776653 33 5778887655443 33334455677899999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC------CeEEEEECCCCeeeEEEeCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~ 629 (1135)
|+....+ .+...|.+||+..+.. +.+... . .+....|+|||+.|+..+.+ ..++++++..+.. ..+...
T Consensus 348 ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~ 422 (435)
T PRK05137 348 IAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP 422 (435)
T ss_pred EEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC
Confidence 9877642 2345789999865543 333322 1 45678899999998875532 3688888876554 344322
Q ss_pred CCCCCcCeEEEec
Q 001157 630 GGLPASPRLRFNK 642 (1135)
Q Consensus 630 ~~~~~v~~~~~s~ 642 (1135)
..+...+|+|
T Consensus 423 ---~~~~~p~Wsp 432 (435)
T PRK05137 423 ---GDASDPAWSP 432 (435)
T ss_pred ---CCccCcccCC
Confidence 1356667766
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.4e-12 Score=146.51 Aligned_cols=237 Identities=12% Similarity=0.111 Sum_probs=154.6
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC--CCcEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++.+|....+......+...+.+.+|||||+.++.+... +..|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 4556665444455555577889999999999965544322 2469999998876432 22
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCc--E
Q 001157 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~--i 479 (1135)
.+.+...+++|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 334445688999999988654 4555 6999999887532 3444555567889999999 555444 4444 6
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
+++|+.+++.. .+..+.......+|+|++ ++++..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 77777676543 332233344567888765 6776655433 6999999876654 333 22244567999999998
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
+..+.. .+...|++++.. +.....+..+.. .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877643 345679999885 444555554332 456666765
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=4.4e-13 Score=140.92 Aligned_cols=156 Identities=21% Similarity=0.311 Sum_probs=116.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccc------ccceeecccccccc---cccccccccCCCeeEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH------KPFKVWDISAASMP---LQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~v~~ 416 (1135)
...|+|+.|-|.++.++.++-.+|.+.+||..---.... +.-..+.+...... .+.....--.+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998887888888899999998632110000 00000111100000 111112223458999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h 496 (1135)
||||++||+.+.||.+||+|..+.+.+. .++.--+...|++|||||+ +|++|++|-.|.||.+..++.+..=++|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecccc
Confidence 9999999999999999999999876554 3334456899999999999 9999999999999999999999999999
Q ss_pred CCCeEEEEec
Q 001157 497 EAPVYSVCPH 506 (1135)
Q Consensus 497 ~~~v~~l~~~ 506 (1135)
..+|..++|.
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 9999999998
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1e-11 Score=142.85 Aligned_cols=215 Identities=12% Similarity=0.076 Sum_probs=146.7
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC---CccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
..|.++|... ...+.+..+...+.+.+|+| ||+.|+..+. +..|++||+.+++. ..+..+.+.+.+.+|||||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC
Confidence 3689999854 44455667888999999999 8888887764 46899999998875 34555666778899999998
Q ss_pred eEE-EEcCCCc--EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--C--cEEEEeccCCccccc
Q 001157 938 ALV-SSGADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECSRSW 1010 (1135)
Q Consensus 938 ~l~-s~~~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~--~i~vwd~~~~~~~~~ 1010 (1135)
.|+ +.+.++. |++||+.+++.. .+. .+. .......|+|||+.|+...+ + .|.+||+.+.....+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt---~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT---RLT---DSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE---Ecc---CCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe
Confidence 775 5555554 777888876532 111 111 23567899999999988543 2 578888865554444
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCD---GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~d---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
... ...+....|||||++|+..+.+ ..|.+||+.++.. ..+. .+ ..+....|+| |+++|+
T Consensus 330 t~~---~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt----------~~--~~~~~p~~sp-DG~~i~ 392 (435)
T PRK05137 330 SFG---GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT----------SG--FLVEGPTWAP-NGRVIM 392 (435)
T ss_pred ecC---CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc----------CC--CCCCCCeECC-CCCEEE
Confidence 322 3456678999999999877643 3688899865543 2222 11 1245678999 777776
Q ss_pred EEecC------CcEEEEecCCCc
Q 001157 1088 LGMSD------GAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 s~~~D------g~i~lW~~~~~~ 1104 (1135)
..+.+ ..+.+.++..++
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCc
Confidence 65443 257777775544
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=3.1e-12 Score=127.41 Aligned_cols=345 Identities=13% Similarity=0.238 Sum_probs=219.0
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC-CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
..++.++|+.+ .++....-|..+-+++.+.|.++++|-- ++++.-..+... ...+++++.+.++...|++|-..|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceE
Confidence 34566777776 7777778888889999999999999964 445544444332 23468899999999999999999998
Q ss_pred EEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccC
Q 001157 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.-+.+..........+
T Consensus 93 tefs~sedfnkm~~~r---------------------------------------------------------------- 108 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLK---------------------------------------------------------------- 108 (404)
T ss_pred EEEEhhhhhhhcchhh----------------------------------------------------------------
Confidence 8776643311111100
Q ss_pred ccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccc
Q 001157 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
.| ..|...+..+.|+-....+++.+.|..+. |....
T Consensus 109 ------------~~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------- 144 (404)
T KOG1409|consen 109 ------------DY------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------- 144 (404)
T ss_pred ------------hh------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec-------------
Confidence 00 12667788888888888888888886554 33221
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEe--CCCceEEEEeeCCCCCeeEEEEeCCC
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN--MMTFKVMTMFMSPPPAATFLAFHPQD 893 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd--~~~~~~~~~~~~~~~~v~~l~~sp~~ 893 (1135)
++..+.... - ....+++.+.-. +...|. .|.|.+-. .....++.++.+|.+.+++++|.+ .
T Consensus 145 --------~~~~lg~Y~----~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 145 --------SGNRLGGYN----F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-G 208 (404)
T ss_pred --------cCCcccceE----e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-C
Confidence 111111000 0 111111222111 444454 45544433 345678899999999999999999 8
Q ss_pred CcEEEEEeCCccEEEEEcccceE-eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC----
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---- 968 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~---- 968 (1135)
.++|.+|..|..|.+||+..++- ...+.+|.+.|..+...+--+.+.+++.||.|.+|+++.........+....
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c 288 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC 288 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh
Confidence 99999999999999999986653 4568899999999998888899999999999999999865432222111100
Q ss_pred --------------------CCC--CCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccc-----cCCCCCCCCCeE
Q 001157 969 --------------------GRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRS-----WSPKDALPAPIS 1021 (1135)
Q Consensus 969 --------------------~~~--~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~-----~~~~~~h~~~i~ 1021 (1135)
.|. .+...+...+-+.-..+...+.+-.+++.|.-...+.. +...+.-...|+
T Consensus 289 ~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIt 368 (404)
T KOG1409|consen 289 NQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGIT 368 (404)
T ss_pred CchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccccccee
Confidence 000 00011222222222222222444445555541111111 111111145799
Q ss_pred EEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1022 SAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1022 ~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
+|.+..+-.+|+|++.|+.|+|||+..
T Consensus 369 amhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 369 AMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEhhhhccceeecCCceEEEEEechh
Confidence 999998888999999999999999975
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=5e-11 Score=125.27 Aligned_cols=360 Identities=12% Similarity=0.141 Sum_probs=228.2
Q ss_pred EEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE
Q 001157 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1135)
.+|+..+......+....-++..+++||.|.+|++.. ...|.+|....+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 4465554444445555566888999999999999865 334999998877755555432 68889999999999
Q ss_pred EEEecCC---------------eEEEEECCCCeeeEEEeCCCCCCCcC-eEEEecCCCEEEEEeCCCcEEEEECCCcchh
Q 001157 604 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 604 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~ 667 (1135)
.+-+..+ .+.+||..++..+..+.......... -+.|+-+..++|-. ....+.|+++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 9976443 49999999999999887654422233 67888888877655 3347888886 33110
Q ss_pred eeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccc
Q 001157 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1135)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1135)
.+... .+
T Consensus 165 -----~~p~~--------------~l------------------------------------------------------ 171 (561)
T COG5354 165 -----EHPFK--------------NL------------------------------------------------------ 171 (561)
T ss_pred -----cCchh--------------hc------------------------------------------------------
Confidence 00000 00
Q ss_pred cccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcc--eeee-----ecccceeEEEeecccCCCCCCccccccccee
Q 001157 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
....|....++|.|. .|+. .+..+.+++|.+..+.. +...
T Consensus 172 -----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~------l~tk---- 218 (561)
T COG5354 172 -----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV------LVTK---- 218 (561)
T ss_pred -----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe------eeee----
Confidence 012234444444321 1111 12245566665532111 1100
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe------------CCeEEEEeCCCceEEEEeeCCCCCeeEEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 888 (1135)
..+ .-.-..+.|.+.|++|++-- ...+.|+++....+... ..-.++|..++
T Consensus 219 ----------~lf------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~ 281 (561)
T COG5354 219 ----------NLF------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFT 281 (561)
T ss_pred ----------eeE------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeee
Confidence 000 11123466677777665421 24588898874443333 24578999999
Q ss_pred EeCCCCcEEEE--EeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC---CcEEEEeCCCccccccee
Q 001157 889 FHPQDNNIIAI--GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 889 ~sp~~~~~las--g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~~~~~~~~~~~ 963 (1135)
|.| .++.+++ |-.+..+-++|+... +...+ ....-..+.|||.+++++.++-| |.+-+||....-. +
T Consensus 282 W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~ 353 (561)
T COG5354 282 WEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----V 353 (561)
T ss_pred ecc-cCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE----E
Confidence 999 5554443 357788999998866 33333 33344567899999999998876 6799999987443 3
Q ss_pred eecCCCCCCCCCCceeEEECCCCcEEEEE-------ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001157 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1135)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~-------~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~ 1036 (1135)
.....+ ...+-+.|+|||+++.+. .|..|.|||+.+..+. ..+.+.|.|.|++.-+.+
T Consensus 354 ~~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 354 AGAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred EEEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeec
Confidence 323333 234677899999999883 2678999999666543 355678888898887777
Q ss_pred cCC
Q 001157 1037 CDG 1039 (1135)
Q Consensus 1037 ~dg 1039 (1135)
.+.
T Consensus 419 s~~ 421 (561)
T COG5354 419 SCP 421 (561)
T ss_pred cCC
Confidence 665
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.5e-12 Score=143.59 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=146.0
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 4577789999999999999987643 469999999876432 2233445678999999994 3346677887666
Q ss_pred EEc--CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCC--CCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 482 WDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 482 wd~--~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
|.+ ..+. ...+..+........|+|++ +.|+..+. +|...+|.++ ++. ...+..........+|+|||+++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEE
Confidence 654 4443 55666666666778898865 66665554 5666777654 333 22222233344567899999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC---eEEEEECCCCeeeEEEeCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..+.. .+...|++||+.+++....... . ......|+|||+.|+.++.++ .+++.++ ++.....+..+.+
T Consensus 343 a~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-- 415 (427)
T PRK02889 343 AYISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-- 415 (427)
T ss_pred EEEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--
Confidence 876542 2345799999988875433222 1 235678999999998876443 3555566 3555555543322
Q ss_pred CcCeEEEec
Q 001157 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~s~ 642 (1135)
.+...+|+|
T Consensus 416 ~~~~p~wsp 424 (427)
T PRK02889 416 DVREPSWGP 424 (427)
T ss_pred CCCCCccCC
Confidence 456677776
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=5.1e-12 Score=128.36 Aligned_cols=272 Identities=11% Similarity=0.135 Sum_probs=191.8
Q ss_pred CCCeeEEEeecCCCeEEEEE-eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVG-TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g-s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
...|..++|--|++.=+..+ +.|..+............. .|++.. ......+|..++.. .-.|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 34677888877665333333 3566666666665554432 122211 22344556665553 33677
Q ss_pred EEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEEcCCCeeEEEecC------
Q 001157 425 VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 495 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~l~~------ 495 (1135)
+|-.+|.+.+|..+.+..- .....+..+ ..+..|.-++.... ++++|+.. ..+.|||++..+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7789999999999854311 111123222 45777777776664 67779988 8999999998866654322
Q ss_pred -C--CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 496 -H--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 -h--~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
- .-.++++.|.+..+...|++++.-+.+++||.+.++. +..+......++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 2335567787764458999999999999999987654 5578888899999999999999999854 677999
Q ss_pred EeCCCCceeEE-eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
+|++.++.... +.+..+ .++++..+|.+++++++|-|..+||+|+.+.+++....... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666555 89999999999999999999999999999977776654432 245555443
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=7.3e-11 Score=125.80 Aligned_cols=334 Identities=14% Similarity=0.157 Sum_probs=201.8
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-----ecC-----C
Q 001157 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GDE-----F 610 (1135)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~d-----g 610 (1135)
.......+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.|++|.+- ..+ -
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33467889999999999875 556999998888644443332 57889999999998763 122 3
Q ss_pred eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+|++.++.....+...... -++..|+.|..+.+- -..+.+.+|++.+-......+.....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i-------------- 168 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGI-------------- 168 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccceeeeeeccce--------------
Confidence 4779999996666665543222 268889988765443 23568999998764333333321110
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCC--CceeEEEcCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP--SQIKALRLPD 768 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~ 768 (1135)
..+.++|..+..- .+.+.|. .-+.-..+++|........ ...+.+.
T Consensus 169 -------------~~f~lSpgp~~~~------------vAvyvPe----~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 169 -------------TMLSLSPGPEPPF------------VAVYVPE----KKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred -------------eeEEecCCCCCce------------EEEEccC----CCCCCcEEEEeccccccccchhhhcccc---
Confidence 1112222210000 0000000 0011255667766522111 1111111
Q ss_pred CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
...-..+.|++-|.-|++.... |++. .+...-+..++.+.+.+ |......+.. .++|.++.|
T Consensus 217 ---kadkvqm~WN~~gt~LLvLast------dVDk----tn~SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhdv~W 278 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLAST------DVDK----TNASYYGEQTLYLLATQ-GESVSVPLLK----EGPVHDVTW 278 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEE------eecC----CCccccccceEEEEEec-CceEEEecCC----CCCceEEEE
Confidence 1112345666666544332221 0110 00111111122333333 3333444554 889999999
Q ss_pred ecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---ccEEEEEcccceEeEeecC
Q 001157 849 SKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 849 s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~~~~~l~~ 922 (1135)
+|+|+-++++. --++.|||+. ++++..+ ..++-.++-|+| .|++|+.++-+ |.|.|||+.+.+++..+..
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a 354 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA 354 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence 99999887775 4789999985 5666555 467788999999 78888877654 8999999999999999886
Q ss_pred ccCceEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001157 923 HQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1135)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1135)
-.. +-..|+|||.+++|+.. |+.++||++..
T Consensus 355 ~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 355 ANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 544 45789999999998863 67799999975
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.5e-11 Score=128.90 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=139.5
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-C-CCeEEEEeccCCCccEEEEEEcCCeEEEEeC
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h-~-~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~ 528 (1135)
.|...-+.|..+|||+. +++||...-.|++||+..-.+. |..| . ..|.-..++- |-..++.-..|.+|-+...
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEecc--chhhheEeecCceeeehhh
Confidence 46677889999999996 6889999999999998865543 3333 2 2333333322 2234555556666665422
Q ss_pred CCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec
Q 001157 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1135)
- +....+..+ ..-..++++.-.--|+.++. ...|+-++++.|+.+..|..... .++++..++....|++|+.
T Consensus 124 ~--G~hy~~RIP-~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 124 Y--GRHYRTRIP-KFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred c--CeeeeeecC-cCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 1 111111111 12234555443333333332 33499999999999999988665 8999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeCCCC---------CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 609 EFQIKFWDMDNMNMLTTVDADGG---------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|.|.+||.++...+.++....+ ...|+++.|+.+|-.+++|+.+|.+.|||+.+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 99999999998887777653322 235889999999999999999999999998766
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=4.3e-10 Score=114.46 Aligned_cols=254 Identities=13% Similarity=0.181 Sum_probs=172.8
Q ss_pred CCCeeEEEeecCCCEEEEEe----CCeEEEEeCCC--ceEEE--EeeCCCCCeeEEEEeCCCCcEEEEEeCC-ccEEEEE
Q 001157 840 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED-SSVQIYN 910 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~--~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~d-g~v~iwd 910 (1135)
...++-++++|++++|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++... |.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 66788899999999998885 36687777764 54422 2222233448899999 88888888754 7899999
Q ss_pred ccc-ceEeE--eecCccCc----------eEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 911 VRV-DEVKT--KLKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 911 ~~~-~~~~~--~l~~h~~~----------i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+.. |.+.. .+..|.+. +....|.|++++|++++ .|. |.+|+++.|............ ..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~-----G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKP-----GA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCC-----CC
Confidence 865 43222 12235444 77889999999999875 555 999999977654433333322 26
Q ss_pred CceeEEECCCCcEEEEE--ECCcEEEEeccC--CcccccCC------CCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 001157 976 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSP------KDALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1044 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~--~d~~i~vwd~~~--~~~~~~~~------~~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vw 1044 (1135)
+.+.++|+|++++..+. -+++|.+|..+. ..+..+.. ...-.....+|.+++||++|+++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 78999999999998884 379999999933 33222211 1111456778999999999998742 3478888
Q ss_pred ecCCC-ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEecCCCccccCC
Q 001157 1045 DAETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1045 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~~~~~~~~~~ 1109 (1135)
.+... ..+..+. ....+...+..+.+.| ++++|++++.| ..|.++.+......+..
T Consensus 272 ~V~~~~g~L~~~~--------~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 272 SVDPDGGKLELVG--------ITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEcCCCCEEEEEE--------EeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 88643 2222221 1124445577888899 77888887766 48999998766654443
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=6.7e-11 Score=117.90 Aligned_cols=190 Identities=15% Similarity=0.272 Sum_probs=123.0
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-----eEEEecCCC------------CCeEEEEeccCCCccEEE
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~l~~h~------------~~v~~l~~~~~~~~~~l~ 515 (1135)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|+.+.|.+.++...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 44689999999999 89999999999999743222 222344443 457888999988888999
Q ss_pred EEEcCCeEEEEeCCCCCceE-----EecCCCCeEEEEEE---cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc
Q 001157 516 STAIDGKIKAWLYDYLGSRV-----DYDAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
..+.|++|++|.+....... ........++++.. .+....+. ..+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccccc
Confidence 99999999999886544332 01111112222211 11100000 12334444333
Q ss_pred CCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCC-----CCCcCeEEEec-CCCEEEEEeCCCcEEEEE
Q 001157 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGG-----LPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~ 660 (1135)
.--|++++++.|+..++++ +|=.|.+|++.-- +....+..... ...|++..|+| .-++++-.+..|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 3368999999999998887 5778999998642 22222222111 12377889999 456778888899999999
Q ss_pred CCCc
Q 001157 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+...
T Consensus 243 mR~~ 246 (433)
T KOG1354|consen 243 MRQS 246 (433)
T ss_pred chhh
Confidence 8644
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8e-11 Score=124.62 Aligned_cols=318 Identities=11% Similarity=0.174 Sum_probs=204.6
Q ss_pred cceeeecCCCCCCcee------ecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC-----------CCcEEEEEcC
Q 001157 315 SDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVG 377 (1135)
Q Consensus 315 ~~~~~~~~~~~~~~~~------~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~-----------dg~v~iwd~~ 377 (1135)
..-|.|||-|.++.++ .|.+.....++.+.|. .|.-+.|||+.+ +|+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcc
Confidence 4458899999886654 4455555666666676 699999999998 5666432 1479999999
Q ss_pred CccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCee
Q 001157 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 457 (1135)
+|...+...+ +.+....-.-+.||.|++++|--..+ +|.||+..+-..+.. ..+ .-..|.
T Consensus 291 tG~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIR 350 (698)
T ss_pred ccchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCcccc
Confidence 9987764211 11111122346899999999987664 589998776332211 111 234688
Q ss_pred EEEEecCCCceEEEEEcC-----CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE----------cCCe
Q 001157 458 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGK 522 (1135)
Q Consensus 458 ~l~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s----------~dg~ 522 (1135)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|+ |..+.++...+|.+|+.-- .-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 899999987 6664332 2356677777777776654443 4444444455566665431 1123
Q ss_pred EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC----CceeEEeecccCCceeEEEEeC
Q 001157 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
+.|+.++..........-...|...+|-|.|+.+++.+.. +...++.+|.+++ .+++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 4555555444333333345578899999999998866532 3466788888763 233444443 2567899999
Q ss_pred CCCEEEEE---ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC------CCcEEEEECCCc
Q 001157 599 TRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1135)
Q Consensus 599 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~ 664 (1135)
.|++++.+ |..|.+.++|..-.....+- ...| ...+.+.|.|.|+++++++. |...++|+....
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99998885 46789999998853322221 1122 24578999999999999876 556677777543
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.7e-11 Score=122.19 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=124.4
Q ss_pred ceeee-eccc--ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC--CCEEEEEe
Q 001157 785 LSLLA-LASN--AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN--DSYVMSAS 859 (1135)
Q Consensus 785 ~~l~~-~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d--g~~la~~s 859 (1135)
..+++ |+.. ..+++||+.... ++|....-..-...+.. .-.++++.|-+. ...+|++.
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~-------------qiw~aKNvpnD~L~LrV----PvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSK-------------QIWSAKNVPNDRLGLRV----PVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred CceEecCchhcccceeeeecccce-------------eeeeccCCCCcccccee----eeeeccceecCCCCCceEEEEe
Confidence 33444 5555 677888876432 34443322221111222 455677888887 78899998
Q ss_pred -CCeEEEEeCCCc-eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecCccCceEEEEEcCCC
Q 001157 860 -GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 860 -dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~ 936 (1135)
-+.+++||...+ +++..+.--..+++++...| ++++|.+|..-|.+..+|+.+++.+.. +.+-.+.|++|..+|.+
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH 302 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC
Confidence 799999999864 56777877788999999999 999999999999999999999998887 89999999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCcccccc
Q 001157 937 NALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
++|++||-|..|||+|+++.+.+..
T Consensus 303 ~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 303 PVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ceEEeeccceeEEEeecccchhhhh
Confidence 9999999999999999999664443
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.1e-10 Score=132.61 Aligned_cols=244 Identities=10% Similarity=0.049 Sum_probs=152.6
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCe--EEEEEeCCC--cEEEEEcCCccccccccceeecccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~--lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
-.+|..|...++..+.......+.+.+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 4566666555555544445667788999999975 333554444 57777887775432
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC--ceeeeeEeecCCCCeeEEEEecCCCceEEEEE-c
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-G 474 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~ 474 (1135)
+....+.....+|||||+.||..+. +..+.+|++.++. .... ...++.......+|+|||+. |+.. .
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~ 300 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSN 300 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEEC
Confidence 2223445567899999999988653 2234557776532 2221 22223334567899999994 4444 4
Q ss_pred CCCcEEEE--EcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 475 DDKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 475 ~d~~i~iw--d~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++.... ......+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~ 377 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPS 377 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceE
Confidence 56655555 4432 33345555555667788898865 677665543 4689999987765443 32334567889
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
|+|||+.|+..... .+...|+++|+..++........ . .+...+|+|-.
T Consensus 378 wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCC-C-cccCceecCCC
Confidence 99999998865532 34678999999887765444322 2 45567787743
No 254
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=3.8e-10 Score=118.82 Aligned_cols=313 Identities=9% Similarity=0.064 Sum_probs=205.0
Q ss_pred CcceeeecCCCCCCcee------ecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCC---------------cEE
Q 001157 314 QSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 372 (1135)
Q Consensus 314 ~~~~~~~~~~~~~~~~~------~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg---------------~v~ 372 (1135)
++..+.+||.|.+++.. .++......+..+.|. .|..+.|||.++ +|.+-+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 45567788888776544 3333334445555554 699999999998 677765443 488
Q ss_pred EEEcCCccccccccceeecccccccccccccccccCCC--ee-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeeeE
Q 001157 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLE 448 (1135)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~ 448 (1135)
+||..+|..+.... +...+ .. -+.|+-|.+++|=- ....++|+++ ++.. ......
T Consensus 112 vwd~~sg~iv~sf~-------------------~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 112 VWDIASGMIVFSFN-------------------GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred EEeccCceeEeecc-------------------ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence 99999888776421 22222 33 57899999888766 4456999997 3332 221112
Q ss_pred eecCCCCeeEEEEecCCCceEEEE-----EcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE--E---
Q 001157 449 IDAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST--A--- 518 (1135)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~--s--- 518 (1135)
+. ...|....|+|.+..-.|+. .+.++.+++|.+..++.+.+-.-....-..+.|++.+ .+++.- .
T Consensus 171 lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~k 246 (561)
T COG5354 171 LR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTK 246 (561)
T ss_pred cc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeee
Confidence 21 35688899999865434443 4678899999998777665432222233445666554 333321 1
Q ss_pred ------cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCcee
Q 001157 519 ------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1135)
Q Consensus 519 ------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1135)
....+.++++......... ...++|...+|.|.++.++++++ -....+.++|++.. ....+... .=+
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rN 319 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRN 319 (561)
T ss_pred cccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---ccc
Confidence 1245777877743333333 55779999999999999887753 35677889998855 43333332 234
Q ss_pred EEEEeCCCCEEEEEecC---CeEEEEECCCCeeeE-EEeCCCCCCCcCeEEEecCCCEEEEEeC------CCcEEEEECC
Q 001157 593 VVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANS 662 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~ 662 (1135)
.+.|+|.+++++.++-| |.|-+||......+. .+.+. ...-+.|+||++++.+... |..+.||++.
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 57799999999997744 789999988765444 55543 2356789999998887643 7889999986
Q ss_pred Cc
Q 001157 663 DG 664 (1135)
Q Consensus 663 ~~ 664 (1135)
..
T Consensus 396 g~ 397 (561)
T COG5354 396 GA 397 (561)
T ss_pred Cc
Confidence 54
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=4.3e-11 Score=119.21 Aligned_cols=260 Identities=12% Similarity=0.153 Sum_probs=175.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccc---ccccccccccccccCCCeeEEEEcCCCC-
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS---AASMPLQNALLNDAAISVNRCVWGPDGL- 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~V~~v~~spdg~- 421 (1135)
.+-|.++.|...|. +||+|..+|.|.++.-..... . .++++... .+....-. --.-...|..+.|.+++.
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCCc
Confidence 45799999999998 799999999999997543221 0 11111000 00000000 012345689999999765
Q ss_pred -EEEEEeCCCeEEEEEcCCCCcee--------------------------------ee-eEeecCCCCeeEEEEecCCCc
Q 001157 422 -MLGVAFSKHIVHLYTYNPTGELR--------------------------------QH-LEIDAHVGGVNDIAFAHPNKQ 467 (1135)
Q Consensus 422 -~la~~~~dg~i~iwd~~~~~~~~--------------------------------~~-~~~~~h~~~v~~l~~s~d~~~ 467 (1135)
.+...+.|.+|++|.+....... +. .--.+|..-|+++.++.|++
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667799999999875422110 00 11236778899999999998
Q ss_pred eEEEEEcCCCcEEEEEcCCCee---EEEecCC-----CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc------
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS------ 533 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h-----~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------ 533 (1135)
.++++. |=.|.+|+++--.. +..++.+ ..-|++..|+|... +.++-.+..|+|++-|++....
T Consensus 178 -t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 666654 88999999874332 2222322 34578888998765 7888889999999999983221
Q ss_pred eEEec----------CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCC-----------c-
Q 001157 534 RVDYD----------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR-----------S- 590 (1135)
Q Consensus 534 ~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~-----------~- 590 (1135)
....+ .--..|..+.|+.+|+++++-. --+|.+||+. ..+++.+++.|..- .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 11111 1123688999999999999863 4679999994 56777777766421 1
Q ss_pred --eeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 591 --LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 591 --v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
-..++|+.++.++++|+....+++++...|
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 124789999999999999999999996544
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.2e-08 Score=113.15 Aligned_cols=231 Identities=12% Similarity=0.165 Sum_probs=143.6
Q ss_pred EEEEeCC----CeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC----CCcEEEEEcCCC--ee--
Q 001157 423 LGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DKMIKVWDVVAG--RK-- 489 (1135)
Q Consensus 423 la~~~~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~----d~~i~iwd~~~~--~~-- 489 (1135)
+++|+.. +.|.+|+++.. ..+...... .-......++++|+++ +|++... ++.|..|++... ++
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~--~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR--RLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS--EEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC--EEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 3455554 68999988332 223322222 2344567899999999 5555544 679999988763 33
Q ss_pred EEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCceEEe---c-----------CCCCeEEEEEEcCCCC
Q 001157 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDY---D-----------APGNWCTMMAYSADGT 554 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~---~-----------~~~~~v~~~~~s~~~~ 554 (1135)
+.+..........+++++++ .+|+++. .+|.|.++++.....+... . .......++.++|+|+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEESSSCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eeeeccCCCCcEEEEEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 33333334455678887655 6777766 5899999999875433221 1 1234678999999999
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCc--e--eEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECC--CCe--eeEE
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGA--I--KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--NMN--MLTT 625 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~--~~~~ 625 (1135)
++++... +...|++|++.... + ...+........+.+.|+|++++++... .+++|.++++. ++. .+..
T Consensus 157 ~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 157 FVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEec---CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 9998764 45679999987654 3 2334444444678899999999988765 67889999887 442 2233
Q ss_pred EeCC----CCCCCcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 626 VDAD----GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 626 ~~~~----~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
+... ........++++|||++|+++.. .+.|.+|++
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 3221 11113456777888877766553 445666665
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=4.7e-11 Score=119.07 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.3
Q ss_pred CCCeeEEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---ccEEEEEccc
Q 001157 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 913 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~ 913 (1135)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++++.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887653 5789999996 66666664 56788999999 89999988744 6799999999
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1135)
.+.+.... |. .++.++|||||++++++.. |..++||++..
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99888776 33 4789999999999998864 78899999964
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.2e-10 Score=132.45 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=136.4
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---ccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
..|.++|..... .+.+..+...+...+|+| ++++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 358888886443 344555667788999999 88888887654 479999999886433 334556677899999998
Q ss_pred eEE-EEcCCC--cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--C--cEEEEeccCCccccc
Q 001157 938 ALV-SSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECSRSW 1010 (1135)
Q Consensus 938 ~l~-s~~~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~--~i~vwd~~~~~~~~~ 1010 (1135)
.|+ +.+.++ .|++||+.+++... +. .+. .......|+|||++|+.+.+ + .|.++|+.+.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l~---~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---LT---NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---CC---CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 776 444444 58899998765321 11 111 23456789999999887432 3 577777744433333
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDG---AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
.. +...+..+.|+|||++|+.++.++ .|.+||+.++... .+... .......|+| ++++|+
T Consensus 318 ~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~------------~~~~~p~~sp-dg~~l~ 380 (417)
T TIGR02800 318 TF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT------------GLDESPSFAP-NGRMIL 380 (417)
T ss_pred ec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC------------CCCCCceECC-CCCEEE
Confidence 22 245567889999999999888776 7999999886542 22100 1123457999 677777
Q ss_pred EEecCC
Q 001157 1088 LGMSDG 1093 (1135)
Q Consensus 1088 s~~~Dg 1093 (1135)
.++.++
T Consensus 381 ~~~~~~ 386 (417)
T TIGR02800 381 YATTRG 386 (417)
T ss_pred EEEeCC
Confidence 666654
No 259
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=9.8e-11 Score=116.79 Aligned_cols=163 Identities=18% Similarity=0.320 Sum_probs=115.5
Q ss_pred eEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 412 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998876533 2345666664433222221222 345799999999999755666777889999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
||++ ++.+..+. ...++.+.|+|.+ +++++++.+ |.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777774 5678899999876 889888754 679999999666655543 335789999999999998
Q ss_pred EeeC--CCCCceEEEEeCCCCceeEEe
Q 001157 559 CGTS--KEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 559 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+... ...++.++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8742 1236678999974 6655543
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.8e-10 Score=131.40 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=149.3
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++..|....+....+.+...+....|||||+.+++++..+ ..|.+||+.+++... +.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~ 239 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------IT 239 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------cc
Confidence 35555555455555556778899999999999766655433 368899998875432 22
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--cEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~ 480 (1135)
...+.+...+|||||+.|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|+
T Consensus 240 ~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy 314 (430)
T PRK00178 240 NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIY 314 (430)
T ss_pred CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEE
Confidence 233445678999999988854 4444 6888899886532 33445556677899999995 233333333 677
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-C--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-G--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++|+.+++... +...........|+|++ +.++..+.+ + .|.+||+.+++.... .. ........|+|||+.++
T Consensus 315 ~~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~-~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 315 KVNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRIL-TD-TSLDESPSVAPNGTMLI 389 (430)
T ss_pred EEECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEc-cC-CCCCCCceECCCCCEEE
Confidence 88887776433 22122233456787765 667666543 3 578889887654332 22 12223568999999998
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
..... .+...|++++.. +...+.+..... .+...+|+|
T Consensus 390 ~~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 390 YATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 77642 245668888875 444444443322 455566665
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.3e-08 Score=103.99 Aligned_cols=300 Identities=12% Similarity=0.172 Sum_probs=188.3
Q ss_pred CCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEE--eCCCCceeEE--eecccCCcee
Q 001157 520 DGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW--NESEGAIKRT--YSGFRKRSLG 592 (1135)
Q Consensus 520 dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w--d~~~~~~~~~--~~~~~~~~v~ 592 (1135)
++-|.+|++++..... .........+-++|+|+++.|+++..+++ .+.|.-| |-++|++... ...... +..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 5679999998544333 23335567888999999999998876532 4445554 4444654322 222122 347
Q ss_pred EEEEeCCCCEEEEEe-cCCeEEEEECCC-CeeeEE---EeCCCC-------CCCcCeEEEecCCCEEEEEeC-CCcEEEE
Q 001157 593 VVQFDTTRNRFLAAG-DEFQIKFWDMDN-MNMLTT---VDADGG-------LPASPRLRFNKEGSLLAVTTS-DNGIKIL 659 (1135)
Q Consensus 593 ~~~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~~~~~-------~~~v~~~~~s~~~~~l~~~~~-dg~v~iw 659 (1135)
.++++++|++++++. .-|.|.++-++. |.+... +...+. ...+....+.|++++|++..- .-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999987 668999999865 443322 222111 122678899999999887753 2378899
Q ss_pred ECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccc
Q 001157 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1135)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
++..| .+...-..
T Consensus 173 ~~~dg-~L~~~~~~------------------------------------------------------------------ 185 (346)
T COG2706 173 DLDDG-KLTPADPA------------------------------------------------------------------ 185 (346)
T ss_pred EcccC-cccccccc------------------------------------------------------------------
Confidence 98866 21110000
Q ss_pred cccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecc-cceeEEEeecccCCCCCCcccccccc
Q 001157 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAP 818 (1135)
Q Consensus 740 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~ 818 (1135)
.+ ......+.++|.|+++.....++ +++|.+|...... ++
T Consensus 186 -----------~v-----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----g~------- 226 (346)
T COG2706 186 -----------EV-----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----GK------- 226 (346)
T ss_pred -----------cc-----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----ce-------
Confidence 00 02234578999999998877666 7999999875421 11
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCC--ceEE--EEeeCCCCCeeEEEEeCC
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT--FKVM--TMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~--~~~~--~~~~~~~~~v~~l~~sp~ 892 (1135)
+-.+.+-..+...+.+ .....++.+++||++|.++. ...|.+|.+.. +++. .....+....+.+.|++
T Consensus 227 -~~~lQ~i~tlP~dF~g----~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~- 300 (346)
T COG2706 227 -FEELQTIDTLPEDFTG----TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP- 300 (346)
T ss_pred -EEEeeeeccCccccCC----CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-
Confidence 0111222223333444 67788999999999999987 46788888764 3321 22223334468899999
Q ss_pred CCcEEEEEeCC-ccEEEEEcc--cceEeEeec-CccCceEEEEEc
Q 001157 893 DNNIIAIGMED-SSVQIYNVR--VDEVKTKLK-GHQNRITGLAFS 933 (1135)
Q Consensus 893 ~~~~lasg~~d-g~v~iwd~~--~~~~~~~l~-~h~~~i~~l~~s 933 (1135)
++++|+++..+ .+|.+|..+ +|++..... .......||.|.
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 78887777655 468888665 565444332 334455667664
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=5.8e-09 Score=115.73 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=164.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 408 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
......++++|++++|.++.. ++.|..|.+... ..+...............++++|+++. ++++...++.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 445678999999999999876 579999998875 334433344334456678999999994 33444569999999
Q ss_pred EcCC-CeeEEE---ec----------CCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCc-e---EEe-cCCCC
Q 001157 483 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS-R---VDY-DAPGN 542 (1135)
Q Consensus 483 d~~~-~~~~~~---l~----------~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~-~---~~~-~~~~~ 542 (1135)
++.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 544332 21 123557788998865 6665554 456899999977652 1 122 23455
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC--CCce--eEEeecc----c-CCceeEEEEeCCCCEEEEEe-cCCeE
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----R-KRSLGVVQFDTTRNRFLAAG-DEFQI 612 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~-~~~v~~~~~s~~~~~l~~~~-~dg~i 612 (1135)
....++|+|++++++.... ..+.|.++++. ++.. +...... . ......+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988763 57789998887 4432 2222221 1 11467799999999988865 67889
Q ss_pred EEEECC--CCe--eeEEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECC
Q 001157 613 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 613 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~ 662 (1135)
.+|++. +++ .+..+...+. ....++++|+|++|+++. .++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999984 233 3334443222 468999999999999887 46789999774
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.3e-10 Score=131.14 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=145.4
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCC--cEEEEEcCCccccccccceeeccccccccccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++..|....+....+.+...+.+..|||||++++.+...++ .|.+||+.+++... +.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt 258 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VT 258 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ec
Confidence 344444433334444556778999999999997665554444 58888988775422 11
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCCe--EEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--cEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~-~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~ 480 (1135)
...+.....+|||||+.|+.. +.++. |.+||+.+++. . .+..+.......+|+|||+. ++++...++ .|.
T Consensus 259 ~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy 333 (448)
T PRK04792 259 SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIY 333 (448)
T ss_pred CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E---ECccCCCCccceEECCCCCE-EEEEECCCCCceEE
Confidence 122234578999999988764 55664 77788887653 2 33445556678899999994 233443344 566
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++|+.+++... +..........+|+|++ ++++..+. ++ .|.++|+.++.... +... .......|+|||+.++
T Consensus 334 ~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 334 RVNLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred EEECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEE
Confidence 77877776543 32222223456787765 56655544 44 35556776655432 2221 1223458999999998
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
..... ++...+++++. +|...+.+..... .+...+|+|
T Consensus 409 ~~~~~-~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 409 YSTTY-QGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEec-CCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 76642 34556888886 5666666655433 566677776
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.32 E-value=9.2e-09 Score=110.17 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=122.0
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-ceEe-E-
Q 001157 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVK-T- 918 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~-~- 918 (1135)
.++++|||++|++.. +..|.+.|+.+++.+.++.... ...-...++ +..+ +-+.||......+.+ |+.. .
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 577888888888765 5778888988888888776432 222222222 2211 122344433333221 2211 1
Q ss_pred --eecCccCceE-EEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC----CCCCceeEEECCCCcEEE
Q 001157 919 --KLKGHQNRIT-GLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS----PLVGETKVQFHNDQTHLL 990 (1135)
Q Consensus 919 --~l~~h~~~i~-~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~fspdg~~l~ 990 (1135)
.+.+-...+. .-.|++ ||+++....+ |+|.+-|+...+......+........ .......++++|||++++
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1111001000 003455 7877776666 999999976544322222222111100 113445599999999999
Q ss_pred EEE---C--------CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEecCCCceeeccC
Q 001157 991 VVH---E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 991 ~~~---d--------~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~~-~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+.. . +.|.++|. +.+.+..+.. ...+..++|||||+ +|++.+ .++.|.+.|+.+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 1 47999999 6666665543 56899999999999 888766 57889999999999998873
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.1e-09 Score=126.58 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=142.6
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--cE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i 479 (1135)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887644 369999998875432 2223344567899999994 233555555 68
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
++||+.+++. ..+..+........|+|++ +.++..+ .+| .|.++|+.+++... +...........|+|||+++
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889988764 3455566666677888765 5555554 333 57777776665432 22223334467899999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC---CeEEEEECCCCeeeEEEeCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..... ++...|.+||+.+++... +.... ......|+|+|+.++..+.+ ..++++++... ....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRI-LTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 877642 234568999998876533 32211 12246899999999886643 35777777543 333343322 2
Q ss_pred CcCeEEEec
Q 001157 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~s~ 642 (1135)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456666765
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=7.6e-10 Score=126.86 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=141.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34466788999999999999887543 368899998875421 2222333457899999995 3344556664
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCC--eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.++|+.+++. ..+..+.......+|+|++ +.++..+ .++ .|.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 77889887764 4555565666778898865 6665544 344 46666776555332 3223333445789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec-CC--eEEEEECCCCeeeEEEeCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
++..+.. .+...|.++|+.+++... +.... ......|+|+|+.|+..+. ++ .+++++. ++.....+....+
T Consensus 364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g- 437 (448)
T PRK04792 364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG- 437 (448)
T ss_pred EEEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC-
Confidence 9876642 234467888988876533 32221 1223579999998887653 33 3777777 4555555544322
Q ss_pred CCcCeEEEec
Q 001157 633 PASPRLRFNK 642 (1135)
Q Consensus 633 ~~v~~~~~s~ 642 (1135)
.+...+|+|
T Consensus 438 -~~~~p~Wsp 446 (448)
T PRK04792 438 -EVKSPAWSP 446 (448)
T ss_pred -CcCCCccCC
Confidence 456677776
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=3.6e-09 Score=113.23 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=150.5
Q ss_pred eecCCCEEEEEeC-----------CeEEEEeCCCceEEEEeeCCCC-------CeeEEEEeCCCCcEEEEEe-C-CccEE
Q 001157 848 LSKNDSYVMSASG-----------GKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 907 (1135)
Q Consensus 848 ~s~dg~~la~~sd-----------g~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp~~~~~lasg~-~-dg~v~ 907 (1135)
+||||+.|+++.. +.|.+||..+++.+..+.-... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998877643 6799999999999998875332 234789999 888887665 4 68999
Q ss_pred EEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC-CC
Q 001157 908 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 986 (1135)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-dg 986 (1135)
+.|+.+++.+.++.--. ...-...+. ..+++- +.||......+.+.............+.... .. ..-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~-v~-~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY-LI-NHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecC-CccEEE-eecCceEEEEecCCCceEEeeeeeecCCccc-cc-cCCceEcCCC
Confidence 99999999998876422 112222222 222221 2344444433332221111111111110000 00 0114555 99
Q ss_pred cEEEEEECCcEEEEeccCCc------ccccCCCC----CCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEec
Q 001157 987 THLLVVHESQISVYDSKLEC------SRSWSPKD----ALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1046 (1135)
Q Consensus 987 ~~l~~~~d~~i~vwd~~~~~------~~~~~~~~----~h~~~i~~~~~s~dg~~l~s~~----------~dg~V~vwd~ 1046 (1135)
+++.++.+|.|.+.|+.+.. ...+.... -..+.+.-+++++||+.+++.. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 99999888999999952211 11111110 0233445599999999888743 1247999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC-EEEEEe-cCCcEEEEecCCCc
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-~l~s~~-~Dg~i~lW~~~~~~ 1104 (1135)
.+++.+.++... ..+..++++| |++ +|.+.+ .++.|.+.|..+.+
T Consensus 287 ~t~kvi~~i~vG------------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 287 KTGKRLRKIELG------------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCeEEEEEeCC------------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999887522 4677899999 666 666665 67899999998887
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.1e-09 Score=114.08 Aligned_cols=292 Identities=11% Similarity=0.119 Sum_probs=186.5
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC-eeEEEeecCC
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES-AACIALSKND 852 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-v~~l~~s~dg 852 (1135)
.|.-+.|||+.++|++-+..-.+.-|+-. ..-.+.+||+.+|.+........ . ... -.-..||.|+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~-~-~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIK-S-PYLKWPIFRWSHDD 317 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccC-C-CccccceEEeccCC
Confidence 36678899999999987664322222100 01134667777777655432210 0 222 2347899999
Q ss_pred CEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC-----ccEEEEEcccceEeEeecCccCce
Q 001157 853 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRI 927 (1135)
Q Consensus 853 ~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~~~~l~~h~~~i 927 (1135)
+|+|--..++|.||+..+..++-.-.-.-..|....|+| .+.+||.-+.. ..+.+-.+.+++.+++-.-|.-.=
T Consensus 318 Ky~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD 396 (698)
T KOG2314|consen 318 KYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD 396 (698)
T ss_pred ceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeec
Confidence 999988889999999988655433333356789999999 88898875432 367788888888887766555444
Q ss_pred EEEEEcCCCCeEEEEc----------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE--EE--
Q 001157 928 TGLAFSPTLNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VH-- 993 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~-- 993 (1135)
..|.|-.+|.+|+.-- .=..+.|+.+...+.. +....-. ..|...+|-|.|..+++ ++
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----ve~velk----e~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----VEVVELK----ESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----ceeeecc----hheeeeeeccCCCeEEEEEcccc
Confidence 5677888888887421 1123555555543321 1111111 46789999999999888 33
Q ss_pred CCcEEEEecc--CCcccccCCCCCCCCCeEEEEEccCCCEEEEE---ecCCcEEEEecCCCceeeccCCCcccCccccCC
Q 001157 994 ESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAG---FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 994 d~~i~vwd~~--~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~---~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
..++.+|.++ ........... ....+.+.|||.|++++++ |..|.+..+|+.-......- .| .
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-----~~-----e 536 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-----SP-----E 536 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-----Cc-----c
Confidence 3578999883 22222222222 3557789999999998875 45788999999842222111 11 2
Q ss_pred CCCCcEEEeeCCCCCCEEEEEec------CCcEEEEecC
Q 001157 1069 NTAHPLVIAPHPSEPNQIALGMS------DGAVHVVEPS 1101 (1135)
Q Consensus 1069 ~~~~~~~~~~sp~~~~~l~s~~~------Dg~i~lW~~~ 1101 (1135)
| -..+.+-|.| .|+|++++++ |..-++|++.
T Consensus 537 h-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 537 H-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred c-cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 2 4456799999 8899998875 4455667663
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.8e-09 Score=122.69 Aligned_cols=226 Identities=11% Similarity=0.075 Sum_probs=141.4
Q ss_pred cccCCCeeEEEEcCCCCEEE---EEeCC--CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE-EcC---
Q 001157 405 NDAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CGD--- 475 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la---~~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s-~~~--- 475 (1135)
......+.+-+|||||+.++ +...+ ..|.+.++.+++... +....+.....+|||||++ |+. ...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~--Laf~s~~~g~ 254 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL--LAFISDRYGN 254 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE--EEEEECCCCC
Confidence 33455677889999998633 33333 358888888876432 2223444567899999995 443 322
Q ss_pred -CCcEEEEEcCCC---eeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEe--CCC-CCceEEecCCCCeEEEE
Q 001157 476 -DKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWL--YDY-LGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 476 -d~~i~iwd~~~~---~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd--~~~-~~~~~~~~~~~~~v~~~ 547 (1135)
|..+.+|++..+ +......++.......+|+|++ +.|+..+ .+|...+|. +.. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 334455777653 3333332333444677888765 6666555 467655664 432 23344444455567788
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe---cCCeEEEEECCCCeeeE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~ 624 (1135)
.|+|||+.|+..... ++...|++||+.+++....... . ..+....|+|||+.|+..+ ....|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999877642 3456799999998876443322 2 2456789999999887644 24578999998877554
Q ss_pred EEeCCCCCCCcCeEEEecCC
Q 001157 625 TVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~ 644 (1135)
..... ..+...+|+|-.
T Consensus 410 Lt~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGS---GEKRFPSWGAFP 426 (428)
T ss_pred eecCC---CcccCceecCCC
Confidence 44322 235667787743
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=7.1e-10 Score=128.22 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=146.4
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC--CcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..++..|.........+.+...+.+.+|||||++++++...+ ..|.+||+.+++... +
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~ 229 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------V 229 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------e
Confidence 345555544444445555777899999999999655444332 479999998875432 2
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCC--c
Q 001157 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--M 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~--~ 478 (1135)
..+.+.+.+++|+|||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+ .++ .
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQ 303 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCce
Confidence 2345567789999999988754 3343 5888998876532 3334555556789999999 455443 333 6
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.++|+.+++. ..+..+...+....|+|++ .+++.++.++ .|.+||+.++.... +.. .......+|+|||+.
T Consensus 304 iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 304 IYMMDADGGEV-RRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRM 378 (417)
T ss_pred EEEEECCCCCE-EEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCE
Confidence 88888877664 3444455667778888765 7888777765 78899988744332 222 223345689999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
|+...... +...+++.+.. +.....+..
T Consensus 379 l~~~~~~~-~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 379 ILYATTRG-GRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEEeCC-CcEEEEEEECC-CceeeECCC
Confidence 98877532 34456666643 444444443
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=7e-10 Score=119.63 Aligned_cols=194 Identities=13% Similarity=0.155 Sum_probs=155.0
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe------c------------CCCceEEEEEcCCCc
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------d~~~~~l~s~~~d~~ 478 (1135)
.|-+.++|....||.+++|+...++.-..+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999999876543222222223444555553 1 112237888999999
Q ss_pred EEEEEcCCCeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
|.++++..|+....+. .|.+.|+++.++..- .+|.+++.|+.+..|+................+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988886 599999999886544 799999999999999999888888888888899999999999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC-----CCEEEEE-ecCCeEEEEECCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLAA-GDEFQIKFWDMDN 619 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~iwd~~~ 619 (1135)
++++ ++|.+||+++++.+..|.+|.. +|++++|..+ |.+++++ ..+.-+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9884 4699999999999999999988 9999999887 7777774 4566677886654
No 272
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.19 E-value=1.8e-10 Score=110.87 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=125.7
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHH
Q 001157 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1135)
Q Consensus 3 ~~~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1135)
...+|+.|||+.||-..||.++|+.+.+|+|+..+ ....|.+|..|+-++|+..+.+|.+..-.. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 34689999999999999999999999999999872 467889999999999999999986543222 22388
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC--chhHHHHHHHHHHhhc
Q 001157 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD--TKSARNIMLVELKKLI 151 (1135)
Q Consensus 74 ~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~ 151 (1135)
|.+.+|+++|++..+...+|+.|+|.++.|....+++.++.|+..|..--++..+... .+. ....|.++...+.+.|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877777788777765543232111100 000 2344777777777766
Q ss_pred ccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001157 152 EANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1135)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q 182 (1135)
-...- . --..+|..||+.-+..|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 43111 0 01447888886655555
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.7e-09 Score=114.16 Aligned_cols=190 Identities=17% Similarity=0.244 Sum_probs=147.8
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE--------------------cCC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------------------spd 419 (1135)
.++|..+.||.++||+..+++.-..... ...-++.-++..| +-|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 4788889999999999998865432100 0011222333333 223
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
...++-|...|.|.+|++..|+.-. ...-..|.+.|.++.++.+-. +|.|++.|+.+..|+..+++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~-~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITA-KLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEE-EEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 4577888889999999999987544 223357999999999998887 8999999999999999999999999999999
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC-----CCEEEEEeeCCCCCceEEEEeC
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+.+++++|+ |..+++++ +.|++||+++.+.+..+++|.+.|++++|..+ |.++++... ...-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999886 47888876 78999999999999999999999999999887 788886642 3444666654
Q ss_pred C
Q 001157 575 S 575 (1135)
Q Consensus 575 ~ 575 (1135)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=5.7e-08 Score=110.27 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=96.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++.++.++.|..+|..+|+.+..+.-.......... ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999998776543322222222 236788888999999999998888776554432221122
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce-----eEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
. .+..++.+. .++.++.||.++|+.+..+..... .+ ...... +..++.+..++.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 377899999999998877654332 11 111122 246777888899999999888766
Q ss_pred EEE
Q 001157 624 TTV 626 (1135)
Q Consensus 624 ~~~ 626 (1135)
...
T Consensus 214 W~~ 216 (377)
T TIGR03300 214 WEQ 216 (377)
T ss_pred eee
Confidence 543
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=4.7e-09 Score=103.00 Aligned_cols=250 Identities=15% Similarity=0.114 Sum_probs=163.6
Q ss_pred CCCeeEEEeec---CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC---CCeeEEEEcCC
Q 001157 346 GSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGPD 419 (1135)
Q Consensus 346 ~~~V~~~~fsp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~spd 419 (1135)
...+..+.|.- +|...++-...+|.|.++.......... ++ . +..-. ....++.|++.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~--~------------ls~~ki~~~~~lslD~~~~ 132 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR--G------------LSSKKISVVEALSLDISTS 132 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec--c------------cchhhhhheeeeEEEeecc
Confidence 44677777763 4443556667788999987654332211 00 0 11111 12457889999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-CCeeEEE-ecCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHE 497 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-l~~h~ 497 (1135)
+..++++..+|.+.+-+..... +......++|...++...|+..... ++.+|++|+.+..||++ .++.+.. .+-|.
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred CceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeee
Confidence 9999999999999855544332 3333367789999999999876665 89999999999999998 4555544 55689
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC--EEEEEeeCCCCCceEEEEeCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
..|.+|.-+|. ...++++|+.|..|++||.++......-..-.+.|..+..+|.-. .++++-.. | .++.+..
T Consensus 211 ~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~--G---~ki~~~~ 284 (339)
T KOG0280|consen 211 SGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN--G---AKILDSS 284 (339)
T ss_pred cceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc--C---ceEEEec
Confidence 99999987765 448999999999999999997776665555668999999998543 34444321 1 4444444
Q ss_pred CC--c---eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEE-EEECCCC
Q 001157 576 EG--A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (1135)
Q Consensus 576 ~~--~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 620 (1135)
.+ + .....+.|.. -+..-.|......+++++ .|+.++ +|-..++
T Consensus 285 ~~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 285 DKVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 32 2 2233344433 333344433335677765 566644 6655443
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=2.9e-10 Score=124.20 Aligned_cols=284 Identities=15% Similarity=0.223 Sum_probs=196.4
Q ss_pred cCCcceeeecCCCCCCceeecCC-------cceeEEEEecCC--CCeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccc
Q 001157 312 TGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~d~-------~~~~~~~~l~h~--~~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~ 381 (1135)
.+++..+..+|.|+.+++++.-+ .++.+.+-+.|- -.|-.+.|||.-. -+-++........+|++.....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 45778888999998887765433 577777778764 4588899998532 2344455566778898864432
Q ss_pred cccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEE
Q 001157 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 460 (1135)
-. ...++.||+..|+.+.|.|. ...||+++.|..+..||+.+... .......-......++
T Consensus 104 ~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 104 NA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVK 165 (1081)
T ss_pred cc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceee
Confidence 11 11247799999999999995 55899999999999999998653 2223344455677899
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ec
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YD 538 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~ 538 (1135)
|+-... .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+....... ..
T Consensus 166 wnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 166 WNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred ecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceec
Confidence 987666 4666677889999999875 56789999999999998865433 4688999999999999876544332 22
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE---------EeCCC-CceeEEeecccCCceeEEEEeCCC--------
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTTR-------- 600 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~-------- 600 (1135)
....+|..-++.|-|+-...--. .|+..+.+ |+..+ .+++.+|.||.+ .|....|-..+
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred cccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCc
Confidence 23446777777776654332211 12333333 33332 467889999987 44443333222
Q ss_pred --CEEEEEecCCeEEEEECCC
Q 001157 601 --NRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 601 --~~l~~~~~dg~i~iwd~~~ 619 (1135)
-.|++-+.|.++++|-+.+
T Consensus 320 rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeEEEeecCCceEeeeccH
Confidence 3699999999999998864
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=4e-08 Score=123.03 Aligned_cols=257 Identities=14% Similarity=0.185 Sum_probs=162.2
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeC--C------------CCCeeEEEEeCCCCcEEEEE-eCCccE
Q 001157 844 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIG-MEDSSV 906 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~--~------------~~~v~~l~~sp~~~~~lasg-~~dg~v 906 (1135)
..+++++++..+.++. ++.|.+||... +.+..+.+ . -.....+++++ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4688988655444444 68899999864 44444432 1 12357899999 56655444 456789
Q ss_pred EEEEcccceEeEeecCc-----------------cCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccce---eee
Q 001157 907 QIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSR---FIQ 965 (1135)
Q Consensus 907 ~iwd~~~~~~~~~l~~h-----------------~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~---~~~ 965 (1135)
+++|..++. +.++.+- -....+++|+| ++.++++.+.++.|++||..++...... ...
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 999988765 3333210 11246899999 5667788888899999999876532100 000
Q ss_pred cCCCCC---CCCCCceeEEECCCCcEEEEE--ECCcEEEEeccCCcccccC------------CC--CC-----CCCCeE
Q 001157 966 APAGRQ---SPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWS------------PK--DA-----LPAPIS 1021 (1135)
Q Consensus 966 ~~~~~~---~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~~~~~~~~------------~~--~~-----h~~~i~ 1021 (1135)
...+.. ........++|+|||+.|+++ .++.|++||++........ .. .+ ....-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 011111 111356789999999876663 5789999998432211100 00 00 011235
Q ss_pred EEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC--cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEe
Q 001157 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS--AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1022 ~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~ 1099 (1135)
.++++++|.++++-+.++.|++||..++......... .+.-.....+.-..+..+++++ +++++++.+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 8999999998888889999999999987654322110 0000001122334678899999 778999999999999999
Q ss_pred cCCCc
Q 001157 1100 PSDAE 1104 (1135)
Q Consensus 1100 ~~~~~ 1104 (1135)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98876
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=4.1e-09 Score=105.56 Aligned_cols=212 Identities=16% Similarity=0.245 Sum_probs=138.8
Q ss_pred EeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-CCeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEE
Q 001157 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~ 525 (1135)
.++||.+.|++...-|-.. -+++.+.|.+++||--+ .++.-..+. .-..+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5678999999888888777 68999999999999543 344333332 234667777776654 78888989999988
Q ss_pred EeCC----CCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe-CCCCceeEEeecccCCceeEEEEeCCC
Q 001157 526 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
+.+. ..........|...+..+.|+-...++++++.|+ .+ .|. .+.+..+..+.-.. ...++.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk----~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK----QF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecccc----ce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 8553 3334445667888999999999999999987532 23 333 23333222221111 0111111111
Q ss_pred CEEEEEecCCeEEEEECC--CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCc
Q 001157 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1135)
+.+.|...|.|.+-.+. .-.++.++.++ ...+.+++|.+...+|++|..|..+.+||+.-.......+.+|
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 44555566666665543 44566666655 5589999999999999999999999999986553333344443
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.07 E-value=1.6e-08 Score=99.32 Aligned_cols=200 Identities=13% Similarity=0.120 Sum_probs=137.4
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEE--EeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-cceEeE
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKT 918 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~ 918 (1135)
..++.|++.+..++++. +|.+.+-+.....+.. .++.|.-++....|+..+.+++.+|++|+.+.-||+. .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778899899888886 7888876666555544 7889999999999998778899999999999999998 555555
Q ss_pred e-ecCccCceEEEEEcCC-CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCc--EEEEEEC
Q 001157 919 K-LKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT--HLLVVHE 994 (1135)
Q Consensus 919 ~-l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~--~l~~~~d 994 (1135)
. -+-|...|.++.-+|. +.+|+||+.|..|++||..+..+. ...... .++|+.+..+|.-. .|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---l~~~~v-----~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---LFKAKV-----GGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc---cccCcc-----ccceEEEEecchhhhHHHHHHHh
Confidence 5 5678899999988764 678999999999999999863321 111111 16899999999644 3444555
Q ss_pred CcEEEEeccCCccc---ccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEE-EEecCCCc
Q 001157 995 SQISVYDSKLECSR---SWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIG-VFDAETLR 1050 (1135)
Q Consensus 995 ~~i~vwd~~~~~~~---~~~~~~~h~~~i~~~~~s~dg~~l~s~~-~dg~V~-vwd~~~~~ 1050 (1135)
+..+|-+.+.+... .+.....|.+-...-.|.....+|||++ .|+.++ +|-.-++.
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55666666322222 2222333343333333422335688754 466644 77655553
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=3.2e-07 Score=115.07 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=59.9
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee-------------cCccCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-------------KGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-------------~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
...+++++ +|.++++-..++.|++||..++...... .+.-....+|+++++|+.+++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 45899999 7888888889999999999887654322 112235778999999999999999999999
Q ss_pred EeCCCccc
Q 001157 951 WSIDKWEK 958 (1135)
Q Consensus 951 Wd~~~~~~ 958 (1135)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.02 E-value=1.2e-07 Score=107.62 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=172.2
Q ss_pred eeecCCcceeEEEEecCCCCee-EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc
Q 001157 329 VYSQDDLTKTVVRTLNQGSNVM-SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~-~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
++.+|..+++.+....-...+. .+. .++. .+++++.+|.+..+|..+|+.+-+..+
T Consensus 77 v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~-------------------- 133 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDERLSGGVG--ADGG-LVFVGTEKGEVIALDAEDGKELWRAKL-------------------- 133 (377)
T ss_pred EEEEEccCCcEeeeecCCCCcccceE--EcCC-EEEEEcCCCEEEEEECCCCcEeeeecc--------------------
Confidence 4444555566655555333332 222 2344 455678899999999999987543111
Q ss_pred CCCeeE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCe-----eEEEEecCCCceEEEEEcCCCcEEE
Q 001157 408 AISVNR-CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-----NDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 408 ~~~V~~-v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.+.+.+ ... .+..++.++.++.+..||.++|+.+... ......+ .+.... + . .++.+..++.+..
T Consensus 134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~a 204 (377)
T TIGR03300 134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVA 204 (377)
T ss_pred CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEE
Confidence 111111 111 3456777788999999999998765422 1111111 111222 2 3 4677888999999
Q ss_pred EEcCCCeeEEEecCCCC----C---eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 482 WDVVAGRKQYTFEGHEA----P---VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~----~---v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
+|+++|+.+.+...... . ...+.-.|.-.+..++.++.+|.++.||..+++......... ..... .++.
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~ 280 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDN 280 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCC
Confidence 99999987765431100 0 001111111123578888899999999999887766554221 11122 3456
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.++.+. .++.++.+|..+|+.+................ .+..+++++.+|.|+++|..+++.+..++.+... .
T Consensus 281 ~vyv~~----~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~ 353 (377)
T TIGR03300 281 RLYVTD----ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-I 353 (377)
T ss_pred EEEEEC----CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-c
Confidence 676664 37889999999998876653322212222222 3678999999999999999999999988765421 1
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
..+.++. +..|+.++.||.|..|
T Consensus 354 ~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE--CCEEEEEeCCceEEEe
Confidence 1222232 3457888999998765
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=2.1e-07 Score=104.95 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=132.5
Q ss_pred CCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC---CCcEEEEEcCCccccccccceeecccccccccccc
Q 001157 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
...++..|....+....+.. +.+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 44555555544443333334 378899999999864444333 3468888998876432
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC--
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~-- 477 (1135)
+....+.+....|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++. ....+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~-Sdr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFV-SDRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEE-ECCCCCc
Confidence 2234455667889999998876533 35688888877653 3 233333334456899999963333 32233
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC---------CeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.|.+.|+.+|+..+.... ... ...|+|++ +.++..+.. ..|.+.|++++... .+... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeE
Confidence 688889887776443221 111 23787765 666655543 36778888776543 33322 2333688
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999998877643 2345577777753
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=3.2e-09 Score=127.36 Aligned_cols=201 Identities=14% Similarity=0.236 Sum_probs=161.8
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..+-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445667899999999999999999999999999998877655443 33 8899999999999 678888899999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+. .+.....+.|+.......|-. ..+++++ .++.+.+||.-.... -.....|.+.++++++.|....+++|
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 65 666777888998888888754 3456654 578899999654332 22347789999999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+. +|.|++||++..+++..++. +. ...++++|+..|.|+||++.....+..++.
T Consensus 2355 gr----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CC----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 84 78899999998877766654 33 467899999999999999998887777653
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=5.8e-09 Score=110.17 Aligned_cols=245 Identities=14% Similarity=0.193 Sum_probs=170.4
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ce---eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 477 (1135)
..+.||...|..++--.+.+-+++++.|++|++|.++... .+ .+..++..|+.+|.++.|-.+.+ +++++ |+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DG 804 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cC
Confidence 3478999999999888888899999999999999987532 12 24457789999999999999987 66654 88
Q ss_pred cEEEEEcCCCeeEEEecC--CCCCeEEEEeccCCCccEEEEE-EcCCeEEEEeCCCCCceEEe-----cCCCCeEEEEEE
Q 001157 478 MIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAY 549 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~--h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~ 549 (1135)
.|++||.--|+.+..+.. ..+.+..+...++-+...++.+ +...+|+++|.+..+-...+ .+....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999888877653321 1222333332344344555555 78899999999887765543 344567899999
Q ss_pred cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE-EECCCCeeeEEEeC
Q 001157 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDA 628 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 628 (1135)
.+.|++++++-. .|.|.+.|.++|+.+..++.-.- ....+ -.|..+.++....|.++.+ |...++......+.
T Consensus 885 a~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllql-aapsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 885 ADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQL-AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhh-cCchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999999998764 78899999999998877664322 11112 1344566777778888888 98877765555443
Q ss_pred CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 629 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
... +. --...-|.-|+++...+.+.+|.
T Consensus 959 ppe--pa--hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 959 PPE--PA--HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCc--ch--hhhhccCceeEEeccCcEEEEEe
Confidence 211 10 00112366677777777777775
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=1e-06 Score=87.60 Aligned_cols=189 Identities=14% Similarity=0.178 Sum_probs=118.3
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCC-------CCCeeEEEEeCCC-----CcEEEEEeCCccE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQD-----NNIIAIGMEDSSV 906 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~-----~~~lasg~~dg~v 906 (1135)
...-+.++||||+.+||.+. .|+|++||+....+ ..+... ...|..+.|.+-. ...|.+-..+|.+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34567899999999999997 89999999976433 333321 2456777776521 2246667788888
Q ss_pred EEEEcccc-----eEeEee--c-CccCceEEEEEcCCCCeEEEEcCCCc-----------EEEEeCCCcccccceeeecC
Q 001157 907 QIYNVRVD-----EVKTKL--K-GHQNRITGLAFSPTLNALVSSGADAQ-----------LCMWSIDKWEKLKSRFIQAP 967 (1135)
Q Consensus 907 ~iwd~~~~-----~~~~~l--~-~h~~~i~~l~~s~d~~~l~s~~~D~~-----------i~iWd~~~~~~~~~~~~~~~ 967 (1135)
+=|-+..+ +....+ . .+...|.++.++|..++|+.||.... +.-|.+-++.
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~---------- 191 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS---------- 191 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC----------
Confidence 87776432 223332 2 24668999999999888777663321 2233332221
Q ss_pred CCCCCCCCCceeEEECCCCcEEEEEECC------cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001157 968 AGRQSPLVGETKVQFHNDQTHLLVVHES------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1135)
Q Consensus 968 ~~~~~~~~~v~~~~fspdg~~l~~~~d~------~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~ 1040 (1135)
|..+.+....|+ +..+|.+ +.+... ........|-.|..||||++||+...+|.
T Consensus 192 ----------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs---~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 192 ----------------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFS---RQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred ----------------CcEEEccccCccccccccccceeeccceeeee---ccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 111111111111 1123333 211111 11112678999999999999999999999
Q ss_pred EEEEecCCCceeeccCCC
Q 001157 1041 IGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 1041 V~vwd~~~~~~~~~~~~~ 1058 (1135)
|.+|++.+.+++..+..+
T Consensus 253 lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 253 LSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEecCcchhhcccchh
Confidence 999999999988877643
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.5e-06 Score=97.26 Aligned_cols=553 Identities=13% Similarity=0.112 Sum_probs=280.8
Q ss_pred eEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 412 NRCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+-..|+|...++|+++- .|.|-||- ++|+.-+. .+.+ -.+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P---~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYP---VHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccc---eehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34578999888888753 57888875 44443221 1222 2357799999876 8899999999999998777
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC--C--CC--eEEEEEEcCCCCEE---E-
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTRL---F- 557 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~l---~- 557 (1135)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|..+-.+....... | +. ...|...++++.-+ +
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6655566799999999998866 8999999999999998764443332211 1 11 33455556664321 1
Q ss_pred -EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 558 -SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 558 -~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+.+.|...-....-|..++.. ++.. -.-.|+|..++.++.+|+|+--|- +++.....+.... .
T Consensus 170 aaVtgDe~alD~~fnwk~~~a~--rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~----v 233 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLAE--RSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE----V 233 (1416)
T ss_pred hhccCchhhhcccccCccchhh--cccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch----H
Confidence 111111111112222211110 0000 112467888888899999987764 3455555554321 3
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECC-CcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANS-DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
.+-|.+...-+.+...+-++.++-+. +|.. ..+. +.+..|...+-
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~---------ee~~------------~vk~sgk~Ggr------------- 279 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLIFVLAKGTS---------EERC------------AVKVSGKLGGR------------- 279 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEEEecCCCch---------HHhh------------hhhhccccCCc-------------
Confidence 45566655555555444444444332 2210 0000 01111111000
Q ss_pred CCCCcccCccccCCCcccccCccccccc-cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccc
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 794 (1135)
.|. +.++. .|.++ - -.-.+......+.|++++..+..+.++...|
T Consensus 280 -------------------qGg-iA~sEssGvLr---~-----------~eKyg~e~ge~~~c~cY~~~~~~l~agt~~g 325 (1416)
T KOG3617|consen 280 -------------------QGG-IACSESSGVLR---K-----------SEKYGLELGEGILCMCYGEKEIRLWAGTKEG 325 (1416)
T ss_pred -------------------cCc-ccccccccccc---C-----------CcchhhhcCCceEEEEEeccceEEEecccCC
Confidence 001 11111 11110 0 0000111346799999999999999999999
Q ss_pred eeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEE--------
Q 001157 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF-------- 866 (1135)
Q Consensus 795 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iw-------- 866 (1135)
.+.+|.-.... ......+.+|.+.+.... .+.|+.+.|.|-...+++-+-..|.+.
T Consensus 326 nv~~w~~v~~~------f~g~p~~d~w~l~~~~e~----------~g~I~~i~Wg~~k~~~avn~~~~v~ll~E~~l~~~ 389 (1416)
T KOG3617|consen 326 NVTIWLDVNKG------FQGDPTIDVWTLNGKRES----------LGKISLIRWGPIKSTAAVNTEEDVVLLGENSLTVK 389 (1416)
T ss_pred cEEEeeecCcc------ccCCCCcceEEecCchhh----------ccceEEEEeccccchhhhhhhhheeeeccCchHHH
Confidence 99999643222 222224455655443322 567888999886655554442222222
Q ss_pred ------eCCC----ceEEEEeeCC------CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe--ecCccCceE
Q 001157 867 ------NMMT----FKVMTMFMSP------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--LKGHQNRIT 928 (1135)
Q Consensus 867 ------d~~~----~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~i~ 928 (1135)
-+.+ ..+.+.+.|- .-+++.++.+. .-|+ .....+|..|++.+...+.. ........+
T Consensus 390 h~~~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~lv-vwNgr~v~~y~lq~SG~la~~~~~tF~cet~ 465 (1416)
T KOG3617|consen 390 HRGKMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQLV-VWNGRTVVTYDLQTSGSLATIQCTTFSCETT 465 (1416)
T ss_pred HhhhhHHhhhcCCceEEEeeccchhhhhhhccchhhheecc---ceEE-EEcCceEEEEEecccchhHHHhhhhhccccc
Confidence 1111 1111211111 11234444443 2232 33445788888764321111 112222333
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CCcEEEEec---cC
Q 001157 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS---KL 1004 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~vwd~---~~ 1004 (1135)
.++.... -+.+...|. |.+..+.. ...+...+....| .-+-..--|.++++.. .+.++-+|+ ..
T Consensus 466 ~la~~nq--N~ycies~~-Vfvrt~qG-tv~q~i~~seiEg--------~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e~ 533 (1416)
T KOG3617|consen 466 SLAIVNQ--NLYCIESDK-VFVRTLQG-TVRQEISLSEIEG--------VVVLLDIMGELLIVQTVSTVAKRLDVSRAEL 533 (1416)
T ss_pred hHhHhhc--ceEEeccCc-EEEEecch-hhhhhccchhccC--------ceehhhhccceeEEeehHHHHHHhhhhhhcc
Confidence 3444322 233333333 55555443 2111112222222 1122334577777754 344555555 33
Q ss_pred CcccccCCCC---CCCCCeEEEEEccCCCEEE--EEecC----CcEEEEecCCCceeeccCCCcccCccccCCCCCCcEE
Q 001157 1005 ECSRSWSPKD---ALPAPISSAIYSCDGLLVY--AGFCD----GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLV 1075 (1135)
Q Consensus 1005 ~~~~~~~~~~---~h~~~i~~~~~s~dg~~l~--s~~~d----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1135)
+.+..+...+ ...+.++.+..+..|..+. .+..+ .++.+||.++++....-... --...+-.+....+..
T Consensus 534 ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE-~ETNakkEs~ts~pvr 612 (1416)
T KOG3617|consen 534 KAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLE-PETNAKKESSTSPPVR 612 (1416)
T ss_pred cccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccC-ccccccccccCCCCce
Confidence 3222222211 1245667777666665332 22222 36999999988765332111 0011122344456777
Q ss_pred EeeCCCCCCEEEEEe
Q 001157 1076 IAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1076 ~~~sp~~~~~l~s~~ 1090 (1135)
+-|..+++++|++-.
T Consensus 613 ~fWD~~epRllv~E~ 627 (1416)
T KOG3617|consen 613 FFWDENEPRLLVVEC 627 (1416)
T ss_pred eeecCCCCcEEEEEe
Confidence 889888888888653
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=4.9e-08 Score=107.24 Aligned_cols=295 Identities=10% Similarity=0.163 Sum_probs=189.2
Q ss_pred EEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC--CCeeEEEEc
Q 001157 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWG 417 (1135)
Q Consensus 340 ~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~s 417 (1135)
--.++-.+++.++..+|.|+- +|.++.-| +.+-|+...-.... .-.|. -.|..+.||
T Consensus 18 slsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws 76 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWS 76 (1081)
T ss_pred eeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceecc
Confidence 344556779999999999985 55555444 44556543221100 11122 236677888
Q ss_pred CCCC--EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEec
Q 001157 418 PDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 494 (1135)
Q Consensus 418 pdg~--~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~ 494 (1135)
|... +-++........+|++.....-.....+.+|...|+.+.|.|.... .+++++-|..+..||+++. ..+..+.
T Consensus 77 ~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 77 PHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred cCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeee
Confidence 8543 3333334445668988765443444467899999999999998876 8999999999999999874 4566665
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce-EEecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEE
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~w 572 (1135)
.-...-..++|+... .-+.+.+..+.|++||.+.+... ..+.++...|..+.|..-- ..+.+++ .+++|+.|
T Consensus 156 ~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw 229 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFW 229 (1081)
T ss_pred cccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeee
Confidence 566667788898764 34555677788999999987654 4677787888888886532 2344443 58999999
Q ss_pred eCCCCceeEEeecccCCceeEEEEeCCCCEEEEE--ecCCeEEEE---------ECCC-CeeeEEEeCCCCCCCcCeEEE
Q 001157 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFW---------DMDN-MNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
|..............+.+|..-.+.|-|+-.+.- -.+..+.++ +..+ .+++.++.+|.. .|...-|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhh
Confidence 9875443333333333356666666655433331 112234333 3332 356777777644 3443333
Q ss_pred ec----------CCCEEEEEeCCCcEEEEECCCc
Q 001157 641 NK----------EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 s~----------~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
-. ..-.|++-+.|.++++|-+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 22 1236899999999999998654
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=2.5e-08 Score=102.81 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=114.2
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE-
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~- 426 (1135)
.++.+..+|.++ ++|++..+....++++...... .+.++.. .+..- -+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~~~---~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVPKR---PTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecccC---cceeeeeeccceEEEEe
Confidence 456677788886 7888887777777777654431 1111110 01112 2333444444444443
Q ss_pred --eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe-cCCCCCeEEE
Q 001157 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 503 (1135)
Q Consensus 427 --~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~l 503 (1135)
++...+.+|....+... .+-||-..++.++|+||++ +|+|+..|..|+|-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 45556667766654332 4558999999999999999 8999999999999887665555554 4799999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1135)
+..++ ..|+++|.|+++++||+.+++....+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98654 679999999999999999988775443
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=122.37 Aligned_cols=224 Identities=13% Similarity=0.183 Sum_probs=167.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC-CCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEA 498 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-h~~ 498 (1135)
++..+....++...-|..+.+... +..+-..|.++.=+|... +.+||+.||.|++|....++.+..++. ...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~~-----~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM-----IKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred cccCCcccCCccccceecccceeE-----eecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence 344444455565566665544322 223455678887778777 789999999999999999988887752 347
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 577 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 577 (1135)
.|+.+.|+..+ +.+..+..||.+.+|.+. .+.......|......+.|-. ..+++++.+.+ ++.+.+||..-.
T Consensus 2253 ~vtr~~f~~qG--nk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNHQG--NKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhhhhcccC--CceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence 88888886654 788899999999999876 455556677777777777765 66777765544 678999996532
Q ss_pred --ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 578 --AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 578 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
.++. ..|.. .++++++.|..+.|++||.+|.|++||++..+++..++. +. ...++++|+..|.
T Consensus 2327 ~~s~v~--~~H~~-gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVH--TCHDG-GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ccceee--eecCC-CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 2223 55555 899999999999999999999999999998887776653 22 4678999999999
Q ss_pred EEEEECCCcchheeecc
Q 001157 656 IKILANSDGVRLLRMLE 672 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~~ 672 (1135)
++||++..- .++..+.
T Consensus 2392 ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred eEEEEcccc-chhhcCc
Confidence 999999766 5555544
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=1.2e-06 Score=98.81 Aligned_cols=209 Identities=8% Similarity=-0.002 Sum_probs=126.3
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCc-EEEEEeCC---ccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMED---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
..|.+-|.+... .+.+... +.+....|+| +++ .++..+.+ ..|+++|+.+++...... ..+......|||||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 356666665443 3333323 3778899999 666 36654433 569999999887544333 44556678899999
Q ss_pred CeEEE-EcCC--CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC----cEEEEeccCCcccc
Q 001157 937 NALVS-SGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES----QISVYDSKLECSRS 1009 (1135)
Q Consensus 937 ~~l~s-~~~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~----~i~vwd~~~~~~~~ 1009 (1135)
+.|+. .+.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+...+. .|.++|+.+.....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 87654 3333 46888888776522 2222221 12355899999998885433 57778885544433
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecC---------CcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCC
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCD---------GAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHP 1080 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~d---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 1080 (1135)
+... + . ....|||||++|+..+.. ..|++.|++++.. ..+... + ......|+|
T Consensus 316 lt~~-g--~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~---------~---~~~~p~~SP 377 (419)
T PRK04043 316 VVFH-G--K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN---------G---VNQFPRFSS 377 (419)
T ss_pred CccC-C--C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC---------C---CcCCeEECC
Confidence 3221 1 1 124899999998876543 3688889988764 333211 1 122478999
Q ss_pred CCCCEEEEEecC-CcEEEEecC
Q 001157 1081 SEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1081 ~~~~~l~s~~~D-g~i~lW~~~ 1101 (1135)
||+.|+..+.+ +.-.+|-+.
T Consensus 378 -DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 378 -DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CCCEEEEEEccCCcEEEEEEe
Confidence 66766655433 443444443
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=4.7e-06 Score=86.00 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=144.1
Q ss_pred eEEEeec-CCCEEEEEe-CCe-EEEEeCCCceEEEEeeCCCCCe--eEEEEeCCCCcEEEEEeC-----CccEEEEEcc-
Q 001157 844 ACIALSK-NDSYVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR- 912 (1135)
Q Consensus 844 ~~l~~s~-dg~~la~~s-dg~-i~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasg~~-----dg~v~iwd~~- 912 (1135)
-.++.+| ++..++.+- .|+ ..+||..+++....+....+.- -.-+||+ ||++|.+.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3688999 555666666 454 8999999999988877655442 2478999 8888887543 4789999999
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeEEEEc------------------CCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSG------------------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~------------------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
+.+.+.++..|.-.-..+.+.|||+.|+.+- .+.++..-|..+|+.+.+..+.. .-|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc---
Confidence 6788889998887778899999998777652 23456666677777544333211 1122
Q ss_pred CCceeEEECCCCcEEEEEEC-C-------cEEEEeccCCcccccCCC----CCCCCCeEEEEEccCCCEEEEE-ecCCcE
Q 001157 975 VGETKVQFHNDQTHLLVVHE-S-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAG-FCDGAI 1041 (1135)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d-~-------~i~vwd~~~~~~~~~~~~----~~h~~~i~~~~~s~dg~~l~s~-~~dg~V 1041 (1135)
..+..+++.++|..++.... + -|.+++... .+..+... ..-..-|-+|+++++|.++++. -.-+++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 57899999999988877531 1 144454411 12221111 1125679999999999887654 467789
Q ss_pred EEEecCCCceeeccC
Q 001157 1042 GVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1042 ~vwd~~~~~~~~~~~ 1056 (1135)
.+||..+|+.+....
T Consensus 242 ~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 242 AVWDAATGRLLGSVP 256 (305)
T ss_pred EEEECCCCCEeeccc
Confidence 999999999987765
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.80 E-value=1.9e-06 Score=85.72 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=138.4
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCc--eEEEEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~--~~~~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
++.+.||++||+.-|..|.|-...+. ..+.+... ....=+.++||| |+.+||.+...|+|++||+...++. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 67889999999999999888766542 22233222 334467899999 9999999999999999998765433 32
Q ss_pred c-Cc------cCceEEEEEcCCC---C---eEEEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 921 K-GH------QNRITGLAFSPTL---N---ALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 921 ~-~h------~~~i~~l~~s~d~---~---~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
. ++ ...|.+|.|-+-. + .|+.-..+|.++-+-+..+ +.-.....-.+..|- ..+|.++.++|.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHPK 158 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcCC
Confidence 2 11 3457777775432 1 3555666777777765432 211111111111111 168999999999
Q ss_pred CcEEEEEE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEc---cCCCEEEEEecCCc------EEEEecCCCceeec
Q 001157 986 QTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGA------IGVFDAETLRFRCR 1054 (1135)
Q Consensus 986 g~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s---~dg~~l~s~~~dg~------V~vwd~~~~~~~~~ 1054 (1135)
.++|++++ ...-..+... ...+++-..- |..+. ++..+|+. -.+|.+-+.+...+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~-------------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKAS-------------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCEEEEeccCCCCCcccccc-------------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeec
Confidence 99988843 1110000000 1122222111 22221 12222221 23444444333322
Q ss_pred cCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc--cccCC
Q 001157 1055 IGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE--LKWGG 1109 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~--~~~~~ 1109 (1135)
.. .....+..|.-|| |+..||+...+|+|.||++.+-. +.|..
T Consensus 225 ~~-----------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 225 QG-----------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cc-----------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11 2236788999999 89999999999999999998644 55653
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4e-09 Score=117.64 Aligned_cols=215 Identities=13% Similarity=0.194 Sum_probs=159.3
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEE-cCCC-cEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDK-MIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~-~i~i 481 (1135)
+..|....+|++||-+.+.|+.|+..|.|+++++.+|.... ..++|..+|+.+.=+.||.. +++. +... ...+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 66788999999999999999999999999999999998766 67789999999999999984 4443 3333 5789
Q ss_pred EEcCC-CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cC---CCCeEEEEEEcCCCCEE
Q 001157 482 WDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DA---PGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 482 wd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l 556 (1135)
|++.+ +...++|.+ -.++.|+... +.-+.|..-....+||+.+.....++ .. ....-+++.|+|+.+.+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99864 555555543 3456676543 44455555577889999998876652 22 12234778899999888
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+-- | .+||.+..+.++.|..... .+ .-.|+|.|..++.-++ |||+++.+.+..++.-.. .
T Consensus 1246 lnd-------G--vLWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c 1305 (1516)
T KOG1832|consen 1246 LND-------G--VLWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----C 1305 (1516)
T ss_pred eeC-------c--eeeeeccHHHHhhhhhhee-cc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----e
Confidence 753 2 4799998888877766542 22 2459999999998764 899999988877764422 5
Q ss_pred eEEEecCCCEEEE
Q 001157 637 RLRFNKEGSLLAV 649 (1135)
Q Consensus 637 ~~~~s~~~~~l~~ 649 (1135)
.+.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6778887876654
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3e-08 Score=104.96 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=153.5
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC-------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEE
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iw 909 (1135)
| ...|..++--.+.+-+++++ |.+|++|.+.. ..+..++..|+.+|..+.|-. +.+++++ -||-|.+|
T Consensus 734 H-~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~giHlW 809 (1034)
T KOG4190|consen 734 H-QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGGIHLW 809 (1034)
T ss_pred c-HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCcceee
Confidence 7 88888887666777777777 99999999863 347778889999999999999 7777765 48889999
Q ss_pred EcccceEeEeec--CccCceEEEEEcC--CCCe-EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC
Q 001157 910 NVRVDEVKTKLK--GHQNRITGLAFSP--TLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 910 d~~~~~~~~~l~--~h~~~i~~l~~s~--d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
|.--+.++.... ...+.+..+..-+ +... ++-++...+|+++|...++-.....+....+.. .-+.+++..|
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeEEEecc
Confidence 988777665331 1112233333323 3333 344478899999999988765544444333333 5678999999
Q ss_pred CCcEEEEE-ECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE-EecCCCceeeccCCC
Q 001157 985 DQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV-FDAETLRFRCRIGPS 1058 (1135)
Q Consensus 985 dg~~l~~~-~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~v-wd~~~~~~~~~~~~~ 1058 (1135)
.|++++++ ++|.|.+.|. +++.+-.|++. .-....++ .|..+.|+....|.++.| |...+|.......++
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999994 8999999999 77778888765 22333333 366778888888999999 999998877776643
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=7.6e-06 Score=93.20 Aligned_cols=306 Identities=10% Similarity=0.040 Sum_probs=169.1
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC----------eEE-EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----------WCT-MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----------~v~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.+|.+.-+|.++++.+........ .+. .+.. ++..++.++ .++.++.+|.++|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 4666777778888888877777665543321 000 0111 344555554 3678999999999988
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCC---CcCeEEEecCCCEEEEEeCCCcEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP---ASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.+...... ........ +..++.+..++.++.+|..+|+.+-......... ...+... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 87765432 11111222 4567778889999999999999988776432100 0011111 133567778899999
Q ss_pred EEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCc
Q 001157 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
.+|..+|+. .......... +.
T Consensus 219 a~d~~~G~~-~W~~~~~~~~----------------------------------------------------------~~ 239 (394)
T PRK11138 219 AVLMEQGQL-IWQQRISQPT----------------------------------------------------------GA 239 (394)
T ss_pred EEEccCChh-hheeccccCC----------------------------------------------------------Cc
Confidence 999988833 2221100000 00
Q ss_pred cccccccccc-cccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccc
Q 001157 738 PRVAEDVDKI-KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 738 ~~~~~~~~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
..+ +++++. ..++ + .+..+++++.+|.+..+|....+
T Consensus 240 -------~~~~~~~~~~------------------~sP~----v--~~~~vy~~~~~g~l~ald~~tG~----------- 277 (394)
T PRK11138 240 -------TEIDRLVDVD------------------TTPV----V--VGGVVYALAYNGNLVALDLRSGQ----------- 277 (394)
T ss_pred -------cchhcccccC------------------CCcE----E--ECCEEEEEEcCCeEEEEECCCCC-----------
Confidence 000 000000 0000 1 12235555556666655543211
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCC
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDN 894 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~ 894 (1135)
.+|....+ . ...+.. ++..+..++ +|.+..+|..+++.+....... ....+..+. +
T Consensus 278 --~~W~~~~~--------------~-~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~- 335 (394)
T PRK11138 278 --IVWKREYG--------------S-VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N- 335 (394)
T ss_pred --EEEeecCC--------------C-ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-
Confidence 12221110 0 111222 344555555 8999999999998766543211 122333333 2
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCccCceEE-EEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~-l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
..|+.++.||.|+..|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 336 g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 336 GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 46778899999999999999988877544333332 222 2447888899998887754
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.73 E-value=1.2e-05 Score=91.71 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=114.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCC--CeE-----EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~--~v~-----~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 541 (1135)
.++.++.++.+.-+|..+|+.+.+..-... ... .+.-.|.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 577778889999999999998876542210 000 0000111123567788899999999999998887766543
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc----eeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
....+.... + ..++.+. .++.++.+|..+|+.+..+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222221 3 4455443 36789999999999988776432100 011111 1345777788999999999
Q ss_pred CCCeeeEEEeCCCCC--CC---cCeEEEec--CCCEEEEEeCCCcEEEEECCCcc
Q 001157 618 DNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~--~~---v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.+++.+......... .. ...+.-+| .+..++.++.+|.+..+|..+|+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 999876654321110 00 01111122 24567777788999999998883
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=2.5e-07 Score=91.46 Aligned_cols=248 Identities=16% Similarity=0.250 Sum_probs=165.4
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeeeEeecCC------------CCeeEEEEecCCCceEEEE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~d~~~~~l~s 472 (1135)
...-|+++.|...|.||++|...|.|.+|.-+... ..+...++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44569999999999999999999999999865433 122233566664 3578889988776557777
Q ss_pred EcCCCcEEEEEcCCCee-------------------------------------E-----EEe-cCCCCCeEEEEeccCC
Q 001157 473 CGDDKMIKVWDVVAGRK-------------------------------------Q-----YTF-EGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~-------------------------------------~-----~~l-~~h~~~v~~l~~~~~~ 509 (1135)
.+.|++|++|.+..... + +.. ..|...|+++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999998754310 0 001 2466667788876543
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCceE---EecCCC-----CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPG-----NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~-----~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
..+++ +.|=.|.+|+++....-. .+..+. .-|++..|+|....++.-+. ..|.|++-|++...+..
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 55555 467889999887544332 222232 25788899997654443222 36789999998432210
Q ss_pred ----E------------eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC-eeeEEEeCCCC----------CCC
Q 001157 582 ----T------------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGG----------LPA 634 (1135)
Q Consensus 582 ----~------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~----------~~~ 634 (1135)
. +.+.. ..|..+.|+++|+++++-+ --+|++||++.. .++.+++.|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 1 11111 1577799999999998864 358999999864 57777754421 111
Q ss_pred c---CeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 635 S---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 635 v---~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
| ..+.|+.|.+.+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357788899999999998888887643
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=1.9e-06 Score=83.76 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=126.2
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC--CeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
+..++.|.++++.++..+.... .-|.. .+.++++++|++++++.++...|..|.++.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 4456778888888887554321 11333 388999999999999999999999999987
Q ss_pred CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-----EecCCCCCeEEEEeccCCCccEE
Q 001157 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
..............+.-.+..|+.... .+|++..||++.|||++.-.... +-..|.+.+..+.|++.+.-.+|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 554332223334455567889998888 79999999999999998643322 22358999999999987766778
Q ss_pred EEEEcCCeEEEEeCCCCCceEEecCCC--------CeEEEEEEcCCCCEEEEEe
Q 001157 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~ 560 (1135)
+..-.-+.+.+-|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 777778899999999887655433222 2366666766666655543
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.3e-05 Score=82.79 Aligned_cols=234 Identities=13% Similarity=0.159 Sum_probs=154.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCC-cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
....++.+|+....++.+-.-| ...+||..+++.+.... .-...-|.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4567888996666888887776 46899999998764310 0111124455 4899999999997
Q ss_pred e-----CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc----------------CCCcEEEEEcC
Q 001157 427 F-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDVV 485 (1135)
Q Consensus 427 ~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~----------------~d~~i~iwd~~ 485 (1135)
- ..|.|-|||... ......++..|.-.-..+.+.|||+.+.++-|+ .+..+..-|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 357899999983 234445777777777889999999843333333 12356677888
Q ss_pred CCeeEEE--e--cCCCCCeEEEEeccCCCccEEEEEEcCCe-------EEEEeCCCCCceEEecC-------CCCeEEEE
Q 001157 486 AGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDYDA-------PGNWCTMM 547 (1135)
Q Consensus 486 ~~~~~~~--l--~~h~~~v~~l~~~~~~~~~~l~s~s~dg~-------i~~wd~~~~~~~~~~~~-------~~~~v~~~ 547 (1135)
+|+.+.. + .-|...|..+++..++ ..++..-..|. |-+++. ++....+.. -.+.+-+|
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEE
Confidence 8988766 4 3377889999987653 44444332222 333332 222222222 24588999
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
++++++..+++.+. ..+.+.+||..+++.+....-. .+..++-.+++ ++++.+ .|.+
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccE
Confidence 99999999987764 5778999999999988776654 45666666666 555544 3443
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.71 E-value=2.1e-07 Score=96.15 Aligned_cols=157 Identities=11% Similarity=0.064 Sum_probs=105.9
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-EC---CcEEEEecc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE---SQISVYDSK 1003 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d---~~i~vwd~~ 1003 (1135)
..+..+++++++|.+..+....++++....+ ...++...... ..-+.+.|-.+.....++ .- ..+.+|...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 3445677778888777777766777665443 11122222211 123455555555554442 23 345555542
Q ss_pred CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCC
Q 001157 1004 LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEP 1083 (1135)
Q Consensus 1004 ~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 1083 (1135)
..+ ....-||-+.++.+++|||+++++++..|..|+|-.+..--.+..+ ..||...|..++..+ +
T Consensus 141 ~~~---~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------clGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 141 SGR---CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------CLGHKEFVSTISLTD--N 205 (390)
T ss_pred ccC---cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----------ccccHhheeeeeecc--C
Confidence 122 2233577999999999999999999999999999888765444333 358999999998876 5
Q ss_pred CEEEEEecCCcEEEEecCCCc
Q 001157 1084 NQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1084 ~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+.|+||+.|++|++||+.++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 679999999999999999988
No 301
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.70 E-value=0.0019 Score=75.28 Aligned_cols=286 Identities=11% Similarity=0.095 Sum_probs=147.4
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccC--CCCCCCCCCCeeEEEeecC-
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND--INESKPTEESAACIALSKN- 851 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~~v~~l~~s~d- 851 (1135)
|.-..+-.|..+|+++.+||.+.-|.+.. .+|..-... .-| ..++.--.|+..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~lG----t~P~~Lr~f~sk~ 641 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVTLG----TQPISLRTFSSKS 641 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccccC----CCCcEEEEEeeCC
Confidence 34445556688899999999988876543 333222111 111 345555556543
Q ss_pred CCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeE-EEEeCC-CCcEEEEEeCCccEEEEEcccceE--eEeecCccCce
Q 001157 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRI 927 (1135)
Q Consensus 852 g~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i 927 (1135)
++.+.+++|.-..+|... +++..+--. -..+.. ..|+.+ ....|+++. .+.+++.-++.-+. ++++.-| ...
T Consensus 642 ~t~vfa~sdrP~viY~~n-~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~p 717 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSN-GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESP 717 (1096)
T ss_pred ceEEEEeCCCCEEEEecC-CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CCh
Confidence 345555566555555432 333222110 111111 122221 223444443 33566655543221 1222222 223
Q ss_pred EEEEEcCCCCeEEEEc-----------CC---CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC-CcEEEEE
Q 001157 928 TGLAFSPTLNALVSSG-----------AD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVV 992 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~-----------~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~~ 992 (1135)
..+++.+...++++.+ .. ..++++|-.+.+..........+. ...+..+.|..| ++++++|
T Consensus 718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~----~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET----ALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce----eeeeeeeeecCCCceEEEEE
Confidence 4455555333333222 11 247777777766443322222211 135666779888 7888875
Q ss_pred E-----------CCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcc
Q 001157 993 H-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1060 (1135)
Q Consensus 993 ~-----------d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~ 1060 (1135)
. .|.|.||.. +.+.+...... ...+.+.++.. -+|++||.-+ ..|++|+..+.+.++.-.
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~-fngkllA~In--~~vrLye~t~~~eLr~e~---- 865 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVE-FNGKLLAGIN--QSVRLYEWTTERELRIEC---- 865 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhh-hCCeEEEecC--cEEEEEEccccceehhhh----
Confidence 2 367888888 43444333211 11333443331 4788877654 589999998885554321
Q ss_pred cCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001157 1061 IPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
.+...++.+.-.- .++.+++|..-+.+.+-.....|..|.
T Consensus 866 -------~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 866 -------NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred -------cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceE
Confidence 3334444444444 678899999989888887776664443
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=3.7e-06 Score=81.90 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=153.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
...+||.|+..|...+|...+.+.... ....|...|+-+.=.-|.+. -+..++.|.++++.++.-+.....+ |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--ecc
Confidence 345899999999999999987654321 22334444433322223332 4667888999999998755433332 333
Q ss_pred --CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 499 --PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 499 --~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+.++++++++ .++++.+....|..|.++...... ........-.+..|+.....++++.. |+.+.|||
T Consensus 158 ~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~D 231 (344)
T KOG4532|consen 158 NLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYD 231 (344)
T ss_pred ccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEE
Confidence 37777887655 899999999999999988765533 22333445567889999999999874 88899999
Q ss_pred CCCCcee----EEeecccCCceeEEEEeCCC--CEEEEEecCCeEEEEECCCCeeeEEEeCCCCC------CCcCeEEEe
Q 001157 574 ESEGAIK----RTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFN 641 (1135)
Q Consensus 574 ~~~~~~~----~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s 641 (1135)
++..... ..-+.|+.+.++.+.|++.| ..|+..-.-+.+.+-|++++...+.+...... ..|....|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 9864432 23345566689999999866 34554545678999999998876666433221 235666677
Q ss_pred cCCCEEEEEeCCCcEEEEECC
Q 001157 642 KEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.++..+.+.+.+ .+.=|++.
T Consensus 312 ~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcccccccch-hhheeecc
Confidence 766666555544 33344443
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-06 Score=91.34 Aligned_cols=214 Identities=10% Similarity=0.158 Sum_probs=146.2
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC--C-eeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEE
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~w 526 (1135)
-|...|+.+.-+. .+ ++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+.++ .++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tk-a~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeeh-hh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc--eeEeeccCcccceeEE
Confidence 3777788776654 34 899999999999998432 1 2345667888999999887654 78888777 9999999
Q ss_pred eCCCCCceEEec--CCCCeEEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEEEEeCCCCE
Q 001157 527 LYDYLGSRVDYD--APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
|+++......+. ...+.+.. ..++. -.-+++.+. -.++.+.++|-.... +..-+.+.+-.+|.++.+.+.+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 988755442222 11222211 12222 112233322 247789999976443 444555555558999999999999
Q ss_pred EEEEecCCeEEEEECCC------CeeeEEEeC-------CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 603 FLAAGDEFQIKFWDMDN------MNMLTTVDA-------DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
+++....|.|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|++++..+| ++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 111111111 112235689999999999999999999999999999 6666
Q ss_pred eccC
Q 001157 670 MLEG 673 (1135)
Q Consensus 670 ~~~~ 673 (1135)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 6543
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=6.6e-07 Score=88.50 Aligned_cols=257 Identities=13% Similarity=0.176 Sum_probs=164.2
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc-cccc--ccceeecccccccccccccccccCCCeeEEEEcCCCC-
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAH--KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL- 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~- 421 (1135)
.+-|+++.|...|. +|++|...|.|.++.-.... +... ..|...+.+-... .--.-...|..+.|..++.
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYL-----kSleieEKin~I~w~~~t~r 99 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYL-----KSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhh-----hhccHHHHhhheeeecCCCc
Confidence 45799999999997 79999888999999755432 1000 0111111100000 0001234688899987654
Q ss_pred -EEEEEeCCCeEEEEEcCCCC-------------------c------e--------------eee-eEeecCCCCeeEEE
Q 001157 422 -MLGVAFSKHIVHLYTYNPTG-------------------E------L--------------RQH-LEIDAHVGGVNDIA 460 (1135)
Q Consensus 422 -~la~~~~dg~i~iwd~~~~~-------------------~------~--------------~~~-~~~~~h~~~v~~l~ 460 (1135)
.++..+.|.+|++|.+.... . + ... ..-..|..-|.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 45666699999999875420 0 0 000 01246777789999
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCC-----CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~-----~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~ 532 (1135)
|+.|.+ .++++ +|-.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++...
T Consensus 180 ~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 180 FNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred ecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhh
Confidence 999988 56655 488999999864322 22334443 4577888988754 677777889999999997321
Q ss_pred -----c-eE--Ee--------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEeecccC-------
Q 001157 533 -----S-RV--DY--------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK------- 588 (1135)
Q Consensus 533 -----~-~~--~~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~------- 588 (1135)
. .. .+ ..-...|..+.|+++|+++++-. -.++.+||.+.. .++.+..-|.+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~d 330 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELND 330 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHHh
Confidence 1 11 11 11233788999999999999864 567999998853 46666644321
Q ss_pred ----Cce---eEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 589 ----RSL---GVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 589 ----~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
..| ..+.|+.|...+++|+..+..-+|-.
T Consensus 331 ~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 331 VYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 23778888899999987777666653
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=3.7e-05 Score=81.28 Aligned_cols=219 Identities=18% Similarity=0.180 Sum_probs=142.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe-cCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 413 ~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
+++|.+ ++.++++--..+.|..|+..++.... +.. . ....+++. +++. ++.+..+ .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----Eec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 67777777778999999998864321 221 1 26778888 6654 4555544 4556699988654
Q ss_pred EEecC-----CCCCeEEEEeccCCCccEEEEEEcC--------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 491 ~~l~~-----h~~~v~~l~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
..... .....+.+++.+++ .+.++.... |.|..++.. ++ .......-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 43322 34567788887754 666666543 556667666 33 332322344678999999999887
Q ss_pred EEeeCCCCCceEEEEeCCCCc--e--eEEeecccC--CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEGA--I--KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.+.. ..+.|..+++.... . .+.+..... +....+++..+|+..++....+.|.+++.. ++.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6542 46778888885322 1 122211111 136789999999988887789999999998 888888887633
Q ss_pred CCCcCeEEEe-cCCCEEEEEe
Q 001157 632 LPASPRLRFN-KEGSLLAVTT 651 (1135)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~ 651 (1135)
.+++++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68899994 6666666544
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=7e-05 Score=79.17 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=143.7
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc-CCCCEEEEEeCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~la~~~~d 429 (1135)
++.|.+....|+++....+.|..|+..+++.... .......+++. +++.+ +.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~g~l-~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPGPNGMAFDRPDGRL-YVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSSEEEEEEECTTSEE-EEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCCCceEEEEccCCEE-EEEEcC
Confidence 6789984445888887889999999988764320 11126677777 66554 455455
Q ss_pred CeEEEEEcCCCCceeeeeEee--c-CCCCeeEEEEecCCCceEEEEEcCC--------CcEEEEEcCCCeeEEEecCCCC
Q 001157 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~l~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
+ +.++|..+++.. ...... . .....+.+++.++|. +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 5 556698887543 222332 1 345688999999998 56665433 457777766 5544333 3355
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc----eE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
..+.|+|+|++. .++++-+..+.|..++++.... .. .+....+....+++..+|+..++.. ..+.|.+
T Consensus 135 ~pNGi~~s~dg~-~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~ 209 (246)
T PF08450_consen 135 FPNGIAFSPDGK-TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVV 209 (246)
T ss_dssp SEEEEEEETTSS-EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEE
T ss_pred cccceEECCcch-heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEE
Confidence 678999988752 3445777889999999875433 11 2222233588999999998777654 3678999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEe
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1135)
+|.. |+.+..+..... .+++++|. ++.+.|+..+
T Consensus 210 ~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred ECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 9987 998888887644 78889994 6666666544
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=5.4e-06 Score=87.47 Aligned_cols=225 Identities=16% Similarity=0.163 Sum_probs=135.0
Q ss_pred CCeEEEEeCCCceEEEEeeCCC--CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 860 GGKVSLFNMMTFKVMTMFMSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
+|+|..||..+|+.+....-.. ....+..+ + ++..+++++.++.|+.||..+|+.+.++.. .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 5889999999999998876411 22222233 2 345666778999999999999999887764 222211112 2345
Q ss_pred eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CCcEEEEec-cCCcccccCCCCC
Q 001157 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS-KLECSRSWSPKDA 1015 (1135)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~vwd~-~~~~~~~~~~~~~ 1015 (1135)
.++.++.|+.|+.+|..+|+..-.......... ..........++..++++. ++.|..+|+ +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 566666888999999999886443211111111 0111222222366777754 899999998 6666544433221
Q ss_pred C-CCC------eEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1016 L-PAP------ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1016 h-~~~------i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
. ... +.+-.+..++ .++.++.++.+.-+|+.+|+.+-..... + +.. .... .+..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~---------~----~~~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPIS---------G----IYS-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS--------------ECE-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCC---------C----ccC-Ccee-eCCEEEE
Confidence 1 111 2222233345 6777777886444499999865322100 1 111 1223 5677777
Q ss_pred EecCCcEEEEecCCCccccC
Q 001157 1089 GMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1089 ~~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
++.|+.|..||+.+++..|+
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998885
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=8e-07 Score=86.04 Aligned_cols=209 Identities=13% Similarity=0.197 Sum_probs=128.2
Q ss_pred eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC
Q 001157 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~ 428 (1135)
|+.+.|+.+- .|+++..++.+......++.+... |+-+.... +...+..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence 6777777765 577787788777776665544321 11111111 11123356666566666667889999999
Q ss_pred CCeEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEc-----CCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
||.+.+.+.+.-..+. ..... |.+ --+.++...+. .+.++. .-+..++|+++..+.+..-.-....|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999977521111 11111 211 12223334444 333332 1224456665533222111112234999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCC
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
++-+|... +.+++|+.||.+-+||++...... .+..|..+++.+-|+|. +..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99998865 788999999999999999875443 56678889999999994 567888874 77899999764
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.59 E-value=1.5e-05 Score=84.02 Aligned_cols=221 Identities=14% Similarity=0.110 Sum_probs=139.3
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.+|+|..||..+|+.+... .+..-.....+. ..+++. .+++++.++.|..||..+|+.+.++.. ...+.....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-- 73 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY-DLGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-- 73 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE-ECSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--
T ss_pred CCCEEEEEECCCCCEEEEE-ECCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee--
Confidence 3688999999888876643 221111122211 333455 577778999999999999999887764 222211111
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCC---CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
.++..++.++.++.++.+|..+++..... .... ..........+++.++++.. ++.|..+|+++|+.+..+
T Consensus 74 -~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 74 -VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp -EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEE
T ss_pred -ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEe
Confidence 12256777778899999999999988773 3221 11222233334777777753 678999999999998888
Q ss_pred ecccCCc---------eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 584 SGFRKRS---------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 584 ~~~~~~~---------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
....... +..-....++ .++.++.++.+..+|+.+++.+.... .. .+.. ....++..|++++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 7643211 1122222234 77777777754444999999664333 11 2222 1456778888888999
Q ss_pred cEEEEECCCcch
Q 001157 655 GIKILANSDGVR 666 (1135)
Q Consensus 655 ~v~iw~~~~~~~ 666 (1135)
.|..||+.+++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999999943
No 310
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=6.6e-05 Score=73.15 Aligned_cols=143 Identities=8% Similarity=0.035 Sum_probs=92.6
Q ss_pred eecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 001157 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH 433 (1135)
Q Consensus 354 fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~ 433 (1135)
.-+|.+++++.|+..+.+.--|..+|+..-. . --...|-+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 3456677899999999999999998876532 1 112233332222 578899999999999
Q ss_pred EEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccE
Q 001157 434 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF 513 (1135)
Q Consensus 434 iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~ 513 (1135)
+.+.++|........+..- .+ .....+++. +|..|+.|++.+..|..+..++.+.+-..+...+-++.+- + ..
T Consensus 77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~s 149 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-GS 149 (354)
T ss_pred EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-ce
Confidence 9999999776543332211 11 223456777 8999999999999999999999887633322223333332 2 23
Q ss_pred EEEEEcCCeEE
Q 001157 514 IFSTAIDGKIK 524 (1135)
Q Consensus 514 l~s~s~dg~i~ 524 (1135)
|..+...|.+.
T Consensus 150 ly~a~t~G~vl 160 (354)
T KOG4649|consen 150 LYAAITAGAVL 160 (354)
T ss_pred EEEEeccceEE
Confidence 44444444443
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=3.6e-06 Score=81.66 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=72.2
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE-eEeecCccCceEEEEEcCC-CCe
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPT-LNA 938 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d-~~~ 938 (1135)
+..+.|+++..+.+..-......|++++-+|.-.+++++|+.||.+.+||...... ...+..|..+|..+-|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34555665543332222222345999999996677889999999999999987743 3457899999999999986 478
Q ss_pred EEEEcCCCcEEEEeCCC
Q 001157 939 LVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 939 l~s~~~D~~i~iWd~~~ 955 (1135)
|.+++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999886
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.56 E-value=2e-05 Score=89.03 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=99.7
Q ss_pred eecCCCEEEEEeCCeEEEEeCCC-----ceEEEEeeCCCCCeeEEEEeCCCCcEEEE-EeCCccEEEEEcccceE-----
Q 001157 848 LSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV----- 916 (1135)
Q Consensus 848 ~s~dg~~la~~sdg~i~iwd~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~----- 916 (1135)
+.++|++... .++.|.+.|..+ .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457887665 467899999988 45555555 345678999999 6666554 55689999999987552
Q ss_pred -------eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC------cccccceeeecC-----CCCCCCCCCce
Q 001157 917 -------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK------WEKLKSRFIQAP-----AGRQSPLVGET 978 (1135)
Q Consensus 917 -------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~------~~~~~~~~~~~~-----~~~~~~~~~v~ 978 (1135)
..+..-- ..-...+|.++|....|..-|..|..||+.+ |+... .++... .||. ....
T Consensus 361 ~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~-~v~~k~dV~y~pgh~---~~~~ 435 (635)
T PRK02888 361 IKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVD-PIVQKLDVHYQPGHN---HASM 435 (635)
T ss_pred CCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCC-cceecccCCCcccee---eecC
Confidence 3333322 2234678999999889999999999999986 22211 122222 2222 1111
Q ss_pred eEEECCCCcEEEEEE----CCc----------EEEEeccCCccccc
Q 001157 979 KVQFHNDQTHLLVVH----ESQ----------ISVYDSKLECSRSW 1010 (1135)
Q Consensus 979 ~~~fspdg~~l~~~~----d~~----------i~vwd~~~~~~~~~ 1010 (1135)
.=.-.|||++|++.+ |.. -.+.|+++..+..+
T Consensus 436 g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv 481 (635)
T PRK02888 436 GETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLV 481 (635)
T ss_pred CCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEE
Confidence 122378999999842 322 35677766655544
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=4.6e-05 Score=86.26 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=72.0
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceE------------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCcc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 905 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~ 905 (1135)
......+++||||+++++++ +.+|.|+|+.+.+. ..+..- ...-...+|++ +|....+..-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 44556799999999999987 78999999987553 222222 22345678998 7888888999999
Q ss_pred EEEEEccc----------ceEeEeecCccCceE-----EEEEcCCCCeEEEEc
Q 001157 906 VQIYNVRV----------DEVKTKLKGHQNRIT-----GLAFSPTLNALVSSG 943 (1135)
Q Consensus 906 v~iwd~~~----------~~~~~~l~~h~~~i~-----~l~~s~d~~~l~s~~ 943 (1135)
|..||+.+ ...+.++.-|-.+.. +=.-.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999987 345555554433221 112368999999864
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.00039 Score=67.94 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=92.6
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
.+++.||..+.+.--|..+++....... +..+.+-+.- -|++++.++. .+.+++.+..+|.....+.....-.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhhhcc
Confidence 5666777777777777766665543322 2233332222 4778888875 66799999999988888776543222
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.....+++..+++|+.|++.+..|.++..++.+.+..+.. ..+-++.|-...|..+...|.+.--+
T Consensus 98 -~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 98 -RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred -ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEEEEc
Confidence 3557889999999999999999999999999887766542 33445556223344444555544433
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=3.2e-07 Score=92.31 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=124.0
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCe
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~ 431 (1135)
++||-+-.-+-++.+.+-.|-+-|+++|..-. + ..++.|.++.|...+.++..|+.+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 37765432222344457788999999885432 2 26778999999999999999999999
Q ss_pred EEEEEcCCCCc--eeeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcCCCee---EEEecCCCCCeEEEEe
Q 001157 432 VHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 432 i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~l~~h~~~v~~l~~ 505 (1135)
|..+|++.+.. ..+...+ -|...|+++..-. +++ +|++.+.+|+|++||++--++ +.++.||...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999987521 1111122 4889999998877 555 788899999999999987666 8889999766666655
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1135)
+-++....+++++.|...|+|.++.+....+++..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555578999999999999999988877766544
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.6e-05 Score=80.70 Aligned_cols=249 Identities=12% Similarity=0.147 Sum_probs=149.8
Q ss_pred cccccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
++.+|...|..++|||... ++..++.+..|.|.|+++...+. .+..| ..+++++|.-|..+ +|+.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999888 78889999999999999976554 44556 68999999999877 8999999999999
Q ss_pred EEcCCCee-EEEecC--CCCCeEEEEeccCC----CccEEEEEEcCCeEEEEeCCCCCc--eEEecCC-CCeEEEEEEcC
Q 001157 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAP-GNWCTMMAYSA 551 (1135)
Q Consensus 482 wd~~~~~~-~~~l~~--h~~~v~~l~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~-~~~v~~~~~s~ 551 (1135)
+|++..+- +..+.+ ...+|..++..+.+ .|.+++..+.+ +..|++..... ....... .+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986442 223322 23445554432211 12344444433 34565433222 2222222 34555667777
Q ss_pred CCCEEEEEeeCCCCCceEE----EEeCCCCceeEEee-cc---cCC---ceeEEEEeCCCCEEEE-EecCCeEEEEECCC
Q 001157 552 DGTRLFSCGTSKEGESHLV----EWNESEGAIKRTYS-GF---RKR---SLGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~-~~---~~~---~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
..+.++....+..+-.+++ -.|-.+|.++..-+ ++ ... .-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665543211111111 11223343332211 11 000 0111223455566666 55778999999999
Q ss_pred CeeeEEEeCCCCCCCcCeEEEec-C-CCEEEEEeCCCcEEEEECC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~v~iw~~~ 662 (1135)
++.++++... .+|..++... + +.+|++-. |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2566665543 3 34666554 5588888654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=2e-05 Score=93.02 Aligned_cols=279 Identities=6% Similarity=0.069 Sum_probs=161.9
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
.+..|.++.|-.++..++.+...|.|.+-|..+... -. .+. - ...|.+++|||
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~----------------------ei---vg~-v-d~GI~aaswS~ 119 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL----------------------EI---VGN-V-DNGISAASWSP 119 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce----------------------ee---eee-c-cCceEEEeecC
Confidence 346899999999999999999999988875433211 11 010 1 67899999999
Q ss_pred CCCEEEEEeC-CeEEEEeCCCceEEEEeeCC-----CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-EeEeecCc
Q 001157 851 NDSYVMSASG-GKVSLFNMMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGH 923 (1135)
Q Consensus 851 dg~~la~~sd-g~i~iwd~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h 923 (1135)
|+..++..+. +++.+. ..+..++..-.-+ .+..-.+-|-. ....+ -| ..|.....+....+ .+....-|
T Consensus 120 Dee~l~liT~~~tll~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~ 195 (1265)
T KOG1920|consen 120 DEELLALITGRQTLLFM-TKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD 195 (1265)
T ss_pred CCcEEEEEeCCcEEEEE-eccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc
Confidence 9999999985 555443 3334333222111 11222222322 11000 01 11111111110000 00001112
Q ss_pred cCceEEEEEcCCCCeEEEE-----cCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE----EC
Q 001157 924 QNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV----HE 994 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~----~d 994 (1135)
+.=+.|.|--||+++|+. .....|++||-+ |..... -.... .--.+++|-|.|..+++- +|
T Consensus 196 -~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~--se~~~------~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 196 -DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST--SEPVE------GLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred -cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc--cCccc------ccccceeecCCCCeEeeeeecCCC
Confidence 223568999999998873 233789999988 331110 00111 233689999999999982 46
Q ss_pred CcEEEEeccCCcccccCCCCCCCC-CeEEEEEccCCCEEEE---EecCCcEEEEecCCCceeeccCCCcccCccccCCCC
Q 001157 995 SQISVYDSKLECSRSWSPKDALPA-PISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1070 (1135)
Q Consensus 995 ~~i~vwd~~~~~~~~~~~~~~h~~-~i~~~~~s~dg~~l~s---~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1135)
+.|.+|..+|-....+.....-.. +|..++|+.++..||+ ..+...|++|-+.+..--..-. -.+|..
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~------ 337 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK------ 337 (1265)
T ss_pred CcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc------
Confidence 789999987766665544333333 4999999999999998 4555559999988754322111 011111
Q ss_pred CCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
. -+.|+|-.+..|..-..+|...+.++.
T Consensus 338 ~---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 338 A---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred c---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 1 177888666666666677776666553
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=0.00039 Score=82.58 Aligned_cols=274 Identities=14% Similarity=0.134 Sum_probs=149.9
Q ss_pred ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhee
Q 001157 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
.|.++.|..+.+.++.+...|.|.+-|..+......-... ..|.+++|+||++.++..+..+++.+-.-.= ..+.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f--~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDF--EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccc--cchh
Confidence 6888999999999999999999999988776543332222 3589999999999999999888887654311 1111
Q ss_pred eccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccc
Q 001157 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 749 (1135)
.-.-+.. ..+.++++-.++.+.-.-
T Consensus 145 E~~L~~d-------------------------------------------------------~~~~sk~v~VGwGrkeTq 169 (1265)
T KOG1920|consen 145 EKPLDAD-------------------------------------------------------DERKSKFVNVGWGRKETQ 169 (1265)
T ss_pred ccccccc-------------------------------------------------------cccccccceeccccccee
Confidence 0000000 001111111111110000
Q ss_pred cccCcccCCCceeEE---EcCCCCCCCceEEEEEeCCcceeeee-----cccceeEEEeecccCCCCCCcccccccceec
Q 001157 750 WRIPDISDPSQIKAL---RLPDSIAASKVVRLIYTNSGLSLLAL-----ASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
+.-..++.....+.. .++.....+.=+.+.|--||+++++. .+...+++||-.
T Consensus 170 frgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE------------------- 230 (1265)
T KOG1920|consen 170 FRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE------------------- 230 (1265)
T ss_pred eecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-------------------
Confidence 100000000000000 00000122334568899999988873 223678888643
Q ss_pred cCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe----CCeEEEEeCCCc---eEEEEeeCCCCCeeEEEEeCCCC
Q 001157 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GGKVSLFNMMTF---KVMTMFMSPPPAATFLAFHPQDN 894 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~~ 894 (1135)
|.+.....+. .+.=.+++|-|.|..+|+-. ++.|.+|.-+.. .....+.....+|..++|+. ++
T Consensus 231 ----g~Lns~se~~----~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~s 301 (1265)
T KOG1920|consen 231 ----GALNSTSEPV----EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NS 301 (1265)
T ss_pred ----chhhcccCcc----cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CC
Confidence 1111111111 22334799999999999873 567999986532 22222333334589999999 89
Q ss_pred cEEEE---EeCCccEEEEEcccceE--eEeecCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeC
Q 001157 895 NIIAI---GMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSI 953 (1135)
Q Consensus 895 ~~las---g~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~ 953 (1135)
.+||+ ......|++|-+.+..- .+.+.-..... +.|+|-.. .|..-..+|...++++
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 99988 44455699998876542 22233222222 78888542 2333335555555544
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.46 E-value=5.4e-05 Score=84.45 Aligned_cols=266 Identities=15% Similarity=0.210 Sum_probs=146.9
Q ss_pred ecCCCeEEEEE--------eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 355 spdg~~lla~g--------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
|||++.+|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888655522 224578889998876443 22225678899999999999998
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeec-------C---------CCCeeEEEEecCCCceEEEEEc-CCCcE----------
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKMI---------- 479 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~d~~~~~l~s~~-~d~~i---------- 479 (1135)
. ++.|.+++..++...+. +..| - -+.-..+.|||||++ |+... ++..|
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 5 57799998877643321 2222 0 112357889999994 44332 22222
Q ss_pred -------------------------EEEEcCCCeeEE-E-e---cCCCCCeEEEEeccCCCccEEEEE--EcCC---eEE
Q 001157 480 -------------------------KVWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIFST--AIDG---KIK 524 (1135)
Q Consensus 480 -------------------------~iwd~~~~~~~~-~-l---~~h~~~v~~l~~~~~~~~~~l~s~--s~dg---~i~ 524 (1135)
.|+|+.+++... . . ..-..-+..+.|.+++ ..|+.. +.+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 234444433211 0 0 1223345566666554 422222 2222 255
Q ss_pred EEeCCCCCceEEecC-CCCeE---EEEEEc-CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce-eEEEEeC
Q 001157 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~s~ 598 (1135)
++|..++........ ...+| ....+. +++..++..+. ++|-.+|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 567766555443321 22222 244554 88888877765 677888999998877644 3333222 45 4578899
Q ss_pred CCCEEEEEe-c----CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 599 TRNRFLAAG-D----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 599 ~~~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
+++.++..+ . ...++.-++..+..+..+...... ...+.|||+|++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 888776533 3 234555566623444555443332 148999999998876543
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=2.8e-06 Score=96.44 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=134.2
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEE
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 788999999998888877655556766665 6689999999999999999999999999999999987
Q ss_pred EEEcCCCCeEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC-cEEEE-EECCcEE
Q 001157 930 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLV-VHESQIS 998 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~-~~d~~i~ 998 (1135)
+.. .|+.|+|||. |.-|+|||+...+.+. .+..+. ...-+.|.|.- ..+++ +..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~-------~P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPY-------GPQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--Cccccc-------CchhhhhcccccceEEEEeccccee
Confidence 655 6889999874 5668999999866443 222222 22456777753 23444 6789999
Q ss_pred EEec---cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001157 999 VYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 999 vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
+-|. ......... ...-+..+.++++|++|..+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~-v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKM-VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeE-EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9884 111111111 122255699999999999999999999999998
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=5.4e-07 Score=63.26 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.3
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=2.3e-05 Score=89.06 Aligned_cols=202 Identities=16% Similarity=0.172 Sum_probs=141.0
Q ss_pred EEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCC-eeEEEEeCCCCcEEEEEeCCc-----cEEEEEcccc----
Q 001157 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVD---- 914 (1135)
Q Consensus 846 l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~---- 914 (1135)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45778899999998 899988874 45666888888877 55555544 557888877765 4899998742
Q ss_pred --eEe--EeecC-----ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 915 --EVK--TKLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 915 --~~~--~~l~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
+++ .++.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--........-...+. .+|++++|..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 233 12222 245688999999999999999999999886543222222222222332 68999999999
Q ss_pred CcE-EEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 986 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 986 g~~-l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
++. ++++.-..|.+|.++++. ........|+.++.|..|++.-..+++++ ...|++|+.+.......+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 555778899999997666 33333456688899999887655455554 457999999854443333
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.43 E-value=9.3e-05 Score=77.47 Aligned_cols=204 Identities=19% Similarity=0.191 Sum_probs=125.1
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-cceEeEe-
Q 001157 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 919 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~- 919 (1135)
.+++|.||+++++.. .-+|.|.|+..++.+.++..+ ....+--+ +++-+.+.|.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 367888999888876 467999999999998888733 22222222 33557788899999999887 4554322
Q ss_pred ---ecCccCce-EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC----CCCCceeEEECCCCcEEEE
Q 001157 920 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS----PLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 920 ---l~~h~~~i-~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~fspdg~~l~~ 991 (1135)
|..-.+++ ..-+++.++..++-.+.+|.|+--|+......-............ ..++-..+++++...+|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 233445555566667788888888877655322222221110000 0033456888887776666
Q ss_pred -EE---CC-------cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCC-EEEEE-ecCCcEEEEecCCCceeeccC
Q 001157 992 -VH---ES-------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 992 -~~---d~-------~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~-~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
-+ ++ .|.+||+ +.+.+..+.. ..++.+|..|.|.+ +|++. ..++.+.+||..+|+.+.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 22 22 3777787 6666666643 34688999998887 55444 458999999999999998886
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.39 E-value=9.8e-05 Score=77.29 Aligned_cols=286 Identities=10% Similarity=0.097 Sum_probs=162.3
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----------cCCeEEEEECCCCeeeEEEeCCCC-----
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1135)
++++++|..+++.+-.+..... ..+..+|+++.+++++ ..-.|.+||..+..+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4699999999998877776533 3466899999988753 234699999999998887765532
Q ss_pred CCCcCeEEEecCCCEEEEEeC--CCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCC
Q 001157 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1135)
.......+++.||+++++... ...|.|.|+..+ +....+.......
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~------------------------------- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWL------------------------------- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEE-------------------------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEE-------------------------------
Confidence 123456788899998876543 567888888877 4455443321110
Q ss_pred CCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeee
Q 001157 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 789 (1135)
.-...+..+...+.||.+....+........ +.........+.-+..-+++..+..++-
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ-KSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEE-EEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeE-eeccccCCCCcccccccceECCCCeEEE
Confidence 0011223445556677777776664322221 1111111112222334445555544555
Q ss_pred ecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe----CC----
Q 001157 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG---- 861 (1135)
Q Consensus 790 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s----dg---- 861 (1135)
.+-+|.|+--++......+ ..-|...+.......- . .+.-.-+++++...+|.+.- ++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W---r--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGW---R--PGGWQLIAYHAASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp EBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTE---E--E-SSS-EEEETTTTEEEEEEEE--TT-TTS
T ss_pred EecCCEEEEEeccCCcccc---------cCcccccCccccccCc---C--CcceeeeeeccccCeEEEEecCCCCCCccC
Confidence 6667777766664322110 1123322211100000 0 22233477777665555431 22
Q ss_pred ---eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEcccceEeEeecCc
Q 001157 862 ---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGH 923 (1135)
Q Consensus 862 ---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h 923 (1135)
.|.++|+.+++.+.++.. ..++.+|+++.++..+|.+.+ .++.+.+||..+|+.+.++.+-
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 399999999999999873 346889999996666776554 5789999999999999988743
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=88.44 Aligned_cols=162 Identities=13% Similarity=0.191 Sum_probs=122.0
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC----Cce
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GSR 534 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~ 534 (1135)
++|+-+-.... ++.+.+-.|-+-|+++|.. +.|. ..+.|.++.|+... ++++.|..+|.|..+|++.. ...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 36665433323 5566678888999888764 3444 67788899887655 79999999999999999876 233
Q ss_pred EEecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCceEEEEeCCCCce---eEEeecccCCce-eEEEEeCCCCEEEEEecC
Q 001157 535 VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSL-GVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 535 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d 609 (1135)
...-.|...|+++..-. ++.+|++.+ .++.|.+||.+.-+. +.++.+|.+... .-+-+.+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~----M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASD----MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeecc----CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 34445778888888766 667777664 488899999987666 899999865321 123456677889999999
Q ss_pred CeEEEEECCCCeeeEEEeCC
Q 001157 610 FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~ 629 (1135)
...|||.++++.++.+++..
T Consensus 368 cytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEEEEEecccCceeeccCCC
Confidence 99999999999999998755
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.6e-06 Score=87.97 Aligned_cols=213 Identities=14% Similarity=0.107 Sum_probs=151.0
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---ceEeEeecCccCceEEEEEcCCCCeEEEEcC-CCcEEEEeCCC
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK 955 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~ 955 (1135)
|...|+.+.-+. .+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+.||.++.|++. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 777788877764 57999999999999997543 2455667889999999999999999999887 99999999998
Q ss_pred cccccceeeecCCCCCCCCCCceeEEECCCC--cEEEEE--ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCE
Q 001157 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVV--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL 1031 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg--~~l~~~--~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~ 1031 (1135)
.......-+..+.+. ..+..++.. ..++++ .++.+.|+|-.+..........-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg~-------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGF-------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCCc-------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 664433223333321 122223332 144443 578999999933332222223457999999999999999
Q ss_pred EEEEecCCcEEEEecCC------CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1032 VYAGFCDGAIGVFDAET------LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++....|.|.-|..+. .+....+.....+ .-..-....+.++.|+| ++..+.+-+.|..|++++..+++
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL--y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL--YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchh--hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999882 1111112111111 00112346778999999 88999999999999999999888
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=1.1e-05 Score=90.55 Aligned_cols=343 Identities=12% Similarity=0.105 Sum_probs=183.8
Q ss_pred eEEEEeCCCCEEEEEe----cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchh
Q 001157 592 GVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~ 667 (1135)
+..+|+|...+++.++ ..|.|.|| .++|++...+..+- .+.+++|+|..-.|+.|-.-|.+.+|...+. +.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccce---ehhhhccChHHHHHhhccccceeEEEecCCc-ee
Confidence 3466888888888765 56788887 45666554443332 3578999999999999999999999987654 11
Q ss_pred eeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccc
Q 001157 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1135)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1135)
. +..
T Consensus 94 h-tv~--------------------------------------------------------------------------- 97 (1416)
T KOG3617|consen 94 H-TVV--------------------------------------------------------------------------- 97 (1416)
T ss_pred e-eec---------------------------------------------------------------------------
Confidence 1 100
Q ss_pred cccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCC
Q 001157 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827 (1135)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1135)
..|...|..+.||++|..++++..-|.+.+|.+.... .+.+..
T Consensus 98 ---------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g----------------~~q~~~ 140 (1416)
T KOG3617|consen 98 ---------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG----------------EIQTSN 140 (1416)
T ss_pred ---------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc----------------ccccch
Confidence 1166788999999999999999999999999875311 112222
Q ss_pred ccccCCCCCCCCCCCeeEEEeecCCC------EEEEEe-CCeEE-EEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEE
Q 001157 828 LMTNDINESKPTEESAACIALSKNDS------YVMSAS-GGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899 (1135)
Q Consensus 828 ~~~~~~~~~~h~~~~v~~l~~s~dg~------~la~~s-dg~i~-iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las 899 (1135)
++...+.. .-...|..+++++. ..++.+ +..+- .++......-+... |.+ .| +|..+..
T Consensus 141 ~~~hel~~----~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ksg-------v~-~g~~F~~ 207 (1416)
T KOG3617|consen 141 IMQHELND----QLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KSG-------VP-KGTEFLF 207 (1416)
T ss_pred hhhhHhhc----eeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-ccC-------CC-CCcEEEE
Confidence 22222222 12234555566643 223333 33232 33332111001111 111 24 6777778
Q ss_pred EeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCcee
Q 001157 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 900 g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1135)
++.+|+|+--| ..|++....+..+ . ..+-|.+-..-++..-.+-++.++-+.........+.....|..+.
T Consensus 208 ~~~~GtVyyvd-q~g~~~~V~k~dS-~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg------ 278 (1416)
T KOG3617|consen 208 AGKSGTVYYVD-QNGRQRTVHKLDS-E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG------ 278 (1416)
T ss_pred EcCCceEEEEc-CCCcEEEEEEccc-h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC------
Confidence 88999998887 3455544443221 1 2244555444444444444444444332211111111112222110
Q ss_pred EEECCCCcEEEEEE-CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 980 VQFHNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 980 ~~fspdg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
..|. ++++. .| |...+. .+ +......++++|++..+..|+.|...|.|.+|.-.....+..-..
T Consensus 279 ----rqGg-iA~sEssG---vLr~~e----Ky--g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~- 343 (1416)
T KOG3617|consen 279 ----RQGG-IACSESSG---VLRKSE----KY--GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTI- 343 (1416)
T ss_pred ----ccCc-cccccccc---cccCCc----ch--hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCc-
Confidence 0122 22221 12 111000 01 011267899999999999999999999999996543322211110
Q ss_pred cccCccccCCCCCCcEEEeeCCCCCCEEEEEe
Q 001157 1059 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~ 1090 (1135)
..............+..+.|.| -...++.-+
T Consensus 344 d~w~l~~~~e~~g~I~~i~Wg~-~k~~~avn~ 374 (1416)
T KOG3617|consen 344 DVWTLNGKRESLGKISLIRWGP-IKSTAAVNT 374 (1416)
T ss_pred ceEEecCchhhccceEEEEecc-ccchhhhhh
Confidence 1111111123346788999998 334444443
No 328
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=4e-06 Score=85.90 Aligned_cols=119 Identities=14% Similarity=0.211 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCCCc-ccccchhhHHHHHH
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTK-VEDNRYSMKIFFEI 76 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~l~~~i~~g~w~~~~~~l~~l~~-~~~~~~~~~~~~~l 76 (1135)
.-+-|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.-...-.. +. +....+-|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 346799999999999999999999999986 237888999999999988776543211 11 1122477999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccc
Q 001157 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQ 126 (1135)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 126 (1135)
+.|.|+||+..+++.+|+.+.++.+.|....+.++++....++.++....
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 99999999999999999999999999998888899999999998875543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=3e-05 Score=88.13 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=134.9
Q ss_pred EEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc-eEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCccccc-
Q 001157 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 960 (1135)
Q Consensus 888 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~- 960 (1135)
+|++ ++..+|.|+.+|.|.+++ ..-+.+..++++... |+.+-...+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4667 778999999999999887 344555778888777 555544444478999887754 9999998754433
Q ss_pred ceee---ecCCCCC-CCCCCceeEEECCCCcEEEEE-ECCcEEEEec---cCCcccccCCCCCCCCCeEEEEEccCCCEE
Q 001157 961 SRFI---QAPAGRQ-SPLVGETKVQFHNDQTHLLVV-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLV 1032 (1135)
Q Consensus 961 ~~~~---~~~~~~~-~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l 1032 (1135)
..++ +...... ....++..++.|.+-+.+++| .+|.|..+.- ..+..+.- -.+.-..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence 3333 1111011 113688999999998888887 6888988865 11111111 112227899999999999873
Q ss_pred EEEecCCcEEEEecCCCce--eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCC
Q 001157 1033 YAGFCDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1033 ~s~~~dg~V~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~ 1110 (1135)
.-...-..|.+|.+. |+. ++.+ ..|+...-|..+++..+.+++++ +..+.+++...-++-|..+
T Consensus 187 lFv~Tt~~V~~y~l~-gr~p~~~~l-----------d~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS-GRTPSLKVL-----------DNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEec-CCCcceeee-----------ccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeec
Confidence 333345689999998 443 2112 35666777778877444344433 5678899887655555554
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00011 Score=82.13 Aligned_cols=286 Identities=11% Similarity=0.070 Sum_probs=162.9
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|.--+++..++ +++.|+..|.+++|+-.+++.... ...+-.+.+..+..|++..++|+
T Consensus 33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVAA 93 (726)
T ss_pred cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhhh
Confidence 34566666777777 788999999999999887765432 02234556777889999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEe---ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC----eeEEEecCCCC
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEA 498 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~h~~ 498 (1135)
|+..|.|.++-++.+..-.....- ..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+....+
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 999999999998874432221111 13678899999999999 7999999999999888762 11233334566
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCCCCeEEEEEEcCC----CCEEEEEeeCCCCCceEEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~w 572 (1135)
.|-.+.... +.+|++. .-.. .+++.+...... ..+..+-.-...+|-|. .+-.+.|+. .-.++|
T Consensus 172 ~IVQlD~~q---~~LLVSt-l~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-----PG~RlW 241 (726)
T KOG3621|consen 172 EIVQLDYLQ---SYLLVST-LTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-----PGLRLW 241 (726)
T ss_pred ceEEeeccc---ceehHhh-hhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-----CCCceE
Confidence 777776532 1333333 2222 234433222111 11111111233444443 233333332 126778
Q ss_pred eCC-CCceeEEeeccc-------------C----------CceeEEEE----eCCCCEEEEEecCCeEEEEECCCCeeeE
Q 001157 573 NES-EGAIKRTYSGFR-------------K----------RSLGVVQF----DTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 573 d~~-~~~~~~~~~~~~-------------~----------~~v~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
... .|..+++..-.. . ..-..+.| .-.+.++++-++-| |+|+|..+.+.+.
T Consensus 242 ead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~l 320 (726)
T KOG3621|consen 242 EADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVYL 320 (726)
T ss_pred EeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEEE
Confidence 654 244443321100 0 00000111 11223455554444 8889888766555
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchhe
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~ 668 (1135)
-.... ..|..+ +..|+-|++-..|+.+++..+.+..+.+
T Consensus 321 ~se~~---~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 321 WSEGG---HDILDV--SHCGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred eecCC---CceeEE--eecCceEEEEecCCceeEEEeehhHHHH
Confidence 44322 134333 3456677777778888888877664433
No 331
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.28 E-value=0.02 Score=67.17 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=126.1
Q ss_pred CCEEEEEeCCeEEEEeCCCceE--EEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--------------ccEEEEEcccce
Q 001157 852 DSYVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMED--------------SSVQIYNVRVDE 915 (1135)
Q Consensus 852 g~~la~~sdg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------------g~v~iwd~~~~~ 915 (1135)
+..++++..+.+++.-++.-+. +++.. -......+++.+ ....+++.+.- ..++++|-.|-+
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 3467777777777776654322 23322 223455666665 34444433211 236666666655
Q ss_pred EeEeecCc----cCceEEEEEcCC-CCeEEEEc----------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeE
Q 001157 916 VKTKLKGH----QNRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1135)
Q Consensus 916 ~~~~l~~h----~~~i~~l~~s~d-~~~l~s~~----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1135)
.+...+-. ...|.++.|..| +.+++.|. ..|.|.++.+...+.+....-.... +.+ .
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav--~ 833 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAV--Y 833 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cce--e
Confidence 44332211 112455568877 66777664 2467888877763332221111111 122 2
Q ss_pred EECCCCcEEEEEECCcEEEEeccCC-cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC--CceeeccCC
Q 001157 981 QFHNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET--LRFRCRIGP 1057 (1135)
Q Consensus 981 ~fspdg~~l~~~~d~~i~vwd~~~~-~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~--~~~~~~~~~ 1057 (1135)
+.---+..++++-+..|++|+.+.+ .++.- ..|..++..+...-.|..+++|..=++|.+-..+. |...-.-+
T Consensus 834 aL~~fngkllA~In~~vrLye~t~~~eLr~e---~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr- 909 (1096)
T KOG1897|consen 834 ALVEFNGKLLAGINQSVRLYEWTTERELRIE---CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR- 909 (1096)
T ss_pred ehhhhCCeEEEecCcEEEEEEccccceehhh---hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-
Confidence 2223344566667789999999444 44332 34578899999999999999999888877755543 33332211
Q ss_pred CcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1058 SAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. -+....+++.... ++..+-+..+|.+.+-...+
T Consensus 910 -D--------~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 910 -D--------YNPNWMTAVEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred -h--------hCccceeeEEEec--CceEEeecccccEEEEEecC
Confidence 1 2234555665554 34555566778887776654
No 332
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2.9e-06 Score=59.47 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE
Q 001157 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1135)
Q Consensus 871 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 910 (1135)
++++.++.+|.+.|++++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=2.1e-05 Score=88.73 Aligned_cols=188 Identities=14% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccc
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1135)
...++|++++. ++++.|+.+|.|++++....- .+...|+.. ..+|.+++||+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35678888864 799999999999999976433 444446554 5689999999999999999998876433
Q ss_pred ceeeecCCCCCCCCCCceeEEECCC-----CcEEEEEECCcEEEEecc--CCcccccCCCCCCCCCeEEEEEccCCCEEE
Q 001157 961 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1135)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fspd-----g~~l~~~~d~~i~vwd~~--~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~ 1033 (1135)
..-.+ .++..++++|| .+.+++|+...+.++.-+ +..... ..+.-.++|.++.| .|.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEe--cCcEEE
Confidence 22222 46789999999 456677554448777651 111111 11222789999998 566777
Q ss_pred EEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1034 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1034 s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
=++.+ -|+|||+.+++.+..++++...+ -.....-.+.|.+ + ..|+-| .--+|++..+.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~~-----R~e~fpphl~W~~-~-~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQSV-----RPELFPPHLHWQD-E-DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCCC-----CcccCCCceEecC-C-CeEEEe-cCCeEEEEEEe
Confidence 77644 58999999999999888664222 2234566788987 3 344444 45578888887
No 334
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.26 E-value=4e-06 Score=79.84 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=97.9
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001157 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1135)
Q Consensus 38 ~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1135)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998764332111 1248899999999999999999999999999987664335677888888
Q ss_pred hhccccccc--hhhhcccCCchhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001157 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1135)
Q Consensus 118 ~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q 182 (1135)
+|......+ ...+..+-+ ...|+.+.+.+.+.+-... .+| +.+.|+.++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~------~~~--~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSY------GLP--KESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHh------CcC--CCCHHHHHHHHHHHHh
Confidence 888766554 223333323 3778999999988775422 111 2456888888765443
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.25 E-value=0.00038 Score=77.67 Aligned_cols=267 Identities=13% Similarity=0.155 Sum_probs=143.2
Q ss_pred cCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccccccee-eccccccc--ccccccccccC
Q 001157 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV-WDISAASM--PLQNALLNDAA 408 (1135)
Q Consensus 332 ~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~h~ 408 (1135)
+|..+++..........+....|||||+.++.+- ++.|.+++..+++...- +..- -.+..+.. ..+..++
T Consensus 28 ~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~---- 100 (353)
T PF00930_consen 28 YDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR--DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVF---- 100 (353)
T ss_dssp EETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE--TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTS----
T ss_pred EecCCCceEECcCCccccccceeecCCCeeEEEe--cCceEEEECCCCCeEEe-ccccceeEEcCccceecccccc----
Confidence 3334444333333457899999999999655443 78999999877744321 0000 00000000 0111111
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-C-----------------------------------eEEEEEcCCCCceeeeeE--ee
Q 001157 409 ISVNRCVWGPDGLMLGVAFSK-H-----------------------------------IVHLYTYNPTGELRQHLE--ID 450 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~d-g-----------------------------------~i~iwd~~~~~~~~~~~~--~~ 450 (1135)
+.-..+-|||||++||....| . .+.|+|+.+++....... +.
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 223568999999999876322 1 133455555443211000 11
Q ss_pred cCCCCeeEEEEecCCCceEEEEEcCCC---cEEEEEcCCCeeEEEecC-CCCCe---EEEEec-cCCCccEEEEEEcCCe
Q 001157 451 AHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEG-HEAPV---YSVCPH-HKESIQFIFSTAIDGK 522 (1135)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~s~~~d~---~i~iwd~~~~~~~~~l~~-h~~~v---~~l~~~-~~~~~~~l~s~s~dg~ 522 (1135)
.-...+..+.|.++++.+++.....+. .+.++|..++.....+.. ..+.| ....+. ++++ .++.....||-
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEEEEcCCC
Confidence 223457889999998854555555544 566778877665433321 22222 244444 4443 56666668887
Q ss_pred EEEEeCCCCCc-eEEecCCCCeEE-EEEEcCCCCEEEEEe-eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC
Q 001157 523 IKAWLYDYLGS-RVDYDAPGNWCT-MMAYSADGTRLFSCG-TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 523 i~~wd~~~~~~-~~~~~~~~~~v~-~~~~s~~~~~l~~~~-~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~ 599 (1135)
-++|-++.... ...++...-.|. -+.++++++.++..+ .+......|+..++..+..+..+..... .-..+.|||+
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCC
Confidence 66665544333 334444444564 477889888776444 3233456777778773444556665443 2257999999
Q ss_pred CCEEEEEe
Q 001157 600 RNRFLAAG 607 (1135)
Q Consensus 600 ~~~l~~~~ 607 (1135)
+++++...
T Consensus 339 g~y~v~~~ 346 (353)
T PF00930_consen 339 GKYYVDTY 346 (353)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99987643
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.21 E-value=0.007 Score=65.10 Aligned_cols=282 Identities=13% Similarity=0.117 Sum_probs=141.6
Q ss_pred eEEEeecCCCeEEEEEeCCCc--EEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEEE
Q 001157 350 MSMDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~~ 426 (1135)
+.=+|.+||+.||.++..||. +.+-|+.+++... |+... .......++|+++.++-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEE
Confidence 334789999989998877774 5555777776543 22222 223356778999988777
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe--cCCCceEEEEEc----------------------CCCcEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG----------------------DDKMIKVW 482 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~s~~----------------------~d~~i~iw 482 (1135)
.....++-.|+++.+.- .+.. .....+-...|. .|+. .++..- -.+.|.--
T Consensus 99 ~~~~~l~~vdL~T~e~~-~vy~--~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEER-VVYE--VPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp ETTTEEEEEETTT--EE-EEEE----TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred ECCCeEEEEECCcCcEE-EEEE--CCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 67778999999987643 2223 334444445554 4455 333221 11245566
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc---CC-eEEEEeCCCCCce-EEecC--CCCeEEEEEEcCCCCE
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DG-KIKAWLYDYLGSR-VDYDA--PGNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~---dg-~i~~wd~~~~~~~-~~~~~--~~~~v~~~~~s~~~~~ 555 (1135)
|+.+|+....+. -...+..+.|+|..+ ..|+-|-. +. .-|+|-+++.... ..+.. ....+..=-|.|||..
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence 778877544443 566788889998764 34444422 22 1366765543332 22221 2335666678999998
Q ss_pred EEEEee-CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC----------------CeEEEEECC
Q 001157 556 LFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMD 618 (1135)
Q Consensus 556 l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~ 618 (1135)
+...+. .+..+..|.-+|+.+++........ ...-+..++||++++-=+.| --|+++++.
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 876443 3334567888888887654332221 23346667888887762322 156778888
Q ss_pred CCeeeEEEeCC--------CCCCCcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 619 NMNMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 619 ~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
.++........ .....-.-..|+|||+.++-.++ .|...||-+
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 76654322211 00112256899999998765554 676666644
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00017 Score=81.66 Aligned_cols=185 Identities=14% Similarity=0.156 Sum_probs=124.9
Q ss_pred eEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE
Q 001157 775 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~ 854 (1135)
+.+.+++ ++.++.|+.+|.+++++.+... .. ... | ... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----------------------~~--~~~--~-s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----------------------KT--NFD--H-SSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc-----------------------cc--ccc--c-ccc------ccCCce
Confidence 3444443 4568888889999998754211 00 000 2 111 568999
Q ss_pred EEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC----CCcEEEEEeCCccEEEEEcc--cceEeEeecCccCce
Q 001157 855 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRI 927 (1135)
Q Consensus 855 la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~i 927 (1135)
+++|+ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-. ..+.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 8999999998888777666 4578999999993 256788899888 8777532 111112455567889
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEecc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK 1003 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~ 1003 (1135)
.++.| .|.++|-++.+| |+++|+.+++.+... ..+.+...+......+.|.++.+ |++|-..+|+|..++
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99999 588999999998 999999987754422 22222222224456788888765 445555577777774
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.8e-05 Score=76.61 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=141.7
Q ss_pred EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC-CeEEE
Q 001157 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVS 941 (1135)
Q Consensus 863 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s 941 (1135)
+++.+..+.+...-+.++...|..++|||....++..++.+..|.|.|+++..++..+..| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6777777777666677788889999999955558899999999999999999999999988 789999998876 56778
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeE------EECCCCcEEEEEECCcEEEEec--cCCcccccCCC
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV------QFHNDQTHLLVVHESQISVYDS--KLECSRSWSPK 1013 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~fspdg~~l~~~~d~~i~vwd~--~~~~~~~~~~~ 1013 (1135)
|...|.|.|+|+...+-..........- .+|..+ ...+.|.+|+.+ --....|++ ...+.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 8899999999998755322211111111 122222 333444444442 223456666 33332221111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecC-------CcEE-EEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCE
Q 001157 1014 DALPAPISSAIYSCDGLLVYAGFCD-------GAIG-VFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1014 ~~h~~~i~~~~~s~dg~~l~s~~~d-------g~V~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 1085 (1135)
+-.+...++.+.+-.+.++....- ..|- --|-.+|..++..+...+ ......-++.. .+.-.+ +.++
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs~~~kl~t~~--ai~~~~-~nn~ 402 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GSKQTKLSTTQ--AIRAVE-DNNY 402 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CCccccccccc--ceeccc-cccE
Confidence 114556666666655554443321 1111 123345666665543322 11111111111 122233 4455
Q ss_pred EE-EEecCCcEEEEecCCCccccCCCC
Q 001157 1086 IA-LGMSDGAVHVVEPSDAELKWGGTP 1111 (1135)
Q Consensus 1086 l~-s~~~Dg~i~lW~~~~~~~~~~~~~ 1111 (1135)
|+ .|.+..++++||..+.+....+|.
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLAL 429 (463)
T ss_pred EEEecCCcceeEEeccchhheeeeccc
Confidence 44 566668999999999986666554
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.00055 Score=77.06 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=122.1
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
......+.++|+|++++++++|...|+.....+.... +.-..++|.+ .++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4456789999999999999999999999665554332 3456788998 555 55666688999974333333233
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEE
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~v 999 (1135)
++.. ..+..|-. |.+|...+.+ .|.+||+++++.+. ...- .+|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3322 12344432 8888777655 79999999987433 2221 2478999999999999988889999
Q ss_pred EeccCC------------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce--eeccCCCcccCccc
Q 001157 1000 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF--RCRIGPSAYIPTYA 1065 (1135)
Q Consensus 1000 wd~~~~------------~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~--~~~~~~~~~~~~~~ 1065 (1135)
++.+.. .+..... ....|.+.+|..| .++-.+.. .++. +..|+. ++.+
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l---------- 231 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL---------- 231 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-----------
T ss_pred EEecchhcccccccCchhceEEEEE---ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc----------
Confidence 888544 2222211 1457888888776 33333333 6665 343432 2222
Q ss_pred cCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1066 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
...+.-+.+.| ..+.+.....|+.+..+.+.-.+
T Consensus 232 ----d~~~yllgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 232 ----DKPLYLLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ----SS--EEEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred ----CCceEEEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 13444556666 55778888899999888876544
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=0.00034 Score=77.35 Aligned_cols=139 Identities=13% Similarity=0.113 Sum_probs=94.1
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEE-EEE---eCCCc----EEEEEcCCccccccccceeecccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTIL-LVG---TNVGD----ISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~ll-a~g---s~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
+.++......-+.+.....+....++.||-...+.+ .+. +.+|. -.+|++..++....
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-------------- 251 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-------------- 251 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE--------------
Confidence 334444444455666666667778899987443333 332 23443 35566654432110
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~ 478 (1135)
...--.....|.|++++|+.+.|+.|+.||+|++||...+... +....-..+.++|+|+|. ++++|+..|.
T Consensus 252 --svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGe 322 (545)
T PF11768_consen 252 --SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGE 322 (545)
T ss_pred --EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCce
Confidence 1112246778999999999999999999999999998876322 222345678999999999 8999999999
Q ss_pred EEEEEcCCCe
Q 001157 479 IKVWDVVAGR 488 (1135)
Q Consensus 479 i~iwd~~~~~ 488 (1135)
+.+||+.-..
T Consensus 323 lQ~FD~ALsp 332 (545)
T PF11768_consen 323 LQCFDMALSP 332 (545)
T ss_pred EEEEEeecCc
Confidence 9999987443
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.04 E-value=9.1e-05 Score=84.69 Aligned_cols=185 Identities=12% Similarity=0.109 Sum_probs=140.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1135)
.++.|+....+..+|+.+++..+...-..+.|.-|+. ++.++.+|...|+|.+-|..+.+.+.++..|.+.|..+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 5777887888889999998888776655556777764 33789999999999999999999999999999988764
Q ss_pred EcCCCCEEEEEeeCCC-----CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCC-Ce
Q 001157 549 YSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN-MN 621 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~-~~ 621 (1135)
+-.|+.|++||.+.. -|..|++||++..+.+.-+.-+.+ ..-+.|.|.- ..++.++..|...+-|..+ ++
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccceEEEEecccceeeccccccCC
Confidence 557899999987543 366799999998877766655544 2346788864 5677788899999988332 12
Q ss_pred e-eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 622 M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+ ......+.....+..+.++++|..++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 222222222234889999999999999999999999983
No 342
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.03 E-value=7.3e-06 Score=50.66 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhc
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Es 32 (1135)
+++.+||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999996
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.02 E-value=0.007 Score=70.70 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC------eE--EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------~v--~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
..++.++.++.+.-.|..+++.+........ .+ ..+++. ++..++.++ .++.|+-+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~----~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGT----FDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEec----CCCeEEEEECCCCCEeeee
Confidence 4677777788888889888877766544322 00 011111 224555554 3778999999999998877
Q ss_pred ecccCC----ce-eEEEEeCCCCEEEEEe---------cCCeEEEEECCCCeeeEEEeC
Q 001157 584 SGFRKR----SL-GVVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 584 ~~~~~~----~v-~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...... .+ ....+. +..++.++ .++.++.+|..+++.+-....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 01 111222 24455543 368899999999998887754
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.98 E-value=0.01 Score=63.90 Aligned_cols=231 Identities=10% Similarity=0.062 Sum_probs=112.9
Q ss_pred eEEEEcCCCCEEEEEeC-C--CeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 412 NRCVWGPDGLMLGVAFS-K--HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~-d--g~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+.=+|.+||+.|+.++. | ..+.+.|+.+++..+ |..+. .......++++++ .++-......|+--|+++.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT-
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcC
Confidence 33468899987777665 4 467777888865432 22222 2233567778887 5554545678899999998
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEc----------------------CCeEEEEeCCCCCceEEecCCCCeEE
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----------------------DGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~----------------------dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
+....+......+-...|..+.++..++..-. ...|...|+.+++....+. ...++.
T Consensus 113 e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlg 191 (386)
T PF14583_consen 113 EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLG 191 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EE
T ss_pred cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcccc
Confidence 76655555666666667765656666544321 1234455677655444433 566888
Q ss_pred EEEEcCCCCEEEEEeeCCCCCce-EEEEeCC-CCceeEEeeccc-CCceeEEEEeCCCCEEEEEe-----cCCeEEEEEC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESH-LVEWNES-EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-----DEFQIKFWDM 617 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~-i~~wd~~-~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~ 617 (1135)
.+.|+|....+++-+..+..+.. -++|-++ .|...+.+..+. ...+.-=.|.|||..+.--+ .+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 99999976665544433322221 2445443 233333333332 22355567999998766522 3556777888
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
.+++........ ...-.-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 887654433322 22334456788877654443
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00056 Score=76.64 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=102.7
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
+...+.--++...+++++.|++.|.+.+|+-.. ++.......+ - .+.+....+|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--A-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--c-cceEEEEEecc
Confidence 344555566778899999999999999986432 2222211111 1 45667778899
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceE-----EEEe-eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce----EeEe
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKV-----MTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTK 919 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~-----~~~~-~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----~~~~ 919 (1135)
+..++|.|+ .|.|.++-+..... +..+ +.|...|++++|++ ++..+.+|+..|.|..-.+.+.. ..+.
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce
Confidence 999999988 68899988765321 1111 23678899999999 99999999999999998888721 1222
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+..-.+.|..|... ++.+|++...- ..+.+++.
T Consensus 166 il~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred eeccCcceEEeecc-cceehHhhhhh--hheeecch
Confidence 33345667777664 44455544432 34555554
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=0.0004 Score=76.78 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=84.3
Q ss_pred CCCeeEEEeec-CCCEEEEE----e-CCe----EEEEeCCCceEEEEe---eCCCCCeeEEEEeCCCCcEEEEEeCCccE
Q 001157 840 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTMF---MSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1135)
Q Consensus 840 ~~~v~~l~~s~-dg~~la~~----s-dg~----i~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasg~~dg~v 906 (1135)
+....++.||. +...+.+. + +|. ..+|++..++..+.- -.....|.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 44557788876 34444443 2 343 567888765543221 13667899999999 88999999999999
Q ss_pred EEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
.+||...+.. .+....-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999876632 23334456789999999999999999999999999753
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.94 E-value=0.0082 Score=69.16 Aligned_cols=250 Identities=13% Similarity=0.106 Sum_probs=138.1
Q ss_pred eeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+....+||||++++++-+..| .+++.|+.+|+.+.. . +.. ..-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEEE
Confidence 446789999997666655555 599999999976542 0 111 1122399999999877
Q ss_pred EEeCCC-----------eEEEEEcCCCCceeeeeEeecCCCC--eeEEEEecCCCceEEEEEcC-C-CcEEEEEcCCC--
Q 001157 425 VAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGD-D-KMIKVWDVVAG-- 487 (1135)
Q Consensus 425 ~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-- 487 (1135)
....+. .|+.|.+.++..-. ...+...... ...+..++|++.++|.+.+. + ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 765332 37777877654321 1133333332 56888999999533323322 2 35788888775
Q ss_pred --eeEEEecCCCCCe-EEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 488 --RKQYTFEGHEAPV-YSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 488 --~~~~~l~~h~~~v-~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
.....+......+ ..+... ++ .+++... ..+.|...++..... ...+..+...+.-..+...+++|+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 2333333333334 333332 21 3444332 346677778777663 2244444443233333345566665
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEE--Ee--cCCeEEEEECCCCeee
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1135)
... .++...|+++++..+...........+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 443 2457789999998555555555544445666665666655443 22 4467888999887654
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.92 E-value=0.0046 Score=72.22 Aligned_cols=278 Identities=9% Similarity=0.042 Sum_probs=156.2
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee--EEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN--RCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
+..++.++.|.-.|..+|+.+-+... .... ..+...+. .++.. ++..++.++.++.|.-+|.++
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~-------~~~~------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T 129 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDP-------KLPA------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET 129 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCC-------CCCc------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC
Confidence 44567789999999999987643211 1000 00000010 11111 236777888999999999999
Q ss_pred CCceeeeeEeecCC---CCe-eEEEEecCCCceEEEEEc---------CCCcEEEEEcCCCeeEEEecCCCCC-------
Q 001157 440 TGELRQHLEIDAHV---GGV-NDIAFAHPNKQLCIVTCG---------DDKMIKVWDVVAGRKQYTFEGHEAP------- 499 (1135)
Q Consensus 440 ~~~~~~~~~~~~h~---~~v-~~l~~s~d~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~l~~h~~~------- 499 (1135)
|+.+-... ...+. ..+ .+..+. ++ .++.++ .++.+...|..+|+.+..+......
T Consensus 130 G~~~W~~~-~~~~~~~~~~i~ssP~v~-~~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 130 GKQVWKFG-NNDQVPPGYTMTGAPTIV-KK---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred CCEeeeec-CCCCcCcceEecCCCEEE-CC---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 98765321 11110 001 112222 22 344443 4678999999999988876532110
Q ss_pred -------------eE-EEEeccCCCccEEEEEEcCC------------------eEEEEeCCCCCceEEecCCCCeEE--
Q 001157 500 -------------VY-SVCPHHKESIQFIFSTAIDG------------------KIKAWLYDYLGSRVDYDAPGNWCT-- 545 (1135)
Q Consensus 500 -------------v~-~l~~~~~~~~~~l~s~s~dg------------------~i~~wd~~~~~~~~~~~~~~~~v~-- 545 (1135)
|. +.++.+ .+..++.++.++ .|.-.|..+++.+..+........
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~--~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDP--KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCcceecCCCCCccCCeeEeC--CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 10 112222 225677776555 788899999988876643221110
Q ss_pred ----EEEE----cCCCC---EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE--------
Q 001157 546 ----MMAY----SADGT---RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-------- 606 (1135)
Q Consensus 546 ----~~~~----s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-------- 606 (1135)
...+ .-++. .++.++ .++.++..|.++|+.+....... ..++.+| +.++.+
T Consensus 283 ~~~s~p~~~~~~~~~g~~~~~V~~g~----~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQPSLADIKPKDGKPVPAIVHAP----KNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCCCeEEeccccCCCeeEEEEEEC----CCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEccccccccC
Confidence 0011 12333 344443 37789999999999887765321 1123333 333332
Q ss_pred ----------ecCCeEEEEECCCCeeeEEEeCCCCC------CCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheee
Q 001157 607 ----------GDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 607 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
..+|.+.-.|+.+++.+-........ .....-.....+..|+.++.||.++.+|..+| +.+..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG-~~lW~ 431 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG-KELWK 431 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC-ceeeE
Confidence 24678899999999888776543110 01111111124678888999999999999999 44433
Q ss_pred c
Q 001157 671 L 671 (1135)
Q Consensus 671 ~ 671 (1135)
.
T Consensus 432 ~ 432 (488)
T cd00216 432 F 432 (488)
T ss_pred E
Confidence 3
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.91 E-value=0.054 Score=63.52 Aligned_cols=110 Identities=9% Similarity=-0.001 Sum_probs=64.6
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC-eEE----------EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.++ .++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4666677777888888888777766543211 111 1122 123455544 3678999999999998
Q ss_pred EEeecccCCceeEEEEeC--CCCEEEEEe------cCCeEEEEECCCCeeeEEEe
Q 001157 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 627 (1135)
..........-..+.-+| .+..++.+. .+|.|+.+|..+|+.+-.+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110000111111 123455543 26899999999999887664
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00061 Score=76.49 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=110.3
Q ss_pred CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe---CC-ccEEEEEcccceEeEe--ecCccCceEEEEEcC
Q 001157 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---ED-SSVQIYNVRVDEVKTK--LKGHQNRITGLAFSP 934 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~---~d-g~v~iwd~~~~~~~~~--l~~h~~~i~~l~~s~ 934 (1135)
..+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++++.+++.... +.++.. .-+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fsp 247 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSP 247 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCC
Confidence 345555554 455555554556677788999 666655442 22 3599999998865444 444443 468999
Q ss_pred CCCeEEE-EcCCCc--EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--C--cEEEEeccCCcc
Q 001157 935 TLNALVS-SGADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--S--QISVYDSKLECS 1007 (1135)
Q Consensus 935 d~~~l~s-~~~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--~--~i~vwd~~~~~~ 1007 (1135)
||+.|+- ...||. |.+.|+.++... .+....+. -..-.|+|||++++...| | .|.+++..+...
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcce---ecccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 9987664 456665 555566665521 13333332 247789999999998544 3 377777766655
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEec-CCc--EEEEecCCCceee
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGA--IGVFDAETLRFRC 1053 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg~--V~vwd~~~~~~~~ 1053 (1135)
..+.... ..-..-.+||||++|+..+. +|. |.+.|+.++....
T Consensus 319 ~riT~~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 319 TRLTFSG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eEeeccC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 4443332 22227788999999987664 344 7777776666433
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0011 Score=74.45 Aligned_cols=205 Identities=10% Similarity=0.060 Sum_probs=118.2
Q ss_pred CceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCC---CcEEEEEcCCccccccccceeeccccccccccccc
Q 001157 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
-.++..|...............+..-+|+|+++.+....-.. ..+.++++.+++....
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i------------------- 233 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI------------------- 233 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-------------------
Confidence 334444444333333333567889999999999765554333 3489999998875432
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEe-CCCe--EEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAF-SKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
....+.-..-+|||||++||.+. .||. |.+.|+.++... .+..-.+.-+.-.|+|||+. ++++.+..|.
T Consensus 234 -~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~ 307 (425)
T COG0823 234 -LNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQ 307 (425)
T ss_pred -eccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcc
Confidence 11333445678999999888774 4554 666677776522 23322333346789999996 3444555554
Q ss_pred EEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCe--EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
|.+.|++.+.. ..+....+.-..-.|+|++ .+++..+. +|. |.+.|+.++.... ..........-.+.++++.
T Consensus 308 I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG--~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~ 383 (425)
T COG0823 308 IYLYDLEGSQV-TRLTFSGGGNSNPVWSPDG--DKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRM 383 (425)
T ss_pred eEEECCCCCce-eEeeccCCCCcCccCCCCC--CEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCce
Confidence 55556554443 3332222222244565554 77776664 344 6666665555422 2223333445578888888
Q ss_pred EEEEe
Q 001157 556 LFSCG 560 (1135)
Q Consensus 556 l~~~~ 560 (1135)
++..+
T Consensus 384 i~~~s 388 (425)
T COG0823 384 IMFSS 388 (425)
T ss_pred EEEec
Confidence 87654
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.0071 Score=68.40 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=108.6
Q ss_pred EEeecCCCEEEEEeCC------------eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 846 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
++.+|.|..+|...|. .|.||+.. |+++..+.=..+.|.++.|+. +. .|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4556666666655433 59999975 566666543348999999987 54 455677999999999863
Q ss_pred ce------EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc-cceeeecCCCCCC---CCCCcee-EEE
Q 001157 914 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQS---PLVGETK-VQF 982 (1135)
Q Consensus 914 ~~------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~---~~~~v~~-~~f 982 (1135)
.. .+....-....+....+..+|-.+.+ .++.+.+- .+.+.. ....+....+... ....... ..+
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence 33 11111112222333344445533333 34433333 222211 0001111111000 0001111 345
Q ss_pred CCCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 983 HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 983 spdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+.+....+. ..++.+.+.+- ..+. .. ..+++..|++||+|++||.-..+|.+.|...+-.+.++++.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 555554444 45556664443 2211 11 14689999999999999999999999999887766666664
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.84 E-value=0.0099 Score=66.17 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=138.9
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----------------------------------------eeeeeEe
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----------------------------------------LRQHLEI 449 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~ 449 (1135)
.|+++.|+++..-||+|...|.|.||.+...+. +....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 488999999999999999999999986643211 1112223
Q ss_pred ecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE--ecC------CCCCeEEEEec---cCCCc---cEEE
Q 001157 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 515 (1135)
Q Consensus 450 ~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--l~~------h~~~v~~l~~~---~~~~~---~~l~ 515 (1135)
+...++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -+++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3456899999998666 799999999999999988887765 222 33467777775 33333 5788
Q ss_pred EEEcCCeEEEEeCCC-CCceE------EecCCCCeEEEEE-EcCC---------------------CCEEEEEeeCCCCC
Q 001157 516 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1135)
Q Consensus 516 s~s~dg~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1135)
.|...|.+.+|.+.- ..... ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 899999999997752 11111 1113344444443 3221 11444544 4
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEe-----CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC--CCCcCeEE
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1135)
..++++...+.+.........- ....+.+- ..+..|++-..+|.|++|.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 5699999887776554442211 23334442 3456777788999999999999999988876421 12356677
Q ss_pred EecCCCEEEEEeCCCcEEEEEC
Q 001157 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88888877665443 4444443
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.84 E-value=0.076 Score=62.27 Aligned_cols=196 Identities=13% Similarity=0.051 Sum_probs=117.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC--CCe-------eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGV-------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--~~v-------~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
+..+.+++.++.|.-.|..+|+.+-.... .... ..+ ..+++. +. .++.++.|+.|.-.|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~-~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDP-KLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecC-CCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence 45666677778888889888876543211 1110 010 112332 23 4667788999999999999998
Q ss_pred EEecCC--CC--CeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceEEecCCCC------------------
Q 001157 491 YTFEGH--EA--PVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGN------------------ 542 (1135)
Q Consensus 491 ~~l~~h--~~--~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~------------------ 542 (1135)
...... .. .+.+ .|.-.+..++.++ .+|.|.-+|.++++.+..+..-..
T Consensus 144 W~~~~~~~~~~~~~ts---sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 144 WSKKNGDYKAGYTITA---APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred eecccccccccccccC---CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 765421 11 1111 1110113455543 268899999988887764332110
Q ss_pred -------------eE-EEEEEcCCCCEEEEEeeC--------CCCC----ceEEEEeCCCCceeEEeecccCC-------
Q 001157 543 -------------WC-TMMAYSADGTRLFSCGTS--------KEGE----SHLVEWNESEGAIKRTYSGFRKR------- 589 (1135)
Q Consensus 543 -------------~v-~~~~~s~~~~~l~~~~~~--------~~~~----~~i~~wd~~~~~~~~~~~~~~~~------- 589 (1135)
.+ ..+++.|...+++.+... +.++ ..|.-.|+++|+..-.|+..+..
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 11 134677777777766521 1122 26888899999998887753321
Q ss_pred -ceeEEEEeCCCC---EEEEEecCCeEEEEECCCCeee
Q 001157 590 -SLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 590 -~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
...-+.+..+|+ .++.+..+|.+++.|..+++.+
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111233334665 6777889999999999999886
No 355
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.84 E-value=2.4e-05 Score=52.74 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1135)
+.++.++|+|||..+||..|+++|++|+|+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999974
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.0076 Score=67.09 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=134.3
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccc-c-----------------ccceeecccccc------ccccccc
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-H-----------------KPFKVWDISAAS------MPLQNAL 403 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~-~-----------------~~~~~~~~~~~~------~~~~~~~ 403 (1135)
.|+.+.|+++... |++|...|.|.||.+..++.-. . ..-.+-|+.... .-++..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999764 7789999999999986553322 0 011122332211 1233345
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeec------CCCCeeEEEEec-----CC-CceEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH-----PN-KQLCIV 471 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~-----d~-~~~~l~ 471 (1135)
+....++|++++.| |=-++|+|..+|.+.|.|++....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999997 6669999999999999999887665432 2222 334688898872 22 225788
Q ss_pred EEcCCCcEEEEEcC-C--CeeE----EEecCCCCCeEEEEeccCCC-------------------ccEEEEEEcCCeEEE
Q 001157 472 TCGDDKMIKVWDVV-A--GRKQ----YTFEGHEAPVYSVCPHHKES-------------------IQFIFSTAIDGKIKA 525 (1135)
Q Consensus 472 s~~~d~~i~iwd~~-~--~~~~----~~l~~h~~~v~~l~~~~~~~-------------------~~~l~s~s~dg~i~~ 525 (1135)
.|...|.+.+|.+. . +... .....+.++|..|..-.... -+-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999875 1 2221 12224667777665321111 022445556888999
Q ss_pred EeCCCCCceEEecCCCCeEEEEEEc-----CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC---CceeEEEEe
Q 001157 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~s 597 (1135)
+...+.+...+..........+++- ..+..|++-. .+|.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444222333444453 2344455444 488899999998888877765321 123345667
Q ss_pred CCCCEEEEE
Q 001157 598 TTRNRFLAA 606 (1135)
Q Consensus 598 ~~~~~l~~~ 606 (1135)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 777655444
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.0099 Score=61.16 Aligned_cols=191 Identities=10% Similarity=0.125 Sum_probs=111.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...+..++|.|+.++|+++....+.|...+.. |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999888898888864 66654321 223 346778999888888877
Q ss_pred EeCCCeEEEEEcCCCCc-e--ee--eeEee---cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---CeeEEE--
Q 001157 426 AFSKHIVHLYTYNPTGE-L--RQ--HLEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~-~--~~--~~~~~---~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~-- 492 (1135)
--.++.+.++++..... + .. ...+. .++..+-.++|++.++. |+.+-+.....|+.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76799999999844321 1 11 11111 34567999999999884 44555555666666543 222211
Q ss_pred e------cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---------CeEEEEEEcCCCCEEE
Q 001157 493 F------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1135)
Q Consensus 493 l------~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 557 (1135)
. ......+.+++++|.. +++++.......|..+| ..++.+..+.... .....|+|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1244567889998874 47888888889999998 4455544443332 2578999999997766
Q ss_pred EE
Q 001157 558 SC 559 (1135)
Q Consensus 558 ~~ 559 (1135)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 358
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.79 E-value=2.5e-05 Score=60.51 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.4
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCH
Q 001157 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1135)
Q Consensus 38 ~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~ 90 (1135)
+..++++|+.|+|+.|+..+...........+ .+.|.|++|+|+|++..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999887554322222 49999999999999998764
No 359
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.79 E-value=0.0048 Score=69.57 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=118.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
........+.++|+|+.+++ +.||.-.|+..... +.. ..+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNK-----AFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEE-----EEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---ccc-----ccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 34455789999999999999 56777778874332 211 123456788998664 6777768899997422
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+.+....+.- ...+..|-. |.+|...+ ++.|.+||+.+++.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3332233331 223444432 35555554 448999999999888887754 489999999999999886
Q ss_pred CceEEEEeCCCC-----------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe--eeEEEeCCCCC
Q 001157 566 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGL 632 (1135)
Q Consensus 566 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 632 (1135)
+..+++++.... .....+.... ..|.+.+|..+ .++-.... .++. +-.|+ .+..+.
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld----- 232 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD----- 232 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-----
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-----
Confidence 344777764432 0222222212 26788888866 33333333 6665 33333 233332
Q ss_pred CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.++.-+.+.++.+.+.....|+.+..+.+...
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 24667778887788888999999999987644
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.056 Score=60.82 Aligned_cols=268 Identities=13% Similarity=0.125 Sum_probs=171.2
Q ss_pred CcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeE
Q 001157 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 334 ~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+......+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..
T Consensus 18 ~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~ 78 (381)
T COG3391 18 TGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAG 78 (381)
T ss_pred ecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccc
Confidence 333444444444447788899999965555544333444444331111000 0001134557
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCeeEE
Q 001157 414 CVWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 414 v~~spdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 491 (1135)
+++++++..+. +...+..|.+.|..+........ .+. ....++++++++.++++-.. .++++.+.|..+++.+.
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 88999888544 44556889999977765544221 122 56789999999864433333 47899999999999888
Q ss_pred EecCCCCCeEEEEeccCCCcc-EEEEEEcCCeEEEEeCCCCCceE-E---ecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 492 TFEGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+...-..+ ..+++.|++ . ..++-..++.|.+.|........ . ..........+.++|+|++++..... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~ 230 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGS 230 (381)
T ss_pred EEecCCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCC
Confidence 76544445 788887766 5 44445588999999966554432 0 11223345678999999988766531 224
Q ss_pred ceEEEEeCCCCceeEE-eecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCC
Q 001157 567 SHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+.+...|..++..... +..... ....+..+|+|..++... ..+.+.+-|..+..........
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 6899999988877665 333332 345588999999998874 5588999999888877776543
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0087 Score=67.31 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=141.5
Q ss_pred eeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC---CccEEEEEcccceEe
Q 001157 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 917 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~~ 917 (1135)
...+++++++..+.+.. ++.|.+.|..+.+......-.. ....++++| ++..+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 35688899998666665 6899999988877776665322 667899999 5555544443 789999999999988
Q ss_pred EeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--
Q 001157 918 TKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-- 994 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d-- 994 (1135)
.....-..+ ..++++|+|+.+. +-..++.|.+.|..+..... .... ...........+.++|+|.++.+..+
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~---~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG---SLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc---cccccCCCCceEEECCCCCEEEEEeccC
Confidence 885543344 8899999998554 44578899999977755321 0100 00111134578999999998888432
Q ss_pred --CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEecCCCceeeccC
Q 001157 995 --SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 995 --~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+.+.+.|.....+.......+-. .-..+.++|+|+.+.+... .+.|.+-|..+......+.
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 47888887444443331111112 4556899999999988744 4889999999887776654
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.68 E-value=0.006 Score=62.73 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce-
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~- 915 (1135)
...+..++|.|+.+.|++.. .+.|..++. +|+.++.+.-. .+..-.|++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 44599999999876555554 578888887 47888876543 35678899987 77777766668999999884321
Q ss_pred -----EeEee-----cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC---cccccceeeecCCCCCCCCCCceeEEE
Q 001157 916 -----VKTKL-----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 916 -----~~~~l-----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
....+ ..+...+-+|+|.+.++.|..+-+..-..++.+.. .....................+.++++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11111 13445689999999988877777776667776654 111111111111101111245789999
Q ss_pred CCCCcEEEE-E-ECCcEEEEeccCCcccccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001157 983 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1135)
Q Consensus 983 spdg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~dg~~l~s~~~dg~V~vw 1044 (1135)
+|....|.+ + .+..|..+|.+++.+..+.-..+. -..--.|+|.++|++.+ .++-+..+++
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 998766666 4 356788888766654443322211 23467899999996544 5566665554
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.66 E-value=1.7e-05 Score=86.93 Aligned_cols=202 Identities=15% Similarity=0.217 Sum_probs=129.1
Q ss_pred CeeEEEeecCCC-eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEEE
Q 001157 348 NVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 348 ~V~~~~fspdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la~ 425 (1135)
.+.|++++-+.+ -++++|..+|.|.+-.+....-- ......+|....++++|++ |...||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAa 120 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAA 120 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHh
Confidence 566666655433 58899999999999887643211 1123567888999999999 6778888
Q ss_pred Ee----CCCeEEEEEcCCCCc-eeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eEEEecCCCC
Q 001157 426 AF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1135)
Q Consensus 426 ~~----~dg~i~iwd~~~~~~-~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~h~~ 498 (1135)
|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.++++|++... ....+ ...
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk 196 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NTK 196 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hhh
Confidence 83 366799999988611 011111222 334566889988877 88899999999999987322 12222 223
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEe-CCCCCceEEecCC-C----CeEEEEEEcCCCCEEE-EEeeCCCCCceEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-G----NWCTMMAYSADGTRLF-SCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~ 571 (1135)
.+..+.+.|-. ++++++-. ||.|.+|| ....+.......+ . ..+..++|+|...-++ +... ..++|++
T Consensus 197 ~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 44555555522 25676655 99999999 4433332221111 1 2588999999765443 4432 3678999
Q ss_pred EeCC
Q 001157 572 WNES 575 (1135)
Q Consensus 572 wd~~ 575 (1135)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9875
No 364
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.0092 Score=59.70 Aligned_cols=206 Identities=15% Similarity=0.111 Sum_probs=127.1
Q ss_pred EEEeecCCC-EEEEEe-CCe-EEEEeCCCceEEEEeeCCCCC--eeEEEEeCCCCcEEEEEeCC-----ccEEEEEcccc
Q 001157 845 CIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 914 (1135)
Q Consensus 845 ~l~~s~dg~-~la~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~ 914 (1135)
.++|+|.-. -++.+- -|+ ..++|..+.+...++...++. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 578888554 444554 465 789999988777666543322 22347999 89888765443 78999998854
Q ss_pred -eEeEeecCccCceEEEEEcCCCCeEEEEcC------------------CCcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 915 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------------------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 915 -~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------------------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+.+.++..|.-.-..+.+.+||+.|+.+.. .-++.+.|..+|+.+.+..+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 567778888888889999999999887643 12344555555554443333211111 4
Q ss_pred CceeEEECCCCcEEEEEE-CCc-------EEEEeccCCcccccCCCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001157 976 GETKVQFHNDQTHLLVVH-ESQ-------ISVYDSKLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIG 1042 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~~-d~~-------i~vwd~~~~~~~~~~~~~----~h~~~i~~~~~s~dg~~l~s~~-~dg~V~ 1042 (1135)
.+..++..+||+.++.+. .|. |-... .++.+..+.... .-..-|-+++...+..+++..+ .-++..
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc-CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 678888899998877742 110 11111 222222111110 0134567788876666665544 455678
Q ss_pred EEecCCCceeeccC
Q 001157 1043 VFDAETLRFRCRIG 1056 (1135)
Q Consensus 1043 vwd~~~~~~~~~~~ 1056 (1135)
+||..+|..+..-.
T Consensus 306 i~da~tG~vv~~a~ 319 (366)
T COG3490 306 IWDAATGAVVSEAA 319 (366)
T ss_pred EEEcCCCcEEeccc
Confidence 89999999876544
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.0053 Score=72.16 Aligned_cols=188 Identities=11% Similarity=0.069 Sum_probs=108.2
Q ss_pred CCeeEEEeecCCCEEEEEe-------CC--eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--------
Q 001157 841 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 903 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d-------- 903 (1135)
..+.+.++||||+.+|... |+ .|.+++... .. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999887664 32 466666532 22 33321 22488899999 77766666432
Q ss_pred ----ccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEE---EeCCCcccccceeeecCCCCCCCCCC
Q 001157 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1135)
Q Consensus 904 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+.+++.++..++... ...+.|..+.|||||+.++... ++.|++ -....|+...........+-. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2345799999999999888765 467777 443444311111111111111 23
Q ss_pred ceeEEECCCCcEEEEEECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001157 977 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 977 v~~~~fspdg~~l~~~~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~ 1042 (1135)
+..+.|..++++++...++...+|.+ .+.....+ .......++.+++-+++ .++....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 57899999999765554444455655 44443321 22223567888887763 455556666443
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.47 E-value=0.11 Score=59.02 Aligned_cols=231 Identities=13% Similarity=0.042 Sum_probs=113.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee---eeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~---~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+.|.++.|+.+.. |++...||.+++||+....... ......-....+.+..+..+|- .++++ ++.+.+-.-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7899999998654 5566699999999987433000 0001111112233333433442 33333 3444433221
Q ss_pred CCe-eEEEe---cCCCC------CeEE-EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 486 AGR-KQYTF---EGHEA------PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~-~~~~l---~~h~~------~v~~-l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
... ..+.+ .+... .... ..++ .+....+....++.+.+.+-..... ....+++..++.||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~--~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS--SDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEee--cCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 111 11111 11000 0000 1122 2224455555556666443222111 11246899999999999
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+++.-.. ++.+.+.+..-.+....+..........+.|..+...++.- ...+.+.....
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--------------- 288 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG--------------- 288 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC---------------
Confidence 9987763 67788888766666666666544355566666543322222 22333332111
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 674 (1135)
..+.|.-++..++..--|| +||+....- +.++.+...
T Consensus 289 -~~~~~~~~~~~~l~~E~DG-~riit~~~~-~~l~~Vp~~ 325 (410)
T PF04841_consen 289 -DSISFWYDGPVILVSEIDG-VRIITSTSH-EFLQRVPDS 325 (410)
T ss_pred -CceEEeccCceEEeccCCc-eEEEeCCce-EEEEECCHH
Confidence 2244544555444444454 788765444 455554443
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.47 E-value=0.096 Score=56.38 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=133.9
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-----
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----- 492 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----- 492 (1135)
..++.|+.|..+| +.+++......... . .+...|..+...++-+ .++.-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3678999999998 89999843332221 1 1333499999999887 444444 59999999875433321
Q ss_pred ---------ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-----CceEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 493 ---------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 493 ---------l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
-......+...+......+...+.....++|.+|.+... .....+.. ...+.+++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 011233444444112223345555566669998887653 22233333 3577888888 566666
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccC-----------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--E
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T 625 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 625 (1135)
+. .....+.|+.++.....+..... .++..+.. +++.+|++- +..-.+-|. .|+... .
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 64 33488899987766544422211 12333333 345666653 333333333 343333 3
Q ss_pred EeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcc
Q 001157 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
+.... .+.++++. ..+|+..+. +.|.||++.++ ++.+.+....
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 33322 34566664 457776655 56999999999 7888876554
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.063 Score=54.02 Aligned_cols=249 Identities=12% Similarity=0.160 Sum_probs=143.3
Q ss_pred eeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCc-EEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++++..+.-...-..++|+|.-++-++.+-.-|+ ..++|..+++...... .....-+.+|. .
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------v 120 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------V 120 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------c
Confidence 4455545445566778999988767777776665 5788988877654210 00111144554 6
Q ss_pred EcCCCCEEEEEeC-----CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC---------------
Q 001157 416 WGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------------- 475 (1135)
Q Consensus 416 ~spdg~~la~~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--------------- 475 (1135)
|||||.+|...-. .|.|-|||...+ +...-++..|.-.-..+.|.+||+ .++.+..
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccch
Confidence 9999999988744 377999999843 444557778888888999999999 4444321
Q ss_pred ---CCcEEEEEcCCCeeEEE--ec--CCCCCeEEEEeccCCCccEEEEEEcCCe-----EEEEeCCCCCceEEecCC---
Q 001157 476 ---DKMIKVWDVVAGRKQYT--FE--GHEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAP--- 540 (1135)
Q Consensus 476 ---d~~i~iwd~~~~~~~~~--l~--~h~~~v~~l~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~--- 540 (1135)
.-++.+.|..+|..+.+ +. -+.-.|..++..++ |..++.+-..|. -.+=-...++....+...
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~ 274 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQ 274 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHH
Confidence 11345556566665532 22 23445556655333 233332221111 000001112222222221
Q ss_pred ----CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 541 ----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 541 ----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
.+.|-+++.+.+..+++..+. ..+...+||..+|..+..-.... ... ..+...-++..+.+|.+.++.
T Consensus 275 ~~~~anYigsiA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~d---aaG--va~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 275 TAAFANYIGSIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALPD---AAG--VAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHHhhhhheeecccCCeEEEecC---CCCeEEEEEcCCCcEEecccccc---ccc--ceeccCceEEecCCceEEecc
Confidence 235677888777777766554 35568899999998876544321 122 233344466666788888774
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.035 Score=59.39 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=124.2
Q ss_pred EEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec--
Q 001157 846 IALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-- 921 (1135)
Q Consensus 846 l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-- 921 (1135)
-.|.++...|.-.. .+.|.-|+..+++. ..+..+ +.+.++..-. .+..|+++ .. -+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 34667777666665 68899999886643 333322 3334444433 33344433 23 37777776665533221
Q ss_pred --Cc-cCceEEEEEcCCCCeEEEEcC-----C----CcEEEEeCC-CcccccceeeecCCCCCCCCCCceeEEECCCCcE
Q 001157 922 --GH-QNRITGLAFSPTLNALVSSGA-----D----AQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1135)
Q Consensus 922 --~h-~~~i~~l~~s~d~~~l~s~~~-----D----~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1135)
+. ...-..+...|+|.+.++.-. . ..-.+|-+. .+.. .+...++. .....++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCE
Confidence 11 134557788899988776544 1 111344444 2221 11111111 23468999999998
Q ss_pred EEEEE--CCcEEEEeccC---Ccccc--cCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEecCCCceeeccCCCcc
Q 001157 989 LLVVH--ESQISVYDSKL---ECSRS--WSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAY 1060 (1135)
Q Consensus 989 l~~~~--d~~i~vwd~~~---~~~~~--~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg-~V~vwd~~~~~~~~~~~~~~~ 1060 (1135)
+..+. .+.|..|+... ..-.. +.......+.--.++...+|.+-+++..+| .|.+|+-+ |+++..+..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~- 254 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV- 254 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence 88854 47777776631 11111 111112245666778888888776555554 89999999 99998887442
Q ss_pred cCccccCCCCCCcEEEeeCCCCCCEEEEEe
Q 001157 1061 IPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~ 1090 (1135)
..+++++|--.+.+.|...+
T Consensus 255 ----------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 255 ----------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ----------CCCccceEeCCCcCEEEEEe
Confidence 45566777543445554444
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.36 E-value=0.14 Score=59.06 Aligned_cols=245 Identities=11% Similarity=0.116 Sum_probs=128.1
Q ss_pred CeeEEEEcCCCCEEEEE-eCCC----eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC---------
Q 001157 410 SVNRCVWGPDGLMLGVA-FSKH----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--------- 475 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~-~~dg----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--------- 475 (1135)
.+....+||||+++|.+ +..| .++++|+.+|+.+.. .+..- ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 34468899999999976 3333 599999999865542 11111 1223999999985 3344322
Q ss_pred -CCcEEEEEcCCCeeE--EEecCCCCC--eEEEEeccCCCccEEEEEEc-C---CeEEEEeCCCC----CceEEecCC-C
Q 001157 476 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDYDAP-G 541 (1135)
Q Consensus 476 -d~~i~iwd~~~~~~~--~~l~~h~~~--v~~l~~~~~~~~~~l~s~s~-d---g~i~~wd~~~~----~~~~~~~~~-~ 541 (1135)
...|+.|.+.++... ..+...... ...+..+. ++++++..+. . ..+.+.|+... .....+... .
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 234788888776432 344443333 44556655 4467654432 2 34677777664 222333222 2
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce---eEEeecccCCceeEEEEeCCCCEEEEEe-cC--CeEEEE
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DE--FQIKFW 615 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d--g~i~iw 615 (1135)
+....+... +..++..+..+...+.|...++..... ...+..+.. .+.-..+...+++|+... .+ ..|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333333333 444433333334567788888877652 324444433 233333444455666543 33 358889
Q ss_pred ECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE--eC--CCcEEEEECCCcc
Q 001157 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT--TS--DNGIKILANSDGV 665 (1135)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~--dg~v~iw~~~~~~ 665 (1135)
++..+.....+..... ..|..+...+++..+... +. -+++..||+.+++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9985555555654432 234444444555544322 22 4578888888773
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.34 E-value=0.00012 Score=80.54 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=132.0
Q ss_pred CeeEEEEeCC-CCcEEEEEeCCccEEEEEcccceE--eEeecCccCceEEEEEcCC-CCeEEEEc----CCCcEEEEeCC
Q 001157 883 AATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPT-LNALVSSG----ADAQLCMWSID 954 (1135)
Q Consensus 883 ~v~~l~~sp~-~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l~~s~d-~~~l~s~~----~D~~i~iWd~~ 954 (1135)
.+.|+++.-+ +..++++|..+|.|-+-.+....- -....+|....++++|++- ..+||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4556655542 346889999999999887654321 2345678888999999875 35666653 45679999999
Q ss_pred Ccc--cccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc-CCC
Q 001157 955 KWE--KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC-DGL 1030 (1135)
Q Consensus 955 ~~~--~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~-dg~ 1030 (1135)
++- ......+.. + .......++|-.|.+.+.+| ..+.+.++|+...+....... ...+..+..+| .+.
T Consensus 138 s~ltvPke~~~fs~--~---~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS--S---TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPN 209 (783)
T ss_pred cccCCCcccccccc--c---cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCC
Confidence 852 111111111 1 12455688888888888885 567899999944433322222 34567778888 778
Q ss_pred EEEEEecCCcEEEEec-CCC-ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEecC
Q 001157 1031 LVYAGFCDGAIGVFDA-ETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~~ 1101 (1135)
++++-. ||.|.+||. .+- .++..+... .......++.++|.|....++++.+.| ++|+++++.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~-------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRN-------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhC-------CCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 888766 999999993 332 222222111 111123589999999877788888877 699999985
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.31 E-value=0.14 Score=55.04 Aligned_cols=229 Identities=14% Similarity=0.082 Sum_probs=129.1
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001157 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd 436 (1135)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+++++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 344 577788888 89999832221110 11333499999999888777764 49999999
Q ss_pred cCCCCceeeeeE-----------eecCCCCeeEEE--EecCCCceEEEEEcCCCcEEEEEcCCC-----eeEEEecCCCC
Q 001157 437 YNPTGELRQHLE-----------IDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (1135)
Q Consensus 437 ~~~~~~~~~~~~-----------~~~h~~~v~~l~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~l~~h~~ 498 (1135)
+..-........ .......+...+ =...+.. .|+.+ ..+.|.+|..... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876443221000 011222344444 1123332 44444 3558888887653 3445554 457
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC------------CeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+.+++|.. +.++.|..+ ...+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788898873 466666644 47778888665544332211 12333333 345566543 2
Q ss_pred ceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
..-...| ..|+..+ .+.-.. ....+++. ..++++.+. +.|.||++.++++++++...
T Consensus 208 ~~g~fv~-~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVN-KNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEc-CCCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 2223333 3454443 222222 34445553 457877665 55999999999999998754
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.30 E-value=0.041 Score=64.84 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=109.8
Q ss_pred CCeeEEEEeCCCCcEEEEEe------CCc--cEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC-CcEEEE-
Q 001157 882 PAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMW- 951 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~iW- 951 (1135)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777766654 244 4555554 23322223332 37888999999888777532 222222
Q ss_pred ----------eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec---cCCcccc--cC-CCCC
Q 001157 952 ----------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRS--WS-PKDA 1015 (1135)
Q Consensus 952 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~---~~~~~~~--~~-~~~~ 1015 (1135)
+++.++... . ....|..+.|||||++++...++.|.+--+ ....... .. ...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----~------~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----R------VPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh-----c------cCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence 333322110 0 114699999999999999966788877433 2222111 00 0111
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEecCC-CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCc
Q 001157 1016 LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1016 h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~ 1094 (1135)
-...+.++.|..+++++ ++..++...+|.+.- |.....+ +.. .....+..++-++ + .|..+..+|.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~------~~~---n~~~~v~~vaa~~-~--~iyv~~~~g~ 561 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL------PSR---NLSAPVVAVAASP-S--TVYVTDARAV 561 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc------CCC---CccCceEEEecCC-c--eEEEEcCCce
Confidence 23446889999999965 555555555555432 2221111 110 1235667777665 2 4555566664
Q ss_pred EEEEecCCCccccCCC
Q 001157 1095 VHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1095 i~lW~~~~~~~~~~~~ 1110 (1135)
+.+=.-.++...|..-
T Consensus 562 ~~l~~~~~~~~~W~ev 577 (591)
T PRK13616 562 LQLPNSDSGDQYWREV 577 (591)
T ss_pred EEecCCCCCCCCceEC
Confidence 4433223334566643
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.035 Score=61.20 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=121.2
Q ss_pred CeEEEEeCCCceEEEEeeCC-CCCeeEEE---EeCC---CCcEEEEEeC----------CccEEEEEcccc----eEeEe
Q 001157 861 GKVSLFNMMTFKVMTMFMSP-PPAATFLA---FHPQ---DNNIIAIGME----------DSSVQIYNVRVD----EVKTK 919 (1135)
Q Consensus 861 g~i~iwd~~~~~~~~~~~~~-~~~v~~l~---~sp~---~~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 919 (1135)
..|++.|..+.+.+.++.-. ...+++++ |..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46889998888877665432 33455444 3321 1578888763 289999999884 12222
Q ss_pred e--cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc-cccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CC
Q 001157 920 L--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE-KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ES 995 (1135)
Q Consensus 920 l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~ 995 (1135)
+ ....++|++++-- +++++++. .+.|.+|++...+ ......... . ..+.++. ..+.++++++ .+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~-~------~~i~sl~--~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDS-P------FYITSLS--VFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-B-S------SSEEEEE--EETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecc-e------EEEEEEe--ccccEEEEEEccc
Confidence 1 2356789998866 44444444 4679999999877 222211111 1 1234443 3356787765 56
Q ss_pred cEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCc
Q 001157 996 QISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1073 (1135)
Q Consensus 996 ~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
.+.++.. ....+..... ......++++.|-+|++.++++..+|.|.++..+.......-.......... ......+
T Consensus 150 sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~-f~lg~~v 227 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISS-FHLGDIV 227 (321)
T ss_dssp SEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEE-EE-SS-E
T ss_pred CEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEE-EECCCcc
Confidence 7777654 3333332221 2225568899998777889999999999999987321100000000001111 1222556
Q ss_pred EEE---eeCCC--CCC-----EEEEEecCCcEEEEe
Q 001157 1074 LVI---APHPS--EPN-----QIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1074 ~~~---~~sp~--~~~-----~l~s~~~Dg~i~lW~ 1099 (1135)
+++ ...|. +.. .++-++.+|.|...-
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 666 44441 222 488899999998443
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.22 E-value=0.019 Score=68.46 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=99.8
Q ss_pred CCcEEEEE-eCCccEEEEEcccceEeEeecCccCc-eEEEEEcCCC-------CeEEEEcCCCcEEEEeCCCccccccee
Q 001157 893 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTL-------NALVSSGADAQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 893 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~-------~~l~s~~~D~~i~iWd~~~~~~~~~~~ 963 (1135)
+..+|+.- .....|+-.|+++|+.+..+..|... |.. +.|+. .-...|-.+..+..||.+-.. ..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44554443 35678999999999999999988764 544 44432 234556667789999998532 111
Q ss_pred eecCCCCC-CCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001157 964 IQAPAGRQ-SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 964 ~~~~~~~~-~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~ 1042 (1135)
+.. ..+. ......++++-+.+|..++.+.+|.|++||-.+...+...++ -+.+|..|..+.||++|++.+ +..+.
T Consensus 567 v~~-~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 567 VDS-QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred eec-cccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEE
Confidence 111 1110 111456788888888877778899999999854444444433 378999999999999988655 67888
Q ss_pred EEecC
Q 001157 1043 VFDAE 1047 (1135)
Q Consensus 1043 vwd~~ 1047 (1135)
+++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88863
No 376
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0027 Score=66.85 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHH
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~ 75 (1135)
+.|..+|..++...|....+..|-+|+|...+ +.++-+++.+|+-.-|++.+..-...-... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 34689999999999999999999999998762 677888899999999988887643221111 2248899
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHHhh
Q 001157 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLL 119 (1135)
Q Consensus 76 l~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~~l 119 (1135)
|..+.|++++..|... +|+.+.|+.++|+...+..+.+.|...|
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 9999999999999988 9999999999999776666666664443
No 377
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=97.16 E-value=0.001 Score=61.45 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=68.0
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++. .++|+++.++||||+..|+..+|..|+++.-..+...+.++.++|+.+....++.+++....+++ ++.+
T Consensus 25 EL~-~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELS-QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 444 49999999999999999999999999998877776668899999999999999988887766655 3555
Q ss_pred HHHHHHHHHh
Q 001157 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 5677777766
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.16 E-value=0.053 Score=59.79 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=103.4
Q ss_pred cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC----CCEEEEEeC----------CCeEEEE
Q 001157 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS----------KHIVHLY 435 (1135)
Q Consensus 370 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~la~~~~----------dg~i~iw 435 (1135)
.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..++++|.. .|.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5777777776655432221 0112222333444433 467777743 2899999
Q ss_pred EcCCC----CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-eEEE-ecCCCCCeEEEEeccCC
Q 001157 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYT-FEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 436 d~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~-l~~h~~~v~~l~~~~~~ 509 (1135)
++... ..++..... ...++|++++-- ++ .|+.+. .+.|.+|++...+ .+.. +......+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHST-EVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEEE-EESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEEE-eecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99984 233332222 357889998876 33 344333 4799999998877 4432 22233466666553 3
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCc-eE--EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
++++.|...+.+.++.++.... .. .-.....+++++.|-++++.++.+ |.++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~----D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG----DKDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE----ETTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE----cCCCeEEEEEEC
Confidence 6899999888888886654332 22 223345578999998777766655 357778887654
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.17 Score=54.36 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=135.9
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg 430 (1135)
+..|.|++..++.+.-..+.|.-|+..+++... + .+.+.+.++..-.++..|+++ ..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~-~~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIAC-EHG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEE-ccc
Confidence 345778887777777788899999988764321 1 133344555554455555554 233
Q ss_pred eEEEEEcCCCCceeeeeEee-cC-CCCeeEEEEecCCCceEEEEEcC------C---CcEEEEEcC-CCeeEEEecCCCC
Q 001157 431 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGD------D---KMIKVWDVV-AGRKQYTFEGHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~l~~h~~ 498 (1135)
+.+++.+++.......... +. ...-+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-.
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 5667766554422221211 11 23567888899998 3332222 1 112355444 5777777766666
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-----CCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.-+.|+|+|++. .+.++=+..+.|.-|++.. ... ...+....+..-.++...+|.+-+++.. +.+.|..
T Consensus 164 ~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 164 IPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred ecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 778999999773 3444445568888887762 111 1223334456667788888888764432 2247999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEe
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1135)
|+.. |+++..+..... .+.+++|- ++.+.|+..+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9988 999998887754 56777775 4455555544
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.08 E-value=0.29 Score=54.42 Aligned_cols=86 Identities=12% Similarity=0.196 Sum_probs=62.6
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC-----------------CE
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NR 602 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------~~ 602 (1135)
....+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+ .+
T Consensus 306 ~~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred CCceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34468899999998877764 5688999999999999999998876443333222221 12
Q ss_pred EEE-EecCCeEEEEECCCCeeeEEEeCC
Q 001157 603 FLA-AGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 603 l~~-~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|+. +-.-|.|.||.++.|..+..+...
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 333 557899999999999888877643
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0024 Score=70.91 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=78.2
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceE-EEEEcCCCCeEEEEcCCCcEEEEeCCCccccc
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1135)
-.|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 88999999999999999988 888899987877787 99999999999999999999999999988654
Q ss_pred ceeeecCCCCCCCCCCceeEEECC
Q 001157 961 SRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
..... . ...|.++.|++
T Consensus 99 ~~~~s----~---e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS----V---ETDISKGIWDR 115 (665)
T ss_pred ccccc----c---ccchheeeccc
Confidence 43111 1 14677777763
No 382
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=96.98 E-value=0.0014 Score=61.41 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=62.1
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|++|.|+||+|+..|+..+|..|+.+....+...+.+++++|..+....++.+++....++. ++.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4444 9999999999999999999999999999888777777888999998888888877666655544 3455
Q ss_pred HHHHHHHHHh
Q 001157 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5666666654
No 383
>PRK10115 protease 2; Provisional
Probab=96.94 E-value=1.4 Score=53.89 Aligned_cols=243 Identities=9% Similarity=0.023 Sum_probs=121.0
Q ss_pred CeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcE
Q 001157 410 SVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMI 479 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i 479 (1135)
.+..+.|||||++||.+.+. ..|++.|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 46678899999999887442 3588999988763321 1211 1 146999999985 33333222 478
Q ss_pred EEEEcCCC--eeEEEecCCCCCeEEEEeccCCCccEEEEEEc---CCeEEEEeCCC--CCceEEecCCCCeEEEEEEcCC
Q 001157 480 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 480 ~iwd~~~~--~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~---dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~ 552 (1135)
+.|++.++ +....+........-..+. ..++.+++..+. ++.+.+++.+. +.....+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88898887 3333444333333312222 224455544433 35688888532 332222332333323322 22
Q ss_pred CCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecc-cCCceeEEEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCC
Q 001157 553 GTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDAD 629 (1135)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 629 (1135)
+..++..+..+.....|...++. .++. ..+-.+ .+..+..+.+.. +..+++...+|.-+++-+.. +..+..+...
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~ 356 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFD 356 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCC
Confidence 34444333222234445555655 2332 233333 333677777773 33444555666655554432 2233433311
Q ss_pred CCCCCcCeEEEe--cCCC-EEEEEeC---CCcEEEEECCCc
Q 001157 630 GGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s--~~~~-~l~~~~~---dg~v~iw~~~~~ 664 (1135)
.. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 357 DP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 112222333 3333 4433332 467778887765
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.93 E-value=0.0023 Score=43.99 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1135)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.85 E-value=0.2 Score=51.23 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=117.1
Q ss_pred CeeEEEeecCCCEEEEEe-CC--eEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 842 SAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
-.-.+.|..+|.++-+.+ -| .|+.+|+.+++.+....-.. ----.++... +++..-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345688888888877776 44 59999999999876655332 2234455554 345545557889999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
.++.- .+.=.+|+ .|++.|+.......|+++|.++.+.....
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i----------------------------------- 165 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI----------------------------------- 165 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE-----------------------------------
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE-----------------------------------
Confidence 88863 35567777 46766666666777999998876532211
Q ss_pred EEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcccc----CCCCCCc
Q 001157 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV----SSNTAHP 1073 (1135)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 1073 (1135)
.|.+ .+.. -..++-+.+- +|...|=.-....|...|..+|+....+......+.... .....-.
T Consensus 166 ~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 166 QVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp E-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 1111 0011 1224445553 676666665666788888888888876654433221100 0113445
Q ss_pred EEEeeCCCCCCEEEEEe
Q 001157 1074 LVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1074 ~~~~~sp~~~~~l~s~~ 1090 (1135)
-.++|.|..++++++|-
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 67999997777777774
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.85 E-value=0.24 Score=52.68 Aligned_cols=159 Identities=12% Similarity=0.116 Sum_probs=83.3
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe-CCCcc
Q 001157 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWE 957 (1135)
Q Consensus 879 ~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~~ 957 (1135)
...+.+..+..++ ++++++++..-....-||--...-...-+.-..+|..|.|+|++.+.+.+ ..|.|++=+ ....+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3456788899999 89988877555555577744221222223345789999999998876654 788888777 22222
Q ss_pred cccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEec
Q 001157 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~ 1037 (1135)
.-....... ......+..++|.+++...+++..|.+.+=.=.++.-..-.........+..|.|.++.+-++.| .
T Consensus 220 ~w~~~~~~~----~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 220 TWSEPIIPI----KTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EE---B-TT----SS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred ccccccCCc----ccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 111101111 01114578999999999998888886655333444433333222335678899998776666655 5
Q ss_pred CCcEEEE
Q 001157 1038 DGAIGVF 1044 (1135)
Q Consensus 1038 dg~V~vw 1044 (1135)
+|.|--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877554
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.84 E-value=0.41 Score=52.73 Aligned_cols=244 Identities=16% Similarity=0.151 Sum_probs=121.9
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCCceE---EEEee----CCCCCeeEEEEeCC---CCcEEEEEeCC--------
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMFM----SPPPAATFLAFHPQ---DNNIIAIGMED-------- 903 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~~lasg~~d-------- 903 (1135)
..++|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988876699999999 44443 22221 22345789999992 24444444321
Q ss_pred ccEEEEEcccc-------eEe-EeecC---ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeec-CCCC-
Q 001157 904 SSVQIYNVRVD-------EVK-TKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGR- 970 (1135)
Q Consensus 904 g~v~iwd~~~~-------~~~-~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~-~~~~- 970 (1135)
..|.-|.+..+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. --..+........+++. ..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCSTTSSTTEEEEEETTSSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccccccccceEEEecccCcC
Confidence 23444444433 111 12222 1223456999999988887765443 00000000000111110 1110
Q ss_pred ------------CC-----CCCCceeEEECCC-CcEEEE--EECCcEEEEec-cCCc------c-----c-----ccCC-
Q 001157 971 ------------QS-----PLVGETKVQFHND-QTHLLV--VHESQISVYDS-KLEC------S-----R-----SWSP- 1012 (1135)
Q Consensus 971 ------------~~-----~~~~v~~~~fspd-g~~l~~--~~d~~i~vwd~-~~~~------~-----~-----~~~~- 1012 (1135)
.. .......++|.|. |.+.++ +.+..=.|.-+ .+.. . . ....
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00 0123468999999 777766 33333333222 1110 0 0 0000
Q ss_pred --------CCCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEe
Q 001157 1013 --------KDALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA 1077 (1135)
Q Consensus 1013 --------~~~h~~~i~~~~~s~-------dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
...+...++.+.|-. +|.++++.-..+.|....++.+..+.... .........++.++
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE-------EFLGGFGGRPRDVA 312 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE-------EECTTSSS-EEEEE
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE-------EccccCCCCceEEE
Confidence 012235566666652 56677776667788888887553332211 11124445789999
Q ss_pred eCCCCCCEEEEEecCCcEE
Q 001157 1078 PHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1078 ~sp~~~~~l~s~~~Dg~i~ 1096 (1135)
+.| ||.+.++...+|+|.
T Consensus 313 ~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EET-TSEEEEEE-TTTTEE
T ss_pred EcC-CCeEEEEECCCCeEe
Confidence 999 788888888888874
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.81 E-value=0.12 Score=57.33 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=61.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EEcCCCC---cee---eeeEeecCC--CCeeEEEEec-----------CCCceEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHL---YTYNPTG---ELR---QHLEIDAHV--GGVNDIAFAH-----------PNKQLCI 470 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~i---wd~~~~~---~~~---~~~~~~~h~--~~v~~l~~s~-----------d~~~~~l 470 (1135)
+++.+|+++.||.+..+..+.+ |+..... ... -...+. +. ..|+++.+-| |.. .+
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~-~~~~e~ITsi~clpl~s~~~s~~~~dw~--~I 82 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLD-DEPGECITSILCLPLSSQKRSTGGPDWT--CI 82 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeecc-CCCCCEEEEEEEEEeecccccCCCCCcE--EE
Confidence 5788999999999988877666 5442211 111 011111 22 4677776644 334 89
Q ss_pred EEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 471 ~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
+.|..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus 83 ~VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 83 AVGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999999 68887766556899999987643
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.29 Score=50.11 Aligned_cols=172 Identities=9% Similarity=0.114 Sum_probs=112.0
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee--cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
.+....+.+++|+| +.+.|.+......-.||=..+|+.+.++ .+..+ .-++.+.-+|++.++-=.++.+.+..+..
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455699999999 6777777777777777777789988875 34333 34678888888988888899999988876
Q ss_pred ccccc-----ceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC-cEEEEeccCC--cccccCCCCCC-------CCCe
Q 001157 956 WEKLK-----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES-QISVYDSKLE--CSRSWSPKDAL-------PAPI 1020 (1135)
Q Consensus 956 ~~~~~-----~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~-~i~vwd~~~~--~~~~~~~~~~h-------~~~i 1020 (1135)
..... ...+....... .+...++|.|.++.|.++.+. -+.||.++.. .+..-. ...+ -..|
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N---~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-~~~~~~~~~~f~~Dv 235 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKN---KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA-SLDPTADRDLFVLDV 235 (316)
T ss_pred CccEEeccceEEeccccCCCC---cCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc-ccCcccccceEeecc
Confidence 52111 11122222212 466799999999999997654 4666666321 111111 1111 2346
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 1021 SSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1021 ~~~~~s~-dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
+++.|.+ .+.+|+.+.+++.+...|.. |+.+..+.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 6777775 56778888888888888887 45455544
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.028 Score=61.39 Aligned_cols=146 Identities=13% Similarity=0.079 Sum_probs=101.3
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCe--E-----EEEcCCCcEEEEeCCCcccccceeeecC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA--L-----VSSGADAQLCMWSIDKWEKLKSRFIQAP 967 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~--l-----~s~~~D~~i~iWd~~~~~~~~~~~~~~~ 967 (1135)
-+|.++.....++--|++.|+.+....-|.+ |.-+.+.|+.+. | +.|-.|..|.-||..-...- .+...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence 3445566667799999999999999998877 788888888642 2 23456788999998743321 22222
Q ss_pred CCCCC-CCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 968 AGRQS-PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 968 ~~~~~-~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
.+|.- ......|.+-..+|..++.+.+|.|++||-.+...+...++. ..+|+.|..+.||++|+..+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22221 113456777777887666688999999998555555544433 88999999999999987554 677777776
Q ss_pred C
Q 001157 1047 E 1047 (1135)
Q Consensus 1047 ~ 1047 (1135)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 391
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0067 Score=67.48 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=77.6
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCee-EEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
...+.-+.|+|.-.++|.+. +|.|.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55678899999999999998 8999999988 788888887887777 999999 8999999999999999999998876
Q ss_pred Eee-cCccCceEEEEEc
Q 001157 918 TKL-KGHQNRITGLAFS 933 (1135)
Q Consensus 918 ~~l-~~h~~~i~~l~~s 933 (1135)
..+ ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 652 2234557777775
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.67 E-value=0.074 Score=59.31 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=93.5
Q ss_pred CCCeeEEEEeCCCCcEEEEEe--CCccEEEEEcccceEeEeecCccCceEEEEEcCCC----CeEEEEcCCCcEEEEeCC
Q 001157 881 PPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL----NALVSSGADAQLCMWSID 954 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~----~~l~s~~~D~~i~iWd~~ 954 (1135)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|+ .|.+++|+|-+ ..|...-....|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 46789999986 666666543 334433322 23444443 48999999864 346667778889999986
Q ss_pred C--cccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCC
Q 001157 955 K--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG 1029 (1135)
Q Consensus 955 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg 1029 (1135)
. .+..+..+-+.-+-......-..++.|+|....|++ +....=.++++ ....++.=... .+.|-+.+|..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 2 221111111111111111123468899999999998 33333344555 33333322222 6789999999999
Q ss_pred CEEEEE-ecCCcEEEEecCCC
Q 001157 1030 LLVYAG-FCDGAIGVFDAETL 1049 (1135)
Q Consensus 1030 ~~l~s~-~~dg~V~vwd~~~~ 1049 (1135)
+.|+++ +..=.-+|||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 987755 33445789987644
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.66 E-value=0.25 Score=51.94 Aligned_cols=145 Identities=16% Similarity=0.134 Sum_probs=90.0
Q ss_pred CCeeEEEeecCCCEEEEEe--CCe--EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE-cccce
Q 001157 841 ESAACIALSKNDSYVMSAS--GGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 915 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s--dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 915 (1135)
..+.+.++|+||+.+|... ++. +.++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887766 444 5555543 3223322 233788889999 677777777677777774 33333
Q ss_pred EeE-ee--cCccCceEEEEEcCCCCeEEEEc---CCCcEEEEeCCCcccccce----eeecCCCCCCCCCCceeEEECCC
Q 001157 916 VKT-KL--KGHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKLKSR----FIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 916 ~~~-~l--~~h~~~i~~l~~s~d~~~l~s~~---~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
... .+ ..-...|+.+.+||||..+|... .++.|.+=-+.....-... ........ ...+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCC
Confidence 221 11 11112899999999999877554 4577777766532221011 11111111 157889999999
Q ss_pred CcEEEEE
Q 001157 986 QTHLLVV 992 (1135)
Q Consensus 986 g~~l~~~ 992 (1135)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.61 E-value=0.72 Score=48.48 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=89.6
Q ss_pred CeeEEEEeCCCCcEEEEEe-CC--ccEEEEEcccceEeEe-ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEe-CCCcc
Q 001157 883 AATFLAFHPQDNNIIAIGM-ED--SSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWE 957 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~-~d--g~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~~ 957 (1135)
.+.+.++++ ++..+|... .+ ..++++. .+..... +.+. .++...|++++...+....+...+++. ..+++
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 666665554 23 3455554 3333333 2333 688889999988777777677677774 33333
Q ss_pred cccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE----CCcEEEEec--cCCc-cccc----CCCCCCCCCeEEEEEc
Q 001157 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS--KLEC-SRSW----SPKDALPAPISSAIYS 1026 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~i~vwd~--~~~~-~~~~----~~~~~h~~~i~~~~~s 1026 (1135)
.. ...+...... ..|..+.+||||..++... ++.|.|--+ .... ...+ .........+++++|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 21 1112211110 1689999999999999833 577877766 1111 1111 1111225689999999
Q ss_pred cCCCEEEEEecCCc
Q 001157 1027 CDGLLVYAGFCDGA 1040 (1135)
Q Consensus 1027 ~dg~~l~s~~~dg~ 1040 (1135)
+++++++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998877655443
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=0.65 Score=50.81 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=107.4
Q ss_pred Ccceeeeec-ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--
Q 001157 783 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 859 (1135)
Q Consensus 783 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-- 859 (1135)
+.++|++.+ ..+.|.|.|+.+....|.-..+.. ..++.... + -.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe---------~~ev~~k~--g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIE---------PEEVFEKT--G----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE----------HHHHHHHH-------EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeC---------HHHHHhhc--C----CCCCceeeecCCccEEEEeccC
Confidence 456676666 568899999876544332111100 00000000 0 01111233347898888762
Q ss_pred -C----CeEEEEeCCCceEEEEeeCCCC---CeeEEEEeCCCCcEEEEEeC--------------------CccEEEEEc
Q 001157 860 -G----GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGME--------------------DSSVQIYNV 911 (1135)
Q Consensus 860 -d----g~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasg~~--------------------dg~v~iwd~ 911 (1135)
+ |.+.++|-++.+.......... --..+-|.| ..+.++|..+ -.++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 5699999999888887765332 245677788 6777776542 357999999
Q ss_pred ccceEeEeecCcc--CceEEEEEcCCC--Ce-EEEEcCCCcEEEEeC-CCcccccceeeecCCC----CCC---------
Q 001157 912 RVDEVKTKLKGHQ--NRITGLAFSPTL--NA-LVSSGADAQLCMWSI-DKWEKLKSRFIQAPAG----RQS--------- 972 (1135)
Q Consensus 912 ~~~~~~~~l~~h~--~~i~~l~~s~d~--~~-l~s~~~D~~i~iWd~-~~~~~~~~~~~~~~~~----~~~--------- 972 (1135)
.+.+.++++.--. .....|.|..+- .+ ++.+.-..+|..|-- +.++-....++..... -..
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999999876432 235677776553 33 333334444544433 4333222223332221 100
Q ss_pred CCCCceeEEECCCCcEEEEEE--CCcEEEEec-cC---CcccccC-CC------------CCCCCCeEEEEEccCCCEEE
Q 001157 973 PLVGETKVQFHNDQTHLLVVH--ESQISVYDS-KL---ECSRSWS-PK------------DALPAPISSAIYSCDGLLVY 1033 (1135)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~-~~---~~~~~~~-~~------------~~h~~~i~~~~~s~dg~~l~ 1033 (1135)
...-++.+..|.|.++|.++. .|.|+.||+ .. +...+.. .+ ..-.+...-|.+|-||+.|+
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 013578999999999999964 899999999 22 2221111 10 01123346788999999988
Q ss_pred EEe
Q 001157 1034 AGF 1036 (1135)
Q Consensus 1034 s~~ 1036 (1135)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 765
No 396
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.55 E-value=0.0065 Score=41.63 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.1
Q ss_pred ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE
Q 001157 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1135)
Q Consensus 871 ~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 910 (1135)
+++...+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677778899999999999 778999999999999996
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.50 E-value=2 Score=48.11 Aligned_cols=289 Identities=14% Similarity=0.169 Sum_probs=157.3
Q ss_pred CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-----CCCEEEE
Q 001157 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMS 857 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-----dg~~la~ 857 (1135)
+...|++|+..|.++||+-......+. ..++...+ ..+|..++.-+ +...||+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaV 93 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAV 93 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEE
Confidence 345789999999999997643332222 11122112 45666665432 3446666
Q ss_pred EeCCeEEEEeCCC--ce-------EEEEeeCCCC--CeeEEEEeCC----CCcEEEEEeCCccEEEEEcccceEeEeecC
Q 001157 858 ASGGKVSLFNMMT--FK-------VMTMFMSPPP--AATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 858 ~sdg~i~iwd~~~--~~-------~~~~~~~~~~--~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 922 (1135)
-....+.||.+.. |. .+.....|.- ....+++-|- +..+|.+-+-||.+.+|+-+.-.....+.+
T Consensus 94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~ 173 (418)
T PF14727_consen 94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD 173 (418)
T ss_pred ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence 6678888888731 11 1222222332 2333443332 246899999999999999766554444443
Q ss_pred ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc--------------------cccceeeecCCCCCCCCCCceeEEE
Q 001157 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE--------------------KLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~--------------------~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
.--...+++.+.-..+++++.+..|.-|....-. ++.. -....-|.. .-.+..+.+
T Consensus 174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~-dWs~nlGE~--~l~i~v~~~ 249 (418)
T PF14727_consen 174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNP-DWSFNLGEQ--ALDIQVVRF 249 (418)
T ss_pred -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccc-eeEEECCce--eEEEEEEEc
Confidence 2223457788888899999999888888764211 0000 000001110 012233344
Q ss_pred CCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc----CCC---EEEEEecCCcEEEEecCCCceeecc
Q 001157 983 HNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC----DGL---LVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 983 spdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~----dg~---~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+.....+++-.+.++.+.+.++. ++.....+ -.+.....|.. ++. .+++++.++++.||.=.+..--+.+
T Consensus 250 ~~~~~~IvvLger~Lf~l~~~G~-l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l 326 (418)
T PF14727_consen 250 SSSESDIVVLGERSLFCLKDNGS-LRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL 326 (418)
T ss_pred CCCCceEEEEecceEEEEcCCCe-EEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC
Confidence 44445566656667777666542 22222221 11222222221 222 4778888999999965544333333
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCCC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~~ 1112 (1135)
. |.--.+.++..++-...|++-+.+|.+.+-=+.|....+..|++
T Consensus 327 ~------------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~ 371 (418)
T PF14727_consen 327 P------------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPL 371 (418)
T ss_pred C------------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCc
Confidence 1 11122233333334568999999999999888886666655443
No 398
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.49 E-value=0.068 Score=63.87 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC-eEEEEeccCC---CccEEEEEEcCCeEEEEeCCCCCceEE-ec--
Q 001157 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKE---SIQFIFSTAIDGKIKAWLYDYLGSRVD-YD-- 538 (1135)
Q Consensus 466 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~-v~~l~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~-- 538 (1135)
+.++|........|+-.|++.|+.+..+..|... |..++-.... +..-.+.|-.++.+..||.+-...... -.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334444456788999999999999999877654 6666532110 113456777888999999987543221 11
Q ss_pred --CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 539 --APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 539 --~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
.......|++-+.+| +||+|+ .+|.|++||--..+....+.+... +|..+..+.||+++++.+. ..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs----~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGS----NKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEe----CCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 234467888888777 455554 377799999433333334555454 8999999999999998764 4555655
Q ss_pred C
Q 001157 617 M 617 (1135)
Q Consensus 617 ~ 617 (1135)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
No 399
>PRK10115 protease 2; Provisional
Probab=96.48 E-value=3.4 Score=50.48 Aligned_cols=244 Identities=10% Similarity=0.044 Sum_probs=121.4
Q ss_pred CeeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.+..+.+||||++++.+-+.+| .+++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4778899999996555544444 588888888764321 0111 11469999999977
Q ss_pred EEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCee-EEEEecCCCceEEEEEc-CCCcEEEEEcC--CCeeEEEe
Q 001157 424 GVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYTF 493 (1135)
Q Consensus 424 a~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~l 493 (1135)
+....+ ..|..+++.++..-.. ..+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 3678888887732111 12222222333 33344477743322222 34578888843 34422222
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEc---CCeEEEEeCCCCCc-eEEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGS-RVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
..-......+. +. ++ .+++.... ...|...++..... ...+.. ....+..+.+. +++|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 21222222222 22 22 33333322 22344445542222 223333 23477888877 445554432 134555
Q ss_pred EEEEeCCCCceeEEee-cccCCceeEEEEe--CCCC-EEEEEe---cCCeEEEEECCCCe
Q 001157 569 LVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1135)
+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7777765433 33333 1111 22333344 3443 343332 45788888988764
No 400
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.47 E-value=0.23 Score=43.14 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=68.2
Q ss_pred eeEEEeec---CC-CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 843 AACIALSK---ND-SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 843 v~~l~~s~---dg-~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
|+++++.. || +.|++|+ |..|++|+-. ..+..+. ..+.|++++-.. . ..++.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLG-G-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcC-C-CEEEEEecCCEEEEEeC--ccee
Confidence 56666654 33 4677777 8999999854 5666666 457788888776 4 67889999999999975 4445
Q ss_pred EeecCccCceEEEEEcC---CC-CeEEEEcCCCcEE
Q 001157 918 TKLKGHQNRITGLAFSP---TL-NALVSSGADAQLC 949 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~---d~-~~l~s~~~D~~i~ 949 (1135)
.+.+.... ++++++.. || .-|++|=.+|.|-
T Consensus 75 WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55554433 66666543 23 3688888888764
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.37 E-value=2.2 Score=47.05 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.5
Q ss_pred ceeEEEEeC-------CCCEEEEEecCCeEEEEECCCCeeeEEE-eCCCCCC-CcCeEEEecCCCEEEEEeCCCcEE
Q 001157 590 SLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 590 ~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.+..+.|-. .|.++++.-..+.|....+.....+... ..-.... .+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455555553 3345555545678888777655333222 2112222 678999999999888887788763
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.30 E-value=4.3 Score=49.72 Aligned_cols=201 Identities=12% Similarity=0.127 Sum_probs=116.5
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCC--------eEEEEecc--------------CCCccEEEEEEcCCeEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~--------v~~l~~~~--------------~~~~~~l~s~s~dg~i~~w 526 (1135)
.++.++.++.|.-.|..+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888887776432110 11122211 1123578888899999999
Q ss_pred eCCCCCceEEecCCCCe------------EEEEEEcC--CCCEEEEEeeCCC------CCceEEEEeCCCCceeEEeecc
Q 001157 527 LYDYLGSRVDYDAPGNW------------CTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~------------v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.++++....+.....- ...+.-.| .+..++.++...+ ..+.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99988887655322110 00111112 1345555543222 2688999999999998877531
Q ss_pred c--------C--------Cce-eEEEEeCCCCEEEEEe------------------cCCeEEEEECCCCeeeEEEeCCCC
Q 001157 587 R--------K--------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 587 ~--------~--------~~v-~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
. . ..+ ...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 011 2245555555544421 134567778888888776654221
Q ss_pred C-------CCcCeEEEec-CCC---EEEEEeCCCcEEEEECCCcchheee
Q 001157 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 632 ~-------~~v~~~~~s~-~~~---~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+| +.+..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG-~~l~~ 484 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG-EPIVP 484 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC-CEEee
Confidence 0 0111122333 563 7889999999999999999 44443
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.26 E-value=2.4 Score=46.55 Aligned_cols=257 Identities=14% Similarity=0.128 Sum_probs=110.0
Q ss_pred eeEEEEec--C-CCCeeEEEee-----------cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccc-c
Q 001157 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ-N 401 (1135)
Q Consensus 337 ~~~~~~l~--h-~~~V~~~~fs-----------pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~ 401 (1135)
++++..+. + +++....-|+ .+.++|++-|-.++.|.|.|+.+..... ++..+-+...... .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P----~l~KvIe~~ev~~k~ 127 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKP----RLHKVIEPEEVFEKT 127 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-----EEEEEE-HHHHHHHH
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCC----ceEeeeCHHHHHhhc
Confidence 46666665 3 3566666665 2445555555578899999998543211 1111110000000 0
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAF------SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~- 474 (1135)
..-..| .+---|+|..++++- ..|.+.+.|-++-+.......-.+....-..+.|.|..+ .++|..
T Consensus 128 g~s~PH-----T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 128 GLSRPH-----TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp -EEEEE-----EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred CCCCCc-----eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 001112 223346888888762 234577888776544432211111223346677777666 677654
Q ss_pred -------------------CCCcEEEEEcCCCeeEEEecCCC--CCeEEEEeccCCCccE-EEEEEcCCeEEEEeC-CCC
Q 001157 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DYL 531 (1135)
Q Consensus 475 -------------------~d~~i~iwd~~~~~~~~~l~~h~--~~v~~l~~~~~~~~~~-l~s~s~dg~i~~wd~-~~~ 531 (1135)
...++.+||+.+.+.++++.--. .....|.|..+++..+ ++.+....+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 24589999999999999886332 2345667665544333 334444555555533 222
Q ss_pred C----ceEEecCC-----------------CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc---eeEEee-cc
Q 001157 532 G----SRVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS-GF 586 (1135)
Q Consensus 532 ~----~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~-~~ 586 (1135)
+ .+..+... ..-|+.+..|.|.++|+.+.. ..|.|+.||+.... ++.+.. +.
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1 12222111 235789999999999998764 68889999997633 222211 10
Q ss_pred c--------------CCceeEEEEeCCCCEEEEEe
Q 001157 587 R--------------KRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 587 ~--------------~~~v~~~~~s~~~~~l~~~~ 607 (1135)
. .+....+..|.||++|+...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 01234577888888777653
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.23 E-value=0.42 Score=56.59 Aligned_cols=232 Identities=11% Similarity=0.010 Sum_probs=121.8
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCC
Q 001157 419 DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVA 486 (1135)
Q Consensus 419 dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~ 486 (1135)
.+..++.|+.+ ..+..||..++.-. ....+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566777666 35788888876322 222232 222344455543 44 77888888 3677888877
Q ss_pred CeeEE--EecC--CCCCeEEEEeccCCCccEEEEEEcCCe-----EEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 487 GRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~--~l~~--h~~~v~~l~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++-.. .+.. +...+..+ +|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|+..+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred CceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence 76433 1211 22222222 3478888988865 66777765443332222221111222233566666
Q ss_pred EEeeCCCCC--ceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEEeCCC
Q 001157 558 SCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADG 630 (1135)
Q Consensus 558 ~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 630 (1135)
+||.++..+ ..+..||..+++....-.-.....-..+ ..-++...+.||.|+ +|..||..+.+-...-....
T Consensus 433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCcCCCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 776554332 5788999888765433222211111112 223456667777665 37788888766444322211
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCC-----cEEEEECCCc
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~ 664 (1135)
....+..+ .-++...++|+.|| +|..||..++
T Consensus 512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 11111112 23566777787765 4555655544
No 405
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=1.1 Score=46.11 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=110.3
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+-...|.++.|+|+.+.|++......-.||=-..|+.++.. .+.+. .....+.+..+|+ +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 345555999999999999999988888878777777776643 44442 3456788888888 7888888999998887
Q ss_pred CCCeeEEE-------ec--CC-CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCC-------CCeE
Q 001157 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1135)
Q Consensus 485 ~~~~~~~~-------l~--~h-~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~-------~~~v 544 (1135)
..+..+.. +. .+ +.....++|.|.. +.|..+-.-+-+.+|.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 76533221 11 12 5667889998865 67777777777777765532211111 111 2257
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.++.|.+..+.+++-+ +.++.+...|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7888887666665554 346667666654 444443
No 406
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.22 E-value=0.13 Score=44.57 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=64.2
Q ss_pred eeEEEee---cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 349 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 349 V~~~~fs---pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
|+++++. -||+.-|++||.|..|+||+-.. .+.. + ...+.|+++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E-------------------i-~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE-------------------I-TETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE-------------------E-ecccceEEEEEcCC-CEEEE
Confidence 4555544 46666788999999999998542 2211 1 13456777777666 66889
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe---cCCCceEEEEEcCCCcEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---HPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s---~d~~~~~l~s~~~d~~i~ 480 (1135)
+..+|+|-+|+-.. +..+ .+. +..+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998643 2222 222 2235566554 34443 578887788764
No 407
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.11 Score=56.92 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=96.5
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-----EEEEcCCeEEEEeCCCCCc-eEE-ecC-
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RVD-YDA- 539 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-----~s~s~dg~i~~wd~~~~~~-~~~-~~~- 539 (1135)
+++.++.....++--|++.|+.+.++.-+.. |+-+.+.|+..+..+ +.|-.|+.|.-||.+-... ... ...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4666777778899999999999999887766 777777777655444 3455788899999885544 211 111
Q ss_pred ---CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEE
Q 001157 540 ---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 540 ---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
......|.+-..+| ++++++. +|.|++||--..+....+++..+ +|..+..+.+|+++++.+. ..+.+-+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred ccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 12355666666655 6666664 66699999733333344566555 8999999999999988764 4444444
No 408
>PHA02713 hypothetical protein; Provisional
Probab=96.12 E-value=0.45 Score=56.56 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=112.8
Q ss_pred eEEEEeCCCceEEE--EeeCCCCCeeEEEEeCCCCcEEEEEeCC------ccEEEEEcccceEe--EeecCccCceEEEE
Q 001157 862 KVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEVK--TKLKGHQNRITGLA 931 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~~--~~l~~h~~~i~~l~ 931 (1135)
.+..||..+++-.. .+..... -.+++.. ++.+.++|+.+ ..+..||..+++-. ..+........ +
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--L 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--E
Confidence 46778877654221 1211111 1223332 56788888754 34788898776532 22221111111 2
Q ss_pred EcCCCCeEEEEcCCC-----cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-C-----------
Q 001157 932 FSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------- 994 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d----------- 994 (1135)
..-+|+..+.||.++ ++..||..+.+-.. +..+.... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 233678888888764 47889987654211 11111110 111122 23566666643 2
Q ss_pred ------------CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEecCC-Cceeecc
Q 001157 995 ------------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFRCRI 1055 (1135)
Q Consensus 995 ------------~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d------g~V~vwd~~~-~~~~~~~ 1055 (1135)
..+..||...+.-....... ......-+..-+|++.+.|+.+ ..|..||..+ .+-...-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 24778888433322221111 1112222234467777777654 2467898887 4322111
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC--cEEEEecCCCccccCCCCCCCCCC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDNGP 1117 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg--~i~lW~~~~~~~~~~~~~~~~~~~ 1117 (1135)
. +|.. ....-.+.. ++++.+.|+.|| .+-.+|+.+.+ |+.-.|+-..+
T Consensus 498 ~----m~~~-----r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 498 T----TESR-----LSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred c----cCcc-----cccceeEEE---CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence 1 1111 011111111 678999999998 77778887655 77655554433
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.09 E-value=0.016 Score=56.56 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=73.0
Q ss_pred CCEEEEEe-CCeEEEEeCCCceE-EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc-CceE
Q 001157 852 DSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 928 (1135)
Q Consensus 852 g~~la~~s-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i~ 928 (1135)
+.-+++|. +|.|.+|+...... ...+..-...|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566666 99999998863211 111222223444433333356689999999999999999999888888887 6666
Q ss_pred EEEEcCCCCeEEEE--cCCCcEEEEeCCC
Q 001157 929 GLAFSPTLNALVSS--GADAQLCMWSIDK 955 (1135)
Q Consensus 929 ~l~~s~d~~~l~s~--~~D~~i~iWd~~~ 955 (1135)
.+..+..+++++.+ |.|..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 67777777788877 8888888888875
No 410
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.13 Score=61.32 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCcEEEEEeCCccEEEEEcccce-EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCC
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~ 971 (1135)
-+.+++.|++.|.|-..|....- ....=..-.++|++++|+.||++++.|-.+|.|.+||+..++..+ ....+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-----~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-----VITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee-----eeeecC
Confidence 34588999999999998876531 111222235789999999999999999999999999999977443 333333
Q ss_pred CCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 972 SPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 972 ~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
.+...+..+.+..++..+++++.+. .+|..
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~G-sf~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGG-SFWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCC-ceEEE
Confidence 2235666677777777666654332 26666
No 411
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.087 Score=62.77 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.||. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5667899999999999888764 111111112356899999999999 889999999999999999999999988888
Q ss_pred CeEEEEecc-CCCccEEEEEEcCCeEEEEeC
Q 001157 499 PVYSVCPHH-KESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 499 ~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~ 528 (1135)
+.+++-++- .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877775442 233356777777776 5644
No 412
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.99 E-value=5.6 Score=48.22 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=65.6
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCceEEEEee--CCCCCeeEEEEeCCCCcEEEEEeCCccEEE--EEcccceEeEeec
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQI--YNVRVDEVKTKLK 921 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~i--wd~~~~~~~~~l~ 921 (1135)
.|+.|-+.++.+|-...+++||+...++++... .-...|+.+.+- +..+++|+..-.|.+ |+-+.++++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 556677778888889999999999877766543 234567888874 457777876656655 4444444433221
Q ss_pred -CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001157 922 -GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 922 -~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
.-..-|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 112236666654 45567766666655555443
No 413
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.96 E-value=0.021 Score=41.06 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
..+..++|+| ..++||.|+.||.|.++++ ++++.|+
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 5688999999 7889999999999999999 7787774
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.93 E-value=2.3 Score=43.85 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=115.0
Q ss_pred CCCceEEEEEeCCcceeeeecccc--eeEEEeecccCCCCCCcccccccceeccCCCCCccc-cCCCCCCCCCCCeeEEE
Q 001157 771 AASKVVRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIA 847 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~~l~ 847 (1135)
.......+.|..+|..+-+.+.-| .|+.+ |+.+|+... ..++. ..--..++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~~----~~FgEGit 96 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLPP----RYFGEGIT 96 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-TT----T--EEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECCc----cccceeEE
Confidence 345667888988888777777765 44444 445555432 22322 33344566
Q ss_pred eecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccC--
Q 001157 848 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN-- 925 (1135)
Q Consensus 848 ~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-- 925 (1135)
+..|.-+.++--++...+||..+.+.+.++.- .+.=..++. ++..|+..+....++++|..+.+...++.-..+
T Consensus 97 ~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 97 ILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred EECCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 65554455555589999999999999998874 345556663 455666666667899999888777666543322
Q ss_pred ---ceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC-------CCCCCCCCceeEEECCCCcEEEEEEC
Q 001157 926 ---RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVVHE 994 (1135)
Q Consensus 926 ---~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1135)
.+..|.+- +|...|=.=....|..-|..+|+.....-+..+. .+.....-...+|+.|....+.+++.
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 35567775 6777776666677888888888865543222211 11111245679999988887777543
No 415
>PHA02713 hypothetical protein; Provisional
Probab=95.90 E-value=0.65 Score=55.22 Aligned_cols=220 Identities=7% Similarity=0.010 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCCCeeEE--EecCCCCCeEE
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYS 502 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~l~~h~~~v~~ 502 (1135)
.+..||..+++-. ....+...... .+++. -++. +.+.||.+ ..+..||..+..... .+.........
T Consensus 273 ~v~~yd~~~~~W~-~l~~mp~~r~~-~~~a~-l~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYS-VISTIPNHIIN-YASAI-VDNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEE-ECCCCCccccc-eEEEE-ECCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence 4677887775422 11122111111 12222 3455 56667653 357788887765321 11111111122
Q ss_pred EEeccCCCccEEEEEEcCC-----eEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCEEEEEeeCCCC----------
Q 001157 503 VCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSCGTSKEG---------- 565 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~~~~~---------- 565 (1135)
+.+ +|.+.+.|+.++ ++..||..+..-... +.........+ .-+|+..+.||.++..
T Consensus 348 ~~~----~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 348 AVI----DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred EEE----CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccc
Confidence 222 336777777654 477888776533221 11111111122 2356666666643210
Q ss_pred ---------CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC------CeEEEEECCC-CeeeEEEeCC
Q 001157 566 ---------ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDAD 629 (1135)
Q Consensus 566 ---------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~ 629 (1135)
...+..||..+.+....-.-... ........-+++..+.||.+ ..+..||..+ .+-...-...
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 24588899887665332221111 11111223345666666643 2467899887 4432222211
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCCC--cEEEEECCCc
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSDN--GIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~dg--~v~iw~~~~~ 664 (1135)
........++ -+|.+.++|+.++ .+..||..+.
T Consensus 501 ~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 501 SRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccccceeEE--ECCEEEEEeeecceeehhhcCcccc
Confidence 1111122222 3688888998888 7788888776
No 416
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.84 E-value=2.2 Score=44.33 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=119.6
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcc------cc-eEeEeecC-----ccCceEEEEEcCCCCe------------E
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR------VD-EVKTKLKG-----HQNRITGLAFSPTLNA------------L 939 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~-~~~~~l~~-----h~~~i~~l~~s~d~~~------------l 939 (1135)
-..|+|+| .+.+.++...-+...+||.. .. .++-.+.. -....+.+.|+....+ +
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45799999 78888888788899999986 12 23333332 2345788888654333 5
Q ss_pred EEEcCCCcEEEEeCCCcccc-cceeeecCCCCCCCCCCceeEEEC--CCCcEEEEE--ECCcEEEEeccCCcccc---cC
Q 001157 940 VSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVV--HESQISVYDSKLECSRS---WS 1011 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fs--pdg~~l~~~--~d~~i~vwd~~~~~~~~---~~ 1011 (1135)
+.+++||+|.-|.-.-+-.. ....+....+... .--..+++. ..+.+|.++ ..++|.|||-+...+.. +.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 67889999999985432220 0111111111111 223445554 346777775 58999999985554322 10
Q ss_pred C----CCCCCCCeEEE------EE---ccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 1012 P----KDALPAPISSA------IY---SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1012 ~----~~~h~~~i~~~------~~---s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
. ...-.-.|..+ .| .+++..=+.|..-|.|-+||.. |++++++... +.-..+-.++-
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~---------g~LNaPWG~a~ 251 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS---------GRLNAPWGLAI 251 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC---------CcccCCceeee
Confidence 0 00001112221 11 1222222223345789999998 7888887522 23344445555
Q ss_pred CCC-----CCCEEEEEecCCcEEEEecCCCc
Q 001157 1079 HPS-----EPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1079 sp~-----~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
.|. .+.+|+---.||+|..+|..+++
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 442 46788877789999999998777
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.81 E-value=2.4 Score=51.75 Aligned_cols=204 Identities=12% Similarity=0.073 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCC------CeeEEEEec----------------CCCceEEEEEcCCC
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG------GVNDIAFAH----------------PNKQLCIVTCGDDK 477 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~l~~s~----------------d~~~~~l~s~~~d~ 477 (1135)
+..|..++.++.|.-.|..+|+.+-.... ..... ....+++.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 45666667777788888887776542211 10000 012233321 233 577788899
Q ss_pred cEEEEEcCCCeeEEEecCCCCCeE-------------EEEeccCCCccEEEEEEc----------CCeEEEEeCCCCCce
Q 001157 478 MIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKAWLYDYLGSR 534 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~l~~h~~~v~-------------~l~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~ 534 (1135)
.+.-.|.++|+.+..+. ..+.|. .+.-.|--.+..++.|+. +|.|+-+|.++++.+
T Consensus 271 ~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999987763 222221 011111101245666643 688999999999887
Q ss_pred EEecCC---------CC--------eE-EEEEEcCCCCEEEEEee--------------CCCCCceEEEEeCCCCceeEE
Q 001157 535 VDYDAP---------GN--------WC-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 535 ~~~~~~---------~~--------~v-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
..+... .+ .+ ..++++++...++.... +..-.+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 765421 00 11 23456666555554321 011235677788899998888
Q ss_pred eec-ccCC-------ceeEEEEeC-CCC---EEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 583 YSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 583 ~~~-~~~~-------~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
++. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 3221 111122333 453 67888899999999999998887654
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.56 E-value=0.041 Score=39.57 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=29.8
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccc
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~ 381 (1135)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8999999999999998 4543
No 419
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.45 E-value=2 Score=42.36 Aligned_cols=142 Identities=12% Similarity=0.083 Sum_probs=81.2
Q ss_pred CCeeEEEEecCCCceEEE-EEcCCCcEEEEEcCCCeeEEEecCCC--------CCeEEEEeccCCCccEEEEEEcCCeEE
Q 001157 454 GGVNDIAFAHPNKQLCIV-TCGDDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKIK 524 (1135)
Q Consensus 454 ~~v~~l~~s~d~~~~~l~-s~~~d~~i~iwd~~~~~~~~~l~~h~--------~~v~~l~~~~~~~~~~l~s~s~dg~i~ 524 (1135)
.+.+.-..+|+|+ +.+ +-++-+. ++....|.+..-+.+|. .--+.++|+.+. ..+.++-+.+-+|.
T Consensus 109 nR~NDgkvdP~Gr--yy~GtMad~~~--~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 109 NRLNDGKVDPDGR--YYGGTMADFGD--DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEVD 183 (310)
T ss_pred cccccCccCCCCc--eeeeeeccccc--cccccccEEEEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEEe
Confidence 3556667889998 432 2222111 12212222222223332 233456776443 24556677788888
Q ss_pred EEeCCC--CC-----ceEEecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeE
Q 001157 525 AWLYDY--LG-----SRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1135)
Q Consensus 525 ~wd~~~--~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1135)
-||.+. +. .+..+.. .......++...+|+..+++.. .++|...|+.+|+.+.++.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 888432 21 2222221 1112334556677887777753 77899999999999999988766 7999
Q ss_pred EEEeCCC-CEEEE
Q 001157 594 VQFDTTR-NRFLA 605 (1135)
Q Consensus 594 ~~~s~~~-~~l~~ 605 (1135)
++|...+ ..+++
T Consensus 259 ccFgGkn~d~~yv 271 (310)
T KOG4499|consen 259 CCFGGKNLDILYV 271 (310)
T ss_pred EEecCCCccEEEE
Confidence 9987542 34443
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=0.026 Score=55.08 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=58.8
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc--CCcccccCCCCC
Q 001157 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK--LECSRSWSPKDA 1015 (1135)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~--~~~~~~~~~~~~ 1015 (1135)
+...+.|+.|+-+++..-+...........+ ... -.-+..+++ +.+|.|.+|..+ +.....+...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---------~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-- 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---------QRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-- 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---------eee-cccCceEEeecccceEEEecCCccchHHHhhhcc--
Confidence 4455678888888776533211111111111 011 112234445 679999999883 3332222222
Q ss_pred CCCCeEEE-EEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 1016 LPAPISSA-IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1016 h~~~i~~~-~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
...|.++ .-..++.+..+++.||.|+-|++.-++.+....
T Consensus 101 -~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 101 -EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred -cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 2333332 223456678899999999999999888776654
No 421
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.37 E-value=2.2 Score=43.22 Aligned_cols=209 Identities=13% Similarity=0.065 Sum_probs=131.3
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccce
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1135)
.-..++-+| ||..-.++...+.|--.|-.+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+.....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 345678888 88888888888889888999998777666666667788899999877766554 4666677666643221
Q ss_pred eeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001157 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~ 1042 (1135)
....+ .........|.++|++-+++..|.---.|.....++.|.... ...-..|+..|||..-++.-.+..|.
T Consensus 141 ---lp~~~--a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 141 ---LPLEH--ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ---ccccc--CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence 11111 225677889999999988865432222233333333333322 44556789999999888877778888
Q ss_pred EEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc-cccCCC
Q 001157 1043 VFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGT 1110 (1135)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~-~~~~~~ 1110 (1135)
..|-.++.....-.+. .. + ..... .|+..-++.-++....+.+..+|.+... ..|.+|
T Consensus 214 ridp~~~~aev~p~P~-----~~---~-~gsRr-iwsdpig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 214 RIDPFAGHAEVVPQPN-----AL---K-AGSRR-IWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred EcccccCCcceecCCC-----cc---c-ccccc-cccCccCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 8888777332221111 10 1 11112 2333356677777677788888877655 334443
No 422
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.25 E-value=4 Score=41.47 Aligned_cols=240 Identities=13% Similarity=0.098 Sum_probs=145.4
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
...-..++-+|||..-.++. .+.|--.|..+|+....-.+....-..|...|+++.++ +-+.. -|.=.|-++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcccceEE
Confidence 44556789999999888887 68888889999988777666667778889999444444 32222 34445555554221
Q ss_pred ---eecCccCceEEEEEcCCCCeEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 919 ---KLKGHQNRITGLAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 919 ---~l~~h~~~i~~l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
..+.-........|.+.|.+..|+.. .+.|++|+.-.| .....++..|||
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpdG 200 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPDG 200 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCCC
Confidence 12223445677889999998888752 234555554432 245788999999
Q ss_pred cEEEEE-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc
Q 001157 987 THLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1065 (1135)
Q Consensus 987 ~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~ 1065 (1135)
..-+++ .++.|...|........+....+....-..+--+|.|+.-++....+.+..+|-.+-. -.... +|
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LP--- 272 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LP--- 272 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CC---
Confidence 987774 5666777777332333333333323344455567888888887777888888776543 22222 12
Q ss_pred cCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc-cccCCC
Q 001157 1066 VSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGT 1110 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~-~~~~~~ 1110 (1135)
+......++.-.. .++.-.+--..|.|.-+|..+.+ .++..+
T Consensus 273 --gs~arpys~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 273 --GSKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred --CCCCCcceeeecc-CCcEEeeccccCceeecCcccceEEEecCC
Confidence 2223333444333 23344434445677777776655 334433
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.23 E-value=3.3 Score=50.17 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCc-eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
...|..+.++|+|+++|..+...|.|..+... ..-..+.+....|.|=.+.= +..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc---------------------
Confidence 56789999999999999999777777776431 11112222222232222221 11111
Q ss_pred eecCccCceEEEEEcCC---CCeEEEEcCCCcEEEEeCCC
Q 001157 919 KLKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d---~~~l~s~~~D~~i~iWd~~~ 955 (1135)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123345666777765 36677777777788887764
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.18 E-value=3.7 Score=40.64 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=39.8
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeC
Q 001157 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp 891 (1135)
.+++..+|++.++.- .++|...|..+|+.+.+++-+...|+|++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 356667888666665 78999999999999999999999999999964
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.08 E-value=5.8 Score=42.43 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCeeEEEeecCCCEEEEEeCCe-EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE-cccceEe
Q 001157 840 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDEVK 917 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~-i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~~~ 917 (1135)
...+..+..++||+++++++.|. ..-||-....=...-......|.++.|+| ++.+.+.+ ..|.|+.=+ ....+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCcccc
Confidence 56688889999999999999665 56787553211111122457899999999 66665544 888888877 2222221
Q ss_pred Ee----ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE
Q 001157 918 TK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1135)
Q Consensus 918 ~~----l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1135)
.. +..-.-.+..++|.+++...|+|+. |++ +...+.|+. .+....-.........+.|.++.+-++.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt-----W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT-----WQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS------EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc-----ceECccccCCCCceEEEEEcCCCceEEECC
Confidence 11 2222334789999998888876664 433 445555442 111111001114578899988888888899
Q ss_pred CCcEEEE
Q 001157 994 ESQISVY 1000 (1135)
Q Consensus 994 d~~i~vw 1000 (1135)
+|.+.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9887655
No 426
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.06 E-value=1.7 Score=51.61 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=124.1
Q ss_pred ecCCCEEEEEe-C------CeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCC------ccEEEEEcccc
Q 001157 849 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVD 914 (1135)
Q Consensus 849 s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~ 914 (1135)
+..+.++++|+ + ..+..||..++.-.....- ....-.++++. ++.+.++|+.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33456666776 4 3588999887633222221 22234556665 46888899988 36778888876
Q ss_pred eEeE--eecCccCceEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCcccccceeeecCCCCCCCCCCceeE-EECCCC
Q 001157 915 EVKT--KLKGHQNRITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV-QFHNDQ 986 (1135)
Q Consensus 915 ~~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~fspdg 986 (1135)
+-.. .+.......... .-+|.+.|.||.||. +-.||..+.+-.. ..... ...... .-.-+|
T Consensus 360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~---va~m~------~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP---VAPML------TRRSGHGVAVLGG 428 (571)
T ss_pred ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccc---cCCCC------cceeeeEEEEECC
Confidence 6333 222222222222 237888999999864 6677776644211 11010 011111 223356
Q ss_pred cEEEEE-EC------CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-----EEEEecCCCceeec
Q 001157 987 THLLVV-HE------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLRFRCR 1054 (1135)
Q Consensus 987 ~~l~~~-~d------~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~-----V~vwd~~~~~~~~~ 1054 (1135)
+..++| .+ .++..||...+.-....+.. ..+...-.-.-++.+.+.|+.|+. |..||..+.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 665663 23 45889998433322222211 111111122357888888887763 77788887654332
Q ss_pred cCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC-----cEEEEecCCCccccCCCCC
Q 001157 1055 IGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg-----~i~lW~~~~~~~~~~~~~~ 1112 (1135)
-. ++ .....+-.+.. ++.+.++|+.|| +|-.||..+.+ |...++
T Consensus 507 ~~----m~-----~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 507 AP----MT-----SPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cc----Cc-----cccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 11 00 11111111211 678888898887 56667776554 665433
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.05 E-value=0.67 Score=54.17 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeC-----
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~----- 528 (1135)
...-+.-|.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|...++|+.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555455 34444455689999999887655332 4578999999999999999999999999999842
Q ss_pred CCCC----ceE--EecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 529 DYLG----SRV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 529 ~~~~----~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.... .+. .+..+ .++|.+..|.++|..++.+| +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 111 22223 36889999999998888763 45888874
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.96 E-value=8 Score=43.41 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=87.3
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccc
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
...+..++ ++.+++.+..-..++-||- |+. ...-..-...++++.|.+++.+++++ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 6777766543332333442 221 11112234568999999998877655 55644 454444431100
Q ss_pred -eeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001157 962 -RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1135)
Q Consensus 962 -~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~ 1040 (1135)
......... ....+..+.|.+++..++++..|.+....-.++.-........-..+...+.|.++++.+++| .+|.
T Consensus 316 ~~f~~~~~~~--~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 316 FDFEEADIKS--RGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred cceeecccCC--CCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 011111100 013578899999999999999888877665544433322122225678899998888777665 5787
Q ss_pred EEEE
Q 001157 1041 IGVF 1044 (1135)
Q Consensus 1041 V~vw 1044 (1135)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.76 E-value=8.2 Score=42.55 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCccEEE-EEcccce-EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccc
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSSVQI-YNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~ 958 (1135)
...+..+.+.| ++.+++++ ..|.++. +| ..++ -...-.+-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 77776655 4565543 22 2222 112222334578999999998876654 567654323444331
Q ss_pred ccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001157 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1135)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d 1038 (1135)
=.. ........ ...+..++|.|++..++++.+|.+..-.-.++.-........-......+.|..+++.+++| ..
T Consensus 248 W~~--~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 248 WSK--PIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred ccc--ccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CC
Confidence 110 11110000 13467899999998888888876654222333333222111113467888888777777655 47
Q ss_pred CcEEEEec
Q 001157 1039 GAIGVFDA 1046 (1135)
Q Consensus 1039 g~V~vwd~ 1046 (1135)
|.|--|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877753
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.74 E-value=8.6 Score=43.18 Aligned_cols=138 Identities=12% Similarity=0.135 Sum_probs=78.7
Q ss_pred CeeEEEeecCCCEEEEEe------------CC-eEEEEeCCC--ce--EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc
Q 001157 842 SAACIALSKNDSYVMSAS------------GG-KVSLFNMMT--FK--VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s------------dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg 904 (1135)
....++|.++|+++++-. .+ .|.+++-.+ ++ ....+...-...+.+++.+ ++ +++ ++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456799999999887742 23 677776542 33 2234443344568899998 77 444 44443
Q ss_pred cEEEEEccc-------ceEe-EeecC----ccCceEEEEEcCCCCeEEEEcCC-------------------CcEEEEeC
Q 001157 905 SVQIYNVRV-------DEVK-TKLKG----HQNRITGLAFSPTLNALVSSGAD-------------------AQLCMWSI 953 (1135)
Q Consensus 905 ~v~iwd~~~-------~~~~-~~l~~----h~~~i~~l~~s~d~~~l~s~~~D-------------------~~i~iWd~ 953 (1135)
..++.|... .+.+ ..+.. +......++|.|||.+.++.+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333434431 1122 22322 23447789999999887766521 33444455
Q ss_pred CCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
++++. . .+ ..+. .....++|+|+|+++++
T Consensus 172 dg~~~--e-~~--a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKL--R-VV--AHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeE--E-EE--ecCc----CCCccceECCCCCEEEE
Confidence 44331 1 11 1121 34578999999998877
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.29 Score=58.85 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=94.6
Q ss_pred CCCeeEEEeecCCCEEEEEe--CC-eEEEEeCCCceEE-----EEeeCC------CCCeeEEEEeCCCCcEEEEEeCCcc
Q 001157 840 EESAACIALSKNDSYVMSAS--GG-KVSLFNMMTFKVM-----TMFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 905 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg-~i~iwd~~~~~~~-----~~~~~~------~~~v~~l~~sp~~~~~lasg~~dg~ 905 (1135)
..++..+...+|++..++.. +| .|..||+.+...- .-+..| ..-..++.|.|.-....|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666778888988776664 33 5999999764321 112222 1235678888843445667778999
Q ss_pred EEEEEcccc-eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC
Q 001157 906 VQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 906 v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
|++..+.-. +....+. -....++++|+|.|+.++.|-..|++.-|...-..+....+..... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence 988876532 2222332 4456899999999999999999999998876653322111111111 26788999887
Q ss_pred CCcEEEE
Q 001157 985 DQTHLLV 991 (1135)
Q Consensus 985 dg~~l~~ 991 (1135)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 7777766
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.48 E-value=10 Score=42.55 Aligned_cols=281 Identities=10% Similarity=0.111 Sum_probs=144.1
Q ss_pred cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-----CCCEEEEEeCCC
Q 001157 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSKH 430 (1135)
Q Consensus 356 pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~la~~~~dg 430 (1135)
++++..+++||..|.++||+...+.......+ +-..-+.+|..++.-+ +...||+ =.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44555788999999999999855432211000 0122446777777532 2334555 4667
Q ss_pred eEEEEEcCCCCce------eeeeEeecCCC--CeeEEEEec----CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 431 IVHLYTYNPTGEL------RQHLEIDAHVG--GVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~------~~~~~~~~h~~--~v~~l~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+.||.+...... .....+..|.- ....++.-| .++. +|..=+-||.+.+++-+.-...+.+.+ .-
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 7888887322110 11112223332 233333332 2233 788889999999999554433344433 21
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC-------------------c----eEEecCCCC--eEEEEEEcCCC
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-------------------S----RVDYDAPGN--WCTMMAYSADG 553 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------------------~----~~~~~~~~~--~v~~~~~s~~~ 553 (1135)
--..+++.+.. +.+++++.+..+..|...... . ...+..... .+..+.++...
T Consensus 176 lPgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 176 LPGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22234555555 678899988888888642110 0 001111111 33344444344
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC----CC---CEEEEEecCCeEEEEECCCCeeeEEE
Q 001157 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
..+++-+ ...+.+.+. +|......+-... +.....|.. ++ ..++.++.++++.||.=. +++...
T Consensus 254 ~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA 324 (418)
T PF14727_consen 254 SDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSA 324 (418)
T ss_pred ceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEec
Confidence 4444443 556777765 4554433332221 222222222 22 247778899999998643 333332
Q ss_pred eCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
......-.+....|..-...|++-+.+|.+.+-=+-|..
T Consensus 325 ~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 325 QLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 221111011111222234578888889999988777663
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.56 Score=51.54 Aligned_cols=95 Identities=16% Similarity=0.037 Sum_probs=57.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEe---------cCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCC--CCEE
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFD---------AETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE--PNQI 1086 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--~~~l 1086 (1135)
-.|..+..++.|..++..+.+|.+.++= +++|+.....+-........+......+.-++|+|+. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3466666777777777766666544432 1233222211111111111122333667788999964 4667
Q ss_pred EEEecCCcEEEEecCCCccccCCCCC
Q 001157 1087 ALGMSDGAVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~~~~~~~~~~~~ 1112 (1135)
+.-+.|..||+|+++.....|..|++
T Consensus 184 ~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred EEEecCcEEEEEecCCcchhhccCCC
Confidence 77788999999999999988887654
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.16 E-value=1.1 Score=52.34 Aligned_cols=125 Identities=12% Similarity=0.165 Sum_probs=77.5
Q ss_pred EeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec-CccCceEEEEE--cCCCCeEEEEcCCCcEEEEe
Q 001157 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAF--SPTLNALVSSGADAQLCMWS 952 (1135)
Q Consensus 876 ~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~i~~l~~--s~d~~~l~s~~~D~~i~iWd 952 (1135)
++...-..++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.| .|||+.+++.|....|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3443444555555555 45555554455689999999887443322 35678999998 47889999999999999986
Q ss_pred CCCc----ccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 953 IDKW----EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 953 ~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
-... .......++...-......+|.+..|.+||.+++ +.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 5321 1111112221111111125788999999997554 45677888876
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.15 E-value=3 Score=41.30 Aligned_cols=176 Identities=14% Similarity=0.151 Sum_probs=91.3
Q ss_pred cEEEEEeCCccEEEEEcc--cceEeEeecCccCceEEEEEcCCCCeEEEEcCC------CcEEEE-eCCCcccccceeee
Q 001157 895 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW-SIDKWEKLKSRFIQ 965 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iW-d~~~~~~~~~~~~~ 965 (1135)
..|..+...+.|.+|++. ..+.+.+|..- +.|..+.++..|++|+|-=.+ ..+|+| |............-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455667789999988 34566667644 789999999999999985322 245554 22221111111111
Q ss_pred cCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001157 966 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
...||.. .. .+.+.. ...+.+-.+ + -+.+..+++-.|-..-|++|+ ++.+.+|.
T Consensus 108 RiaG~~v-----~~-~~~~~~-------~~qleiiEl---------P---l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRV-----TP-SFNESS-------KDQLEIIEL---------P---LSEPPLCIACCPVTGNLLVGC-GNKLVLFT 161 (215)
T ss_pred EEccccc-----cc-CCCCcc-------ccceEEEEe---------c---CCCCCCEEEecCCCCCEEEEc-CCEEEEEE
Confidence 1112110 00 000000 001111111 1 145677787777544455565 57899999
Q ss_pred cCCCce-eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1046 AETLRF-RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
+..... ...+...++......+.-+..+..+++ .++|+|..+ |-++++..+.
T Consensus 162 l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~i---c~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 162 LKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAI---CEGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred EEEEEEecccccEEechhhhhheecCceEEEEEE---EeeEEEEec-CCEEEEEEEe
Confidence 876544 222222222222222233344667776 457887664 6777887764
No 436
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=3.3 Score=40.22 Aligned_cols=188 Identities=16% Similarity=0.122 Sum_probs=103.3
Q ss_pred CCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeE--EEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccC
Q 001157 851 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1135)
Q Consensus 851 dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~--l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 925 (1135)
+|.++.+.+ ...|++||+.+++.+..-+-....+.. +.-. +..+.+-.-.+|.-+.+|..+-+++.++.- .+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFSY-EG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhccccc-CC
Confidence 556666655 356999999999988765433222211 1111 223333445678889999999888887653 33
Q ss_pred ceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCC
Q 001157 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~ 1005 (1135)
.=++++ .|++-|+.++...++++-|.++..... .+....||.
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~------------------~v~VT~~g~------------------ 173 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELD------------------TVQVTDDGV------------------ 173 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcc------------------eEEEEECCe------------------
Confidence 345554 466667767666778877777644221 111111221
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcc-ccCCCCCCcEEEeeCCCCCC
Q 001157 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY-AVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1006 ~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
.+.. ++-+.| -||.+.|-.-.+..|...+.++|+.+..+......+.. ....|....-.+++.|+.++
T Consensus 174 pv~~----------LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 174 PVSK----------LNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred eccc----------ccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 1111 111111 14555554444555556666666666555443322221 11233445567899997778
Q ss_pred EEEEEe
Q 001157 1085 QIALGM 1090 (1135)
Q Consensus 1085 ~l~s~~ 1090 (1135)
++++|-
T Consensus 243 ~~iTGK 248 (262)
T COG3823 243 FLITGK 248 (262)
T ss_pred EEEecC
Confidence 888774
No 437
>PHA03098 kelch-like protein; Provisional
Probab=93.93 E-value=2.5 Score=50.51 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=90.5
Q ss_pred cCCCEEEEEe-C------CeEEEEeCCCceEEEEeeCC--CCCeeEEEEeCCCCcEEEEEeCC-----ccEEEEEcccce
Q 001157 850 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDE 915 (1135)
Q Consensus 850 ~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~ 915 (1135)
.++..++.|+ + ..+..||..+.+-...-.-+ ......+. - ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666665 3 24778888776542211111 11122222 2 56788888866 357788887664
Q ss_pred EeE--eecCccCceEEEEEcCCCCeEEEEcCC------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCc
Q 001157 916 VKT--KLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1135)
Q Consensus 916 ~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1135)
-.. .+....... +++ .-+++..+.||.+ ..+..||..+.+-..... .+... .. ..+...+++
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r----~~--~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH----YG--GCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc----cC--ceEEEECCE
Confidence 322 222111111 122 2367777777732 357888887654211110 01111 11 112233555
Q ss_pred EEEEEE-C--------CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCCCce
Q 001157 988 HLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRF 1051 (1135)
Q Consensus 988 ~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~~~~ 1051 (1135)
..+.|+ + ..+.+||...+.-...............+. -++++++.|+.+ ..|.+||..+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 555542 1 238888984433222211110011111222 377777777654 4678888876643
No 438
>PHA03098 kelch-like protein; Provisional
Probab=93.53 E-value=3 Score=49.81 Aligned_cols=150 Identities=7% Similarity=-0.031 Sum_probs=70.5
Q ss_pred cEEEEEEcC-----CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC--CceEEEEeCCCCceeEEee
Q 001157 512 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 512 ~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~ 584 (1135)
.+++.|+.+ ..+..||..+..-...-..........+..-+++..+.||....+ -..+..||+.+++....-.
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 677777765 346677776544322111111111111122355556666532211 2568899988765433211
Q ss_pred cccCCceeEEEEeCCCCEEEEEecC--------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC---
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD--- 653 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 653 (1135)
.... .....+...++..++.||.+ ..+.+||..+.+-...-..... .....+..-++.+++.|+.+
T Consensus 424 ~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 424 LPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGDKYEY 500 (534)
T ss_pred CCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCCcCCc
Confidence 1111 11111222345566666532 2388899887653322111111 11111122367777777654
Q ss_pred --CcEEEEECCCc
Q 001157 654 --NGIKILANSDG 664 (1135)
Q Consensus 654 --g~v~iw~~~~~ 664 (1135)
+.+.+||..+.
T Consensus 501 ~~~~v~~yd~~~~ 513 (534)
T PHA03098 501 YINEIEVYDDKTN 513 (534)
T ss_pred ccceeEEEeCCCC
Confidence 46778887655
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.42 E-value=11 Score=39.26 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=123.1
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcC------CC-eeEEEecC-----CCCCeEEEEeccCCC----------cc
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~l~~-----h~~~v~~l~~~~~~~----------~~ 512 (1135)
.-+.|+|+|.+. +-++....+...+||.. .. .++-++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 66777778899999986 12 22334432 234566676653321 13
Q ss_pred EEEEEEcCCeEEEEeCCCCCc-----eEEecCC--CCeEEEEEEc--CCCCEEEEEeeCCCCCceEEEEeCCCCceeE--
Q 001157 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP--GNWCTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 581 (1135)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~--~~~v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (1135)
.++.+++||+|.-|...-... ...+... ..-...+++. ..+.+|+.+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997532222 2223211 2233445554 34677777643 47789999854322210
Q ss_pred Eeeccc--C--Cc--e---------eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec----
Q 001157 582 TYSGFR--K--RS--L---------GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (1135)
Q Consensus 582 ~~~~~~--~--~~--v---------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 642 (1135)
.|.... . .+ | +...-.+++..=+.|..-|.|-+||+. ++.++.+...+.....+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 011000 0 00 1 111111222222333345789999985 67777776666666677888765
Q ss_pred --CCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 643 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 643 --~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.|.+|+---.||+|..||..++ +.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667776667999999999988 54555544
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.26 E-value=2.5 Score=47.43 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=81.6
Q ss_pred CCeeEEEEeCCCCcEEEEEe-----------CCc-cEEEEEccc--ce--EeEeecCccCceEEEEEcCCCCeEEEEcCC
Q 001157 882 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1135)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+........+|++.++| ++++ +..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 4567889998 777776542 223 677776442 32 223333333456889999998 5554 444
Q ss_pred CcEEEEeCCCccc---ccceeeecCCCC-CCCCCCceeEEECCCCcEEEE-EEC-------------------CcEEEEe
Q 001157 946 AQLCMWSIDKWEK---LKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1001 (1135)
Q Consensus 946 ~~i~iWd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~-~~d-------------------~~i~vwd 1001 (1135)
...++.|.....+ ....++..+... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333445443211 112233333221 001134678999999987776 421 2344445
Q ss_pred ccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001157 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1135)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d 1038 (1135)
..+..+..+.. + ......++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEec--C-cCCCccceECCCCCEEEEccCC
Confidence 54443333322 2 3345679999999987764433
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=5.3 Score=46.65 Aligned_cols=182 Identities=9% Similarity=0.080 Sum_probs=96.1
Q ss_pred eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe----ecCccCceEEEEEcCCCC
Q 001157 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK----LKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~----l~~h~~~i~~l~~s~d~~ 937 (1135)
.|+||++. |.++..+.-..+.+-.+.|+. +. -|.+...||++++|++... .+.. +......|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 48888874 566555443344888999997 54 5556789999999997632 2222 122333455556656664
Q ss_pred eEEEEcCCCcEE-EEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE--EECCc--EEEEeccCCcccccCC
Q 001157 938 ALVSSGADAQLC-MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQ--ISVYDSKLECSRSWSP 1012 (1135)
Q Consensus 938 ~l~s~~~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~--i~vwd~~~~~~~~~~~ 1012 (1135)
.+.+.+ |.+. +-+.+.... ......++.. ..-.+...-+++..... .-+-. ..++..+.........
T Consensus 141 avlt~~--g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTVS--GQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEecC--CcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 444443 3333 333332110 0111111111 11122222222221111 11111 1122221111111111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 1013 ~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
..+ ...+..+..||+.++|+.=..+|.|.+-+++..+.++.+.
T Consensus 213 ~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 3567889999999999999999999999999888888876
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=92.96 E-value=5.1 Score=46.82 Aligned_cols=183 Identities=10% Similarity=-0.036 Sum_probs=87.7
Q ss_pred CCCEEEEEe-C-----CeEEEEeCCCceEEEEeeCCCCCe-eEEEEeCCCCcEEEEEeCC--ccEEEEEcccceE--eEe
Q 001157 851 NDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED--SSVQIYNVRVDEV--KTK 919 (1135)
Q Consensus 851 dg~~la~~s-d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~~--~~~ 919 (1135)
++..+++|+ + .++..||..+++-...-.-+.... .+++ .- ++.+.+.|+.+ ..+..||..+++- +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455666665 3 247788887754322211111111 1222 23 67888888864 3688888766543 222
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCC---cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCc
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1135)
+......... ..-+|+..+.||.++ ++..||..+.+-.. ...+.... .. ..+..-+|+..++| |.
T Consensus 349 l~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~---~~~m~~~r---~~--~~~~~~~~~IYv~G--G~ 416 (480)
T PHA02790 349 LLKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQF---GPSTYYPH---YK--SCALVFGRRLFLVG--RN 416 (480)
T ss_pred CCCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEEe---CCCCCCcc---cc--ceEEEECCEEEEEC--Cc
Confidence 3211111112 233678888887653 46778877644211 11111000 11 11223455555555 45
Q ss_pred EEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCCC
Q 001157 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETL 1049 (1135)
Q Consensus 997 i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~~ 1049 (1135)
+.+||...+.-....... ......-+..-+|+..+.|+.+ .+|..||..++
T Consensus 417 ~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPI--YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEEecCCCCcEeEcCCCC--CCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 788988444332222111 1111111223477777777754 24556665554
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.93 E-value=1.5 Score=53.10 Aligned_cols=149 Identities=10% Similarity=0.114 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCeEEEE--cCCCcEEEEeCCCccccc---ceeeecCCCCCCCCCCceeEEECCCCc--EEEEEECCcEE
Q 001157 926 RITGLAFSPTLNALVSS--GADAQLCMWSIDKWEKLK---SRFIQAPAGRQSPLVGETKVQFHNDQT--HLLVVHESQIS 998 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~--~~D~~i~iWd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~fspdg~--~l~~~~d~~i~ 998 (1135)
.|..+...+|++..+.. +.+-.|..+|+++..... ...+....--........++.|.|.=. .++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35556667787664443 334479999998644222 111111111111113455677776533 33335788888
Q ss_pred EEecc--CCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE
Q 001157 999 VYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1076 (1135)
Q Consensus 999 vwd~~--~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1135)
|..++ ...+..+. .....++++|+|.|+.++.|-..|++.-|.-. ++...++......+ ..+|+++
T Consensus 182 V~~~~~~~~~v~s~p----~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e-------~yrvl~v 249 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP----VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE-------NYRVLSV 249 (1405)
T ss_pred hhhhhhhhhhhcccC----cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC-------CcceeEE
Confidence 88772 22222221 26789999999999999999999999988655 56556665443332 3689999
Q ss_pred eeCCCCCCEEE
Q 001157 1077 APHPSEPNQIA 1087 (1135)
Q Consensus 1077 ~~sp~~~~~l~ 1087 (1135)
+|.. ...++|
T Consensus 250 ~Wl~-t~eflv 259 (1405)
T KOG3630|consen 250 TWLS-TQEFLV 259 (1405)
T ss_pred EEec-ceeEEE
Confidence 9987 434444
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=6.3 Score=43.00 Aligned_cols=139 Identities=11% Similarity=0.063 Sum_probs=81.4
Q ss_pred CCceeEEECCCCcEEEE-EECCcEEEEeccCC-cccccCC-CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 975 VGETKVQFHNDQTHLLV-VHESQISVYDSKLE-CSRSWSP-KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 975 ~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~-~~~~~~~-~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++|.++.||+|++.||+ -.+++|.+++..+. ....... ....+..|...+|+.. .-+|..+ +..+.+|.......
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhh
Confidence 58999999999999999 67999999998222 2111111 1122556889999877 4455555 44477777665433
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEe-cCCcEEEEecCCCccccCCCCCCCCCCCCCCCCCCCCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLT 1128 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~-~Dg~i~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1135)
..++ +..|+..|--..|.++..-.|++.+ ..+++.=+.++++. ...-|.++.+ +|+.+++++|-
T Consensus 145 slRl----------Vks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~--v~kLPkfe~~-~p~~~~~~kp~ 209 (657)
T KOG2377|consen 145 SLRL----------VKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT--MSKLPKFEIE-LPAAPKSTKPS 209 (657)
T ss_pred hhhh----------hhhcccCccEEEEccccceEeeeccccccccccEEEeece--eeeccceeec-CCCCccCCCCc
Confidence 2222 3467788888999984333344444 44555555555433 2222334443 33334444443
No 445
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=14 Score=43.35 Aligned_cols=178 Identities=9% Similarity=0.059 Sum_probs=85.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE-EcCCCe
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW-DVVAGR 488 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw-d~~~~~ 488 (1135)
.+..+.|+.+..+|+ ...+|++++|++-....-..-..+......|..+.|..+|= .+.+. +|.+.+- +... .
T Consensus 85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~-~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEE-P 158 (829)
T ss_pred CeeeecccCCceEEE-EeccceEEEeecchhhhcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCc-c
Confidence 788999997766554 46999999999875321110001122334566666666553 33333 4444433 2221 1
Q ss_pred eEEEecC-CCCCeEEEEec---cCCCccEEEEEE-cCCeEEEEeCCCCC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 489 KQYTFEG-HEAPVYSVCPH---HKESIQFIFSTA-IDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 489 ~~~~l~~-h~~~v~~l~~~---~~~~~~~l~s~s-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
.++++.. ........+|. |......++-.. ..+ ..+.-.+... ....+......+..++.||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 00011111111 111111111111 000 0111111111 11222223467888999999999987653
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1135)
.|.|.+-+....+....+..........++|..
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 677888888777777777644332333455543
No 446
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.92 E-value=3.7 Score=46.54 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred CCeeEEEeecCCCEEE-EEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC---CC-cEEEEEeCCccEEEEEcc
Q 001157 841 ESAACIALSKNDSYVM-SAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DN-NIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la-~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---~~-~~lasg~~dg~v~iwd~~ 912 (1135)
.++..++|. ||+.++ +.- +|.+++=|- +.+..| ..|..+.|.|- +. .+|| ......|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEE-EeccceEEEEEec
Confidence 367788886 555444 331 455554442 233333 46888999982 22 4554 5567789999875
Q ss_pred -----cceEeEeecCccC---c--eEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 913 -----VDEVKTKLKGHQN---R--ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 913 -----~~~~~~~l~~h~~---~--i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
+++.+.....+-. + -.++.|+|....|+.-.....-.+.++..... .+.....+. +-|.+.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s---rVkaDi~~~----G~IhCACW 163 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS---RVKADIKTS----GLIHCACW 163 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc---eEEEeccCC----ceEEEEEe
Confidence 2333322221111 1 24578999988877665555445666654331 111112221 57899999
Q ss_pred CCCCcEEEEEECCc--EEEEeccCCcc--cccCCCCCCCCCeEEEEEccCCC
Q 001157 983 HNDQTHLLVVHESQ--ISVYDSKLECS--RSWSPKDALPAPISSAIYSCDGL 1030 (1135)
Q Consensus 983 spdg~~l~~~~d~~--i~vwd~~~~~~--~~~~~~~~h~~~i~~~~~s~dg~ 1030 (1135)
..||++|+++-... -++||-..+.+ ..+.+-....+.|.+|.-.-|.+
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsq 215 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQ 215 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccce
Confidence 99999999965444 56888733322 22222223355666665554443
No 447
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=11 Score=47.10 Aligned_cols=145 Identities=12% Similarity=0.194 Sum_probs=93.4
Q ss_pred eCCccEEEEEcccceEeEeecCccCceEEEEE--------cCCCCeEEEEcCCCcEEEEeCCCcccccce--eeecCCCC
Q 001157 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF--------SPTLNALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGR 970 (1135)
Q Consensus 901 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~--------s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~ 970 (1135)
+-|+.+++|+.+++.....+.+-+..|..|.. -|.=+++...+.--.|.++-+.-.+..... ...... -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 35788999999998878888887777777654 233345555555555777766543321111 111100 0
Q ss_pred CCCCCCceeEEECCCCcEEEEEECCcEEEEeccC--------C-c-------------ccccCCC-CCCCCCeEEEEEcc
Q 001157 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL--------E-C-------------SRSWSPK-DALPAPISSAIYSC 1027 (1135)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~--------~-~-------------~~~~~~~-~~h~~~i~~~~~s~ 1027 (1135)
......|.++....+|+.+++|.||. +|.+-- + | +..+... ..+..+|..++...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 01115688999899999999999884 444411 1 1 0011111 24577999999988
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001157 1028 DGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1028 dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
.-..|.+-++.|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999976
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.89 E-value=23 Score=38.95 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=85.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCcc------EEEEEccc--c--eEeE-----eecCccC--------ceEEEEEcCCCC
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVKT-----KLKGHQN--------RITGLAFSPTLN 937 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~~-----~l~~h~~--------~i~~l~~s~d~~ 937 (1135)
-+.++.+++.++++. +++.+++|. ++.+++.. + ..+. .+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999873444 555667777 66665543 1 1111 1111111 234788888888
Q ss_pred eEEEEcCC------CcEEEEeCCCcccccceeeecCC-------CCCCCCCCceeEEECCCCcEEEEE------ECC--c
Q 001157 938 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 996 (1135)
Q Consensus 938 ~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~------~d~--~ 996 (1135)
++++.=.+ ..|+.++.. |.......+.... ..........+++++|||+.|++. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888876 4443222111100 111122577899999999955552 132 1
Q ss_pred -------EEEEec--c--CCcccccCCCCC------CCCCeEEEEEccCCCEEEE
Q 001157 997 -------ISVYDS--K--LECSRSWSPKDA------LPAPISSAIYSCDGLLVYA 1034 (1135)
Q Consensus 997 -------i~vwd~--~--~~~~~~~~~~~~------h~~~i~~~~~s~dg~~l~s 1034 (1135)
++++.. . +.....+..... ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 445444 2 222333221111 3578899999999998775
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.84 E-value=1.5 Score=52.89 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecCC----------Cce--eeccCCCcccCccccCCCCCCcEEEeeCCCC--
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRF--RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE-- 1082 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-- 1082 (1135)
.-.|..+.++++|++||..|..| |.|-.+.. |.. .|+.-. .-.......++..+..+.|+|..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~--v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVP--VDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEE--echhhccCCCCceEEEEEEcCCCCC
Confidence 45788999999999999888654 55555531 111 222110 11112233566889999999952
Q ss_pred CCEEEEEecCCcEEEEecCCCc
Q 001157 1083 PNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1083 ~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+..|++=+.|+++|+||+...+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 5788888999999999998665
No 450
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.81 E-value=0.035 Score=60.10 Aligned_cols=241 Identities=15% Similarity=0.172 Sum_probs=135.2
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
...+.+.+..++.++.+..+..||-.. +.+.. .. . .+....++|..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le-~n---~-tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE-LN---P-TGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc-cC---C-chhHhhhhhccccchhh
Confidence 445667777788888887777776322 11111 11 1 45566788888888777
Q ss_pred EEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcC
Q 001157 857 SAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1135)
Q Consensus 857 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 934 (1135)
+.. .+.+.+||+.+.....--.+.+..-.-+.|++ +...++.|...|.+.|++..+.+.+.+.-.|..+++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 665 68899999986432211112222233388999 899999999999999999888776666666999999999998
Q ss_pred CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC--CCCCceeEEECCCCcEEEEEECCcEEEE--ec--cCCcc-
Q 001157 935 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHLLVVHESQISVY--DS--KLECS- 1007 (1135)
Q Consensus 935 d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l~~~~d~~i~vw--d~--~~~~~- 1007 (1135)
.+ +.+.++.|..+.+-...+.... +....+... ...-...=.|..-|..+...-.+.+.+. .+ ..+..
T Consensus 170 Ed-~vil~dcd~~L~v~~qegeta~----ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSVTTQEGETAS----LTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred cc-eeeecCcHHHHHHhhhccceee----eeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccc
Confidence 76 5555666655544433321110 111111000 0000001122233333333222211111 11 01111
Q ss_pred cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 1008 ~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
..+... .+.+.++.|--||.++ -+..-|.|..-.+.+++....+
T Consensus 245 l~fq~~---~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 245 LQFQEK---YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred eEeeec---CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHH
Confidence 122222 5667788887787644 4666677777777777665443
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=5.7 Score=43.29 Aligned_cols=154 Identities=8% Similarity=0.059 Sum_probs=93.6
Q ss_pred CceEEEEeeCCCC------CeeEEEEeCCCCcEEEEEeCCccEEEEEcccce---EeEeecCccCceEEEEEcCCCCeEE
Q 001157 870 TFKVMTMFMSPPP------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALV 940 (1135)
Q Consensus 870 ~~~~~~~~~~~~~------~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~---~~~~l~~h~~~i~~l~~s~d~~~l~ 940 (1135)
+|.....+..|.. .-+.+-|.. .++.| .+...|.+.-|-+..-. ++..-....++|.++.||+|.+.||
T Consensus 5 sGalyhelihhPslfcnipesngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilA 82 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILA 82 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEE
Confidence 4444455544432 234566654 34433 34445556666654321 2222223456899999999999999
Q ss_pred EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec--cCCcccccCCCCCCCC
Q 001157 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPA 1018 (1135)
Q Consensus 941 s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~--~~~~~~~~~~~~~h~~ 1018 (1135)
.--.|++|.+.+....+........ +......|.+.+|+.. .-+|.-.+..+.+|.. ..+.++.. ..|..
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~ 154 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNL 154 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhccc
Confidence 9999999999998543322111111 1111145889999877 5566667777888877 44444443 33477
Q ss_pred CeEEEEEccCCCEEE
Q 001157 1019 PISSAIYSCDGLLVY 1033 (1135)
Q Consensus 1019 ~i~~~~~s~dg~~l~ 1033 (1135)
.|.--.|.++-+.+.
T Consensus 155 nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 155 NVNWYMYCPETAVIL 169 (657)
T ss_pred CccEEEEccccceEe
Confidence 888888888887544
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.78 E-value=0.11 Score=60.59 Aligned_cols=199 Identities=11% Similarity=0.167 Sum_probs=113.1
Q ss_pred CCCeeEEEeec-CCCEEEEEe-CCeEEEEeCC--CceEEEEee-----CCCCCeeEEEEeCC--CCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSK-NDSYVMSAS-GGKVSLFNMM--TFKVMTMFM-----SPPPAATFLAFHPQ--DNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~--~~~~~~~~~-----~~~~~v~~l~~sp~--~~~~lasg~~dg~v~i 908 (1135)
.+.+..+.|.. +-..++ . -|.+.|||+. .|+....+. .....+.-+.|.|- ..-++..+..+++|++
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 44555666633 111111 2 2678888876 344333322 11223344444431 5577888888999998
Q ss_pred EEcccceEeEeecCccCceEEEE-----------EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCc
Q 001157 909 YNVRVDEVKTKLKGHQNRITGLA-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 977 (1135)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~-----------~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v 977 (1135)
.+..+... ..+.+|+..++.++ .||||+.+|+++.||.+++|.+.-..+....++.....|.. .
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~-- 284 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--H-- 284 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--C--
Confidence 77665443 45667877766554 49999999999999999999876544444445555554442 1
Q ss_pred eeEEECCC---------Cc--EEEEEE--CCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCC------------E
Q 001157 978 TKVQFHND---------QT--HLLVVH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------L 1031 (1135)
Q Consensus 978 ~~~~fspd---------g~--~l~~~~--d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~------------~ 1031 (1135)
..+||..+ +. +++++. +..+++|.- ..+|+..+. ...|..+. -+||+ .
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHH
Confidence 22333222 22 333333 456888887 666663222 23344444 33443 2
Q ss_pred EEEEecCCcEEEEecCCCce
Q 001157 1032 VYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++..+-|+.|.+|.-..-..
T Consensus 359 ~v~r~v~~~i~~~qn~~a~~ 378 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRKAQP 378 (1283)
T ss_pred HHHhhhHHHHHHhhcchhhh
Confidence 33456688899996654333
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=6.1 Score=38.46 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=82.8
Q ss_pred ccEEEEEEcC--CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC
Q 001157 511 IQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 511 ~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
|.++.+.+.- ..|++||+.+++...........+..=-...-|.++..-.. .++.-..+|..+.+.+..+.-...
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCCc
Confidence 3667776654 45999999988877654443222211111222344443332 477788899888887776665433
Q ss_pred CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC---CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG---LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+ .. ...|+..|+.+....+++.-|.++.....++..... ...++-+.|- ||.+.|-.-.+..|...+.++|
T Consensus 133 G--Wg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 133 G--WG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred c--ee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 2 22 344566677776677888888777655544432211 1223344442 4666665555556666666666
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=90.82 E-value=9.4 Score=44.66 Aligned_cols=184 Identities=7% Similarity=-0.109 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC--CcEEEEEcCCCeeEE
Q 001157 419 DGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (1135)
Q Consensus 419 dg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~ 491 (1135)
++..+++|+.++ .+..||..+++-.. ...+....... +++ .-++. +.+.||.+ ..+..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 455566666542 46678877654221 11222111112 222 23555 55666653 467888876654332
Q ss_pred --EecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 492 --TFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 492 --~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+.........+.. +|.+.+.|+.++ .+..||.++..-...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 22111111112222 336777777553 466787765433221111111111112223444444443
Q ss_pred ceEEEEeCCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCC
Q 001157 567 SHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNM 620 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 620 (1135)
.+.+||..+++....-.-.. ..... ++ .-+++..+.||.+ ..+..||..+.
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 26678887766543221111 10122 22 2355666667643 23555555443
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=90.57 E-value=31 Score=38.05 Aligned_cols=152 Identities=6% Similarity=-0.039 Sum_probs=81.9
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
...+..+.+.+++ .+ +..+..|.+..- .+.+.. ..........++++.+.++++.++++. .+.+++-..
T Consensus 172 ~g~~~~i~~~~~g--~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG--KY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC--eE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 4567788876643 44 455555655431 122221 112233455889999999998877653 344443223
Q ss_pred CCCceeEEeecc---cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC-CCCcCeEEEecCCCEEEEE
Q 001157 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 650 (1135)
..|..-...... ....+..+.+.+++..++ ++.+|.+. .....++.-........ ....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 112467788888776544 55677665 45555555444432111 12456777777666655 5
Q ss_pred eCCCcEEEEE
Q 001157 651 TSDNGIKILA 660 (1135)
Q Consensus 651 ~~dg~v~iw~ 660 (1135)
+..|.|..|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677877665
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.53 E-value=0.86 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 001157 409 ISVNRCVWGPDG---LMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 409 ~~V~~v~~spdg---~~la~~~~dg~i~iwd~~~ 439 (1135)
+.|.++.|||++ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5999998999999999985
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.46 E-value=56 Score=40.83 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=103.4
Q ss_pred CCCeeEEEee---c----CCCEEEEEeCCeEEEEeCCCc---------------eEEEEeeC---CCCCeeEEEEeCCCC
Q 001157 840 EESAACIALS---K----NDSYVMSASGGKVSLFNMMTF---------------KVMTMFMS---PPPAATFLAFHPQDN 894 (1135)
Q Consensus 840 ~~~v~~l~~s---~----dg~~la~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~l~~sp~~~ 894 (1135)
..+|..|+|+ . ..++|++-....+.|+...-. .++..+.. ...+...++|+|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 6789999998 2 235777777788888872211 22333331 223567788888677
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
..||+.+..|...||++..+.. .+.. .+-+.....|+| +.|.+.-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~-----~~~~-----------~~~~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPK-----RKSS-----------NLRLSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEeccccc-----cCCc-----------ceeeccCCCccc-cCCCccc------------------
Confidence 7888888888888888721110 0101 111222222333 2222210
Q ss_pred CCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEecCCC
Q 001157 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d--g~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
+.-..+.|.++-..|++++...+.++|+.................|..+.-+++ +..++.. ...|...++.+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 233578899999999999999999999954443221222223678999998887 3333332 367888888763
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.07 E-value=17 Score=43.40 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=74.9
Q ss_pred eeEEEEcC--CCCEEEEEeCCCeEEEEEcCC-------C----------CceeeeeEeecCCCCeeEEEEe--cCCCceE
Q 001157 411 VNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQLC 469 (1135)
Q Consensus 411 V~~v~~sp--dg~~la~~~~dg~i~iwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~ 469 (1135)
|+.+.... +...|+.|.+||.|.+|.+++ . ..+++...+. -...++++++. ...+ +
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--l 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--L 179 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--E
Confidence 55555443 566899999999999997631 0 0111222222 24478999998 5555 7
Q ss_pred EEEEcCCCcEEEEEcCCC--eeEE-EecCCCCCeEEEEeccCCC---cc-EEEEEEcCCeEEEEeC
Q 001157 470 IVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~--~~~~-~l~~h~~~v~~l~~~~~~~---~~-~l~s~s~dg~i~~wd~ 528 (1135)
||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888887755432 2111 1112667789999887652 32 7888999999999887
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.95 E-value=0.91 Score=31.65 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCeeEEEeecCCC--eEEEEEeCCCcEEEEEcCCc
Q 001157 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (1135)
Q Consensus 347 ~~V~~~~fspdg~--~lla~gs~dg~v~iwd~~~~ 379 (1135)
+.|.++.|||+.. .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997543 47888877899999999853
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.69 E-value=23 Score=37.95 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CeeEEEeecCCCEEEEEeCC-------------eEEEEeCCCceEEEEee------CCCCCeeEEEEeCCCC----cEEE
Q 001157 842 SAACIALSKNDSYVMSASGG-------------KVSLFNMMTFKVMTMFM------SPPPAATFLAFHPQDN----NIIA 898 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg-------------~i~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~----~~la 898 (1135)
.|..+.+.++|++-+.=+.. +|.+||+.+++.++++. ...+....+.+...++ .++.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Q ss_pred EEeCC-ccEEEEEcccceEeEeecCccCc-------------------eEEEEEcC---CCCeEEEEcCCCcEEEEeCCC
Q 001157 899 IGMED-SSVQIYNVRVDEVKTKLKGHQNR-------------------ITGLAFSP---TLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 899 sg~~d-g~v~iwd~~~~~~~~~l~~h~~~-------------------i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
..+.. +-|.|+|+.+++.-+.+..+... +.+++.+| ++++|.-..-.+ -++|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Q ss_pred cccccceeeecC------CCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccC----CcccccCCCCCCCCCeEEEE
Q 001157 956 WEKLKSRFIQAP------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSAI 1024 (1135)
Q Consensus 956 ~~~~~~~~~~~~------~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~----~~~~~~~~~~~h~~~i~~~~ 1024 (1135)
.-.......... ..--........++++++|..+++ ...+.|..|+..+ +....+......-.-..+++
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Q ss_pred Ecc--CCCEEEEEec
Q 001157 1025 YSC--DGLLVYAGFC 1037 (1135)
Q Consensus 1025 ~s~--dg~~l~s~~~ 1037 (1135)
+.+ +|.+.+.++.
T Consensus 241 i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 241 IDPEGDGYLWVLSNR 255 (287)
T ss_dssp E-T--TS-EEEEE-S
T ss_pred eccccCceEEEEECc
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.47 E-value=1.4 Score=30.34 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCC--CcEEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~d--g~v~iw 374 (1135)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999999888888777 776666
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.45 E-value=15 Score=42.51 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=56.5
Q ss_pred EeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC
Q 001157 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 866 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1135)
.|+-.|.....+ .|.+.|--+.... .+..|..-+..-.+.++|+.+.+..-.+. -.+-+.|-|....|+.-+.|
T Consensus 323 vdli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 444444443333 4888888888887 55556556666678889988765322221 13457899988899988888
Q ss_pred CcEEEEeCCCccc
Q 001157 946 AQLCMWSIDKWEK 958 (1135)
Q Consensus 946 ~~i~iWd~~~~~~ 958 (1135)
.....|+++..+.
T Consensus 397 nl~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQ 409 (1636)
T ss_pred ceEEEecCCcchh
Confidence 8555556766554
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.35 E-value=13 Score=41.40 Aligned_cols=149 Identities=10% Similarity=0.104 Sum_probs=89.5
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC------CccEEEEEEcCCeEEEEeCCCCCce
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLGSR 534 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~~~ 534 (1135)
...+...+++..|+....++--|++.|+.+..+.-|... -+.|.|.. +.+.|+ |-.+..|.-.|.+..+..
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNK 550 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNK 550 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCc
Confidence 333344445566777778888899999999988877665 34555542 223444 444555655676654433
Q ss_pred EEecCCCCeEEEEEEc----CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC
Q 001157 535 VDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 535 ~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1135)
..........+.-.|+ ....++++++. .|-|++||.-.-+....+++..+ .|..+..+.+|+++++.+. .
T Consensus 551 i~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred eeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec-c
Confidence 3222222222222222 23457888764 55699999654444445555555 7888999999999988764 3
Q ss_pred eEEEEECC
Q 001157 611 QIKFWDMD 618 (1135)
Q Consensus 611 ~i~iwd~~ 618 (1135)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 55555543
No 464
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.22 E-value=47 Score=43.25 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|-..++.|.-+|+|.++= =.|+.++.||..... |... -..-..+++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lR---lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLR---LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEE---eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 334566667777776422 246778888766543 3210 011233455666666777666
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC------ee--EEEecCC
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~--~~~l~~h 496 (1135)
=+.+. |-|+..+.... ..-..|.+...+++|.- .+.++-....+.+|++... +. .-.+.+-
T Consensus 419 -k~~~~---l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDDT---LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCCc---eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 22221 34555443211 11235777888899983 3667777778899998753 11 1233344
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1135)
.....+|.+++ ..|+.+..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 44566677754 3688888888887766543
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.09 E-value=44 Score=37.63 Aligned_cols=197 Identities=12% Similarity=0.022 Sum_probs=105.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC-Ce
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV 500 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~-~v 500 (1135)
.+.++..+|.|.-.|..++..+...... +....+.+-.+..+|+ |+.++.++.++..|..+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777643211111 0112233333334776 77888899999999889999887765551 11
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
..-... .+ ..+..++.++.+.-.|..++..+....... ..+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 111111 11 344444467888777777777665543322 111111112222 33333221 1 345777788888
Q ss_pred ceeEEeecccCCc---e------eEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 578 AIKRTYSGFRKRS---L------GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 578 ~~~~~~~~~~~~~---v------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
............. + ..-...-+ ..++.++.++.+...+..+++.+-.....
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7776643222111 1 00001111 23356667788999999999988887753
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.45 E-value=1.9 Score=46.69 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=96.2
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEE-e-eC-CC---CCee-EEEEeCCCCcEEEEEeCCccEEEE-Ec
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-F-MS-PP---PAAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 911 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~-~-~~-~~---~~v~-~l~~sp~~~~~lasg~~dg~v~iw-d~ 911 (1135)
...+..+-..|||+.+.+-+..++.++++.+...... + .. +. ..|+ ++..-. ++.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 5678889999999999998888999999876443221 1 11 11 1233 233334 67778889999999887 44
Q ss_pred ccc-e----EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 912 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 912 ~~~-~----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
..+ + .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.+ +.... ...+..+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l----L~~~~-----~~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL----LFERA-----YQAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce----ehhhh-----hcCcceeeeCccc
Confidence 322 1 12222222233443332223355777888888887765543321 11110 1345789999999
Q ss_pred cEEEEEECCcEEEEec
Q 001157 987 THLLVVHESQISVYDS 1002 (1135)
Q Consensus 987 ~~l~~~~d~~i~vwd~ 1002 (1135)
.++++-+.|.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999988
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.35 E-value=36 Score=38.88 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce--EeEeec-----CccCceEEEEEcCCC------CeEEEEc----
Q 001157 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLK-----GHQNRITGLAFSPTL------NALVSSG---- 943 (1135)
Q Consensus 881 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--~~~~l~-----~h~~~i~~l~~s~d~------~~l~s~~---- 943 (1135)
-.....|+|.| ++++|++--..|.|++++..++. .+..+. .-.+....|+++|+- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 35668899999 88887766557999999865543 222121 125668899999884 2333221
Q ss_pred ------CCCcEEEEeCCCc--ccc-cceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC
Q 001157 944 ------ADAQLCMWSIDKW--EKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1135)
Q Consensus 944 ------~D~~i~iWd~~~~--~~~-~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1135)
....|.-|.+... ... ...++....... ...-..++|.|||.+.++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECC
Confidence 1233555555421 111 111222221111 123468899999997777444
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.08 E-value=21 Score=35.52 Aligned_cols=112 Identities=15% Similarity=0.279 Sum_probs=67.9
Q ss_pred eeEEEeecCCCEEEEEeCCeEEEEeCC--CceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc------cEEEE---Ec
Q 001157 843 AACIALSKNDSYVMSASGGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS------SVQIY---NV 911 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~sdg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg------~v~iw---d~ 911 (1135)
...++-+..+.++++.+.+.|.+|++. ..+.+.+|..- +.|..++++. .|++|++--.+. .+|+| ..
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 344555443445555668889999988 45667777744 8899999999 899999865332 55665 22
Q ss_pred c--cceEeE-eecCc---------------------cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc
Q 001157 912 R--VDEVKT-KLKGH---------------------QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 912 ~--~~~~~~-~l~~h---------------------~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
. ..+++. ++-|| ...+.+++-.|-..-|+.|+ ++++.+|.+....
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 2 112222 22232 22355666666443444444 4569999887543
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=5 Score=49.99 Aligned_cols=138 Identities=14% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE--------EcCCCCEEEEEeCCCeEEEEEcC
Q 001157 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV--------WGPDGLMLGVAFSKHIVHLYTYN 438 (1135)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--------~spdg~~la~~~~dg~i~iwd~~ 438 (1135)
.|+.+.+|+++++..... +.+-+..|..|. |-|.=++|.+-..--.|.++-+.
T Consensus 97 iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 488999999998654432 333444454444 33344455555566667776554
Q ss_pred CCCceeee------eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC----CC---e-e---------------
Q 001157 439 PTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG---R-K--------------- 489 (1135)
Q Consensus 439 ~~~~~~~~------~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~----~~---~-~--------------- 489 (1135)
-.+..... ..+......|+|+....+|+ .++ +|.|| .+|.+. +| + +
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 32211111 12222355789999888887 444 55566 555542 11 1 1
Q ss_pred -EEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC
Q 001157 490 -QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 490 -~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1135)
+-.+. .+..+|..+.+.... +.+.+-+..|+|.+||+..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 11223 567799999986554 7899999999999999875
No 470
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.67 E-value=9.3 Score=42.36 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=92.2
Q ss_pred EEEeCCCCcEEE-EEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC--------CeEEEEcCCCcEEEEeCCC-c
Q 001157 887 LAFHPQDNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSIDK-W 956 (1135)
Q Consensus 887 l~~sp~~~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~--------~~l~s~~~D~~i~iWd~~~-~ 956 (1135)
+-.+.++..+|. .|..-..++--|++.|+.+....-|.+. -+.|.|+. +.|+-.+ +..|.--|..- |
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence 333333555544 4556667888899999999999988775 46777754 3455444 44444444432 2
Q ss_pred ccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.++.....+...+. ....+..-...| ++++ +..|.|++||--+...+...+.. +..|..+..+.+|+++++.
T Consensus 549 NKi~v~esKdY~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 549 NKIKVVESKDYKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILAT 621 (776)
T ss_pred Cceeeeeehhcccc----ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEe
Confidence 22111111111111 112233333344 5555 67899999998444444443332 7789999999999998876
Q ss_pred ecCCcEEEEecC--CCceeecc
Q 001157 1036 FCDGAIGVFDAE--TLRFRCRI 1055 (1135)
Q Consensus 1036 ~~dg~V~vwd~~--~~~~~~~~ 1055 (1135)
+ ...+.+-|+. .|+...++
T Consensus 622 C-k~yllL~d~~ik~g~~aGr~ 642 (776)
T COG5167 622 C-KNYLLLTDVPIKYGQPAGRD 642 (776)
T ss_pred e-cceEEEEecccccCCccccc
Confidence 6 4577777764 34444444
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.66 E-value=50 Score=36.55 Aligned_cols=188 Identities=12% Similarity=0.145 Sum_probs=103.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc--CCCccE--EEEEE-cC---CeEEEEeCCCCCc-eEEecC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~--~~~~~~--l~s~s-~d---g~i~~wd~~~~~~-~~~~~~ 539 (1135)
+|+....++-+.+||+ +|+.++.+. .+..+.+..-. .-+|+. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778889999996 577777774 34455544321 111122 33443 32 5799998764322 222221
Q ss_pred -------CCCeEEEEEE--cC-CCCEEEEEeeCCCCCceEEEEeCC---CC----ceeEEeecccCCceeEEEEeCCCCE
Q 001157 540 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 540 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1135)
....++.+|+ ++ +|.+.+.... .+|.+..|.+. .+ +.++.|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1224667776 33 4565554442 35666666553 33 4677887654 5788889988899
Q ss_pred EEEEecCCeEEEEECCC-----CeeeEEEeCCCCCCCcCeEEEec--CCC-EE-EEEeCCCcEEEEECCCc
Q 001157 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFNK--EGS-LL-AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~~~-~l-~~~~~dg~v~iw~~~~~ 664 (1135)
|+.+-++.-|.-|+.+- ++.+.......-...|-.+++-. ++. +| ++.-.+++..+|+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888752 22232222222233566666643 433 44 44444778999998754
No 472
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.39 E-value=56 Score=36.85 Aligned_cols=68 Identities=9% Similarity=-0.121 Sum_probs=31.0
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----------CcEEEEEcC
Q 001157 419 DGLMLGVAF-SKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----------KMIKVWDVV 485 (1135)
Q Consensus 419 dg~~la~~~-~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----------~~i~iwd~~ 485 (1135)
+++..+.++ .+..+.++|+... ........+.. ..........-++. +.+.|+.+ ..+..||..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~-~~r~~~~~v~~~~~--IYV~GG~~~~~~~~~~~~~~~v~~YD~~ 114 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG-GPREQAVAAFIDGK--LYVFGGIGKTNSEGSPQVFDDVYKYDPK 114 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC-CCcccceEEEECCE--EEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence 555555444 3455677777542 22222112211 11111112233454 55556543 247778877
Q ss_pred CCee
Q 001157 486 AGRK 489 (1135)
Q Consensus 486 ~~~~ 489 (1135)
+.+.
T Consensus 115 ~n~W 118 (376)
T PRK14131 115 TNSW 118 (376)
T ss_pred CCEE
Confidence 6654
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.35 E-value=50 Score=36.28 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=68.3
Q ss_pred CeeEEEeecCCCEEEEEe-C------CeEEEEeCCCceEEEEee---------------CCCCCeeEEEEeCCCCcEEEE
Q 001157 842 SAACIALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFM---------------SPPPAATFLAFHPQDNNIIAI 899 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~~~las 899 (1135)
...++++.++|.++++.- + ..|..++.. |+.+..+. ..+...-+|+++| +++.|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 455788888888888775 6 678888876 66655442 1234578999999 7775555
Q ss_pred EeC-----Cc--c-------EEEE--Eccc-ce----EeEeecC-----ccCceEEEEEcCCCCeEEEE-----cCCCcE
Q 001157 900 GME-----DS--S-------VQIY--NVRV-DE----VKTKLKG-----HQNRITGLAFSPTLNALVSS-----GADAQL 948 (1135)
Q Consensus 900 g~~-----dg--~-------v~iw--d~~~-~~----~~~~l~~-----h~~~i~~l~~s~d~~~l~s~-----~~D~~i 948 (1135)
+.+ |+ . ++|+ |..+ ++ ....+.. ....|+.+.+-+++++|+-- +....+
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ 243 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK 243 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence 432 22 1 4554 4443 22 2223332 45678999999999877742 133455
Q ss_pred EEEeCC
Q 001157 949 CMWSID 954 (1135)
Q Consensus 949 ~iWd~~ 954 (1135)
+|+.+.
T Consensus 244 ri~~v~ 249 (326)
T PF13449_consen 244 RIYRVD 249 (326)
T ss_pred EEEEEE
Confidence 555544
No 474
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.89 E-value=22 Score=41.88 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=72.0
Q ss_pred eeEEECCCCcEEEE-EECC-----cEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 978 TKVQFHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 978 ~~~~fspdg~~l~~-~~d~-----~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
..+.|-|.|..+++ +.|| .|..+..++-....+....+....+..++|.-....++.+ ..+.|.+|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 46899999999999 5443 3667766655544443333335667778887777666654 356899997766443
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCCCCCCCCCCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPL 1118 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~~~~~~~~~~ 1118 (1135)
.-.. ..+.| .+.-+.|+|...+.|.-.+. +.|-.-+++-...+-...-|+|+|..
T Consensus 329 YLK~--e~~ip---------~~s~vkwhpe~~nTl~f~d~-~~I~~V~f~~k~~~~~s~~p~d~g~~ 383 (1243)
T COG5290 329 YLKV--ERQIP---------GISYVKWHPEEKNTLLFRDG-ERILRVFFSEKKTHHGSEYPFDNGTS 383 (1243)
T ss_pred EEEE--eecCC---------CcceeeeccccCcEEEEecC-CeEEEEEeehhhhcCCcccCccCCce
Confidence 2211 11222 23357899965555554332 33333333222222222356777655
No 475
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.71 E-value=3.6 Score=40.27 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.5
Q ss_pred CCeeEEEEcCCCC------EEEEEeCCCeEEEEEcCC
Q 001157 409 ISVNRCVWGPDGL------MLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 409 ~~V~~v~~spdg~------~la~~~~dg~i~iwd~~~ 439 (1135)
..|.+++|||-|- +||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3799999999542 788889999999998664
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.40 E-value=26 Score=31.94 Aligned_cols=122 Identities=7% Similarity=0.061 Sum_probs=70.3
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-----CCCE
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSY 854 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-----dg~~ 854 (1135)
|......|++++..|.|.|++.......... ....+++ +.- ...|++++-.+ +...
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~------------LNi----n~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISF------------LNI----NQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeE------------EEC----CCceEEEEEEecCCCCCcCE
Confidence 3334445777778888888865432211100 0000111 111 56777776544 4568
Q ss_pred EEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC--CCcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 855 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 855 la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
|+.|+...+..||+....-+..-. -.+.|.++.+-.- ...-|+..+-+..|.-||.+..+...+..
T Consensus 67 LliGt~t~llaYDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 67 LLIGTQTSLLAYDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred EEEeccceEEEEEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 899999999999998766543333 3366777776421 12234444456678888877666655543
No 477
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.35 E-value=57 Score=35.87 Aligned_cols=69 Identities=9% Similarity=-0.028 Sum_probs=34.4
Q ss_pred cEEEEEEc-----CCeEEEEeCCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAI-----DGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+.+.|+. ...+..||+.+.+-...-.... ......+..-+++..+.++.+......+..||+.+.+..
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 56666664 2457778877554322111111 122222233456666666643222233678898876643
No 478
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.32 E-value=2.7 Score=42.79 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=53.2
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCccccccee-e-ecCCCC----CCCCCCceeEEECCCCcEEEEEECCcEEEEeccCC
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRF-I-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~-~-~~~~~~----~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~ 1005 (1135)
+..++++|++.+.+|.+++||+.+++...... + ..+... ......|..+.++.+|.-+++-.+|....|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 34578899999999999999999977543320 0 001100 01225788899999999888877888999997555
Q ss_pred cc
Q 001157 1006 CS 1007 (1135)
Q Consensus 1006 ~~ 1007 (1135)
+-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
No 479
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.26 E-value=0.22 Score=54.26 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=96.8
Q ss_pred eecCCCCCCceeecCC------cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecc
Q 001157 319 SFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392 (1135)
Q Consensus 319 ~~~~~~~~~~~~~~d~------~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~ 392 (1135)
.+-+.++.+++...+. ..++.+-.+...+.-..++|.-+|..+++.+-..+.+.|||+.+...-. +
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L----- 112 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L----- 112 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H-----
Confidence 3444455555554433 3455555666677788899999998777777788999999997643211 0
Q ss_pred cccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEE
Q 001157 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s 472 (1135)
..-..|.... +.|++.+..++.+...|.+.|++..+.+.+. ....|...++++++.+.+. .+.
T Consensus 113 ---------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil 175 (615)
T KOG2247|consen 113 ---------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VIL 175 (615)
T ss_pred ---------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eee
Confidence 0011222223 7899999999999999999999988865543 3333999999999999885 677
Q ss_pred EcCCCcEEEEE
Q 001157 473 CGDDKMIKVWD 483 (1135)
Q Consensus 473 ~~~d~~i~iwd 483 (1135)
++.|..+.+-.
T Consensus 176 ~dcd~~L~v~~ 186 (615)
T KOG2247|consen 176 CDCDNTLSVTT 186 (615)
T ss_pred cCcHHHHHHhh
Confidence 77777665543
No 480
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.21 E-value=1 Score=52.97 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=92.5
Q ss_pred CCCeeEEEeec----CCCeEEEEEeCCCcEEEEEcC--CccccccccceeecccccccccccccccccCCCeeEEEEcC-
Q 001157 346 GSNVMSMDFHP----QQQTILLVGTNVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1135)
Q Consensus 346 ~~~V~~~~fsp----dg~~lla~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 418 (1135)
.++|-.++|-. .+. ..-|...||+++ .|+......+. +...-...+.-|.|.|
T Consensus 132 ~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLVSWCPI 191 (1283)
T ss_pred CCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEe--------------ecCcCCCCcceeeeccc
Confidence 45677777743 332 223578899876 34433321111 1222333344455544
Q ss_pred --CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEE-----------EecCCCceEEEEEcCCCcEEEEEcC
Q 001157 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA-----------FAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 419 --dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+..++..+-.++.|++.++++... ..+.+|...+..++ .||||+ .++++..||.++.|-+.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeee
Confidence 677888888889999888776432 13456887777765 478998 88999999988877653
Q ss_pred -----CCeeEEEecCCC-CCeEEEEeccCCC-----c--cEEEEEEc-CCeEEEEeCCCCCce
Q 001157 486 -----AGRKQYTFEGHE-APVYSVCPHHKES-----I--QFIFSTAI-DGKIKAWLYDYLGSR 534 (1135)
Q Consensus 486 -----~~~~~~~l~~h~-~~v~~l~~~~~~~-----~--~~l~s~s~-dg~i~~wd~~~~~~~ 534 (1135)
.-++++..+.|. .+-.|.-++.... + .++++++. +..+++|.-..-++.
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 234455556665 2222222221110 0 23444443 455888865544444
No 481
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=86.09 E-value=54 Score=42.73 Aligned_cols=134 Identities=9% Similarity=0.063 Sum_probs=75.2
Q ss_pred EeCCccEEEEEcccceE-------eEee---------cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccccee
Q 001157 900 GMEDSSVQIYNVRVDEV-------KTKL---------KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 900 g~~dg~v~iwd~~~~~~-------~~~l---------~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~ 963 (1135)
|-.||.|.-||-.+..- +..| --..+.|..|.+++...-++-+. +..+.+=-..+ +......
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r~-~~e~G~~ 696 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRRN-KVELGDA 696 (1774)
T ss_pred eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-CcccccccccC-CCCCCcc
Confidence 44579999998654311 1111 11345567777776655554332 22122111111 1111112
Q ss_pred eecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001157 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~v 1043 (1135)
+..+.. ..|+.++.-.+.++++....|.+..+.-.+..+. ....+-.+.|..+++.....+.| -..+|.++-
T Consensus 697 l~Gl~~-----~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~--l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 697 LEGLED-----RVITAFAVVNDNKFVALDDQGDLTAHQKPGRPVP--LSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred ccCCCc-----CcceeEEEEcCCceEEeccCCccccccCCCCCcc--CCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 333331 5788999988888888888888888884333222 12234478999999988866555 455787665
No 482
>PRK13613 lipoprotein LpqB; Provisional
Probab=85.94 E-value=72 Score=38.13 Aligned_cols=193 Identities=11% Similarity=0.008 Sum_probs=101.7
Q ss_pred CeeEEEeecCCCEEEEEe-CC-eEEEEeCCCceE----E-EEeeCCCCCeeEEEEeCCCCcEEEE-EeCCc--cEEEEEc
Q 001157 842 SAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV----M-TMFMSPPPAATFLAFHPQDNNIIAI-GMEDS--SVQIYNV 911 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg-~i~iwd~~~~~~----~-~~~~~~~~~v~~l~~sp~~~~~las-g~~dg--~v~iwd~ 911 (1135)
.+.+++.|+++..+|..+ ++ .+.+..+..+.. . ..+. ....+.-.|.+ ++.+-.. ++.++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC
Confidence 678899999999988877 44 466665533322 1 1122 23466667777 4433322 11222 2555543
Q ss_pred ccceEeEe-ecCcc-CceEEEEEcCCCCeEEEEcC---CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 912 RVDEVKTK-LKGHQ-NRITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 912 ~~~~~~~~-l~~h~-~~i~~l~~s~d~~~l~s~~~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
+++.... ..... ..|+.+..|+||..++.... .+.|.+=-+.....-. ..+..+..-......+..++|..++
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCC
Confidence 4443221 11222 37999999999987665432 3556655554322111 1111111000111358899999999
Q ss_pred cEEEEE--ECCcEEEEec--cCCcccccCCCCCCCCCeEEEEEccCCC-EEEEEecCCcE
Q 001157 987 THLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1041 (1135)
Q Consensus 987 ~~l~~~--~d~~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~~~dg~V 1041 (1135)
.+++.+ .++...+|-+ .+....... .+.-..+.+++-..+.+ .|+.+..++.|
T Consensus 519 sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 987754 3334555555 433322111 11245577777777666 45553555554
No 483
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.60 E-value=28 Score=41.64 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=71.4
Q ss_pred CeeEEEeec--CCCEEEEEe-CCeEEEEeCCC-------c----e---------EEEEeeCCCCCeeEEEEe--CCCCcE
Q 001157 842 SAACIALSK--NDSYVMSAS-GGKVSLFNMMT-------F----K---------VMTMFMSPPPAATFLAFH--PQDNNI 896 (1135)
Q Consensus 842 ~v~~l~~s~--dg~~la~~s-dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--p~~~~~ 896 (1135)
.|..+.+.. +...|+.+. ||.|.+|.+++ . + +...+. -...+..++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 455555443 445666665 89999997632 1 0 011111 23467889998 6 7889
Q ss_pred EEEEeCCccEEEEEcccc--eEeE-eecCccCceEEEEEcCCC------CeEEEEcCCCcEEEEeC
Q 001157 897 IAIGMEDSSVQIYNVRVD--EVKT-KLKGHQNRITGLAFSPTL------NALVSSGADAQLCMWSI 953 (1135)
Q Consensus 897 lasg~~dg~v~iwd~~~~--~~~~-~l~~h~~~i~~l~~s~d~------~~l~s~~~D~~i~iWd~ 953 (1135)
||+++....|.||-.... +... .-..|...|-+|+|-++. .+|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999988888888765542 1111 111256678999997654 27888999999999888
No 484
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.59 E-value=62 Score=37.09 Aligned_cols=276 Identities=15% Similarity=0.099 Sum_probs=133.1
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.....|.++.|.-.|. + -+|+.|| +..||..+++.+..... .-..+|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cE
Confidence 3566899999999997 3 3466555 56678777776543110 111344444444444 46
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-ecCC--CCCe
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH--EAPV 500 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-l~~h--~~~v 500 (1135)
.+|+.+| |.+.+..+.+..... . .-..+.|..+.=..+|. +-.|+..|..+. ....+..... .+-| ...|
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~-~-~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG-P-MLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEeccc-eEEEchhhccccccC-C-CCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccccc
Confidence 6777777 777776652211100 0 01123444444444443 444555553322 2232222222 2222 2334
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC--CCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.++.. +.+| -+-+++.+|.+++=+-+-..........+..+...+.+| .+..+--.. ..+.+.+-+..+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 44433 3333 355666666655433221111111111111111111122 111111111 12335555666777
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
.+++........|+.+++..++ .+-.|+...-+..|+..+ +.......+.. ..+|..+.-.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEe
Confidence 7776555554467777777744 555566554466677666 33333333222 24677777778887 67788877654
Q ss_pred E
Q 001157 658 I 658 (1135)
Q Consensus 658 i 658 (1135)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 3
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.52 E-value=33 Score=43.75 Aligned_cols=231 Identities=8% Similarity=0.088 Sum_probs=109.9
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
.....++|+|...++|.+. .|.|+++-...-+.......-. ..++.+.+-. ..........+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccceee
Confidence 4567899999999999999 8999999765443332222111 1233333333 22233344455566666543222111
Q ss_pred eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEE
Q 001157 919 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~ 998 (1135)
+...+++..--+--.+ .-+ ..+.+++||..-...... ......... ......-++.-.....-.+-...
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~ 183 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDL-KYAGTESSN----FVPYESLSPTLSIEGLVIDLDTV 183 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccc-eeccccccc----cceeeeeccceeeeccccccccc
Confidence 1222332222111123 334 778888888764332111 111111111 00000001100000000111111
Q ss_pred EEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 999 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
++.+.-. .....-+..++.+..+..+...+. +..-+.+.+|+.........+. +. ++ .+
T Consensus 184 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~----~~-------~~ 242 (993)
T KOG1983|consen 184 LISLPDA----YLGLSLIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYL-----PN----GQ-------LE 242 (993)
T ss_pred eeecccc----cccccccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcc-----cc----cc-------cC
Confidence 1111000 001112355666666655555444 3345777788776554443332 11 11 11
Q ss_pred CCCCCCEEEEEecCCcEEEEecCCCcc
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~~~~~ 1105 (1135)
++ ++..++++..||.+..||.+.++.
T Consensus 243 ~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cc-CCceEEEEEecCCEEeeecCCCce
Confidence 44 789999999999999999998764
No 486
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=45 Score=41.10 Aligned_cols=248 Identities=10% Similarity=0.008 Sum_probs=119.3
Q ss_pred EEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE
Q 001157 779 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 858 (1135)
Q Consensus 779 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~ 858 (1135)
++..-|..+.+|+.+|.+.+|.+........... .. ++ ......+ + ..+|..+...+.-.++.+-
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~--~~-------~~-~~~~~~~----~-kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL--VT-------ET-VKFEKEF----S-KKPINKLLVCASLELLLIL 85 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhh--hc-------ch-hHHhhhh----c-cchhHHHhhcchhcchhee
Confidence 3445577799999999999998765322111110 00 00 0000001 2 4567777777767777777
Q ss_pred eCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeC---CCC--cEEEEEe-CCc-cEEEEEcccceEeEeecCccCceEEEE
Q 001157 859 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP---QDN--NIIAIGM-EDS-SVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 859 sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp---~~~--~~lasg~-~dg-~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
+|+.|.++++.+.+.... ..+-..++..++.- ..+ .+.++.. ... ....|+-.++-.+..-.+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 788898888876655211 11111111111110 011 2222222 111 223344333333332222222233333
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcc-ccc
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS-RSW 1010 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~-~~~ 1010 (1135)
| .+..+.++-.+....+|.-.++..... ........ ..-..+.--+++..++.+.|+...+-|..|... +..
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~-~~s~~~~~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNL-FPSSMDNE----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccce-eeeccccc----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 344444444434445555444422111 22221111 122455556677778888888888888766652 211
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 1011 ~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
... +....++. -+.-++++-+ ++.|.||+..++..+..+
T Consensus 238 l~w---s~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 100 11112222 1344666554 669999999999877766
No 487
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=83.87 E-value=69 Score=34.72 Aligned_cols=239 Identities=13% Similarity=-0.016 Sum_probs=0.0
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
+.-+++.|+.|+.+|...+ +..........+-. ..+|+++.+.+..+.|++-+
T Consensus 9 ~~~~~~~lL~GTe~Gly~~-----------------------~~~~~~~~~~kl~~----~~~v~q~~v~~~~~lLi~Ls 61 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVL-----------------------NISDQPGTLEKLIG----RRSVTQIWVLEENNVLLMIS 61 (302)
T ss_pred cccCCcEEEEEeCCceEEE-----------------------EcccCCCCeEEecC----cCceEEEEEEhhhCEEEEEe
Q ss_pred CCe--EEEEeCCCceE----------------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec
Q 001157 860 GGK--VSLFNMMTFKV----------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 860 dg~--i~iwd~~~~~~----------------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
+.. ++.+++..... .. .-++.......++........+++....+|.++............
T Consensus 62 gk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~ 140 (302)
T smart00036 62 GKKPQLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLF 140 (302)
T ss_pred CCcceEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhh
Q ss_pred Cc--------cCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCC--cccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 922 GH--------QNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 922 ~h--------~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
.. ..++..+..+++ ...+..|+..+-..+.++.. ................ ....++..-+++ .+
T Consensus 141 k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~---~~p~~i~~l~~~-e~ 216 (302)
T smart00036 141 KSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETS---LKPISVVQVPRD-EF 216 (302)
T ss_pred cccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccc---cCceEEEEECCC-eE
Q ss_pred EEEECCcEEEEeccC-CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 990 LVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 990 ~~~~d~~i~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+.+.|....+-|..| ...+.....- .....++++. ..+|++-+.++ |.|+++.+++.+..+
T Consensus 217 Llc~~~~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 217 LLCYDEFGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred EEEECcEEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEcCCc-EEEEECCCCceEEEE
No 488
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.70 E-value=6.3 Score=40.21 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCccEEEEEcccceEeEe-------ec-------CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDEVKTK-------LK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~~~~~-------l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
.+.+|++.+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 677899999999999999999876542 22 3556788999998888777665 57788888764
No 489
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.77 E-value=71 Score=35.38 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=98.9
Q ss_pred CCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEc----CCCCe--EEEEc-CC---CcEEEEeCCCcccccce
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS----PTLNA--LVSSG-AD---AQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s----~d~~~--l~s~~-~D---~~i~iWd~~~~~~~~~~ 962 (1135)
...+|+....++-+.+||+... .++.+.. +++..+..- -+|+. |+.++ .+ .+|++|.+......- .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-T 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-E
T ss_pred ccceEEEEeCCCCEEEEcCCCc-EEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-e
Confidence 4456777778888999998754 4555531 233333221 13432 34443 32 469999886421100 0
Q ss_pred eeecCCCC-CCCCCCceeEEE--CC-CCcEEEE--EECCcEEEEec--cCC------cccccCCCCCCCCCeEEEEEccC
Q 001157 963 FIQAPAGR-QSPLVGETKVQF--HN-DQTHLLV--VHESQISVYDS--KLE------CSRSWSPKDALPAPISSAIYSCD 1028 (1135)
Q Consensus 963 ~~~~~~~~-~~~~~~v~~~~f--sp-dg~~l~~--~~d~~i~vwd~--~~~------~~~~~~~~~~h~~~i~~~~~s~d 1028 (1135)
.+...... ......+..+|+ ++ +|.+.+. ..+|.+..|.+ ... .++.+.. ...+..++....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecc
Confidence 11110000 011134566776 43 5665544 45788888887 221 2444433 457888888888
Q ss_pred CCEEEEEecCCcEEEEecCC-----CceeeccCCCcccCccccCCCCCCcEEEeeCCCC-CCEEEEEecCCcEEEEecCC
Q 001157 1029 GLLVYAGFCDGAIGVFDAET-----LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSE-PNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
..+|+.+=+|.-|.-|+++. ++.+...... + ......-+.+-..+++ +.+|||.-.+++..||+...
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-----~--l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-----G--LVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-----S--B-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccccc-----c--cccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 88999999998777777752 1222222111 0 0112233344333422 34566666778999999875
Q ss_pred C
Q 001157 1103 A 1103 (1135)
Q Consensus 1103 ~ 1103 (1135)
.
T Consensus 292 ~ 292 (381)
T PF02333_consen 292 P 292 (381)
T ss_dssp T
T ss_pred C
Confidence 4
No 490
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.38 E-value=4 Score=44.27 Aligned_cols=170 Identities=11% Similarity=0.105 Sum_probs=92.8
Q ss_pred EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-e-cCccC----ceE-EEEEcCCCCeEEEEcCC
Q 001157 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-L-KGHQN----RIT-GLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 873 ~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l-~~h~~----~i~-~l~~s~d~~~l~s~~~D 945 (1135)
.++.+......|..+-..| |++.|..-+. ..+.++++.+...-.+ + ....+ .|+ .+..-..|.-|..++.|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3344555667788899999 8888877665 6889998876543221 1 11111 122 12222345667888899
Q ss_pred CcEEEE-eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEE
Q 001157 946 AQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSA 1023 (1135)
Q Consensus 946 ~~i~iW-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~ 1023 (1135)
|.|.-| |+..+.......++ ..+....++..+.=-...+-++. ...|++.++..+......+... -..+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R---~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIR---NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeee---ccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCccee
Confidence 988777 55443322111111 11111122222221111222333 4567777766633332222222 2356678
Q ss_pred EEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 1024 IYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 1024 ~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++||.+.+|++-. .|.|+++.+++-.+
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCCCC
Confidence 9999999998754 67899998886543
No 491
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.21 E-value=5.9 Score=38.78 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.1
Q ss_pred CceEEEEEcCCC------CeEEEEcCCCcEEEEeCCC
Q 001157 925 NRITGLAFSPTL------NALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 925 ~~i~~l~~s~d~------~~l~s~~~D~~i~iWd~~~ 955 (1135)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368999999965 3688999999999998764
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.13 E-value=6.8 Score=27.25 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.3
Q ss_pred cCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEE
Q 001157 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1135)
Q Consensus 850 ~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 889 (1135)
|++++|.++. +++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788777776 689999999999888887753 33334444
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.01 E-value=21 Score=36.78 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=80.1
Q ss_pred EEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC----CceeEEee-cccCCceeEEEEeC
Q 001157 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 598 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~s~ 598 (1135)
.+||+.+.+.............+-++-+||+.+.+++. .++...+++++... ......-. -.....-.....-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 46888776554332223334455567899999988874 45667788888654 11111110 01111334466678
Q ss_pred CCCEEEEEecCC-eEEEEECCC-CeeeEEE---eC---CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheee
Q 001157 599 TRNRFLAAGDEF-QIKFWDMDN-MNMLTTV---DA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 599 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
||+.|+.||... +..+|.... ......+ .. .....--..+...|+|++++.+..+ -.|||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC-eEEee
Confidence 999999988654 345555422 1111111 10 1111122356778999999888765 346788776 44444
Q ss_pred cc
Q 001157 671 LE 672 (1135)
Q Consensus 671 ~~ 672 (1135)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 43
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.96 E-value=97 Score=35.06 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=42.2
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEE---------cccceEeEe---------ec--CccCceEEEEEcCCC---CeE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYN---------VRVDEVKTK---------LK--GHQNRITGLAFSPTL---NAL 939 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd---------~~~~~~~~~---------l~--~h~~~i~~l~~s~d~---~~l 939 (1135)
.|..+..++ .|..+|-.+.+|.+.++- +++|+..-. +. ...-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 456777888 788888888888665543 122321110 00 111134556777765 456
Q ss_pred EEEcCCCcEEEEeCCC
Q 001157 940 VSSGADAQLCMWSIDK 955 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~ 955 (1135)
..-+.|.+||+||+..
T Consensus 184 ~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSE 199 (741)
T ss_pred EEEecCcEEEEEecCC
Confidence 6666777777777765
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.18 E-value=33 Score=36.42 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceEEec----CCCCeEEE
Q 001157 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYD----APGNWCTM 546 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~----~~~~~v~~ 546 (1135)
..|++||..+.+...--.+-.+.|+++.|.... ++++.|. ....+..||+.+..-...-. .-.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 369999988877665555677889999997332 6677664 35568889887654322211 11357777
Q ss_pred EEEc-CCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 547 MAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 547 ~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+.+. .|+..+..++....+...|..||-.+...+.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 7763 3444454444334567778888865544433
No 496
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=80.74 E-value=1.6e+02 Score=36.81 Aligned_cols=79 Identities=19% Similarity=0.149 Sum_probs=56.0
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc----CCCc----ccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI----GPSA----YIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
.+.|.+++...-+.+|+....||+|.++|-.+.+.+... .... ....+.....-..+..++||| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 567889998888889999999999999999988776555 2211 111111122223556789999 6677888
Q ss_pred EecCCcEE
Q 001157 1089 GMSDGAVH 1096 (1135)
Q Consensus 1089 ~~~Dg~i~ 1096 (1135)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888865
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.43 E-value=15 Score=37.85 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=70.6
Q ss_pred eccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CC--eEEEEeCCC--ceEE-EEe---eCCCCCeeEEEE
Q 001157 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GG--KVSLFNMMT--FKVM-TMF---MSPPPAATFLAF 889 (1135)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg--~i~iwd~~~--~~~~-~~~---~~~~~~v~~l~~ 889 (1135)
+||+.+++........ .....+-++-+||++|.+|+ +| .+++++..+ ..+. ... ......--++..
T Consensus 50 ~yD~~tn~~rpl~v~t----d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQT----DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEecCCCcEEeccCCC----CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 4455555543332222 33444556789999999997 33 488888654 1111 110 011122234455
Q ss_pred eCCCCcEEEEEeCCc-cEEEEEccc--ceEeE--eecC-----ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcc
Q 001157 890 HPQDNNIIAIGMEDS-SVQIYNVRV--DEVKT--KLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 890 sp~~~~~lasg~~dg-~v~iwd~~~--~~~~~--~l~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
-| ||+.|+.|+.+. +..+|.-.. ..... -+.. ...----+...|||++++.+..+. .|||..+.+
T Consensus 126 L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 126 LP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 56 788888887774 344554321 11111 1110 011122466689999999988765 677888765
No 498
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=35 Score=43.52 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+...+.+..+.......+... .+.+..|+.........+..... ..++++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 344555555555555554432 34466666544433333333222 1278899999999999999999998
Q ss_pred Cee
Q 001157 620 MNM 622 (1135)
Q Consensus 620 ~~~ 622 (1135)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
No 499
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.62 E-value=1.7e+02 Score=36.42 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=66.7
Q ss_pred EEECCCCcEEEEEECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC-CceeeccCC
Q 001157 980 VQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET-LRFRCRIGP 1057 (1135)
Q Consensus 980 ~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~-~~~~~~~~~ 1057 (1135)
.+..|...++.++-...+++||+ +.+.++..... .-...|+++.+ .+..+++|...-+|.++..+. ++.+..+-.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELK-FIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhc-cCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 45567777888888889999999 55544443322 12556777765 566788887666666654432 223323321
Q ss_pred CcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1058 SAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. ..| ..|+++.+. |.+.+|.|..-|.+.+-++..
T Consensus 1016 D-~~p--------R~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 D-PVP--------RHVTALELL--DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred C-Ccc--------ceeeEEEEe--cCCceeeccccCcEEEEECCC
Confidence 1 122 345555554 456788888888888877753
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.56 E-value=1.4e+02 Score=35.56 Aligned_cols=242 Identities=12% Similarity=0.175 Sum_probs=129.4
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEeCC-CceEEEEeeC-CCCCeeEEEEeCCC--CcEEEEEeCCc-cEEEEEcccc----
Q 001157 845 CIALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQD--NNIIAIGMEDS-SVQIYNVRVD---- 914 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s-dg~i~iwd~~-~~~~~~~~~~-~~~~v~~l~~sp~~--~~~lasg~~dg-~v~iwd~~~~---- 914 (1135)
+..++|+...+-.|= ...|.-|=+. +-+++..+.- +...|+|+..-..+ ..+.++|-.++ .-++-.+.++
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 346778888777764 4445444443 4566665543 44567887765411 34555564444 3454444333
Q ss_pred -------e--EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 915 -------E--VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 915 -------~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
+ ....++ -.+.|.++.|.++++.++..-.+|.|.+||.+.+.......+..... ..+..-.|-++
T Consensus 112 ~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~-----~~v~ys~fv~~ 185 (670)
T PF10395_consen 112 EDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS-----INVSYSKFVND 185 (670)
T ss_pred cccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc-----cceehhhhhcc
Confidence 1 111222 25678899999999999999999999999994322111111111111 11111122222
Q ss_pred ------CcEEEE-EE-CC---cEEEEec--cCCcccccCCCCCCCCCeEEEEEcc-CCCEEEEEecCCcEEEEecCCCce
Q 001157 986 ------QTHLLV-VH-ES---QISVYDS--KLECSRSWSPKDALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 986 ------g~~l~~-~~-d~---~i~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~-dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
..++++ +. ++ ..+++.+ +...+........+........|+. +|.+.-- .++.|.+|++...+.
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQI 263 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceE
Confidence 234444 44 32 3666776 3333333321111122333344443 5554333 688999999999988
Q ss_pred eeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1052 RCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
...+..+..+.. ....++++.- |+..+.|+ +.++.|++.|+.-
T Consensus 264 ~~tI~l~~ii~~-----~~~~~vSl~~-~s~nRvLL--s~~nkIyLld~~~ 306 (670)
T PF10395_consen 264 QKTISLPSIIDK-----ESDDLVSLKP-PSPNRVLL--SVNNKIYLLDLKF 306 (670)
T ss_pred EEEEEechhhcc-----ccccceEeec-CCCCeEEE--EcCCEEEEEeehh
Confidence 888874433221 1134445432 32345555 3478999999964
Done!