Query 001157
Match_columns 1135
No_of_seqs 894 out of 4851
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.9E-69 1.3E-73 655.0 75.9 566 340-1099 9-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.6E-66 5.4E-71 632.0 72.3 575 345-1101 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 5.7E-65 1.9E-69 618.2 74.1 566 313-1047 19-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.2E-64 7.5E-69 613.2 74.6 555 310-1045 14-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 5.7E-64 2E-68 666.0 64.7 613 344-1101 613-1248(1249)
6 1pgu_A Actin interacting prote 100.0 4.2E-59 1.4E-63 572.1 68.4 556 345-1048 17-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-58 6.3E-63 613.1 67.7 571 403-1108 610-1213(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-57 9.1E-62 569.4 64.8 601 340-1058 11-793 (902)
9 1pgu_A Actin interacting prote 100.0 5.5E-57 1.9E-61 553.2 58.4 557 405-1102 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 3.6E-55 1.2E-59 550.1 57.3 585 404-1105 13-786 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 7.8E-48 2.7E-52 488.3 59.8 565 339-1104 5-603 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 5.1E-46 1.7E-50 471.7 52.5 466 404-1099 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 1.7E-44 6E-49 415.1 40.9 283 345-661 107-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1.3E-39 4.5E-44 360.5 41.4 293 337-661 22-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 3.5E-39 1.2E-43 361.2 44.9 292 338-660 46-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 3.7E-39 1.3E-43 362.6 43.0 295 338-660 55-354 (354)
17 3ow8_A WD repeat-containing pr 100.0 1E-38 3.4E-43 353.4 42.2 294 487-954 22-320 (321)
18 2ynn_A Coatomer subunit beta'; 100.0 1.1E-38 3.9E-43 350.8 40.7 292 338-663 4-302 (304)
19 1vyh_C Platelet-activating fac 100.0 8.1E-39 2.8E-43 367.9 40.4 286 404-801 104-409 (410)
20 3frx_A Guanine nucleotide-bind 100.0 2E-38 7E-43 351.3 41.2 301 337-664 7-318 (319)
21 3iz6_a 40S ribosomal protein R 100.0 3.9E-39 1.3E-43 366.8 36.3 305 334-664 53-376 (380)
22 1got_B GT-beta; complex (GTP-b 100.0 5.8E-38 2E-42 351.3 43.1 248 404-664 51-302 (340)
23 4gqb_B Methylosome protein 50; 100.0 3.3E-38 1.1E-42 351.5 39.4 297 345-664 29-332 (344)
24 4g56_B MGC81050 protein; prote 100.0 1.6E-38 5.6E-43 357.6 36.4 293 344-664 40-344 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.9E-38 2.7E-42 350.9 41.2 304 337-666 5-338 (345)
26 4g56_B MGC81050 protein; prote 100.0 1.6E-38 5.3E-43 357.8 33.5 319 736-1104 17-345 (357)
27 2ynn_A Coatomer subunit beta'; 100.0 3.1E-37 1.1E-41 339.4 41.6 254 404-671 9-266 (304)
28 1r5m_A SIR4-interacting protei 100.0 6.1E-37 2.1E-41 356.2 44.6 341 431-954 26-424 (425)
29 1r5m_A SIR4-interacting protei 100.0 3.1E-37 1.1E-41 358.6 42.0 306 340-665 39-363 (425)
30 4gqb_B Methylosome protein 50; 100.0 3.9E-38 1.3E-42 351.0 32.5 293 771-1103 29-332 (344)
31 2pbi_B Guanine nucleotide-bind 100.0 7E-37 2.4E-41 344.1 42.4 249 404-664 60-316 (354)
32 4ery_A WD repeat-containing pr 100.0 1.7E-36 5.7E-41 335.7 44.7 292 338-662 14-311 (312)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-37 7.8E-42 347.1 36.9 307 771-1109 14-342 (345)
34 2pm9_A Protein WEB1, protein t 100.0 1.7E-38 5.7E-43 368.3 28.1 295 346-664 12-338 (416)
35 1erj_A Transcriptional repress 100.0 9.3E-37 3.2E-41 349.0 41.7 309 338-663 56-389 (393)
36 3frx_A Guanine nucleotide-bind 100.0 2.6E-36 9E-41 334.3 42.6 247 404-664 13-268 (319)
37 3iz6_a 40S ribosomal protein R 100.0 1.6E-37 5.4E-42 353.6 33.4 295 404-803 62-375 (380)
38 1k32_A Tricorn protease; prote 100.0 6.9E-36 2.4E-40 385.7 52.7 555 345-1104 13-639 (1045)
39 2hes_X YDR267CP; beta-propelle 100.0 1.4E-36 4.9E-41 338.2 39.9 297 337-663 4-328 (330)
40 2xzm_R RACK1; ribosome, transl 100.0 2.8E-36 9.7E-41 338.3 42.0 300 338-664 12-341 (343)
41 4ery_A WD repeat-containing pr 100.0 1.1E-35 3.7E-40 329.2 43.8 257 403-671 18-275 (312)
42 2pm9_A Protein WEB1, protein t 100.0 7.2E-38 2.5E-42 362.9 27.3 337 408-956 12-415 (416)
43 4aow_A Guanine nucleotide-bind 100.0 1.2E-35 4.2E-40 333.6 43.3 306 334-665 25-339 (340)
44 1gxr_A ESG1, transducin-like e 100.0 5.4E-36 1.9E-40 336.0 39.6 286 345-664 8-297 (337)
45 1gxr_A ESG1, transducin-like e 100.0 3.7E-35 1.3E-39 329.2 45.3 319 312-661 9-335 (337)
46 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-36 3.8E-41 356.1 29.5 275 336-663 123-428 (524)
47 3vl1_A 26S proteasome regulato 100.0 7E-36 2.4E-40 346.6 35.6 345 409-955 57-419 (420)
48 3gre_A Serine/threonine-protei 100.0 1.5E-36 5.3E-41 353.9 29.8 357 405-952 60-437 (437)
49 3vl1_A 26S proteasome regulato 100.0 4.6E-36 1.6E-40 348.1 33.5 283 348-664 58-366 (420)
50 2xzm_R RACK1; ribosome, transl 100.0 7.2E-35 2.5E-39 326.8 41.8 205 446-663 14-244 (343)
51 2hes_X YDR267CP; beta-propelle 100.0 7.3E-35 2.5E-39 324.4 40.6 305 576-1048 3-328 (330)
52 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-36 3.7E-41 356.2 24.8 224 407-664 132-387 (524)
53 3dm0_A Maltose-binding peripla 100.0 1.2E-34 4.1E-39 358.2 41.9 298 339-662 374-692 (694)
54 1erj_A Transcriptional repress 100.0 2.1E-34 7.3E-39 329.4 40.9 251 406-673 62-350 (393)
55 3ei3_B DNA damage-binding prot 100.0 1.5E-34 5.1E-39 330.6 38.5 297 336-663 62-382 (383)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-33 3.9E-38 330.1 45.7 316 448-955 113-442 (445)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-33 6E-38 328.6 46.3 319 404-913 114-442 (445)
58 1k32_A Tricorn protease; prote 100.0 1.7E-33 5.7E-38 363.5 49.6 532 329-1050 35-639 (1045)
59 3gre_A Serine/threonine-protei 100.0 3.7E-34 1.3E-38 333.8 39.0 292 320-671 35-366 (437)
60 3v7d_B Cell division control p 100.0 2E-33 7E-38 330.3 45.1 320 404-911 117-461 (464)
61 4aow_A Guanine nucleotide-bind 100.0 3.1E-33 1.1E-37 314.0 44.4 294 444-915 29-339 (340)
62 3zwl_B Eukaryotic translation 100.0 1.9E-33 6.5E-38 319.7 42.5 288 341-664 27-347 (369)
63 1sq9_A Antiviral protein SKI8; 100.0 4.4E-34 1.5E-38 328.7 37.4 297 339-664 8-396 (397)
64 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-33 8.8E-38 310.5 40.6 288 337-664 8-297 (313)
65 3v7d_B Cell division control p 100.0 1.3E-32 4.3E-37 323.6 47.9 282 340-664 114-422 (464)
66 3ei3_B DNA damage-binding prot 100.0 1.3E-33 4.5E-38 322.7 37.5 315 571-1102 57-382 (383)
67 1k8k_C P40, ARP2/3 complex 41 100.0 7.8E-34 2.7E-38 323.4 35.4 294 345-670 7-368 (372)
68 3k26_A Polycomb protein EED; W 100.0 3.6E-34 1.2E-38 325.4 31.8 290 345-662 17-365 (366)
69 4e54_B DNA damage-binding prot 100.0 3.4E-34 1.1E-38 332.9 30.9 292 345-664 118-431 (435)
70 3i2n_A WD repeat-containing pr 100.0 1E-33 3.4E-38 320.4 33.6 287 345-664 17-354 (357)
71 4h5i_A Guanine nucleotide-exch 100.0 1.4E-33 4.7E-38 318.2 33.2 301 345-664 13-344 (365)
72 3zwl_B Eukaryotic translation 100.0 3E-32 1E-36 309.8 42.3 303 402-804 26-347 (369)
73 1sq9_A Antiviral protein SKI8; 100.0 6.5E-33 2.2E-37 318.9 37.0 299 489-957 8-397 (397)
74 3dwl_C Actin-related protein 2 100.0 2.5E-34 8.4E-39 328.1 22.9 286 345-661 10-377 (377)
75 4aez_A CDC20, WD repeat-contai 100.0 1.9E-32 6.6E-37 314.6 37.8 287 348-667 95-384 (401)
76 3dm0_A Maltose-binding peripla 100.0 1.9E-32 6.6E-37 338.5 40.6 256 403-672 377-640 (694)
77 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.9E-38 317.8 27.4 260 346-662 15-296 (588)
78 4a11_B DNA excision repair pro 100.0 3.3E-33 1.1E-37 322.7 31.3 349 567-1103 23-406 (408)
79 2pm7_B Protein transport prote 100.0 1.6E-32 5.4E-37 300.6 33.9 251 404-662 5-284 (297)
80 4e54_B DNA damage-binding prot 100.0 3.3E-33 1.1E-37 324.5 29.9 301 580-1051 112-433 (435)
81 4gga_A P55CDC, cell division c 100.0 6.3E-32 2.2E-36 312.3 40.2 282 348-664 107-396 (420)
82 3k26_A Polycomb protein EED; W 100.0 1.8E-32 6.2E-37 311.3 34.6 250 403-664 13-319 (366)
83 2j04_A TAU60, YPL007P, hypothe 100.0 9.1E-34 3.1E-38 319.4 22.1 223 406-664 13-255 (588)
84 4a11_B DNA excision repair pro 100.0 6.3E-32 2.1E-36 312.0 37.0 364 476-955 22-405 (408)
85 4h5i_A Guanine nucleotide-exch 100.0 3.7E-33 1.3E-37 314.7 25.8 292 773-1102 15-343 (365)
86 3odt_A Protein DOA1; ubiquitin 100.0 3.9E-31 1.3E-35 292.9 41.8 288 487-959 8-300 (313)
87 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-31 4.3E-36 305.1 38.5 247 404-663 4-274 (372)
88 2pm7_B Protein transport prote 100.0 6.2E-32 2.1E-36 295.9 34.4 246 345-618 8-284 (297)
89 3dw8_B Serine/threonine-protei 100.0 9E-32 3.1E-36 314.9 35.9 298 344-661 26-444 (447)
90 3i2n_A WD repeat-containing pr 100.0 2.8E-32 9.6E-37 308.5 30.5 299 536-957 13-355 (357)
91 4ggc_A P55CDC, cell division c 100.0 9.8E-31 3.4E-35 290.4 40.9 283 348-664 27-316 (318)
92 3dwl_C Actin-related protein 2 100.0 1.2E-32 4E-37 314.2 25.5 242 405-662 8-280 (377)
93 4aez_A CDC20, WD repeat-contai 100.0 4.9E-31 1.7E-35 302.9 35.0 293 763-1107 84-385 (401)
94 4gga_A P55CDC, cell division c 100.0 1.6E-30 5.3E-35 300.6 38.7 294 762-1104 95-397 (420)
95 3bg1_A Protein SEC13 homolog; 100.0 9.8E-32 3.4E-36 297.1 26.7 251 838-1102 12-293 (316)
96 1p22_A F-BOX/WD-repeat protein 100.0 6.9E-31 2.3E-35 305.3 35.0 272 345-664 132-415 (435)
97 2aq5_A Coronin-1A; WD40 repeat 100.0 2.7E-31 9.3E-36 305.4 31.1 296 348-664 36-343 (402)
98 3bg1_A Protein SEC13 homolog; 100.0 6E-32 2E-36 298.8 24.4 250 403-662 8-292 (316)
99 1yfq_A Cell cycle arrest prote 100.0 6.5E-31 2.2E-35 295.3 32.7 279 345-660 10-321 (342)
100 4ggc_A P55CDC, cell division c 100.0 6.8E-30 2.3E-34 283.6 39.6 294 763-1104 16-317 (318)
101 3dw8_B Serine/threonine-protei 100.0 2.9E-30 1E-34 302.0 37.0 249 406-664 26-374 (447)
102 3mmy_A MRNA export factor; mRN 100.0 1.7E-30 5.6E-35 295.3 32.8 294 333-662 25-345 (368)
103 3f3f_A Nucleoporin SEH1; struc 100.0 8.1E-30 2.8E-34 287.2 33.8 253 403-664 6-338 (351)
104 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-29 7.2E-34 292.8 36.7 233 406-664 131-366 (435)
105 3jrp_A Fusion protein of prote 100.0 1.1E-29 3.8E-34 289.8 31.5 254 403-664 6-288 (379)
106 3jrp_A Fusion protein of prote 100.0 1.5E-29 5.3E-34 288.6 32.5 257 339-623 3-291 (379)
107 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-29 6E-34 284.4 32.4 260 345-627 10-345 (351)
108 1yfq_A Cell cycle arrest prote 100.0 2.5E-29 8.5E-34 282.4 33.4 249 404-664 7-283 (342)
109 3mmy_A MRNA export factor; mRN 100.0 3.2E-29 1.1E-33 284.6 34.7 300 482-957 24-348 (368)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-29 4.7E-34 291.1 31.8 249 409-665 35-301 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-28 3.9E-33 287.9 36.1 299 347-663 5-391 (450)
112 2w18_A PALB2, fancn, partner a 100.0 5.7E-28 1.9E-32 255.3 36.5 293 456-953 42-355 (356)
113 1l0q_A Surface layer protein; 100.0 3.5E-27 1.2E-31 270.3 44.4 328 469-991 4-364 (391)
114 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-28 4.7E-33 276.5 31.6 282 339-664 11-337 (355)
115 1l0q_A Surface layer protein; 100.0 2E-27 6.8E-32 272.4 41.6 277 360-674 3-285 (391)
116 3bws_A Protein LP49; two-domai 100.0 2E-27 7E-32 276.4 40.9 336 410-913 62-432 (433)
117 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-28 1.9E-32 271.6 34.7 313 571-1050 3-338 (355)
118 3bws_A Protein LP49; two-domai 100.0 1.1E-27 3.9E-32 278.6 38.6 305 327-662 101-431 (433)
119 2xyi_A Probable histone-bindin 100.0 6E-28 2E-32 279.6 35.5 253 403-664 123-411 (430)
120 2xyi_A Probable histone-bindin 100.0 3.5E-28 1.2E-32 281.6 33.0 266 339-620 121-411 (430)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-27 1.4E-31 274.6 36.1 286 542-955 5-391 (450)
122 3lrv_A PRE-mRNA-splicing facto 100.0 5.7E-28 1.9E-32 270.8 27.3 280 460-955 43-333 (343)
123 3jro_A Fusion protein of prote 100.0 3.9E-28 1.4E-32 301.0 27.6 254 403-664 4-286 (753)
124 3jro_A Fusion protein of prote 100.0 6.8E-28 2.3E-32 298.9 28.8 252 838-1104 8-287 (753)
125 3lrv_A PRE-mRNA-splicing facto 100.0 9.1E-28 3.1E-32 269.1 26.3 267 353-662 43-332 (343)
126 4gq1_A NUP37; propeller, trans 100.0 1.1E-27 3.9E-32 273.2 27.2 304 346-661 15-387 (393)
127 2w18_A PALB2, fancn, partner a 100.0 1.3E-26 4.5E-31 244.9 31.0 297 337-661 25-355 (356)
128 4gq1_A NUP37; propeller, trans 100.0 1.6E-27 5.5E-32 272.0 23.7 298 781-1101 27-388 (393)
129 1nir_A Nitrite reductase; hemo 100.0 2.3E-25 7.8E-30 263.0 41.6 324 460-959 144-518 (543)
130 1nir_A Nitrite reductase; hemo 100.0 2.3E-25 7.8E-30 263.1 40.9 335 415-923 144-524 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-24 6.7E-29 247.7 30.0 284 347-664 63-388 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.2E-24 2.1E-28 243.5 31.6 306 453-937 62-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-23 6.2E-28 261.1 36.7 304 346-663 36-413 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.9E-23 9.8E-28 259.3 33.2 328 453-956 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-23 7.3E-28 259.8 28.3 288 348-664 18-394 (723)
136 3u4y_A Uncharacterized protein 99.9 1E-21 3.6E-26 218.9 36.9 281 352-664 3-305 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-22 3.9E-27 253.2 30.2 383 543-1053 18-448 (723)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-21 4.1E-26 243.1 35.3 237 411-662 28-341 (706)
139 2z3z_A Dipeptidyl aminopeptida 99.9 4.1E-22 1.4E-26 247.2 30.4 242 842-1104 122-437 (706)
140 3vgz_A Uncharacterized protein 99.9 5.7E-21 1.9E-25 215.1 37.0 277 342-654 36-335 (353)
141 1ri6_A Putative isomerase YBHE 99.9 5.3E-21 1.8E-25 214.3 29.4 241 840-1101 37-307 (343)
142 1ri6_A Putative isomerase YBHE 99.9 4.2E-20 1.4E-24 207.0 36.5 273 359-662 5-307 (343)
143 1pby_B Quinohemoprotein amine 99.9 5.6E-20 1.9E-24 205.4 34.8 301 512-924 2-321 (337)
144 2ojh_A Uncharacterized protein 99.9 6.5E-21 2.2E-25 208.5 26.4 257 364-654 17-293 (297)
145 3u4y_A Uncharacterized protein 99.9 8.8E-20 3E-24 203.2 35.9 199 459-664 3-208 (331)
146 1pby_B Quinohemoprotein amine 99.9 5.6E-20 1.9E-24 205.4 30.0 276 361-673 3-319 (337)
147 3hfq_A Uncharacterized protein 99.9 8.1E-20 2.8E-24 204.9 30.2 246 840-1104 39-321 (347)
148 3vgz_A Uncharacterized protein 99.9 2.5E-19 8.4E-24 201.7 33.8 273 314-610 42-335 (353)
149 2ojh_A Uncharacterized protein 99.9 7.1E-20 2.4E-24 200.1 28.0 256 324-610 19-293 (297)
150 3o4h_A Acylamino-acid-releasin 99.9 4.3E-20 1.5E-24 223.0 27.4 272 347-662 22-314 (582)
151 2oit_A Nucleoporin 214KDA; NH2 99.8 5.8E-19 2E-23 202.5 32.4 314 773-1102 37-405 (434)
152 3hfq_A Uncharacterized protein 99.8 1.1E-18 3.6E-23 195.8 33.8 274 324-623 15-323 (347)
153 1z68_A Fibroblast activation p 99.8 7.8E-20 2.7E-24 227.2 26.6 285 775-1104 62-445 (719)
154 1z68_A Fibroblast activation p 99.8 6E-20 2.1E-24 228.1 23.4 317 317-664 20-444 (719)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 5.4E-19 1.8E-23 202.8 29.4 259 347-617 37-331 (434)
156 3o4h_A Acylamino-acid-releasin 99.8 4.5E-19 1.6E-23 214.0 25.3 237 407-661 20-274 (582)
157 3pe7_A Oligogalacturonate lyas 99.8 3.1E-18 1E-22 195.5 30.8 299 335-661 18-380 (388)
158 4a5s_A Dipeptidyl peptidase 4 99.8 8.2E-18 2.8E-22 208.5 36.3 275 348-664 18-354 (740)
159 1jmx_B Amine dehydrogenase; ox 99.8 3.3E-18 1.1E-22 192.1 29.6 281 351-672 4-333 (349)
160 1jmx_B Amine dehydrogenase; ox 99.8 9.3E-19 3.2E-23 196.5 24.7 241 845-1109 4-332 (349)
161 4a5s_A Dipeptidyl peptidase 4 99.8 6.1E-18 2.1E-22 209.7 33.6 379 543-1055 18-456 (740)
162 3scy_A Hypothetical bacterial 99.8 4E-17 1.4E-21 184.0 36.9 302 551-957 11-341 (361)
163 3scy_A Hypothetical bacterial 99.8 1.1E-16 3.7E-21 180.4 36.5 272 361-662 15-336 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.8E-18 2.7E-22 189.8 26.7 251 840-1103 39-342 (365)
165 3pe7_A Oligogalacturonate lyas 99.8 1.9E-17 6.5E-22 188.9 27.3 254 404-664 26-330 (388)
166 2oiz_A Aromatic amine dehydrog 99.8 3.4E-16 1.1E-20 175.1 35.4 312 510-937 14-360 (361)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-16 4.8E-21 179.5 32.1 247 408-664 39-342 (365)
168 3c5m_A Oligogalacturonate lyas 99.8 1.3E-16 4.3E-21 182.7 27.8 282 349-661 38-380 (396)
169 2oiz_A Aromatic amine dehydrog 99.7 1.6E-15 5.6E-20 169.5 35.1 301 551-987 13-360 (361)
170 3c5m_A Oligogalacturonate lyas 99.7 2.2E-16 7.6E-21 180.6 22.8 317 526-1002 15-380 (396)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-13 5.6E-18 160.8 43.1 274 360-664 168-478 (567)
172 1qks_A Cytochrome CD1 nitrite 99.7 2.2E-13 7.7E-18 159.6 43.5 188 469-664 169-374 (567)
173 3azo_A Aminopeptidase; POP fam 99.7 6.9E-15 2.4E-19 180.6 31.5 251 403-661 18-321 (662)
174 1q7f_A NHL, brain tumor CG1071 99.7 9.9E-15 3.4E-19 158.2 29.1 242 840-1103 29-281 (286)
175 3fvz_A Peptidyl-glycine alpha- 99.7 6E-15 2.1E-19 163.2 26.2 251 840-1102 23-322 (329)
176 2gop_A Trilobed protease; beta 99.7 1.2E-14 4E-19 162.8 28.5 262 348-662 16-330 (347)
177 4a2l_A BT_4663, two-component 99.7 1.5E-10 5.2E-15 144.5 68.1 588 346-1102 42-659 (795)
178 4a2l_A BT_4663, two-component 99.7 1.2E-10 4E-15 145.5 66.5 535 346-1047 87-658 (795)
179 3fvz_A Peptidyl-glycine alpha- 99.7 2.1E-14 7.1E-19 158.8 28.5 245 347-619 24-322 (329)
180 3azo_A Aminopeptidase; POP fam 99.7 7.3E-15 2.5E-19 180.4 27.0 285 345-664 22-370 (662)
181 1q7f_A NHL, brain tumor CG1071 99.6 1.4E-13 4.6E-18 149.2 31.7 245 406-664 27-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 1.4E-13 4.7E-18 153.0 30.1 273 347-654 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-13 5.9E-18 168.9 33.9 249 406-665 122-416 (710)
184 2dg1_A DRP35, lactonase; beta 99.6 1.3E-13 4.3E-18 153.3 29.6 274 773-1093 6-301 (333)
185 3v9f_A Two-component system se 99.6 2.5E-09 8.5E-14 133.2 69.8 594 346-1102 18-656 (781)
186 2gop_A Trilobed protease; beta 99.6 1.5E-13 5.1E-18 153.7 27.5 220 842-1101 60-330 (347)
187 2xdw_A Prolyl endopeptidase; a 99.6 2.8E-13 9.5E-18 167.1 31.6 247 347-621 125-416 (710)
188 2bkl_A Prolyl endopeptidase; m 99.6 1.3E-13 4.4E-18 169.5 25.7 249 405-665 117-399 (695)
189 2z2n_A Virginiamycin B lyase; 99.6 1.2E-11 4E-16 134.8 38.1 281 345-664 13-296 (299)
190 3e5z_A Putative gluconolactona 99.6 1E-12 3.5E-17 143.0 28.7 241 345-622 26-289 (296)
191 3dsm_A Uncharacterized protein 99.6 9.9E-13 3.4E-17 145.0 28.5 278 367-672 15-309 (328)
192 3e5z_A Putative gluconolactona 99.6 9.7E-13 3.3E-17 143.2 27.9 238 404-664 23-287 (296)
193 3no2_A Uncharacterized protein 99.6 3.7E-13 1.3E-17 143.5 23.8 251 851-1119 4-269 (276)
194 1rwi_B Serine/threonine-protei 99.5 1.1E-12 3.8E-17 140.6 27.3 239 842-1104 25-266 (270)
195 3dsm_A Uncharacterized protein 99.5 9.2E-13 3.1E-17 145.2 26.8 241 841-1108 44-307 (328)
196 2z2n_A Virginiamycin B lyase; 99.5 2.3E-11 7.7E-16 132.6 37.5 280 771-1103 13-296 (299)
197 3v9f_A Two-component system se 99.5 3.7E-09 1.3E-13 131.6 61.9 541 347-1048 66-656 (781)
198 2bkl_A Prolyl endopeptidase; m 99.5 4.7E-13 1.6E-17 164.5 26.2 248 346-622 120-400 (695)
199 3no2_A Uncharacterized protein 99.5 2.1E-12 7.2E-17 137.7 27.4 243 361-639 7-272 (276)
200 2mad_H Methylamine dehydrogena 99.5 2.7E-11 9.2E-16 135.1 36.7 279 353-670 27-356 (373)
201 3sjl_D Methylamine dehydrogena 99.5 2.3E-12 7.9E-17 140.7 25.6 284 352-673 38-372 (386)
202 1rwi_B Serine/threonine-protei 99.5 3E-12 1E-16 137.2 26.4 240 348-621 25-266 (270)
203 3sjl_D Methylamine dehydrogena 99.5 7.5E-12 2.6E-16 136.7 28.8 288 328-643 60-384 (386)
204 1yr2_A Prolyl oligopeptidase; 99.5 2.1E-12 7.1E-17 159.9 27.2 247 406-664 160-442 (741)
205 2qc5_A Streptogramin B lactona 99.5 1.2E-10 4.2E-15 126.7 38.4 279 345-661 18-298 (300)
206 2mad_H Methylamine dehydrogena 99.5 1.3E-10 4.3E-15 129.6 35.8 273 328-626 48-357 (373)
207 1yr2_A Prolyl oligopeptidase; 99.4 1.5E-11 5E-16 152.3 29.0 244 348-621 164-443 (741)
208 2qc5_A Streptogramin B lactona 99.4 2.9E-10 1E-14 123.7 35.6 278 771-1101 18-299 (300)
209 3c75_H MADH, methylamine dehyd 99.4 4.1E-11 1.4E-15 133.6 26.0 279 356-671 82-409 (426)
210 3c75_H MADH, methylamine dehyd 99.4 4.8E-10 1.6E-14 125.1 32.9 295 509-920 82-409 (426)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.9E-10 6.6E-15 126.2 27.9 245 346-619 17-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.8E-10 6.2E-15 126.4 27.6 243 408-663 17-299 (314)
213 3hrp_A Uncharacterized protein 99.3 2.6E-10 8.8E-15 129.2 27.0 250 841-1100 131-408 (409)
214 3hrp_A Uncharacterized protein 99.3 7E-10 2.4E-14 125.6 30.0 240 347-617 131-408 (409)
215 1xip_A Nucleoporin NUP159; bet 99.3 7.3E-11 2.5E-15 129.6 20.6 175 840-1035 37-231 (388)
216 3g4e_A Regucalcin; six bladed 99.3 6.4E-10 2.2E-14 120.6 27.5 228 348-608 14-261 (297)
217 3iuj_A Prolyl endopeptidase; h 99.3 3.2E-10 1.1E-14 138.8 27.2 249 347-623 129-409 (693)
218 2qe8_A Uncharacterized protein 99.3 2.1E-10 7.3E-15 127.2 22.8 272 347-655 17-313 (343)
219 4a0p_A LRP6, LRP-6, low-densit 99.3 9.6E-06 3.3E-10 96.3 64.0 532 422-1055 8-556 (628)
220 3g4e_A Regucalcin; six bladed 99.3 2.4E-09 8.1E-14 116.0 29.0 227 410-653 14-262 (297)
221 2qe8_A Uncharacterized protein 99.3 1.8E-10 6.2E-15 127.8 20.3 270 773-1096 17-315 (343)
222 1yiq_A Quinohemoprotein alcoho 99.2 3.1E-09 1.1E-13 128.7 32.1 383 469-944 72-538 (689)
223 3s94_A LRP-6, low-density lipo 99.2 3.6E-06 1.2E-10 99.9 57.1 524 428-1050 16-553 (619)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 3.7E-09 1.3E-13 116.1 29.3 224 348-608 50-291 (326)
225 3iuj_A Prolyl endopeptidase; h 99.2 4.2E-10 1.4E-14 137.6 23.8 244 406-664 126-406 (693)
226 1xip_A Nucleoporin NUP159; bet 99.2 2.3E-10 7.8E-15 125.7 18.6 183 348-560 39-232 (388)
227 3dr2_A Exported gluconolactona 99.2 1.7E-09 5.9E-14 117.7 25.7 230 345-611 43-299 (305)
228 1kb0_A Quinohemoprotein alcoho 99.2 5.5E-09 1.9E-13 126.2 30.4 195 469-669 79-351 (677)
229 1yiq_A Quinohemoprotein alcoho 99.2 6.4E-09 2.2E-13 125.9 30.4 235 420-662 70-418 (689)
230 1kb0_A Quinohemoprotein alcoho 99.2 8.7E-09 3E-13 124.5 30.6 233 420-661 77-421 (677)
231 1mda_H Methylamine dehydrogena 99.2 1.6E-09 5.6E-14 118.9 21.4 279 328-642 47-366 (368)
232 2ghs_A AGR_C_1268P; regucalcin 99.1 1.5E-08 5.2E-13 111.2 29.2 222 411-653 51-292 (326)
233 1mda_H Methylamine dehydrogena 99.1 1.1E-09 3.8E-14 120.2 19.6 268 360-672 33-354 (368)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.4E-08 2.2E-12 108.9 34.8 148 469-628 55-216 (376)
235 3dr2_A Exported gluconolactona 99.1 1.3E-08 4.4E-13 110.8 26.9 232 407-656 43-300 (305)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.6E-07 5.5E-12 105.7 33.4 258 362-660 106-375 (376)
237 3hxj_A Pyrrolo-quinoline quino 99.1 6E-09 2E-13 115.1 20.8 301 458-955 24-324 (330)
238 2ece_A 462AA long hypothetical 99.1 4.2E-08 1.4E-12 107.4 26.4 238 782-1036 93-399 (462)
239 1fwx_A Nitrous oxide reductase 99.0 1.7E-08 5.7E-13 114.7 23.9 238 846-1104 90-433 (595)
240 1fwx_A Nitrous oxide reductase 99.0 2.9E-09 1E-13 120.8 17.4 273 551-957 99-433 (595)
241 3s94_A LRP-6, low-density lipo 99.0 4.4E-05 1.5E-09 90.6 54.1 207 345-580 38-247 (619)
242 2ece_A 462AA long hypothetical 99.0 7.4E-08 2.5E-12 105.4 26.5 237 355-607 90-399 (462)
243 2hz6_A Endoplasmic reticulum t 99.0 5.9E-10 2E-14 124.6 8.4 190 419-628 8-201 (369)
244 3hxj_A Pyrrolo-quinoline quino 99.0 5E-08 1.7E-12 107.6 23.6 265 347-663 60-324 (330)
245 3ei3_A DNA damage-binding prot 99.0 0.00049 1.7E-08 87.2 62.9 283 350-661 330-634 (1158)
246 2hz6_A Endoplasmic reticulum t 98.9 9.1E-10 3.1E-14 123.0 4.5 258 357-662 8-278 (369)
247 1kv9_A Type II quinohemoprotei 98.8 1.4E-06 4.8E-11 105.1 31.2 136 512-655 67-252 (668)
248 1npe_A Nidogen, entactin; glyc 98.8 1E-05 3.6E-10 85.6 34.5 224 409-645 36-263 (267)
249 4a0p_A LRP6, LRP-6, low-densit 98.8 0.00078 2.7E-08 79.9 63.1 520 367-1002 13-547 (628)
250 2iwa_A Glutamine cyclotransfer 98.7 2E-06 6.7E-11 88.8 23.5 208 335-576 7-237 (266)
251 2iwa_A Glutamine cyclotransfer 98.7 9.2E-07 3.1E-11 91.2 20.5 212 842-1104 22-239 (266)
252 2ad6_A Methanol dehydrogenase 98.7 4.3E-06 1.5E-10 98.6 29.1 110 512-629 63-195 (571)
253 1npe_A Nidogen, entactin; glyc 98.7 2.2E-05 7.4E-10 83.1 32.0 241 421-671 2-245 (267)
254 3nol_A Glutamine cyclotransfer 98.7 2.2E-06 7.4E-11 87.0 21.2 193 843-1089 45-243 (262)
255 1kv9_A Type II quinohemoprotei 98.6 5.2E-06 1.8E-10 100.1 28.1 269 361-650 119-519 (668)
256 2ad6_A Methanol dehydrogenase 98.6 3.8E-05 1.3E-09 90.5 34.1 191 469-665 64-337 (571)
257 2fp8_A Strictosidine synthase; 98.6 1E-05 3.5E-10 88.5 26.7 237 843-1104 21-315 (322)
258 1w6s_A Methanol dehydrogenase 98.6 2.1E-05 7.3E-10 92.3 30.6 195 469-665 64-344 (599)
259 3nok_A Glutaminyl cyclase; bet 98.6 1.8E-06 6.1E-11 87.5 18.0 194 842-1090 56-254 (268)
260 1flg_A Protein (quinoprotein e 98.6 7.2E-05 2.5E-09 88.1 34.9 205 420-629 68-365 (582)
261 1flg_A Protein (quinoprotein e 98.6 5.5E-05 1.9E-09 89.1 33.8 196 470-670 71-361 (582)
262 3ott_A Two-component system se 98.6 0.0049 1.7E-07 76.0 61.9 529 346-1047 62-625 (758)
263 3nol_A Glutamine cyclotransfer 98.6 6E-06 2.1E-10 83.8 21.7 182 456-652 45-244 (262)
264 1w6s_A Methanol dehydrogenase 98.6 2.6E-05 9E-10 91.6 29.8 274 351-647 110-530 (599)
265 2xe4_A Oligopeptidase B; hydro 98.5 8.4E-06 2.9E-10 100.1 26.6 248 348-622 175-461 (751)
266 3mbr_X Glutamine cyclotransfer 98.5 1.5E-05 5.2E-10 80.2 22.9 198 840-1090 20-223 (243)
267 2fp8_A Strictosidine synthase; 98.5 2.3E-05 7.8E-10 85.6 26.2 252 774-1048 20-313 (322)
268 3ott_A Two-component system se 98.5 0.0078 2.7E-07 74.1 72.7 572 346-1102 21-626 (758)
269 3nok_A Glutaminyl cyclase; bet 98.5 1.4E-05 4.9E-10 80.9 21.3 183 456-652 57-254 (268)
270 2p4o_A Hypothetical protein; p 98.5 5.5E-05 1.9E-09 81.7 27.8 228 409-653 32-278 (306)
271 2p4o_A Hypothetical protein; p 98.5 8.4E-05 2.9E-09 80.3 28.6 239 335-609 20-278 (306)
272 3mbr_X Glutamine cyclotransfer 98.4 4.7E-05 1.6E-09 76.6 23.7 184 455-652 22-223 (243)
273 3ei3_A DNA damage-binding prot 98.4 0.014 4.7E-07 74.0 67.8 643 338-1102 366-1062(1158)
274 1k3i_A Galactose oxidase precu 98.4 2E-05 6.9E-10 95.4 24.8 280 350-652 189-530 (656)
275 3v64_C Agrin; beta propeller, 98.3 0.0012 4.2E-08 72.3 34.6 248 347-627 34-283 (349)
276 3v65_B Low-density lipoprotein 98.3 0.00084 2.9E-08 74.8 32.9 248 348-628 78-327 (386)
277 1ijq_A LDL receptor, low-densi 98.3 0.0015 5.3E-08 70.5 33.9 231 423-664 4-239 (316)
278 1k3i_A Galactose oxidase precu 98.3 0.00018 6.3E-09 86.9 28.7 118 546-664 190-324 (656)
279 1ijq_A LDL receptor, low-densi 98.3 0.00058 2E-08 73.8 29.8 207 840-1055 29-245 (316)
280 3v64_C Agrin; beta propeller, 98.3 0.0012 4.2E-08 72.3 32.6 242 409-664 34-276 (349)
281 3qqz_A Putative uncharacterize 98.2 0.00063 2.2E-08 69.6 27.4 201 346-574 26-251 (255)
282 2xbg_A YCF48-like protein; pho 98.2 0.0025 8.6E-08 69.2 33.9 279 346-660 35-319 (327)
283 3v65_B Low-density lipoprotein 98.2 0.0013 4.3E-08 73.4 32.1 240 411-664 79-319 (386)
284 3qqz_A Putative uncharacterize 98.2 0.00016 5.5E-09 74.0 22.5 204 840-1047 26-252 (255)
285 2xbg_A YCF48-like protein; pho 98.2 0.0035 1.2E-07 68.0 34.9 193 841-1046 122-320 (327)
286 3tc9_A Hypothetical hydrolase; 98.2 0.00021 7.4E-09 80.8 25.1 248 842-1101 138-429 (430)
287 4hw6_A Hypothetical protein, I 98.2 0.00042 1.4E-08 78.3 27.1 250 842-1101 140-432 (433)
288 3p5b_L Low density lipoprotein 98.2 0.0031 1.1E-07 70.5 33.9 232 422-664 85-321 (400)
289 2xe4_A Oligopeptidase B; hydro 98.1 0.00021 7E-09 87.7 25.5 200 406-617 170-398 (751)
290 3p5b_L Low density lipoprotein 98.1 0.0014 4.7E-08 73.4 29.5 208 840-1056 111-328 (400)
291 3tc9_A Hypothetical hydrolase; 98.0 0.00083 2.8E-08 76.0 25.1 240 410-662 138-429 (430)
292 3kya_A Putative phosphatase; s 98.0 0.003 1E-07 71.3 27.9 254 842-1104 140-477 (496)
293 4hw6_A Hypothetical protein, I 97.9 0.0022 7.4E-08 72.5 26.9 241 409-662 139-432 (433)
294 3sov_A LRP-6, low-density lipo 97.9 0.022 7.4E-07 61.2 32.4 209 410-627 36-246 (318)
295 1n7d_A LDL receptor, low-densi 97.9 9.1E-05 3.1E-09 89.4 15.1 207 841-1056 406-622 (699)
296 3sov_A LRP-6, low-density lipo 97.9 0.0085 2.9E-07 64.4 28.9 209 348-585 36-247 (318)
297 3m0c_C LDL receptor, low-densi 97.9 0.014 4.7E-07 70.8 33.5 232 422-664 397-633 (791)
298 3m0c_C LDL receptor, low-densi 97.8 0.029 9.8E-07 68.0 34.4 213 408-627 423-640 (791)
299 2xzh_A Clathrin heavy chain 1; 97.8 0.054 1.9E-06 56.1 31.5 258 566-957 48-334 (365)
300 3kya_A Putative phosphatase; s 97.7 0.008 2.7E-07 67.8 26.8 245 410-664 140-476 (496)
301 2xzh_A Clathrin heavy chain 1; 97.7 0.061 2.1E-06 55.7 30.3 234 844-1104 70-334 (365)
302 1bpo_A Protein (clathrin); cla 97.7 0.091 3.1E-06 56.7 33.5 260 565-957 46-333 (494)
303 1n7d_A LDL receptor, low-densi 97.7 0.00028 9.7E-09 85.1 14.9 228 855-1104 380-616 (699)
304 3amr_A 3-phytase; beta-propell 97.7 0.0089 3E-07 63.4 24.0 194 469-671 42-271 (355)
305 2p9w_A MAL S 1 allergenic prot 97.7 0.0075 2.6E-07 63.4 23.2 202 842-1048 14-265 (334)
306 2xtc_A F-box-like/WD repeat-co 97.6 4.1E-05 1.4E-09 61.4 4.3 36 1-36 1-36 (90)
307 3amr_A 3-phytase; beta-propell 97.6 0.021 7.2E-07 60.6 25.2 196 361-584 42-272 (355)
308 3a9g_A Putative uncharacterize 97.6 0.036 1.2E-06 60.5 28.3 231 841-1090 29-330 (354)
309 2ism_A Putative oxidoreductase 97.5 0.033 1.1E-06 60.9 26.3 231 842-1090 32-333 (352)
310 2nxp_A Transcription initiatio 97.4 0.00028 9.5E-09 65.6 7.9 79 71-149 51-136 (156)
311 2j4b_A TAF5, transcription ini 97.4 0.00014 4.9E-09 65.7 5.3 96 67-180 29-131 (138)
312 2p9w_A MAL S 1 allergenic prot 97.2 0.0062 2.1E-07 64.0 15.4 167 880-1048 11-215 (334)
313 2j49_A Transcription initiatio 97.1 0.00034 1.2E-08 63.9 4.0 100 67-181 31-137 (148)
314 2ism_A Putative oxidoreductase 97.1 0.049 1.7E-06 59.4 22.1 229 410-651 32-333 (352)
315 3sre_A PON1, serum paraoxonase 97.0 0.5 1.7E-05 50.8 30.3 208 409-627 50-308 (355)
316 2g8s_A Glucose/sorbosone dehyd 97.0 0.087 3E-06 57.5 23.6 239 842-1100 19-350 (353)
317 3pbp_A Nucleoporin NUP82; beta 97.0 0.039 1.3E-06 59.6 19.4 108 846-955 26-158 (452)
318 2vpj_A Kelch-like protein 12; 97.0 0.058 2E-06 57.5 21.4 192 419-621 62-280 (301)
319 1cru_A Protein (soluble quinop 96.9 0.22 7.6E-06 56.1 26.8 103 842-944 28-163 (454)
320 2vpj_A Kelch-like protein 12; 96.8 0.067 2.3E-06 57.0 20.7 232 419-664 14-279 (301)
321 3a9g_A Putative uncharacterize 96.8 0.53 1.8E-05 51.1 27.9 234 346-607 28-330 (354)
322 2g8s_A Glucose/sorbosone dehyd 96.8 0.39 1.3E-05 52.2 26.7 236 410-650 19-340 (353)
323 3ii7_A Kelch-like protein 7; p 96.8 0.1 3.5E-06 55.7 21.8 230 421-664 13-273 (306)
324 1bpo_A Protein (clathrin); cla 96.8 0.79 2.7E-05 49.6 34.6 260 369-664 48-332 (494)
325 2xn4_A Kelch-like protein 2; s 96.8 0.11 3.7E-06 55.3 21.9 232 419-664 15-277 (302)
326 3ii7_A Kelch-like protein 7; p 96.8 0.23 7.8E-06 52.9 24.2 231 360-622 13-275 (306)
327 3das_A Putative oxidoreductase 96.8 0.44 1.5E-05 51.0 25.7 229 841-1088 32-324 (347)
328 1xi4_A Clathrin heavy chain; a 96.6 0.13 4.5E-06 64.1 22.5 238 845-1104 70-333 (1630)
329 3sbq_A Nitrous-oxide reductase 96.6 1 3.5E-05 50.3 26.7 97 844-943 326-453 (638)
330 2xn4_A Kelch-like protein 2; s 96.4 0.18 6.1E-06 53.6 20.0 191 419-621 61-278 (302)
331 4asc_A Kelch repeat and BTB do 96.3 0.67 2.3E-05 49.4 24.0 180 860-1052 12-225 (315)
332 3das_A Putative oxidoreductase 96.2 1.1 3.9E-05 47.9 24.9 215 880-1102 30-292 (347)
333 1zgk_A Kelch-like ECH-associat 96.2 0.5 1.7E-05 50.3 22.7 233 848-1108 21-291 (308)
334 4asc_A Kelch repeat and BTB do 96.2 0.28 9.5E-06 52.5 20.6 229 423-664 8-278 (315)
335 3sre_A PON1, serum paraoxonase 96.2 1.8 6E-05 46.6 26.8 194 347-560 50-285 (355)
336 1xi4_A Clathrin heavy chain; a 96.1 0.51 1.7E-05 59.1 23.5 97 566-672 47-143 (1630)
337 1zgk_A Kelch-like ECH-associat 96.1 0.31 1.1E-05 51.9 19.9 233 418-664 23-288 (308)
338 3sbq_A Nitrous-oxide reductase 95.9 2.9 0.0001 46.8 27.0 198 850-1049 140-409 (638)
339 2woz_A Kelch repeat and BTB do 95.9 0.75 2.6E-05 49.1 22.2 223 431-664 25-288 (318)
340 3pbp_A Nucleoporin NUP82; beta 95.9 0.13 4.6E-06 55.5 15.1 125 348-482 67-208 (452)
341 1uuj_A Platelet-activating fac 95.6 0.012 4E-07 47.0 4.4 54 5-58 10-65 (88)
342 2woz_A Kelch repeat and BTB do 95.6 0.91 3.1E-05 48.5 21.3 197 415-623 52-291 (318)
343 1tl2_A L10, protein (tachylect 95.5 0.14 4.9E-06 49.8 12.3 147 842-1002 42-206 (236)
344 2uvk_A YJHT; unknown function, 95.4 0.88 3E-05 49.6 20.5 93 851-945 19-128 (357)
345 2uvk_A YJHT; unknown function, 95.3 0.51 1.7E-05 51.5 18.2 235 419-664 19-343 (357)
346 3s25_A Hypothetical 7-bladed b 95.3 0.97 3.3E-05 47.6 19.3 173 848-1050 21-218 (302)
347 1tl2_A L10, protein (tachylect 95.1 0.14 4.8E-06 49.9 10.8 147 882-1042 41-204 (236)
348 1cru_A Protein (soluble quinop 95.0 0.58 2E-05 52.7 17.8 108 882-992 27-161 (454)
349 2be1_A Serine/threonine-protei 94.6 1 3.4E-05 48.0 17.2 114 421-540 11-140 (339)
350 2be1_A Serine/threonine-protei 93.7 0.41 1.4E-05 51.0 12.0 201 895-1107 11-236 (339)
351 2zwa_A Leucine carboxyl methyl 93.4 3.1 0.00011 49.9 20.6 197 850-1052 396-639 (695)
352 3qhy_B Beta-lactamase inhibito 93.4 3.7 0.00013 42.6 18.7 223 841-1103 24-247 (282)
353 2wg3_C Hedgehog-interacting pr 93.4 12 0.00042 41.8 25.0 109 410-520 15-159 (463)
354 3s25_A Hypothetical 7-bladed b 92.8 11 0.00037 39.5 27.0 179 351-576 57-255 (302)
355 3qhy_B Beta-lactamase inhibito 91.5 14 0.00048 38.1 20.9 223 348-620 25-247 (282)
356 3kci_A Probable E3 ubiquitin-p 91.3 19 0.00066 39.3 23.3 205 883-1102 106-345 (389)
357 2zwa_A Leucine carboxyl methyl 90.0 11 0.00038 45.0 20.1 197 463-664 396-636 (695)
358 4hvt_A Ritya.17583.B, post-pro 89.6 39 0.0013 40.1 27.3 248 350-618 132-429 (711)
359 2wg3_C Hedgehog-interacting pr 87.3 41 0.0014 37.5 28.9 29 590-618 15-44 (463)
360 3b7f_A Glycosyl hydrolase, BNR 87.1 38 0.0013 36.9 26.4 260 840-1108 54-376 (394)
361 4gq2_M Nucleoporin NUP120; bet 86.5 54 0.0019 40.6 23.4 40 1018-1057 236-275 (950)
362 3q6k_A 43.2 kDa salivary prote 86.2 40 0.0014 36.2 21.0 167 478-648 124-339 (381)
363 3kci_A Probable E3 ubiquitin-p 84.4 51 0.0017 35.8 21.8 205 883-1101 54-292 (389)
364 4hvt_A Ritya.17583.B, post-pro 83.4 41 0.0014 40.0 19.4 242 413-662 133-429 (711)
365 3uc1_A DNA gyrase subunit A; D 81.3 57 0.002 34.3 25.7 113 840-955 94-228 (327)
366 3q6k_A 43.2 kDa salivary prote 80.6 66 0.0023 34.5 20.9 169 862-1035 124-341 (381)
367 3no0_A DNA gyrase subunit A; D 80.0 56 0.0019 33.4 23.0 205 883-1101 25-245 (276)
368 3no0_A DNA gyrase subunit A; D 76.1 72 0.0025 32.5 21.6 113 840-956 67-197 (276)
369 3b7f_A Glycosyl hydrolase, BNR 72.5 1.1E+02 0.0038 33.0 30.3 238 408-657 54-366 (394)
370 4gq2_M Nucleoporin NUP120; bet 60.7 71 0.0024 39.5 14.4 37 926-962 237-273 (950)
371 1zi0_A DNA gyrase subunit A; b 59.9 1.6E+02 0.0056 30.4 28.8 239 851-1102 2-277 (307)
372 3l6v_A GYRA, DNA gyrase subuni 56.1 2.1E+02 0.0073 30.5 29.4 241 850-1100 5-314 (370)
373 4fhn_B Nucleoporin NUP120; pro 50.3 4.6 0.00016 51.5 1.3 41 1018-1058 238-278 (1139)
374 2wpv_A GET4, UPF0363 protein Y 46.4 78 0.0027 32.8 9.5 112 38-188 17-129 (312)
375 2d68_A FOP, FGFR1OP; alpha hel 45.3 18 0.00062 28.6 3.4 29 7-35 20-48 (82)
376 4gco_A Protein STI-1; structur 44.7 77 0.0026 27.4 8.3 99 14-119 22-125 (126)
377 1wp5_A Topoisomerase IV; broke 42.9 3.1E+02 0.011 28.5 26.1 240 850-1101 3-276 (323)
378 3uc1_A DNA gyrase subunit A; D 42.5 3.2E+02 0.011 28.5 24.6 207 883-1101 43-278 (327)
379 3zwu_A Alkaline phosphatase PH 41.0 88 0.003 35.9 9.8 64 543-606 477-548 (592)
380 3f7f_A Nucleoporin NUP120; nuc 40.3 1.1E+02 0.0037 35.8 10.4 78 1019-1104 223-307 (729)
381 2lni_A Stress-induced-phosphop 39.5 1.6E+02 0.0055 24.7 9.8 90 7-102 18-112 (133)
382 1wp5_A Topoisomerase IV; broke 39.1 3.5E+02 0.012 28.1 26.1 206 840-1048 38-277 (323)
383 1suu_A DNA gyrase subunit A; t 38.6 3.5E+02 0.012 27.9 28.5 194 850-1051 6-234 (312)
384 1sqj_A OXG-RCBH, oligoxylogluc 38.0 5.9E+02 0.02 30.4 27.0 158 346-520 14-190 (789)
385 4ga2_A E3 SUMO-protein ligase 37.6 2.2E+02 0.0074 25.2 10.5 94 21-121 13-111 (150)
386 3lpz_A GET4 (YOR164C homolog); 37.5 1.2E+02 0.0041 31.7 9.2 112 38-188 16-131 (336)
387 3f7f_A Nucleoporin NUP120; nuc 37.2 89 0.0031 36.5 9.0 37 883-922 223-259 (729)
388 4a9v_A PHOX; hydrolase, beta-p 34.9 1.6E+02 0.0055 33.4 10.3 65 542-606 476-548 (592)
389 1zi0_A DNA gyrase subunit A; b 33.6 4.1E+02 0.014 27.3 27.8 192 418-618 1-225 (307)
390 3zwu_A Alkaline phosphatase PH 33.1 80 0.0027 36.3 7.8 59 927-992 478-548 (592)
391 2k9m_A RNA polymerase sigma fa 32.6 56 0.0019 28.7 5.0 89 3-103 19-121 (130)
392 3mkr_A Coatomer subunit epsilo 31.4 2.8E+02 0.0096 28.1 11.4 86 5-101 64-157 (291)
393 4d9s_A UVB-resistance protein 31.3 5.2E+02 0.018 27.7 31.7 204 883-1101 122-356 (406)
394 3qou_A Protein YBBN; thioredox 28.8 2.1E+02 0.007 29.1 9.8 104 11-121 123-231 (287)
395 3mkr_A Coatomer subunit epsilo 28.7 1.8E+02 0.0061 29.7 9.3 105 7-119 102-210 (291)
396 2zux_A YESW protein; beta-prop 27.9 7E+02 0.024 28.1 26.0 185 456-662 328-531 (591)
397 4asv_A Small glutamine-rich te 27.5 34 0.0011 27.5 2.3 19 1-19 15-33 (92)
398 2zux_A YESW protein; beta-prop 27.0 7.2E+02 0.025 28.0 26.3 52 577-629 352-410 (591)
399 4a9v_A PHOX; hydrolase, beta-p 27.0 2.2E+02 0.0074 32.4 9.6 59 841-900 476-548 (592)
400 1xks_A Nuclear pore complex pr 26.5 6.6E+02 0.023 27.4 16.4 67 735-801 47-125 (450)
401 1elw_A TPR1-domain of HOP; HOP 26.4 2.5E+02 0.0087 22.5 10.0 89 8-102 7-100 (118)
402 3mez_A Mannose-specific lectin 25.3 2.8E+02 0.0094 23.3 8.1 55 928-1002 22-76 (111)
403 1suu_A DNA gyrase subunit A; t 25.2 5.7E+02 0.02 26.2 29.1 157 840-1002 46-229 (312)
404 1kdl_A YOPD protein; yersinia, 23.4 45 0.0016 19.2 1.7 13 6-18 5-17 (26)
405 4g26_A Pentatricopeptide repea 23.2 3E+02 0.01 30.8 10.4 74 21-99 121-200 (501)
406 3bu8_A Telomeric repeat-bindin 23.1 4.1E+02 0.014 25.5 9.0 104 67-189 107-210 (235)
407 3mvd_K Regulator of chromosome 22.8 7.3E+02 0.025 26.6 27.1 205 882-1102 127-374 (423)
408 4fhn_B Nucleoporin NUP120; pro 22.8 67 0.0023 40.8 5.3 38 455-494 239-276 (1139)
409 4gcn_A Protein STI-1; structur 22.7 2.7E+02 0.0091 23.7 8.0 101 14-116 17-123 (127)
410 1oyi_A Double-stranded RNA-bin 22.6 53 0.0018 26.1 2.7 30 6-37 16-45 (82)
411 1vk8_A Hypothetical protein TM 22.5 12 0.00042 31.4 -1.0 35 25-60 38-72 (106)
412 2pl2_A Hypothetical conserved 21.3 3.9E+02 0.013 25.3 9.8 109 8-120 8-129 (217)
413 3upv_A Heat shock protein STI1 21.3 2.9E+02 0.0099 23.0 8.0 87 9-101 8-99 (126)
414 3sz7_A HSC70 cochaperone (SGT) 20.9 2.7E+02 0.0091 24.9 8.0 87 9-101 15-106 (164)
415 2vgx_A Chaperone SYCD; alterna 20.2 4.4E+02 0.015 23.0 9.2 84 11-100 27-115 (148)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-69 Score=655.01 Aligned_cols=566 Identities=21% Similarity=0.364 Sum_probs=488.1
Q ss_pred EEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
.+.|+ |.+.|++++|||||+ +||+|+.|++|+|||. +++.+.. +.+|.+.|.+++|+|
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp 67 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP 67 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence 44566 999999999999998 7899999999999995 5555442 678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
||++||+++.|++|+|||+. ++.+. .+.+|...|.+++|+||++ +|++++.|+.+++|+.. ......+.+|..
T Consensus 68 dg~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~ 140 (577)
T 2ymu_A 68 DGQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS 140 (577)
T ss_dssp TSSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred CCCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence 99999999999999999965 44443 7889999999999999999 89999999999999965 455667788999
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|..+.++|+. ..+++++.++.+++|+.. .........+...+.+++++|+++++++++. ++.|++||. +++
T Consensus 141 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~ 212 (577)
T 2ymu_A 141 SVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ 212 (577)
T ss_dssp CEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred ceeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence 99999998865 789999999999999864 4455566778889999999999999999874 788999995 578
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 658 (1135)
.+..+.+|.. .|.+++|+|++++|++++.|+.|++||.. ++.+..+..+. ..|.+++|+|+++.+++++.|+.|++
T Consensus 213 ~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 213 LLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp EEEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 8888998877 89999999999999999999999999964 56777777654 47999999999999999999999999
Q ss_pred EECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcc
Q 001157 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (1135)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1135)
|+.... ..+.+.
T Consensus 289 w~~~~~--~~~~~~------------------------------------------------------------------ 300 (577)
T 2ymu_A 289 WNRNGQ--LLQTLT------------------------------------------------------------------ 300 (577)
T ss_dssp EETTSC--EEEEEC------------------------------------------------------------------
T ss_pred EeCCCc--EEEEEe------------------------------------------------------------------
Confidence 996432 222222
Q ss_pred ccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccc
Q 001157 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1135)
Q Consensus 739 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 818 (1135)
+|...|.+++|+|+++.+++++.|+.+++|+....
T Consensus 301 -------------------------------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------- 335 (577)
T 2ymu_A 301 -------------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------- 335 (577)
T ss_dssp -------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------
T ss_pred -------------------------------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------
Confidence 15667899999999999999999999999985321
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEE
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 897 (1135)
... .+.+ | ...+.+++|+|+|++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 336 --------~~~--~~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l 400 (577)
T 2ymu_A 336 --------HLQ--TLTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTI 400 (577)
T ss_dssp --------EEE--EECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred --------eeE--EEeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEE
Confidence 111 1222 6 88999999999999999998 899999995 5788899999999999999999 89999
Q ss_pred EEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCc
Q 001157 898 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 977 (1135)
Q Consensus 898 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v 977 (1135)
++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..|
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v 470 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSV 470 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCE
Confidence 99999999999995 6788899999999999999999999999999999999999754 3 233444555 689
Q ss_pred eeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 978 TKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 978 ~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
.+++|+||+++|++ +.|+.|++||.+++.+..+ .+|...|++++|+|||++||+++.||.|++||. +++.+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE---eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 99999999999999 5689999999987777665 356899999999999999999999999999996 577766553
Q ss_pred CCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEe
Q 001157 1057 PSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~ 1099 (1135)
+|...|.+++|+| |+++|++++.|++|++||
T Consensus 547 -----------~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 -----------GHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -----------CCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred -----------CCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 8889999999999 889999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-66 Score=631.95 Aligned_cols=575 Identities=13% Similarity=0.143 Sum_probs=461.4
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.+.+++|||||+ +||+++ ++.|+||++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467899999999998 677776 67999999987765542 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCeeEEEecCCCCCe
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ +|++++.+ +.|++|| .++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997654432 236778999999999999999 78887765 3677776 677778899999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++. ..|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999998752 36999999999999999888888889999999999999999999999985 788999999999998
Q ss_pred EEee-------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC-CCcCeEEEecCCCEEEEEeC
Q 001157 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 581 ~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 652 (1135)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5665 8999999999999999999999999999999999888754221 12334444 7889999999
Q ss_pred CCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcc
Q 001157 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1135)
Q Consensus 653 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1135)
|+.+++|+..++ .....+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998766 2222222
Q ss_pred cccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcc
Q 001157 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1135)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 812 (1135)
+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 322 -------------------------------------gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp -------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred -------------------------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 2667899999999999999999999999998643
Q ss_pred cccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEE---eeCCCCCeeEEE
Q 001157 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFLA 888 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~---~~~~~~~v~~l~ 888 (1135)
+........ .| ...|.+++|++++. +++++ |+++++|++.++..... .........+++
T Consensus 356 -------------~~~~~~~~~--~h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPD--VH-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSC--SC-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------Cceeeeccc--CC-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 222221112 27 88999999998775 55555 99999999876532110 001234567899
Q ss_pred EeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 889 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
|+| ++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-E
T ss_pred EeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-c
Confidence 999 78777766 467899998 444 55555 88889999999999999999999999999998754211 122 3
Q ss_pred CCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccC-CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
+|. ..|.+++|+|||++|++ +.|++|++||+.. ..+.......+|...|.+++|+|||++||+|+.|++|++||+
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 344 67999999999999999 5699999999943 332221122348999999999999999999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCC-CCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSN-TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
.++..... ....+| ...|.+++|+| +++ |++++.|++|++|++.
T Consensus 566 ~~~~~~~~---------~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 566 NKPSDHPI---------IIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TCTTSCCE---------EETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCcccccc---------hhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 98753210 012377 78999999999 666 9999999999999983
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.7e-65 Score=618.24 Aligned_cols=566 Identities=15% Similarity=0.172 Sum_probs=456.9
Q ss_pred CCcceeeecCCCCCCceee------cCCcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccc
Q 001157 313 GQSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (1135)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~ 385 (1135)
+.+.+++|+|||+.++... ++...++...++. |.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~- 96 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK- 96 (611)
T ss_dssp TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-
T ss_pred CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee-
Confidence 3556688888887766554 2323455566665 999999999999998 799999999999999976543221
Q ss_pred cceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEE
Q 001157 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 461 (1135)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 461 (1135)
..+.+|.++|.+++|+|||++||+++.+ +.|++|| .++... .+.+|...|++++|
T Consensus 97 ----------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 97 ----------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDF 155 (611)
T ss_dssp ----------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEE
T ss_pred ----------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEE
Confidence 1256799999999999999999999875 3677777 444444 67899999999999
Q ss_pred ecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec---
Q 001157 462 AHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--- 538 (1135)
Q Consensus 462 s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--- 538 (1135)
+|++.. .|++|+.|++|++||..+++++.++.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 156 ~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~ 232 (611)
T 1nr0_A 156 KPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDS 232 (611)
T ss_dssp CSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred CCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence 999874 59999999999999999999999999999999999998865 899999999999999999888877763
Q ss_pred ----CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC--ceeEEEEeCCCCEEEEEecCCeE
Q 001157 539 ----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 539 ----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
.|...|.+++|+|++++|++++. |++|++||+.+++.+..+..+... ....+.| +++.+++++.|+.+
T Consensus 233 ~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 233 LKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI 306 (611)
T ss_dssp SSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred ccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcE
Confidence 68889999999999999999985 789999999999998888754321 3444555 67899999999999
Q ss_pred EEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCc
Q 001157 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1135)
++|+...++....+.+|. ..|.+++|+|+|++|++++.|++|++||+.++ .....+.
T Consensus 307 ~~~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~-------------------- 363 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP-------------------- 363 (611)
T ss_dssp EEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS--------------------
T ss_pred EEEeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-ceeeecc--------------------
Confidence 999999998887777664 48999999999999999999999999999876 2221110
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCC
Q 001157 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1135)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1135)
..|.
T Consensus 364 ----------------------------------------------------------------------------~~h~ 367 (611)
T 1nr0_A 364 ----------------------------------------------------------------------------DVHA 367 (611)
T ss_dssp ----------------------------------------------------------------------------CSCS
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 1266
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..|.+++|++++ .+++++.|+.+++|+......... ...... . .....+++|+|+|
T Consensus 368 ~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~dg 423 (611)
T 1nr0_A 368 TMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANK-----L-SSQPLGLAVSADG 423 (611)
T ss_dssp SCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEE-----C-SSCEEEEEECTTS
T ss_pred ceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeee-----c-CCCCcEEEEeCCC
Confidence 778999999876 588999999999998754221100 000001 1 3456789999999
Q ss_pred CEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEeecCccCceEEE
Q 001157 853 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGL 930 (1135)
Q Consensus 853 ~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~~l 930 (1135)
+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|...|+++
T Consensus 424 ~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v 497 (611)
T 1nr0_A 424 DIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV 497 (611)
T ss_dssp SCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE
T ss_pred cEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE
Confidence 998888899999999 344 55555 788899999999 899999999999999999988754 334 6899999999
Q ss_pred EEcCCCCeEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEecc-CCcc
Q 001157 931 AFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECS 1007 (1135)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~-~~~~ 1007 (1135)
+|+|||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+. +...
T Consensus 498 ~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 498 AFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred EECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 9999999999999999999999987 432111 0122355 68999999999999999 569999999993 3322
Q ss_pred cccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 1008 RSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1008 ~~~~~~~~h-~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
. .....+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 572 ~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 572 P-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp C-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred c-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 1 0123467 78999999999999 9999999999999974
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-64 Score=613.24 Aligned_cols=555 Identities=21% Similarity=0.367 Sum_probs=477.2
Q ss_pred cccCCcceeeecCCCCCCceeecCC------cceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccc
Q 001157 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1135)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~ 382 (1135)
.|.+.|.+++|+|||+++++...|. .++++++++. |.+.|++++|||||+ +||+|+.|++|+|||+. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 4567899999999999988876543 4677888888 999999999999998 78899999999999964 4444
Q ss_pred ccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe
Q 001157 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1135)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 462 (1135)
.. +.+|.+.|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999977642 22567899999999999
Q ss_pred cCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC
Q 001157 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 542 (1135)
|++. .+++++.++.+++|+. ..........|...|.+++++|++ .++++++.|+.|++||. +++....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 9999 7899999999999995 455666777899999999998865 89999999999999995 4566778888999
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++|+.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcE
Confidence 9999999999999999874 788999995 5778888888877 89999999999999999999999999964 566
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+..+..|. ..|.+++|+|++++|++++.|+.|++||.... . ...+.
T Consensus 296 ~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~~------------------------------ 341 (577)
T 2ymu_A 296 LQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTLT------------------------------ 341 (577)
T ss_dssp EEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEEC------------------------------
T ss_pred EEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEEe------------------------------
Confidence 77776654 47999999999999999999999999997543 1 11111
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 782 (1135)
+|...+.+++|+|
T Consensus 342 -------------------------------------------------------------------~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 342 -------------------------------------------------------------------GHSSSVWGVAFSP 354 (577)
T ss_dssp -------------------------------------------------------------------CCSSCEEEEEECT
T ss_pred -------------------------------------------------------------------CCCCCEEEEEECC
Confidence 1556789999999
Q ss_pred CcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CC
Q 001157 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG 861 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg 861 (1135)
+|+.+++++.++.+++|+... ..+.. +.+ | ...|.+++|+|||++|++++ |+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCCC
Confidence 999999999999999997421 11111 222 6 88999999999999999998 89
Q ss_pred eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEE
Q 001157 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1135)
.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999995 5788899999999999999999 8999999999999999996 57788899999999999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEeccCCcccccCCCCCCCCCe
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1020 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~h~~~i 1020 (1135)
++.|++|++||.. ++ .+..+.+|. ..|++++|+|||++|++ +.|+.|++||.+++.+..+ .+|..+|
T Consensus 485 ~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v 552 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSV 552 (577)
T ss_dssp EETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCE
T ss_pred EeCCCEEEEEcCC-CC-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCCE
Confidence 9999999999964 33 344455666 68999999999999999 5689999999977776665 4679999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEe
Q 001157 1021 SSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 1021 ~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
++++|+|||++|++++.||+|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.7e-64 Score=665.96 Aligned_cols=613 Identities=14% Similarity=0.168 Sum_probs=506.7
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.|.+.|++++|||||+ ++++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 4899999999999998 789999999999999999887653 67899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
|+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999987665 77899999999999996554489999999999999999999999999999999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------------CCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+|+|++ .++++++.||+|++||+.++.....+... ...+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 998865 89999999999999999987766554321 23688999999999999886 56799
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 650 (1135)
+||+.++..+..+...+...+.+++|+|+++++++++.||.|++|++.++..+..+..|.. .|.+++|+|+|++++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEE
Confidence 9999999998888754455899999999999999999999999999999999998887644 79999999999999999
Q ss_pred eCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCC
Q 001157 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.||.|++|++.+... ......... ...
T Consensus 901 s~dg~v~vw~~~~~~~-~~~~~~~~~---------------------------------------------------~~~ 928 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCK-NSAIVLKQE---------------------------------------------------IDV 928 (1249)
T ss_dssp ETTSCEEEEEHHHHHS-CCSSSEEEE---------------------------------------------------EEE
T ss_pred eCCCeEEEEEccccce-eeeecccce---------------------------------------------------eeE
Confidence 9999999999865411 111000000 000
Q ss_pred cccccCccccc-cccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 731 SRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 731 ~~~~~~~~~~~-~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
...++...++. ...+.+.+|..... .... .....+.+++++|+++.+++++.+|.|++|++..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------ 992 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTG----QIDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------ 992 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSC----CEEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT------
T ss_pred EEcCCCcEEEEecCCcceEEEecCcc----eEEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC------
Confidence 00111111111 12234444443321 1111 1346799999999999999999999999998643
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEE
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 888 (1135)
+..... +.+ | ...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++
T Consensus 993 ----------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 993 ----------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFR 1051 (1249)
T ss_dssp ----------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEE
T ss_pred ----------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEE
Confidence 222211 223 7 88999999999999999998 9999999999988764 557999999999
Q ss_pred EeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001157 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1135)
Q Consensus 889 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1135)
|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+|+++++++++.|++|++||+.+++ .+....
T Consensus 1052 ~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~ 1124 (1249)
T 3sfz_A 1052 LLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELK 1124 (1249)
T ss_dssp ECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCC
T ss_pred EcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeec
Confidence 999 65 56789999999999999999999999999999999999999999999999999999999877 344556
Q ss_pred CCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec-cCCcccccC------CCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001157 969 GRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1135)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~-~~~~~~~~~------~~~~h~~~i~~~~~s~dg~~l~s~~~dg~ 1040 (1135)
+|. ..|.+++|+|||++|+++ .||.|++||+ +++.+..+. ...+|...|++++|+|||++|++++ |.
T Consensus 1125 ~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~ 1199 (1249)
T 3sfz_A 1125 GHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY 1199 (1249)
T ss_dssp CCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS
T ss_pred cCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce
Confidence 666 689999999999999994 6899999999 666555441 1245789999999999999999885 89
Q ss_pred EEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1041 V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
|++||+.+++.+..+. +|...+.+++|+| ++++|++++.||.|++|++.
T Consensus 1200 v~vwd~~~g~~~~~~~-----------~~~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFY-----------TNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEEBCSSSCBCCCCCC-----------CSSCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred EEEEECCCCceeeeee-----------ccCCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 9999999998876654 5667888999999 88999999999999999985
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.2e-59 Score=572.07 Aligned_cols=556 Identities=10% Similarity=0.176 Sum_probs=473.5
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc----cccccccceeecccccccccccccccccCCC-eeEEEEcC-
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 418 (1135)
|.+.|++++|||||+ +|++++ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECcC
Confidence 678999999999998 677776 889999999987 4443 26789999 99999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC-----ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCe
Q 001157 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1135)
Q Consensus 419 -dg~~la~~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~ 488 (1135)
++++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997551 1123336778999999999999999 88888877 6788887 778
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC---eEEEEEEcCC-CCEEEEEeeCCC
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 564 (1135)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999998752 3899999999999999999988889998988 9999999999 999999874
Q ss_pred CCceEEEEeCCCCceeEEe-e---cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC--CCCcCeE
Q 001157 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 638 (1135)
++.|++||+.+++.+..+ . .|.. .|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 778999999999999998 5 5655 89999999 999999999999999999999999998886631 1346677
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCC
Q 001157 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1135)
Q Consensus 639 ~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1135)
.|. ++.++++++.||.|++||+.++ +....+.+|...+..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------------------- 344 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------------------- 344 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE--------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE--------------------------------------
Confidence 775 8999999999999999999887 666777776654331
Q ss_pred CcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEE
Q 001157 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 798 (1135)
..+ ++ .+..+.|+.+++|++. .+. ..|...|.++++ +++..+++++.|+.+++
T Consensus 345 -----------~~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 345 -----------LTV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp -----------EET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred -----------EEe-cC--cEEECCCCeEEEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 122 23 5566678999999987 122 348899999999 66788999999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEee
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~ 878 (1135)
|++..... ...+.+++++|++.+++++.++.+.+|++.+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 98754221 235788999999999999889999999999999998887
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeC-CccEEEEEcccceEe-EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 879 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 879 ~~~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
|...+++++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 88999999998 579999999 999999999998776 778899999999999999999999999999999999987
Q ss_pred ccccceeeecCCC-CCCCCCCceeEEECC----------CCcEEEEE-ECCcEEEEec-cC-CcccccCCCCCCCCCeEE
Q 001157 957 EKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLVV-HESQISVYDS-KL-ECSRSWSPKDALPAPISS 1022 (1135)
Q Consensus 957 ~~~~~~~~~~~~~-~~~~~~~v~~~~fsp----------dg~~l~~~-~d~~i~vwd~-~~-~~~~~~~~~~~h~~~i~~ 1022 (1135)
+. +....+ |. ..|.+++|+| ++++|+++ .|+.|++||+ +. +.+..+ .+|...|++
T Consensus 521 ~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~ 589 (615)
T 1pgu_A 521 EV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNN 589 (615)
T ss_dssp EE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEE
T ss_pred cc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh---hcCccceEE
Confidence 73 444454 55 7899999999 99999995 6899999999 44 444443 567999999
Q ss_pred EEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1023 ~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
++|+||++ |++++.||.|++|++++
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999 99999999999999975
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-58 Score=613.11 Aligned_cols=571 Identities=16% Similarity=0.247 Sum_probs=478.1
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987665 7789999999999999999 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
|+.+++.+..+.+|...|.+++|+|+.++.++++++.|+.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9999999999999999999999999877789999999999999999999999999999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeeccc------------CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFR------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1135)
++.|++||+.+++....+.... ...+.+++|+|+|+.+++++ ++.+.+||+.++..+..+.. .
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 7889999999988777664321 12578899999999999987 78999999999998887763 2
Q ss_pred CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 631 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
+...|.+++|+|++.++++++.||.|++|++.++ .....+.+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~------------------------------------- 880 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG------------------------------------- 880 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC-------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCC-------------------------------------
Confidence 3457999999999999999999999999999876 33333322
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
|...|.+++|+|+|+.++++
T Consensus 881 ------------------------------------------------------------h~~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 881 ------------------------------------------------------------HLSWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp ------------------------------------------------------------CSSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------------CccceEEEEECCCCCEEEEE
Confidence 56678999999999999999
Q ss_pred cccceeEEEeecccCCCCCCcccc------------------cccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATA------------------NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
+.||.+++|++............. .....+++..++..... + ...+.+++|+|++
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL------P-EAQVSCCCLSPHL 973 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE------C-CSCEEEEEECTTS
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc------c-cCcEEEEEEcCCC
Confidence 999999999976432111100000 00122333333332221 2 6679999999999
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEE
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
+++++|+ +|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFR 1051 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEE
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEE
Confidence 9999999 89999999999999999999999999999999 8999999999999999999999876 4568999999999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec-cCCcccc
Q 001157 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRS 1009 (1135)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~-~~~~~~~ 1009 (1135)
|+|++ .+++++.|++|++||+.+++.. ....+|. ..|.+++|+|||+++++ +.|+.|++||+ ++..+..
T Consensus 1052 ~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~ 1122 (1249)
T 3sfz_A 1052 LLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122 (1249)
T ss_dssp ECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC
T ss_pred EcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee
Confidence 99976 5788999999999999998743 3334444 67899999999999999 57999999999 5655554
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
+ .+|...|++++|+|||++|++|+.||.|++||+.+++.+..+..... .....+|...+.+++|+| ++++|+++
T Consensus 1123 l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~fs~-dg~~l~s~ 1196 (1249)
T 3sfz_A 1123 L---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV--EEGTATHGGWVTDVCFSP-DSKTLVSA 1196 (1249)
T ss_dssp C---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECT-TSSCEEEE
T ss_pred e---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc--cccccccCceEEEEEECC-CCCEEEEC
Confidence 4 46789999999999999999999999999999999998876632211 111247888999999999 88899888
Q ss_pred ecCCcEEEEecCCCccccC
Q 001157 1090 MSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1090 ~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
+ |.|++||+.+++....
T Consensus 1197 ~--g~v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1197 G--GYLKWWNVATGDSSQT 1213 (1249)
T ss_dssp S--SSEEEBCSSSCBCCCC
T ss_pred C--CeEEEEECCCCceeee
Confidence 5 9999999998875433
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-57 Score=569.40 Aligned_cols=601 Identities=10% Similarity=0.057 Sum_probs=439.3
Q ss_pred EEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC
Q 001157 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
...+.|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|..+|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34456899999999999998 89999999999999987765432 124788999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE---------
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 490 (1135)
|++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ +|++|+.||.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 443 678999999999999 8999999999999999988764
Q ss_pred --EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------------------CCeEEEEEEc
Q 001157 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1135)
Q Consensus 491 --~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1135)
..+.+|.+.|.+++|+|++ +..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999999853 3689999999999 9999998877777655 4679999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCceeEE--e---ecc------------cCCceeEEEEeC----CC-CEEEEEec
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--Y---SGF------------RKRSLGVVQFDT----TR-NRFLAAGD 608 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~---~~~------------~~~~v~~~~~s~----~~-~~l~~~~~ 608 (1135)
|+|++|++++. |+.|++||+++++++.. + ..| +...|.+++|++ ++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 78899999999987654 2 122 123699999964 43 45666766
Q ss_pred C-----CeEEEEECC------------------CCeeeEEEeCCCCCCCcCeEEEec----------CCCEEEEEeCCCc
Q 001157 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1135)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~ 655 (1135)
+ +.+.+|++. +.+....+... +...|..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22333444321 123577777755 3447888999999
Q ss_pred EEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccccc
Q 001157 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 656 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|++|++.++.........+... . +.. +.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l-~-----------------~~~----------------------------------~~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL-S-----------------WLR----------------------------------PL 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG-T-----------------TBT----------------------------------TB
T ss_pred EEEEECCCCCcccccccCCCcc-c-----------------ccC----------------------------------CC
Confidence 9999997763222211111000 0 000 00
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
... +...+....+|+......... ..+-.+|...+.+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~~-~~~s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~------ 472 (902)
T 2oaj_A 404 ATT-SMAASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN------ 472 (902)
T ss_dssp EEE-EEEEEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT------
T ss_pred eeE-EEEEEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC------
Confidence 000 000112234454321110000 012234677788899999999999999999999999865421000
Q ss_pred ccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCc-----------------------
Q 001157 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 871 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~----------------------- 871 (1135)
.++... +.. ..+..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ---~~~~~~----l~~-~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 473 ---ASFEVN----LSR-TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ---BCEEEE----HHH-HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ---ceEEee----chh-hcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 000000 000 001137 88999999999999999999 999999999765
Q ss_pred ----------------------eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-----eec-Cc
Q 001157 872 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 923 (1135)
Q Consensus 872 ----------------------~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h 923 (1135)
+++..+.+|.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 34778889999999999999 88 99999999999999998887654 343 89
Q ss_pred cCceEEEEEc-----CCC---CeEEEEcCCCcEEEEeC---CCcccccceeeecCCCCCC--CCCCceeEE-EC------
Q 001157 924 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQS--PLVGETKVQ-FH------ 983 (1135)
Q Consensus 924 ~~~i~~l~~s-----~d~---~~l~s~~~D~~i~iWd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-fs------ 983 (1135)
.+.|++|+|+ ||| ++|++++.|++|++||+ .+|+.... +.+|.. ....|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~ 696 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ-----LMDITNVTSKGPIHKIDAFSKETKSS 696 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE-----EEEEEECCSSCCCCEEEEEETTTCCB
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE-----ecCceecCCCCceEEEEeEecCCCCc
Confidence 9999999999 886 89999999999999999 66663322 222210 014555555 55
Q ss_pred ----------------CCCcEEEEEECCcEEEEec-cCCcccccCCCCCCCCCeEEE---E------EccCCCEEEEEec
Q 001157 984 ----------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFC 1037 (1135)
Q Consensus 984 ----------------pdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~---~------~s~dg~~l~s~~~ 1037 (1135)
+++..|+ +.+..|+||++ ++++..... +|...+.++ . |+++|..|++++.
T Consensus 697 ~~a~~~~~~~l~~~~~~~~~~l~-~~~~~ir~~~~~~~k~~~k~~---~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
T 2oaj_A 697 CLATIPKMQNLSKGLCIPGIVLI-TGFDDIRLITLGKSKSTHKGF---KYPLAATGLSYISTVEKNNDRKNLTVIITLEI 772 (902)
T ss_dssp CBCBHHHHHGGGGTCCCCEEEEE-ECSSEEEEECTTCCCEEEEEC---SSCEEEEEEEEEEEECSSSCEEEEEEEEEEET
T ss_pred ccCCHHHHhccCCCCCCCeEEEE-EeccceEEEeCccccceeeEc---ccceeeeEEEEEEeccccccccCceEEEEEeC
Confidence 5555444 44889999999 667765542 234566665 5 7899999999999
Q ss_pred CCcEEEEecCCCceeeccCCC
Q 001157 1038 DGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 1038 dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
||.|++|++.+++++..+...
T Consensus 773 ~g~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 773 NGHLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp TSEEEEEETTTCCEEEEEECS
T ss_pred CCcEEEEECcchHHHhhccCC
Confidence 999999999999999888654
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.5e-57 Score=553.22 Aligned_cols=557 Identities=9% Similarity=0.085 Sum_probs=460.3
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CceeeeeEeecCCCC-eeEEEEec--CCCceEEEEEcCCC
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGG-VNDIAFAH--PNKQLCIVTCGDDK 477 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~l~~s~--d~~~~~l~s~~~d~ 477 (1135)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 46889999999999999999998 889999999987 5544 78899999 99999999 999 899999999
Q ss_pred cEEEEEcCCC--------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCceEEecCCCCeEE
Q 001157 478 MIKVWDVVAG--------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 478 ~i~iwd~~~~--------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.+ +.|++|| .++....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999855 6778888999999999998865 899999988 6888887 5677788889999999
Q ss_pred EEEEcCCCC-EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC--ceeEEEEeCC-CCEEEEEecCCeEEEEECCCCe
Q 001157 546 MMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+++|+|+++ .+++++. ++.|++||+.+++.+..+.+|... .|.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6777764 789999999999999999887542 6999999999 9999999999999999999999
Q ss_pred eeEEE-e---CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 622 MLTTV-D---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 622 ~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
.+..+ . .+ ...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+.......
T Consensus 241 ~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~---------------- 300 (615)
T 1pgu_A 241 FLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQ---------------- 300 (615)
T ss_dssp EEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGGC----------------
T ss_pred EeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccCc----------------
Confidence 98888 3 44 4479999999 9999999999999999999988 5555555432110000
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc-ccccccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV-AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
..... .+++..++ .+.++.+++|++..... ...+. +|...|.
T Consensus 301 -----------------------------~~~~~-~~~~~~l~~~~~~g~i~~~d~~~~~~-----~~~~~--~~~~~v~ 343 (615)
T 1pgu_A 301 -----------------------------QVGVV-ATGNGRIISLSLDGTLNFYELGHDEV-----LKTIS--GHNKGIT 343 (615)
T ss_dssp -----------------------------EEEEE-EEETTEEEEEETTSCEEEEETTEEEE-----EEEEC--CCSSCEE
T ss_pred -----------------------------eeEEE-eCCCCeEEEEECCCCEEEEECCCCcE-----EEEEe--CCCCCEE
Confidence 00011 12444444 45569999999885221 11222 4888999
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
+++| |+ +++++.||.|++|++. .+. ..| ...|.+++| +++.+++
T Consensus 344 ~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~~-----~~~-~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 344 ALTV-NP---LISGSYDGRIMEWSSS-------------------------SMH-----QDH-SNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp EEET-TT---TEEEETTSCEEETTTT-------------------------EEE-----CCC-CSCEEEEEC-CSTTCCE
T ss_pred EEEe-cC---cEEECCCCeEEEEEch-------------------------hhc-----Ccc-cCceEEEEE-CCCcEEE
Confidence 9999 88 9999999999999752 111 227 889999999 6677788
Q ss_pred EEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCC
Q 001157 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1135)
Q Consensus 857 ~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1135)
+++ |+.|++||+.+++.. ..+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+++++|+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 455 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFG-------SQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-- 455 (615)
T ss_dssp EEETTTEEEETTEEEEECS-------SCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--
T ss_pred EEeCCCCEEEEEcccCccc-------CCceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--
Confidence 887 999999998765432 2788999999 88888877 88899999999999888887 88999999999
Q ss_pred CCeEEEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEec-cCCcccccCC
Q 001157 936 LNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSP 1012 (1135)
Q Consensus 936 ~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~-~~~~~~~~~~ 1012 (1135)
+++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|+++ .|+.|++||+ +++.+..+..
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 889999999 9999999999865321 4445555 689999999999999995 6899999999 6666555432
Q ss_pred CCCCCCCeEEEEEcc----------CCCEEEEEecCCcEEEEecCCC-ceeeccCCCcccCccccCCCCCCcEEEeeCCC
Q 001157 1013 KDALPAPISSAIYSC----------DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1013 ~~~h~~~i~~~~~s~----------dg~~l~s~~~dg~V~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 1081 (1135)
.|...|++++|+| ++++|++++.||.|++||+.++ +.+..+. +|...+.+++|+|
T Consensus 529 --~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~h~~~v~~l~~s~- 594 (615)
T 1pgu_A 529 --FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-----------AHKDGVNNLLWET- 594 (615)
T ss_dssp --CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-----------SSTTCEEEEEEEE-
T ss_pred --CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-----------cCccceEEEEEcC-
Confidence 2689999999999 9999999999999999999988 5655543 7889999999999
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001157 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
+++ |++++.||+|++|++..
T Consensus 595 ~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TTE-EEEEETTSCEEEEEEC-
T ss_pred CCC-eEEecCCceEEEEeeec
Confidence 667 99999999999999975
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-55 Score=550.09 Aligned_cols=585 Identities=11% Similarity=0.096 Sum_probs=429.7
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+... . ..|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 34799999999999999999999999999999988754332 2 35788999999999 77 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce-----------EEecCCCCeEEEEEEcCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 552 (1135)
+.+++++..+. |...|++++|+|++ +++++|+.||+|++||+++.... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999998865 89999999999999999877643 123557789999999997
Q ss_pred C-CEEEEEeeCCCCCceEEEEeCCCCceeEEeecc-----------------cCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 553 G-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 553 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
+ ..+++++ .++.| +||+++++.+..+..| +...|.+++|+|+|++|++++.||+|++
T Consensus 163 ~~~~l~~g~----~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISY----EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEEC----SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEe----CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 5677765 37889 9999999999888765 1237999999999999999999999999
Q ss_pred EECCCCeeeEEEeC-----CC-----------CCCCcCeEEEec----CC-CEEEEEeCC-----CcEEEEECCCcchhe
Q 001157 615 WDMDNMNMLTTVDA-----DG-----------GLPASPRLRFNK----EG-SLLAVTTSD-----NGIKILANSDGVRLL 668 (1135)
Q Consensus 615 wd~~~~~~~~~~~~-----~~-----------~~~~v~~~~~s~----~~-~~l~~~~~d-----g~v~iw~~~~~~~~~ 668 (1135)
||+.+++++..... +. +...|.+++|++ ++ .+|++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 99999988764221 21 233689999964 43 567777665 3677887421100 0
Q ss_pred eeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccccccccccc
Q 001157 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1135)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 748 (1135)
...+.+....
T Consensus 317 ----------------------------------------------------------------------~~~s~~~~~~ 326 (902)
T 2oaj_A 317 ----------------------------------------------------------------------SITSYEGMKN 326 (902)
T ss_dssp ----------------------------------------------------------------------GGCCHHHHHH
T ss_pred ----------------------------------------------------------------------cccchhhhhh
Confidence 0000111111
Q ss_pred ccccCcccCCCceeEEEcCCCCCCCceEEEEEeC----------CcceeeeecccceeEEEeecccCCCCC---------
Q 001157 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS--------- 809 (1135)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----------~g~~l~~~~~dg~i~iw~~~~~~~~~~--------- 809 (1135)
+|+-. ...+.+.+ .+...+..+.+.+ ++..+++++.||.+++|++........
T Consensus 327 ~~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 327 YYANP-----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHHSC-----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hhcCc-----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 11100 00111111 1345677777655 334688888999999999854311000
Q ss_pred Cc--cc-----ccccceeccCC---CCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE----
Q 001157 810 GK--AT-----ANVAPQLWQPP---SGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM---- 874 (1135)
Q Consensus 810 ~~--~~-----~~~~~~~~~~~---~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~---- 874 (1135)
+. .+ ......+|+.. .+. ....+.+ | ...+.+++|+||+++||+|+ |++|++||+.++...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~-~~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQN-KDYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBC-CCCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccC-CCCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 00 00 00011233311 011 1123444 6 77788899999999999999 999999999876421
Q ss_pred EE--ee-----CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---------------------------------
Q 001157 875 TM--FM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--------------------------------- 914 (1135)
Q Consensus 875 ~~--~~-----~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--------------------------------- 914 (1135)
.. +. +|...|++++|+| ++++||+|+.||+|+|||+.++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 11 11 7889999999999 9999999999999999999876
Q ss_pred ------------eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCC-CCCCCCCCceeEE
Q 001157 915 ------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 981 (1135)
Q Consensus 915 ------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 981 (1135)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||++++..+....+..+. +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 3467889999999999999999 9999999999999999886643221223443 666 7899999
Q ss_pred EC-----CCC---cEEEE-EECCcEEEEec----cCCcccccCCCC--CCCCCeEEEE-Ec-------------------
Q 001157 982 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1026 (1135)
Q Consensus 982 fs-----pdg---~~l~~-~~d~~i~vwd~----~~~~~~~~~~~~--~h~~~i~~~~-~s------------------- 1026 (1135)
|+ ||| ++|++ +.|++|++||+ ++++...+..+. .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 57999999998 445554443321 2357888777 66
Q ss_pred ---cCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE---e------eCCCCCCEEEEEecCCc
Q 001157 1027 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI---A------PHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1027 ---~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~sp~~~~~l~s~~~Dg~ 1094 (1135)
++|.+|+++ +..|+||++.+++...... +|...+..+ . |++ ++..|++.+.||+
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-----------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~ 775 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-----------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGH 775 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-----------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEc-----------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCc
Confidence 456555554 7789999999998876552 333444444 4 566 7789999999999
Q ss_pred EEEEecCCCcc
Q 001157 1095 VHVVEPSDAEL 1105 (1135)
Q Consensus 1095 i~lW~~~~~~~ 1105 (1135)
|++|++.+.+.
T Consensus 776 i~~~s~p~l~~ 786 (902)
T 2oaj_A 776 LRVFTIPDFKE 786 (902)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECcchHH
Confidence 99999998883
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.8e-48 Score=488.31 Aligned_cols=565 Identities=16% Similarity=0.229 Sum_probs=421.8
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..+.+. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|.++|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 345555 899999999999998 788999999999999999876653 56799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h 496 (1135)
|++++|++|+.||.|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987665 6788999999999999999 8999999999999999987 777888999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC-CeEEEEEEcC--CCCEEEEEeeCCCCCceEEEEe
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999983 23899999999999999999888777766554 7899999999 9999999874 78899999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC--EEEEEe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~ 651 (1135)
+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~- 290 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG- 290 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-
Confidence 999999999998876 899999999999999999999999999999999998886644 799999999987 45554
Q ss_pred CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCc
Q 001157 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1135)
Q Consensus 652 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1135)
.++.+.+|++..+.
T Consensus 291 ~~~~~~~~~~~~~~------------------------------------------------------------------ 304 (814)
T 3mkq_A 291 FDNGFTVLSLGNDE------------------------------------------------------------------ 304 (814)
T ss_dssp ETTEEEEEECSCCS------------------------------------------------------------------
T ss_pred eCCCEEEEEcCCCC------------------------------------------------------------------
Confidence 56678888865431
Q ss_pred ccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccccee-EEEeecccCCCCCC
Q 001157 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSG 810 (1135)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i-~iw~~~~~~~~~~~ 810 (1135)
..+.++|+|+.+++++.+... .++...
T Consensus 305 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 332 (814)
T 3mkq_A 305 --------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAV-------- 332 (814)
T ss_dssp --------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEE--------
T ss_pred --------------------------------------------ceeEECCCCCEEEECcccccceeeeeee--------
Confidence 113345555555544433210 000000
Q ss_pred cccccccceeccCCCCCccccCCCC-CCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEE
Q 001157 811 KATANVAPQLWQPPSGTLMTNDINE-SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 889 (1135)
....|+...+......... ..| ...+.+++|+|+|+++++++++.+.+|++....... .+.+++++|
T Consensus 333 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~ 400 (814)
T 3mkq_A 333 ------IRGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVW 400 (814)
T ss_dssp ------CCSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEE
T ss_pred ------cccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEE
Confidence 0011222222222111100 114 667899999999999999999999999987654432 456889999
Q ss_pred eCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC---CeEEEEcCCCcEEEEeCCCcccccceeeec
Q 001157 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1135)
Q Consensus 890 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~ 966 (1135)
+| +++++|+++.+|.|++|+ .+.+|...+.+++|+|++ .+|++++.|++|++||+.+++. +..
T Consensus 401 sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~ 466 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL-----VRR 466 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE-----EEE
T ss_pred eC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE-----EEE
Confidence 99 899999999999999995 456688889999999998 6899999999999999998773 333
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEE------ECCcEEEEeccC-Ccccc-----cCCCCCC----------CCCeEEEE
Q 001157 967 PAGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYDSKL-ECSRS-----WSPKDAL----------PAPISSAI 1024 (1135)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~~l~~~------~d~~i~vwd~~~-~~~~~-----~~~~~~h----------~~~i~~~~ 1024 (1135)
..++. ..++|+|||++|+++ .+..+.++..+. ..... .....+. ...|.+.+
T Consensus 467 ~~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~ 540 (814)
T 3mkq_A 467 IDVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK 540 (814)
T ss_dssp ESSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEE
T ss_pred EecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeE
Confidence 44332 389999999999997 566666554311 00000 0000000 12233444
Q ss_pred EccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1025 YSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1025 ~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
| ++.+.+|....+.......... ..+......+..+.|.+ +++.++....++.++.|++....
T Consensus 541 w------------~~~~~i~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~~l~~~~ 603 (814)
T 3mkq_A 541 W------------VGDVFIFTTATNRLNYFVGGKT----YNLAHYTKEMYLLGYLA-RDNKVYLADREVHVYGYEISLEV 603 (814)
T ss_dssp E------------ETTEEEEECTTSEEEEEETTEE----EEEEECSSCCEEEEEEG-GGTEEEEECTTCCEEEEECCHHH
T ss_pred E------------eCCEEEEEcCCCeEEEEeCCee----EEEEECCccEEEEEEEe-cCCEEEEEcCCCCEEEEEECcHH
Confidence 4 3444444432222111110000 00112223455566777 66788888899999999986443
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.1e-46 Score=471.68 Aligned_cols=466 Identities=15% Similarity=0.186 Sum_probs=380.2
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987665 6778999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-CceEEecCCCCeEEEEEEcC-CCCEEEEEee
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++ .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998865 89999999999999999887 45567788999999999999 8889998874
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC--CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 788999999999888888887755899999999 999999999999999999999999999887644 799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|+++++++++.||.|++||+.++ +....+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------- 268 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------- 268 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec----------------------------------------------
Confidence 9999999999999999999999876 33332221
Q ss_pred cccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCccee-eeecccceeEE
Q 001157 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKL 798 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~i 798 (1135)
+...+.+++++|+|..+ ++.+.++.+.+
T Consensus 269 ---------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 269 ---------------------------------------------------GLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp ---------------------------------------------------SSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred ---------------------------------------------------CCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 44578999999999764 66677777888
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CC---eEEE------EeC
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FNM 868 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg---~i~i------wd~ 868 (1135)
|++. .....+.++|+|+.+++++ +. .+.. |++
T Consensus 298 ~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 298 LSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 8642 2233578899999999886 32 1222 333
Q ss_pred CCceE----EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcC
Q 001157 869 MTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 869 ~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
..+.. ...+..+...+++++|+| ++++|++++ |+.+.+|++...... +.+.+.+++|+||++++++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECT
T ss_pred ccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeC
Confidence 33222 233445666788899999 888888887 788999987654332 3456778888888888888888
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEE
Q 001157 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1024 (1135)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~ 1024 (1135)
|+.|++|+.-. +|...+.+++
T Consensus 413 ~g~v~l~~~~~-----------------------------------------------------------~~~~~v~~~~ 433 (814)
T 3mkq_A 413 TGQIKYYKNFK-----------------------------------------------------------EVTSWSVPMH 433 (814)
T ss_dssp TCCEEEEETTE-----------------------------------------------------------ECTTCCCCCS
T ss_pred CCcEEEEECCC-----------------------------------------------------------CccceEEcCC
Confidence 88888885221 1234455667
Q ss_pred EccCC---CEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE------ecCCcE
Q 001157 1025 YSCDG---LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG------MSDGAV 1095 (1135)
Q Consensus 1025 ~s~dg---~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~------~~Dg~i 1095 (1135)
|+||| ++|++++.|+.|++||+.+++.+..+. .|.. .+.|+| ++++|+++ +.+..+
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-----------~~~~---~v~~s~-dg~~la~~~~~~~~~~~~~~ 498 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRID-----------VNAK---DVIWSD-NGELVMIVNTNSNGDEASGY 498 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEES-----------SCEE---EEEECT-TSSEEEEEECCCSSCSCSEE
T ss_pred cCccceecceEEEEecCCEEEEEECCcCcEEEEEe-----------cCCC---EEEEcC-CCCEEEEEEcCcccCCceEE
Confidence 77777 578888999999999999999888775 2322 899999 88999999 666655
Q ss_pred EEEe
Q 001157 1096 HVVE 1099 (1135)
Q Consensus 1096 ~lW~ 1099 (1135)
.+|.
T Consensus 499 ~~~~ 502 (814)
T 3mkq_A 499 TLLF 502 (814)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-44 Score=415.14 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=263.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 677999999999998 799999999999999999876653 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~ 504 (1135)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.+++
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999887665 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC--------------------CCEEEEEeeCCC
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 564 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~~ 564 (1135)
+++++ .++++++.|++|++||+.+.+....+..|...|.+++|+|+ +.++++++.
T Consensus 242 ~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 98755 89999999999999999999999999999999999999996 678898874
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
|+.|++||++++.++..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++++..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 88899999999999999999887 899999999999999999999999999999999999987754 79999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001157 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~ 661 (1135)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=360.47 Aligned_cols=293 Identities=14% Similarity=0.209 Sum_probs=263.7
Q ss_pred eeEEEEec-CCCCeeEEEeecC----CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCe
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspd----g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+...+. |.+.|++++|+|+ ++ +|++|+.|++|+||++.+++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 34445555 9999999999985 44 799999999999999987643211 1267899999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE
Q 001157 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987665 6778889999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+..|...|.+++|+|++ ++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++
T Consensus 159 ~~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999998865 89999999999999999999988899999999999999999999999974 788999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
||+++++....+.+|.. .|.+++|+|++++|++++.|++|++||+.+++++..+..|. ..|.+++|+|++.+|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEe
Confidence 99999999999999887 89999999999999999999999999999999999988664 4799999999999999999
Q ss_pred CCCcEEEEEC
Q 001157 652 SDNGIKILAN 661 (1135)
Q Consensus 652 ~dg~v~iw~~ 661 (1135)
.||.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-39 Score=361.25 Aligned_cols=292 Identities=20% Similarity=0.315 Sum_probs=262.4
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
....++. |.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 105 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEE
Confidence 4556666 899999999999998 789999999999999998876543 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcC
Confidence 99999999999999999999987642 233446789999999999999875 88999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|...|.+++|+|++ .++++|+.|++|++||++++.....+..|...|.+++|+|++++|++++. ++.|++||++
T Consensus 183 h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~ 256 (340)
T 1got_B 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECC
Confidence 99999999998865 89999999999999999999999999999999999999999999999984 7889999999
Q ss_pred CCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 576 EGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
+++.+..+.... ...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|+|.+|++|+.|+
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCc
Confidence 998887775432 22689999999999999999999999999999999999987754 899999999999999999999
Q ss_pred cEEEEE
Q 001157 655 GIKILA 660 (1135)
Q Consensus 655 ~v~iw~ 660 (1135)
.|++||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-39 Score=362.61 Aligned_cols=295 Identities=17% Similarity=0.276 Sum_probs=263.3
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
...+++. |.+.|++++|+||++ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 3455666 999999999999997 789999999999999988776543 4568889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc---eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 122336678999999999999998 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEe
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|...|.+++++|..++.+|++|+.||+|++||+++++....+..|...|.+++|+|+++++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999999877799999999999999999999999999999999999999999999999985 78899999
Q ss_pred CCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 574 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
+++++.+..+..+. ...+.+++|+|+++++++++.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcC
Confidence 99988877776543 2268899999999999999999999999999999998887664 48999999999999999999
Q ss_pred CCcEEEEE
Q 001157 653 DNGIKILA 660 (1135)
Q Consensus 653 dg~v~iw~ 660 (1135)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=353.41 Aligned_cols=294 Identities=15% Similarity=0.251 Sum_probs=260.0
Q ss_pred CeeEEEecCCCCCeEEEEeccCC--CccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKE--SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
+.....+++|.+.|++++|+++. ++.+|++|+.|++|++||++.... ...+.+|...|.+++|++++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 34456678999999999998753 467999999999999999987654 3467889999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECC
Confidence 88899999999999999988776 788899999999999999999999999999999888876644 789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCccc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++++|++++.||.|++||+.++ +....+.
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~-~~~~~~~-------------------------------------------------- 203 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATG-KLLHTLE-------------------------------------------------- 203 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT-EEEEEEC--------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCC-cEEEEEc--------------------------------------------------
Confidence 9999999999999999998765 1111110
Q ss_pred CccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeec
Q 001157 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1135)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1135)
+ | ..+|.+++|+|++++|++++ |++|++||+.++++...+.+|.
T Consensus 204 --------------------------------~--h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 204 --------------------------------G--H-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp --------------------------------C--C-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred --------------------------------c--c-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 1 4 67788999999999999998 8999999999999999999999
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
..|.+++|+| ++.+|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus 249 ~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 249 SWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999963
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-38 Score=350.80 Aligned_cols=292 Identities=17% Similarity=0.306 Sum_probs=255.7
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..+++. |.+.|++++|||+|+ +|++|+.||+|+|||+.+++.+.. +..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 3455666 899999999999998 788999999999999998876543 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~ 495 (1135)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987665 7789999999999999999 8999999999999999987 55678899
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-CCCCeEEEEEEcC--CCCEEEEEeeCCCCCceEEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 572 (1135)
|...|.+++|+|. ++.+|++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999985 23799999999999999998877766554 4557899999987 7789999874 8899999
Q ss_pred eCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC--EEEEE
Q 001157 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 650 (1135)
|+++++++..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+. ..+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEe
Confidence 9999999999999987 89999999999999999999999999999999999998654 4789999999875 57777
Q ss_pred eCCCcEEEEECCC
Q 001157 651 TSDNGIKILANSD 663 (1135)
Q Consensus 651 ~~dg~v~iw~~~~ 663 (1135)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 655 567887754
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.1e-39 Score=367.87 Aligned_cols=286 Identities=20% Similarity=0.346 Sum_probs=262.2
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987765 7889999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++++.++.+|...|.+++|+|++ .+|++++.|++|++||++++.....+..|...|.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999999865 89999999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC--------------------CCEEEEEecCCeEEEEECCCCeee
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.+|++|+.|++|++||+.+++++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78899999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccc
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1135)
..+..|.. .|.+++|+|+|++|++++.|+.|++||+.++ +....+.+
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~------------------------------ 378 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNA------------------------------ 378 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEEC------------------------------
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcC------------------------------
Confidence 99987654 7999999999999999999999999998766 33333322
Q ss_pred cccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC
Q 001157 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 783 (1135)
|...|.+++|+|+
T Consensus 379 -------------------------------------------------------------------h~~~v~~l~~~~~ 391 (410)
T 1vyh_C 379 -------------------------------------------------------------------HEHFVTSLDFHKT 391 (410)
T ss_dssp -------------------------------------------------------------------CSSCEEEEEECSS
T ss_pred -------------------------------------------------------------------CCCcEEEEEEcCC
Confidence 5667999999999
Q ss_pred cceeeeecccceeEEEee
Q 001157 784 GLSLLALASNAVHKLWKW 801 (1135)
Q Consensus 784 g~~l~~~~~dg~i~iw~~ 801 (1135)
+.+|++++.||.|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999974
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-38 Score=351.29 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=259.2
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..+..++. |.+.|++++|+|++..+|++|+.|++|++|++.+...... .+...+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34566777 9999999999998755899999999999999875432110 11123678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ +.++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987655 7789999999999999999 89999999999999985 667888999
Q ss_pred CCCCeEEEEeccCC----CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 496 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~l~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.++++.|.. ++..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998853 3458999999999999999998888889999999999999999999999974 889999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC------CCCCcCeEEEecCCC
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 645 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~ 645 (1135)
||+.+++.+..+..+. .+.+++|+|++.++++++. +.+++|++..+..+..+..+. +...+.+++|+|||+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999888653 7999999999999988765 459999999888777765331 233578999999999
Q ss_pred EEEEEeCCCcEEEEECCCc
Q 001157 646 LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|++|+.||.|++||+.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.9e-39 Score=366.83 Aligned_cols=305 Identities=17% Similarity=0.284 Sum_probs=264.3
Q ss_pred CcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee
Q 001157 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+.. +..|...|.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~ 112 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVM 112 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCC
T ss_pred cceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEE
Confidence 34456677777 999999999999998 689999999999999998876543 567999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+++|+|+|++||+|+.|+.|++|++.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++
T Consensus 113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCC
T ss_pred EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCc
Confidence 999999999999999999999999976421 1122357799999999999998654 69999999999999999999
Q ss_pred eEEEe-----cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 489 KQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 489 ~~~~l-----~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
.+..+ .+|...|.++++++. ++.+|++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~- 269 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD- 269 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS-
T ss_pred EEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC-
Confidence 98887 679999999999764 348999999999999999984 4667788899999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccC------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC--CCCCCC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLPA 634 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~ 634 (1135)
|+.|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||+.+++.+..+.. ..+...
T Consensus 270 ---D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~ 346 (380)
T 3iz6_a 270 ---DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR 346 (380)
T ss_dssp ---SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred ---CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence 78899999999999888876532 1388999999999999999999999999999998887732 234558
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.+++|+|+|.+|++|+.|++|++|++...
T Consensus 347 v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 347 ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999999998765
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.8e-38 Score=351.34 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=228.1
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987665 6778999999999999999 899999999999999
Q ss_pred cCCC----eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~----~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+.++ +....+.+|...|.++.|+++ ..+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 456678899999999999875 359999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+........|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 74 78899999999999999999887 89999999999999999999999999999999888887655555789999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCc
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|+|+|++|++|+.|+.|++||+.++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998776
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=351.55 Aligned_cols=297 Identities=13% Similarity=0.122 Sum_probs=239.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccc-ccccccccccCCCeeEEEEcCCCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-PLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
|...|.+++|||||+ +|++++ |+++++||.... .|+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 456799999999998 677776 788888874321 111000000 00011123467889999999985 68
Q ss_pred EEEeCCCeEEEEEcCCCCceeee-eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~ 502 (1135)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeCCCCce
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
++|++++. .+|++++.|++|++||+++++....+. .+...+.+++|+|++ +++++++. ++.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99998754 589999999999999999988877664 345579999999965 56777763 78999999999999
Q ss_pred eEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEE
Q 001157 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~ 657 (1135)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++++. +.+| ...|.+++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999987 89999999998 578999999999999999987654 4444 55899999999886 677999999999
Q ss_pred EEECCCc
Q 001157 658 ILANSDG 664 (1135)
Q Consensus 658 iw~~~~~ 664 (1135)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-38 Score=357.59 Aligned_cols=293 Identities=13% Similarity=0.143 Sum_probs=239.5
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeC------CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 3788999999999998 7888887 6788999887765433211 1134688999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceee-eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h 496 (1135)
|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 677899999999998765432 224558999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEe
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+++++ .++++++.||+|++||+++++....+. .+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999998764 588999999999999999887765443 456689999999985 56667653 77899999
Q ss_pred CCCCceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEe
Q 001157 574 ESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 651 (1135)
+++++.+..+.+|.. .|.+++|+|++ ++|++++.|++|++||+.+++.+..+ . |...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~--H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S--HRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C--CSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C--CCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 3 345899999998 899999999
Q ss_pred CCCcEEEEECCCc
Q 001157 652 SDNGIKILANSDG 664 (1135)
Q Consensus 652 ~dg~v~iw~~~~~ 664 (1135)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-38 Score=350.86 Aligned_cols=304 Identities=16% Similarity=0.243 Sum_probs=250.2
Q ss_pred eeEEEEec-CCC-CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 337 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~l~-h~~-~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+++.++. |.+ .|++++|||+|+ +||+|+.|++|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 35667776 776 999999999998 789999999999999987753321 01246899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---eeEE
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 491 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~ 491 (1135)
+|+|+|++||+|+.|++|++|++.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23347889999999999999999 8999999999999999876 3466
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999999865 8999999999999999987653 4578889999999999999999999984 7889
Q ss_pred EEEeCCCC---------------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe----eeEEE---e
Q 001157 570 VEWNESEG---------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTV---D 627 (1135)
Q Consensus 570 ~~wd~~~~---------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~ 627 (1135)
++||.... +++..+.+.+...|.+++|+|++..|++++.|+.|++|+..... ....+ .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 99996321 23445666445589999999999999999999999999987542 11111 1
Q ss_pred CCCCCCCcCeEEEecCC-CEEEEEeCCCcEEEEECCCcch
Q 001157 628 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~~~ 666 (1135)
...|...|.+++|+|++ .+|++++.||+|++|++.+++.
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 22445689999999987 5999999999999999988743
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-38 Score=357.76 Aligned_cols=319 Identities=15% Similarity=0.188 Sum_probs=229.4
Q ss_pred CccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccc
Q 001157 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 815 (1135)
+.++...++.....|+++.... ..|...|.+++|||||++|++++.|. +++||-
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~-------------- 70 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG-------------- 70 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE--------------
T ss_pred ceEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC--------------
Confidence 3344445557778888763211 23888999999999999999998742 233331
Q ss_pred ccceeccCCCCCccccC-CCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEE----EeeCCCCCeeEEEEe
Q 001157 816 VAPQLWQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLAFH 890 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~-~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~s 890 (1135)
.+++|+..++...... .....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+
T Consensus 71 -~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 71 -SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp -EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEEC
T ss_pred -eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC
Confidence 1233444443322211 111226 788999999999988876669999999999876543 344799999999999
Q ss_pred CCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCC
Q 001157 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1135)
Q Consensus 891 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1135)
| ++++|++|+.|+.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++...... ...
T Consensus 149 p-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~ 224 (357)
T 4g56_B 149 S-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCA 224 (357)
T ss_dssp S-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTT
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---ecc
Confidence 9 899999999999999999999999999999999999999999985 78999999999999999877433211 112
Q ss_pred CCCCCCCceeEEECCCC-cEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEe
Q 001157 970 RQSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 970 ~~~~~~~v~~~~fspdg-~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg-~~l~s~~~dg~V~vwd 1045 (1135)
+. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++||+|+.||+|+|||
T Consensus 225 ~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 225 SD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp CC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 22 568999999985 56666 46899999999 66665554 4568999999999997 5799999999999999
Q ss_pred cCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1046 AETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++++.+..+ +|...|.+++|+|.++++|++++.||+|++|++.+..
T Consensus 299 ~~~~~~~~~~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 299 ADFSEVFRDL------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCcEeEEC------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999876543 6889999999999888999999999999999997644
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.1e-37 Score=339.37 Aligned_cols=254 Identities=18% Similarity=0.302 Sum_probs=229.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcC-CCCEEEEEee
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999865 8999999999999999987744 457788999999999999 6789999875
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC--CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|+.|++||++++.....+..++...+..+.|+| ++.+|++++.|++|++||+.+++++..+..|.. .|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEE
Confidence 888999999988877777766655789999987 678999999999999999999999999987754 799999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
|+|++++|++++.||+|++||..++ ++.+.+
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~ 266 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-ceeeec
Confidence 9999999999999999999999877 444443
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-37 Score=356.18 Aligned_cols=341 Identities=13% Similarity=0.165 Sum_probs=283.7
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc----CCCe------eEEEecC-----
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG----- 495 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~l~~----- 495 (1135)
.+.+|+++...... ....|.+.|++++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp --------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 35678876543322 34457799999999999985 6899999999999999 8888 4555544
Q ss_pred -----CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 496 -----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 496 -----h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
|...|.+++|+|++ .+|++++.||.|++|| .++.....+..|...|.+++|+|++++|++++. ++.|+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 174 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTI 174 (425)
T ss_dssp ------CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEE
T ss_pred ccccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEE
Confidence 68899999998855 8999999999999999 567777888889999999999999999999874 77899
Q ss_pred EEeCCCCceeEEeecccCCc---------------eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 571 EWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+||+.+++.+..+..+.. . +.+++|++++ .+++++.+|.|++||+.+++.+..+..+. ..|
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i 250 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPI 250 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS--SCE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC--Cce
Confidence 999999999998887765 4 8889999975 68889999999999999999988887664 479
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCC
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1135)
.+++|+|++++|++++.|+.|++||+.++ +....+
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~-------------------------------------------- 285 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCF-------------------------------------------- 285 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSB-SCSEEE--------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCC-ccceEe--------------------------------------------
Confidence 99999999999999999999999998655 110000
Q ss_pred CCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccce
Q 001157 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~ 795 (1135)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE
Q 001157 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM 874 (1135)
Q Consensus 796 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~ 874 (1135)
.. | ...|.+++|+|++ ++++++ |+.|++||+.+++.+
T Consensus 286 --------------------------------------~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 286 --------------------------------------YG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp --------------------------------------CC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred --------------------------------------cC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 00 4 6778899999999 888887 899999999999999
Q ss_pred EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce--------------------EeEeecCccC--ceEEEEE
Q 001157 875 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLAF 932 (1135)
Q Consensus 875 ~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~i~~l~~ 932 (1135)
..+..|...|++++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|
T Consensus 324 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp EEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred EecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 99999999999999999 89999999999999999999988 8999999977 9999999
Q ss_pred cCCCCeEEEEcCCCcEEEEeCC
Q 001157 933 SPTLNALVSSGADAQLCMWSID 954 (1135)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~ 954 (1135)
+|++++|++++.||.|++|+++
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999986
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=358.62 Aligned_cols=306 Identities=13% Similarity=0.205 Sum_probs=251.3
Q ss_pred EEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEc----CCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 340 ~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
+....|.+.|++++|+|+|+.+||+|+.||.|++|++ .+++.+.... ....+.. .........+|.+.|.+++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-IIAELRH--PFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-EEEEEEC--CCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-ccccccc--cccccccccCCCCceEEEE
Confidence 3444477999999999999746889999999999999 8776310000 0000000 0000001234788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444444 6778999999999999999 899999999999999999999999988
Q ss_pred CCCC---------------eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 496 HEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 496 h~~~---------------v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
+... +.+++|+++ ..+++++.||.|++||+.+.+....+..+...|.+++|+|+++++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8777 999999875 4799999999999999999988888999999999999999999999987
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
. ++.|++||+++++.+..+..|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .|.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEE
Confidence 4 77899999999999999988776 89999999999 999999999999999999999999887644 7999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 641 NKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 641 s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
+|++++|++++.||.|++|++.++.
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999998763
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=351.01 Aligned_cols=293 Identities=13% Similarity=0.154 Sum_probs=228.5
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCc-cccCCCCCCCCCCCeeEEEee
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-MTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~~v~~l~~s 849 (1135)
+...|.+++|+|||+.|++++ |+++++||... .+|+...... .........| ...|.+++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s 91 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQT-EAGVADLTWV 91 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEE-SSCEEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeecc-CCCEEEEEEe
Confidence 566799999999999777655 77888886421 1121111000 0000011114 6789999999
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCceEEEE----eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~~~~~----~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
||+. |++|+ ||+|+|||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.|++|++||+.+++++..+.+|.
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9965 55666 99999999998765433 458999999999999 89999999999999999999999999999999
Q ss_pred CceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC-cEEEEE-ECCcEEEEe
Q 001157 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYD 1001 (1135)
Q Consensus 925 ~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~i~vwd 1001 (1135)
+.|++++|+|++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|++ ++|+++ .|+.|++||
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999985 789999999999999998774332111 1111 468899999965 566764 689999999
Q ss_pred c-cCCcccccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1002 S-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1002 ~-~~~~~~~~~~~~~h~~~i~~~~~s~dg-~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
+ +++++..+ .+|...|++++|+||| ++|++|+.||+|+|||+.+++.+. + .+|...|.+++|+
T Consensus 244 ~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-----------~~H~~~V~~v~~s 308 (344)
T 4gqb_B 244 TKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-----------QAHRDFVRDATWS 308 (344)
T ss_dssp SCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-----------CCCSSCEEEEEEC
T ss_pred CCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-----------cCCCCCEEEEEEe
Confidence 9 66666655 4568999999999998 579999999999999999987543 2 3888999999999
Q ss_pred CCCCCEEEEEecCCcEEEEecCCC
Q 001157 1080 PSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
|++..+|++++.|++|++|++.+.
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCCeEEEEEcCCCeEEEEECCCC
Confidence 966678889999999999999764
No 31
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7e-37 Score=344.05 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=226.0
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999999887655 6677899999999999999 899999999999999
Q ss_pred cCCC------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC--CCCE
Q 001157 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 555 (1135)
Q Consensus 484 ~~~~------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 555 (1135)
+... .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 3456777899999999998865 7999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999875 78899999999999999999887 8999999999999999999999999999999888877765554568
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+++|+|++.+|++|+.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999999776
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-36 Score=335.75 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=257.5
Q ss_pred eEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+..++. |.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 4455555 899999999999998 788999999999999988876542 5689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC
Q 001157 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h 496 (1135)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+++++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987665 6789999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
..+|.+++|+|++ .++++++.||.|++||+++++....+. .+...+..++|+|+++++++++. ++.|++||++
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998865 899999999999999999888776654 45568999999999999999874 7889999999
Q ss_pred CCceeEEeecccCCc--eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe--
Q 001157 576 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 651 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-- 651 (1135)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998876522 23333446788999999999999999999999999887644 799999999999999987
Q ss_pred CCCcEEEEECC
Q 001157 652 SDNGIKILANS 662 (1135)
Q Consensus 652 ~dg~v~iw~~~ 662 (1135)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=347.11 Aligned_cols=307 Identities=14% Similarity=0.156 Sum_probs=242.7
Q ss_pred CCC-ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 771 AAS-KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 771 ~~~-~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
|.. .+..++|+|+|++|++++.|+.|++|++..... . .......+ | ...|.+++|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~------~--------------~~~~~~~~--h-~~~v~~~~~s 70 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW------I--------------CKSVLSEG--H-QRTVRKVAWS 70 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE------E--------------EEEEECSS--C-SSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc------e--------------eeeeeccc--c-CCcEEEEEEC
Confidence 665 899999999999999999999999998753211 0 00001123 7 8999999999
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCc--eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---eEeEeecCc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTF--KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGH 923 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h 923 (1135)
|+|++|++|+ |++|++||+.++ +++..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998876 56788999999999999999 8999999999999999999875 456778999
Q ss_pred cCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EECCcEEEEec
Q 001157 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1135)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~i~vwd~ 1002 (1135)
...|.+++|+|++++|++++.|++|++||+.+++.. +...+.+|. ..|.+++|+|+|++|++ +.|++|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 999999999999999999999999999999876522 334456666 68999999999999999 57999999997
Q ss_pred -cCCcccccC-------------CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCC
Q 001157 1003 -KLECSRSWS-------------PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 1003 -~~~~~~~~~-------------~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
......... ....|...|.+++|+|++..|++++.|+.|++|+...+....... .....+...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~~~ 301 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT--FSLTAHLHQA 301 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC--EEEEEEETTS
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee--EEEEeeeccc
Confidence 222111100 011368899999999999999999999999999998654221100 0011222358
Q ss_pred CCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001157 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1069 ~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~ 1109 (1135)
|...|.+++|+|+++.+||+|+.||+|++|++.+.++..+.
T Consensus 302 h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 302 HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 89999999999965679999999999999999987764443
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=368.25 Aligned_cols=295 Identities=14% Similarity=0.266 Sum_probs=249.5
Q ss_pred CCCeeEEEeecCCCeEEEEE----------eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~g----------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
...|.+++|||+|+.++++| +.|+.|+|||+.+++.... . ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34789999999997789999 8899999999998763211 0 0235889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEEcCCCe-----
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR----- 488 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~----- 488 (1135)
|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1133367789999999999998 66 89999999999999999886
Q ss_pred -eEE---EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC------CCeEEEEEEcCCC-CEEE
Q 001157 489 -KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TRLF 557 (1135)
Q Consensus 489 -~~~---~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~ 557 (1135)
... .+.+|...|.+++|+|++ +.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 346799999999999873 379999999999999999998888888776 7799999999998 5777
Q ss_pred EEeeCCCCCceEEEEeCCCC-ceeEEee-cccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+++.++ .++.|++||++++ ..+..+. +|.. .|.+++|+| ++++|++++.||.|++||+.+++.+..+..|.. .
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~ 307 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--W 307 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--C
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--c
Confidence 776421 1228999999986 6677777 7766 899999999 899999999999999999999999999987654 7
Q ss_pred cCeEEEecCC-CEEEEEeCCCcEEEEECCCc
Q 001157 635 SPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.+++|+|++ .+|++++.|+.|++|++.++
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 9999999999 89999999999999999876
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.3e-37 Score=348.99 Aligned_cols=309 Identities=15% Similarity=0.247 Sum_probs=252.0
Q ss_pred eEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
++...+.|.+.|++++|||||+ +||+|+ ++.++||++.+++.+.......-.. .............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 4556677999999999999998 678876 7899999999987654210000000 000000000111244469999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~ 497 (1135)
|||++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999886554 6789999999999999999 89999999999999999999888876 66
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..+.+++|+|. ++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 78999999873 3489999999999999999988776655 567889999999999999999974 88899
Q ss_pred EEeCCCC------------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeE
Q 001157 571 EWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 571 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|.. .|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEE
Confidence 9998753 34567778876 899999999999999999999999999999999999987754 79999
Q ss_pred EEec------CCCEEEEEeCCCcEEEEECCC
Q 001157 639 RFNK------EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 639 ~~s~------~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
+|++ ++.+|++|+.||+|++|++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9886 688999999999999999754
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-36 Score=334.30 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=220.7
Q ss_pred ccccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc--eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 67999999999999965 8999999999999999975432 123447889999999999999999 899999999999
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC------C
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------T 554 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 554 (1135)
+||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||++ +.....+..|...|.+++++|.+ .
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998865 899999999999999996 45677888899999999999854 4
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888874 78899999999999999999887 8999999999999999999999999999999999988764 36
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
|.+++|+|++.++++++.+ .+++|++..+
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 8999999999999988765 6999998776
No 37
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-37 Score=353.59 Aligned_cols=295 Identities=15% Similarity=0.197 Sum_probs=254.6
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred cCCCe-------eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-----cCCCCeEEEEEEcC
Q 001157 484 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~~~~~-------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~ 551 (1135)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.+++....+ ..|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 552 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 552 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+++++++++. |+.|++||++ .+..+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 7889999875 7889999998 5678888999887 8999999999999999999999999999999998888654
Q ss_pred CC-----CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcccc
Q 001157 630 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 630 ~~-----~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1135)
.. ...|.+++|+|+|++|++|+.||.|++||..++ +....+...
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~------------------------------ 339 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTL------------------------------ 339 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCS------------------------------
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecc------------------------------
Confidence 22 234889999999999999999999999998776 222222100
Q ss_pred ccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCc
Q 001157 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 784 (1135)
..+|...|.+++|+|+|
T Consensus 340 ---------------------------------------------------------------~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 340 ---------------------------------------------------------------QNSHEGRISCLGLSSDG 356 (380)
T ss_dssp ---------------------------------------------------------------CSSCCCCCCEEEECSSS
T ss_pred ---------------------------------------------------------------cCCCCCceEEEEECCCC
Confidence 01277789999999999
Q ss_pred ceeeeecccceeEEEeecc
Q 001157 785 LSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 785 ~~l~~~~~dg~i~iw~~~~ 803 (1135)
++|++++.|+.|++|++..
T Consensus 357 ~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SEEEEECTTSCEEEEECCS
T ss_pred CEEEEeeCCCCEEEEecCC
Confidence 9999999999999998753
No 38
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=6.9e-36 Score=385.73 Aligned_cols=555 Identities=12% Similarity=0.089 Sum_probs=397.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.+.+++|||+ + ||..+ ++.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~-~~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEE-CCcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 3 44444 3789999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEcCCCCceeeeeEeecCCCCe-------eEEEEecCCCceEEEEEcCC------CcEEEEEcC
Q 001157 425 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1135)
Q Consensus 425 ~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~ 485 (1135)
+++.+ ..|++|++.+++ .+ .+..|...+ .+++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 479999998875 22 566788888 9999999998 77887754 468888887
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc------------CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1135)
+++.. .+..+. ...++|+| | ++++++. +...++|..........+..+...+.+++|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77654 343332 34667876 4 7777753 345677754444555566888899999999988
Q ss_pred CEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC--
Q 001157 554 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 630 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 630 (1135)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++...+ +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 245566776542 34445555554 35667999999998887 58999999995443 33444321
Q ss_pred -------CCCCcCeEEEe-cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 631 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 631 -------~~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+...+.+++|+ |||+.|++++ ++.+++|+..++. .. .+..
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~-~~~~----------------------------- 334 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VL-KVPE----------------------------- 334 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EE-ECSC-----------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eE-EccC-----------------------------
Confidence 11258899999 9999999887 7899999887652 11 1110
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCC-ceEEEEEe
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVRLIYT 781 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s 781 (1135)
+.. .+..++|+
T Consensus 335 --------------------------------------------------------------------~~~~~~~~~~~s 346 (1045)
T 1k32_A 335 --------------------------------------------------------------------PLRIRYVRRGGD 346 (1045)
T ss_dssp --------------------------------------------------------------------CSCEEEEEECSS
T ss_pred --------------------------------------------------------------------CCcceEEeeeEc
Confidence 223 57789999
Q ss_pred CCcceeeeecccceeE-EEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-
Q 001157 782 NSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1135)
Q Consensus 782 ~~g~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s- 859 (1135)
||+.++.++.++.+. +|++. ++.... +.+ | ...+..++|||||++|++++
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEET
T ss_pred -CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEECC
Confidence 999998888776666 66543 222221 112 5 77899999999999999998
Q ss_pred CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc----------cEEEEEcccceEeEeecCccCceEE
Q 001157 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRITG 929 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~i~~ 929 (1135)
++.|++||+.+++....+.+|...+.+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 78999999999998888878999999999999 899888887644 89999999988 6778889889999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEE--EE-E-ECCcEEEEeccCC
Q 001157 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL--LV-V-HESQISVYDSKLE 1005 (1135)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l--~~-~-~d~~i~vwd~~~~ 1005 (1135)
++|+|||++|++++.++...+|+...... . ...+ ..+..+.+++++... +. . .+.....|++.+.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~-----~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 545 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNF-----S-FEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCE-----E-CCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred ceEcCCCCEEEEEecccCCcCcchhcccc-----c-cccC-----ceeEEEEeCCCCCCccccCcCccccccccccccCH
Confidence 99999999999999999899998764331 0 0011 234555666555433 22 1 1111224555332
Q ss_pred cccccCCCCCCCCCeEEEEEccCCCEEEE-------------EecCCcEEEEecCCCceeeccCCCcccCccccCCCCCC
Q 001157 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYA-------------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 1006 ~~~~~~~~~~h~~~i~~~~~s~dg~~l~s-------------~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
... ......|...+..++++|||+++++ ...+..|.+||+.+++... +. ..
T Consensus 546 ~~~-~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~--------------~~ 609 (1045)
T 1k32_A 546 YKR-SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK--------------NN 609 (1045)
T ss_dssp GGG-CEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE--------------EE
T ss_pred hHc-eEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee--------------cC
Confidence 111 1112234678999999999998875 1235578899998887432 21 34
Q ss_pred cEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+..++||| |+++|++++.| .|++||+.+++
T Consensus 610 v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 610 LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 66889999 88999988866 89999998766
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=338.24 Aligned_cols=297 Identities=15% Similarity=0.209 Sum_probs=233.8
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccc-c-ccCCCeeE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL-N-DAAISVNR 413 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~ 413 (1135)
.+++.++. |.+.|++++|+|+ +||+|+.|++|+|||+.++..... . .+ . +|...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~----------------~-~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI----------------D-VLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE----------------E-EECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE----------------E-EEecCCccCCEEE
Confidence 34566676 9999999999998 689999999999999987532110 0 12 2 49999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---
Q 001157 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1135)
Q Consensus 414 v~~spdg~~la~~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1135)
++|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred -CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC--CceEEecCCCCeEEEEEEcCC--CCEEEEEee
Q 001157 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGT 561 (1135)
Q Consensus 487 -~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~ 561 (1135)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... +....+.+|...|.+++|+|+ +.+|++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 35678899999999999999865 89999999999999998765 456788899999999999999 678888874
Q ss_pred CCCCCceEEEEeCCCC--------ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee--eEEEeCCCC
Q 001157 562 SKEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (1135)
|+.|++||+..+ .....+...+...|.+++|++++ +|++++.||.|++|+..+++. .... ...+
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 788999998754 34455555233489999999765 899999999999999988742 3222 2233
Q ss_pred CC-CcCeEEEec--CCCEEEEEeCCCcEEEEECCC
Q 001157 632 LP-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~-~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 689999999 789999999999999999864
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-36 Score=338.26 Aligned_cols=300 Identities=16% Similarity=0.285 Sum_probs=244.7
Q ss_pred eEEEEec-CCCCeeEEEe-----ec-CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCC
Q 001157 338 TVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 338 ~~~~~l~-h~~~V~~~~f-----sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+..++. |.+.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCc
Confidence 4556666 9999999999 77 887 8999999999999999865432110 0111236789999
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ...
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECK 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cce
Confidence 9999999999999999999999999999987665 7789999999999999999 899999999999999874 444
Q ss_pred EEec---CCCCCeEEEEeccCCC--------ccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 491 YTFE---GHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 491 ~~l~---~h~~~v~~l~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
..+. +|...|.+++|+|... +.++++++.||+|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 4443 7999999999988642 268999999999999994 455666788899999999999999999999
Q ss_pred eeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--EEeCC-------
Q 001157 560 GTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------- 629 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------- 629 (1135)
+. ++.|++||+.. ......+.. .. .|.+++|+|++.++++ +.|+.|++|++.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 74 88899999954 444444432 22 6999999999987765 468889999998876544 33311
Q ss_pred --CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 630 --GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 630 --~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457899999999999999999999999998765
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-35 Score=329.19 Aligned_cols=257 Identities=19% Similarity=0.321 Sum_probs=230.0
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.+|...|.+++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 367899999999999999999999999999999999887655 6789999999999999999 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
|+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..|...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 999999999999999999999998865 89999999999999999999988899999999999999999999999975
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEe-
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN- 641 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s- 641 (1135)
++.|++||+++++.+..+..+....+..++|+|+++++++++.|+.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 7789999999999888877666658999999999999999999999999999999999998877553333344454
Q ss_pred cCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 642 KEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
+++.+|++|+.||.|++||+.++ +....+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~ 275 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK-EIVQKL 275 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC-CEEEEE
T ss_pred CCCcEEEEECCCCEEEEEECCCc-hhhhhh
Confidence 67889999999999999999877 444443
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-38 Score=362.89 Aligned_cols=337 Identities=12% Similarity=0.134 Sum_probs=267.5
Q ss_pred CCCeeEEEEcCCCC-EEEEE----------eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 408 AISVNRCVWGPDGL-MLGVA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 408 ~~~V~~v~~spdg~-~la~~----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
...|.+++|+|+|+ +||+| +.|+.|++||+.+++.......+ .|...|.+++|+|+++ +|++|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccC
Confidence 34688999999997 99999 88999999999987643222233 5889999999999999 89999999
Q ss_pred CcEEEEEcCC----CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC------ceEE---ecCCCCe
Q 001157 477 KMIKVWDVVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVD---YDAPGNW 543 (1135)
Q Consensus 477 ~~i~iwd~~~----~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~---~~~~~~~ 543 (1135)
+.|++||+.+ .+.+..+.+|...|.+++|+|++ +.+|++++.||.|++||+.+.+ .... ...|...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999987 45888999999999999999862 3799999999999999998876 3332 2456677
Q ss_pred EEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 544 CTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
|.+++|+|+ +.++++++. ++.|++||+++++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888887 566666653 566777777776666555544320
Q ss_pred eEEEeCCCCCCCcCeEEEecCC-CEEEEEeCCC---cEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCC
Q 001157 623 LTTVDADGGLPASPRLRFNKEG-SLLAVTTSDN---GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1135)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------------------------- 256 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------------------------- 256 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------
Confidence 1113467888888886 5888888888 8999987654110000
Q ss_pred CCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEE
Q 001157 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEE
Q 001157 779 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMS 857 (1135)
Q Consensus 779 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~ 857 (1135)
+. ..| ...|.+++|+| ++++|++
T Consensus 257 ------------------------------------------------------~~-~~~-~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 257 ------------------------------------------------------LN-QGH-QKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp ------------------------------------------------------CC-SCC-SSCEEEEEECSSCSSCEEE
T ss_pred ------------------------------------------------------ee-cCc-cCceeEEEeCCCCCCeEEE
Confidence 00 015 77889999999 8999999
Q ss_pred Ee-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCC-cEEEEEeCCccEEEEEcccceEeEeec--------------
Q 001157 858 AS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNVRVDEVKTKLK-------------- 921 (1135)
Q Consensus 858 ~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~lasg~~dg~v~iwd~~~~~~~~~l~-------------- 921 (1135)
++ ||.|++||+.+++++..+.+|...|++++|+| ++ .+|++++.||.|++||+.+++......
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC---------------
T ss_pred EeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 98 89999999999999999999999999999999 66 899999999999999998765433221
Q ss_pred ---------------------CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 922 ---------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 922 ---------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
.|...+++++|+|||++|++++.|++|+||++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16778889999999999999999999999999873
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-35 Score=333.64 Aligned_cols=306 Identities=21% Similarity=0.286 Sum_probs=261.5
Q ss_pred CcceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee
Q 001157 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
....++..+|+ |.+.|++++|+|++..+|++|+.||+|+|||+.+++.... .....+.+|...|.
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVS 90 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEE
Confidence 34445677887 9999999999998545899999999999999987654321 11223678999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE-E
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 491 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~ 491 (1135)
+++|+|+|++|++|+.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... .
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEE
Confidence 99999999999999999999999999876544 5567888899999999999 7999999999999998766543 4
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+.+|...+..++|++.....++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~i 241 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAML 241 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEE
Confidence 5678999999999998887789999999999999999999999999999999999999999999999974 788999
Q ss_pred EeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC-------CCCCCCcCeEEEecCC
Q 001157 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-------DGGLPASPRLRFNKEG 644 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~ 644 (1135)
||+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|
T Consensus 242 wd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 242 WDLNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EETTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEeccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 9999999999888764 799999999875 55666799999999999888777653 2345679999999999
Q ss_pred CEEEEEeCCCcEEEEECCCcc
Q 001157 645 SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
++|++|+.||.|++||+.+|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999883
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.4e-36 Score=336.02 Aligned_cols=286 Identities=13% Similarity=0.165 Sum_probs=244.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.+.|.+++|||||+ +++++..++.+.+|......... ...+|.+.|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 456899999999998 66666666666666544332211 1346999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEee--cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe--eEEEecCCCCCe
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 500 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~h~~~v 500 (1135)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876554444444 7899999999999999 89999999999999999887 667788999999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++ .++++++.||.|++||+++++....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998855 89999999999999999999888889999999999999999999999874 788999999999988
Q ss_pred EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 87763 33 7999999999999999999999999999988754 34433 45799999999999999999999999999
Q ss_pred CCCc
Q 001157 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9876
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.7e-35 Score=329.25 Aligned_cols=319 Identities=13% Similarity=0.172 Sum_probs=270.4
Q ss_pred cCCcceeeecCCCCCCceeecCC--------cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccc
Q 001157 312 TGQSDEVSFAGVAHTPNVYSQDD--------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1135)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~d~--------~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~ 383 (1135)
.+++.+++++|||+.+++...+. ........+.|.+.|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 34688899999999876554322 2345566677999999999999998 688888 9999999998876443
Q ss_pred cccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec
Q 001157 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (1135)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 463 (1135)
.. ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 PV--------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp CS--------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred ee--------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 20 00012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCe
Q 001157 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1135)
Q Consensus 464 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 543 (1135)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++||+++++....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998865 899999999999999999887776654 5678
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++|++.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999874 778999999987754 5666665 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
..... ...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 66543 346899999999999999999999999986
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=356.15 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=214.2
Q ss_pred ceeEEEEecCCCCeeEEEeecCC-C-------eEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccccc
Q 001157 336 TKTVVRTLNQGSNVMSMDFHPQQ-Q-------TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 336 ~~~~~~~l~h~~~V~~~~fspdg-~-------~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
++....++.+.+.|++|+|+|++ . .+||+|+.++. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~---------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D---------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------
Confidence 45556677788999999999987 1 47888875431 0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceee-eeEeecCCCCeeEEEEecC------CCceEEEEEcCCCcEE
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d------~~~~~l~s~~~d~~i~ 480 (1135)
-..+|+++.+|+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +||+++.|++|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 01368999999999999999999988764321 2245678899999999997 45 899999999999
Q ss_pred EEEcCCCee-----------EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEE-
Q 001157 481 VWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM- 547 (1135)
Q Consensus 481 iwd~~~~~~-----------~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~- 547 (1135)
+||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 3478899999999999864 4899999999999999987643 45688899999999
Q ss_pred -EEcCCC-CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC-CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE
Q 001157 548 -AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 548 -~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+|+|++ .+|++++. |++|++||+++++.+..+.+|.. ..|.+++|+|+++.+++++.|++|++||++++.++.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 88999875 88999999999888877777654 247889999999999999999999999999998888
Q ss_pred EEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.+..|. ..|.+++|+|+|++|++|+.||+|++||+..
T Consensus 392 ~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 887664 4899999999999999999999999999743
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-36 Score=346.58 Aligned_cols=345 Identities=12% Similarity=0.107 Sum_probs=282.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 346689999999999999999999999998876544 34445 4455567899999 89999999999999999999
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 999989999999999998865 89999999999999999999999999999999999999999999999874 788
Q ss_pred EEEEeCCCCceeEEeeccc--CCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCE
Q 001157 569 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 646 (1135)
|++||+++++.+..+..+. ...+.++++.+.+...+ .. .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCE
Confidence 9999999999999988642 23688888876543220 01 11236888999999999
Q ss_pred EEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|++++.||.|++||+.++.. ...+
T Consensus 262 l~~~~~dg~i~i~d~~~~~~-~~~~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQ-TIQL------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCE-EEEE-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCce-eEEc-------------------------------------------------------
Confidence 99999999999999876511 0000
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
T Consensus 286 -------------------------------------------------------------------------------- 285 (420)
T 3vl1_A 286 -------------------------------------------------------------------------------- 285 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCC-EEEEEe-CCeEEEEeCCCceE-EEEeeC-CCC
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PPP 882 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~-~la~~s-dg~i~iwd~~~~~~-~~~~~~-~~~ 882 (1135)
.. .| ...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.+ |..
T Consensus 286 --------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 286 --------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp --------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred --------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 00 04 67788999999998 888888 89999999988643 666666 667
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc---------eEeEeecCccCceEEEEEcCCCC---eEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~i 950 (1135)
.|+++.+. ++.+|++++.||.|++|++.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+
T Consensus 337 ~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 337 PINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 78888664 5689999999999999998863 22334668889999999999999 7888888999999
Q ss_pred EeCCC
Q 001157 951 WSIDK 955 (1135)
Q Consensus 951 Wd~~~ 955 (1135)
|+++.
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99875
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=353.93 Aligned_cols=357 Identities=9% Similarity=0.093 Sum_probs=270.6
Q ss_pred cccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCC---CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 405 ~~h~~~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
.+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|++++|+|+++ +|++|+.|+.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 68999999999999 999999999999999999987 5433323233 5999999999999999 899999999999
Q ss_pred EEEcC---CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEE--EcCCCCE
Q 001157 481 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 555 (1135)
Q Consensus 481 iwd~~---~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 555 (1135)
+||+. +++.+..+.+| .+..+.+++.+ +...+.++. +++++++
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777777666 67777776632 122333444 6789999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeec--ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++|+.||.|++||+++++++..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999874 78899999999999999998 555 89999999999999999999999999999999998886322 23
Q ss_pred CcCeEEEe----cCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCC
Q 001157 634 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 634 ~v~~~~~s----~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1135)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++...
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~-------------------------------- 305 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ-------------------------------- 305 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSC--------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC--------------------------------
Confidence 78999665 46889999999999999999888 555555554322
Q ss_pred CCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeee
Q 001157 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 789 (1135)
+..+.|+|+++.+.
T Consensus 306 -----------------------------------------------------------------~~~~~~~~~~~~l~- 319 (437)
T 3gre_A 306 -----------------------------------------------------------------PSMEHFLPIEKGLE- 319 (437)
T ss_dssp -----------------------------------------------------------------CCGGGGSCBCSSGG-
T ss_pred -----------------------------------------------------------------Cccceecccccccc-
Confidence 12222344443220
Q ss_pred ecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeC
Q 001157 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1135)
Q Consensus 790 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~ 868 (1135)
+. .+.+..| ...|.+++|+ ++++|++|+ |+.|++||+
T Consensus 320 ---~~-------------------------------------~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 320 ---EL-------------------------------------NFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp ---GC-------------------------------------CCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred ---cc-------------------------------------eeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 00 0111225 7889999999 889999998 999999999
Q ss_pred CCceEEEEeeCCC---CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCC--CCeEEEEc
Q 001157 869 MTFKVMTMFMSPP---PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSSG 943 (1135)
Q Consensus 869 ~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~ 943 (1135)
.+++....+.+|. ..+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 9999999888864 3456667777 55555443 334445555667789999999999998 78999999
Q ss_pred CCCcEEEEe
Q 001157 944 ADAQLCMWS 952 (1135)
Q Consensus 944 ~D~~i~iWd 952 (1135)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.6e-36 Score=348.10 Aligned_cols=283 Identities=15% Similarity=0.158 Sum_probs=239.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 466899999998 578899999999999998776542 3334 4455668899999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.||.|++||+.+++... .+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876544 5678999999999999999 899999999999999999999999999999999999998
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEecC---CCCeEEE---------------------EEEcCCCCEEEEEeeCC
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTM---------------------MAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~---------------------~~~s~~~~~l~~~~~~~ 563 (1135)
++ .+|++++.||+|++||+++++....+.. +...+.+ ++|+|+++++++++.
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 65 8999999999999999999888777764 3334444 445789999999874
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCCee-eEEEeCCCCCCCcCeEEEe
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s 641 (1135)
++.|++||+++++.+..+...+...+.+++|+|+++ +|++++.||.|++||+.+++. +..+..+.. ..+.++. .
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~-~ 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNVY-F 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEEE-E
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEEE-e
Confidence 788999999999988888765555899999999998 999999999999999998754 667765322 3677775 4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001157 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++.+|++++.|+.|++|++.+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.2e-35 Score=326.82 Aligned_cols=205 Identities=18% Similarity=0.294 Sum_probs=177.7
Q ss_pred eeEeecCCCCeeEEEE-----ec-CCCceEEEEEcCCCcEEEEEcCC-------CeeEEEecCCCCCeEEEEeccCCCcc
Q 001157 446 HLEIDAHVGGVNDIAF-----AH-PNKQLCIVTCGDDKMIKVWDVVA-------GRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 446 ~~~~~~h~~~v~~l~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~l~~h~~~v~~l~~~~~~~~~ 512 (1135)
...+.+|.+.|++++| ++ |++ +|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++ .
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--C 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--T
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--C
Confidence 3478899999999999 76 888 899999999999999875 34567889999999999998865 8
Q ss_pred EEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee---cccCC
Q 001157 513 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFRKR 589 (1135)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~ 589 (1135)
++++++.|++|++||+++++....+..|...|.+++|+|++++|++++. ++.|++||+... ...... .|..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~~- 163 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA----EREIKLWNILGE-CKFSSAEKENHSD- 163 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET----TSCEEEEESSSC-EEEECCTTTSCSS-
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC----CCEEEEEeccCC-ceeeeecccCCCc-
Confidence 9999999999999999999999999999999999999999999999974 788999999843 333333 4444
Q ss_pred ceeEEEEeCCC----------CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 590 SLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 590 ~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
.|.+++|+|++ .++++++.|+.|++||. ..+....+..|. ..|.+++|+|+|++|++|+.||.|++|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 79999999987 78999999999999994 566677777664 479999999999999999999999999
Q ss_pred ECCC
Q 001157 660 ANSD 663 (1135)
Q Consensus 660 ~~~~ 663 (1135)
|+.+
T Consensus 241 d~~~ 244 (343)
T 2xzm_R 241 DILN 244 (343)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9843
No 51
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=324.44 Aligned_cols=305 Identities=15% Similarity=0.200 Sum_probs=232.0
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC--eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
+.+++..+.+|.. .|.+++|+|+ +|++++.|++|++||+..+ +.+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566788889887 8999999987 9999999999999999875 445555332245689999999999999999999
Q ss_pred CcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccc
Q 001157 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
++|++|+........ .
T Consensus 80 ~~v~iw~~~~~~~~~--~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADRT--F-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc--c--------------------------------------------------------------
Confidence 999999975330000 0
Q ss_pred ccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccc
Q 001157 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1135)
Q Consensus 734 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 813 (1135)
..+ . +..
T Consensus 96 -------------------------------------------------~~~-~--------~~~--------------- 102 (330)
T 2hes_X 96 -------------------------------------------------EMD-L--------LAI--------------- 102 (330)
T ss_dssp -------------------------------------------------CCE-E--------EEE---------------
T ss_pred -------------------------------------------------cce-e--------EEE---------------
Confidence 000 0 000
Q ss_pred ccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCC----ceEEEEeeCCCCCeeEEE
Q 001157 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFLA 888 (1135)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~ 888 (1135)
+.+ | ...|.+++|+|+|++|++|+ |++|++||+.. .+++..+.+|...|++++
T Consensus 103 -------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 103 -------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred -------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 111 6 78899999999999999998 89999999942 367788999999999999
Q ss_pred EeCCCCcEEEEEeCCccEEEEEcccc--eEeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccc---
Q 001157 889 FHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKS--- 961 (1135)
Q Consensus 889 ~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~--- 961 (1135)
|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.....
T Consensus 161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999 8999999999999999999876 678899999999999999999 67899999999999999976532111
Q ss_pred eeeecCCC-CCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCC---cccccCCCCCCCC-CeEEEEEcc--CCCEEEE
Q 001157 962 RFIQAPAG-RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE---CSRSWSPKDALPA-PISSAIYSC--DGLLVYA 1034 (1135)
Q Consensus 962 ~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~---~~~~~~~~~~h~~-~i~~~~~s~--dg~~l~s 1034 (1135)
.+.....+ |. ..|.+++|++++.++..+.|+.|++||.... ..... ..+|.. .|.+++|+| ++++|++
T Consensus 240 ~~~~~~~~~h~---~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 240 VCEAILPDVHK---RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEEECCSCCS---SCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEE
T ss_pred EEeeecccccc---cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEE
Confidence 12233333 44 6899999998774443478999999999432 12111 235566 899999999 7899999
Q ss_pred EecCCcEEEEecCC
Q 001157 1035 GFCDGAIGVFDAET 1048 (1135)
Q Consensus 1035 ~~~dg~V~vwd~~~ 1048 (1135)
|+.||+|++||+++
T Consensus 315 ~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 315 GGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTSEEEEEEC--
T ss_pred ecCCCcEEEEEecc
Confidence 99999999999875
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=356.19 Aligned_cols=224 Identities=7% Similarity=0.000 Sum_probs=170.5
Q ss_pred cCCCeeEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC
Q 001157 407 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 407 h~~~V~~v~~spdg---------~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~ 477 (1135)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999766420 01368888 899999999
Q ss_pred cEEEEEcCCCeeE----EEecCCCCCeEEEEeccC----CCccEEEEEEcCCeEEEEeCCCCCc-----------eEEec
Q 001157 478 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 538 (1135)
Q Consensus 478 ~i~iwd~~~~~~~----~~l~~h~~~v~~l~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~ 538 (1135)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 456778899999999997 3467999999999999999976542 23667
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-eeEEeecccCCceeEE--EEeCCC-CEEEEEecCCeEEE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~i 614 (1135)
.|...|++++|++++ .|++++. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888874 8899999999764 4556888877 89998 578887 89999999999999
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 99999887766665433235789999999999999999999999998765
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-34 Score=358.25 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=253.2
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+|++..+|++|+.||+|+||++.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344565 9999999999998766899999999999999986543211 0111367899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe---c
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 494 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l---~ 494 (1135)
|+|++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999986655 7789999999999999999 7999999999999997655433322 4
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|...|.+++|+|+.....+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6899999999999765578999999999999999999888899999999999999999999999984 788999999
Q ss_pred CCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC-----------------CCCcCe
Q 001157 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 637 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 637 (1135)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888776543 799999999998777765 56799999999998887753311 113578
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECC
Q 001157 638 LRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 638 ~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-34 Score=329.40 Aligned_cols=251 Identities=18% Similarity=0.304 Sum_probs=212.3
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC------------------CCeeEEEEecCCCc
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV------------------GGVNDIAFAHPNKQ 467 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~l~~s~d~~~ 467 (1135)
+|.+.|.|++|||||++||+|+ ++.+++|++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6889999999987655 333332 2499999999999
Q ss_pred eEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG--DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC--CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 89999999999999999999999999999999999998865 899999999999999999888776665 45679999
Q ss_pred EEcC-CCCEEEEEeeCCCCCceEEEEeCCCCceeEEe-------ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 548 AYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 548 ~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+|+| +++++++++. ++.|++||++++..+..+ .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999 8999999875 788999999999888777 45555 899999999999999999999999999976
Q ss_pred Ce------------eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 620 MN------------MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 620 ~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
.. +...+..| ...|.+++|+|++.+|++|+.|+.|++||..++ +.+..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~ 350 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 350 (393)
T ss_dssp -------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECC
Confidence 43 33445544 447999999999999999999999999999887 44444433
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-34 Score=330.55 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=246.9
Q ss_pred ceeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+......+. |.+.|++++|+|+|..+|++|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 345556666 89999999999999338999999999999999987654320 124699999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 44443333334568899999999999 8999999999999998 68888999
Q ss_pred cCCCCCeEEEEeccCCCcc-EEEEEEcCCeEEEEeCCC----CCceEEecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCc
Q 001157 494 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~-~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999999876 5 999999999999999987 3444444 5888999999999 9999999874 78
Q ss_pred eEEEEeCCCCceeEEeecccC----------------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 568 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.|++||+++++....+.+|.. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 899999999888777765431 13344666666666 677999999999999999999987655
Q ss_pred CCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
...+..++|+|++++|++++ |+.|++||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677889999999999997 89999999864
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-33 Score=330.12 Aligned_cols=316 Identities=20% Similarity=0.331 Sum_probs=274.7
Q ss_pred EeecCCCCe-eEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEE
Q 001157 448 EIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 448 ~~~~h~~~v-~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~w 526 (1135)
.+.+|.+.| .+ ++++++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ .++++++.||+|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEE
Confidence 577898875 55 445677 899999999999999999999999999999999999962 699999999999999
Q ss_pred eCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
|+.+++....+..|...|.+++|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++++ ++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999999999999999999999995 567888874 88899999999999999999877 8999988 78899999
Q ss_pred ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCC
Q 001157 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
+.||.|++||+.+++.+..+..+.. .|.+++| ++.++++++.|+.|++||+.++ +....+.+
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~------------- 317 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTG------------- 317 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECC-------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcC-------------
Confidence 9999999999999999999886643 7888888 7899999999999999998766 21111110
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEc
Q 001157 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
| ...+.++
T Consensus 318 -----------------------------------------------------------------------~-~~~v~~~ 325 (445)
T 2ovr_B 318 -----------------------------------------------------------------------H-QSLTSGM 325 (445)
T ss_dssp -----------------------------------------------------------------------C-CSCEEEE
T ss_pred -----------------------------------------------------------------------C-cccEEEE
Confidence 3 4455555
Q ss_pred EeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeC---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee--
Q 001157 847 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-- 920 (1135)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-- 920 (1135)
.+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ .+|++|+.||.|++||+.+++.+..+
T Consensus 326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 55 567888888 89999999999999999986 788999999964 69999999999999999999998888
Q ss_pred ---cCccCceEEEEEcCCCCeEEEEcCCCc----EEEEeCCC
Q 001157 921 ---KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 955 (1135)
Q Consensus 921 ---~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iWd~~~ 955 (1135)
.+|.+.|++++|+|++.++++++.||+ |.+||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 578899999999999999999999998 99999985
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-33 Score=328.59 Aligned_cols=319 Identities=18% Similarity=0.302 Sum_probs=274.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887643 355579999999999999999999987665 778999999999998 45 799999999999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+.+|...|.++++++ ..+++++.||+|++||+.+++....+..|...|.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999953 68999999999999999999999999999999999999 7888998874
Q ss_pred CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
++.|++||+++++.+..+.+|.. .+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 78899999999999999998877 8999988 789999999999999999999999998876643 5565555 5
Q ss_pred CCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccC
Q 001157 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
+.++++++.||.|++||+.++ +....+..+
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------------------------------------------- 358 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------------------------------------------- 358 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECST-------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEccC-------------------------------------------------
Confidence 779999999999999998766 222211110
Q ss_pred ccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecc
Q 001157 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 803 (1135)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe-----
Q 001157 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF----- 877 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~----- 877 (1135)
..| ...|.+++|+ ++++++++ ||.|++||+.+++.+..+
T Consensus 359 --------------------------------~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 359 --------------------------------NKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp --------------------------------TSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred --------------------------------CCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 004 6678888884 68899998 899999999999998888
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCcc----EEEEEccc
Q 001157 878 MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 913 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~~lasg~~dg~----v~iwd~~~ 913 (1135)
.+|.+.|.+++|+| ++.++|+|+.||+ |.+||+..
T Consensus 404 ~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46788999999999 8999999999998 99999874
No 58
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.7e-33 Score=363.49 Aligned_cols=532 Identities=11% Similarity=0.010 Sum_probs=377.5
Q ss_pred eeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeC------CCcEEEEEcCCccccccccceeecccccccccccc
Q 001157 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+|.++...++..+...|...|.+++|||||++ ||+++. +..|++|++.+++...
T Consensus 35 l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~~------------------- 94 (1045)
T 1k32_A 35 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIKR------------------- 94 (1045)
T ss_dssp EEEEETTTCCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEEE-------------------
T ss_pred EEEEECCCCcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeEE-------------------
Confidence 45555555666666669999999999999995 554433 2479999998876321
Q ss_pred cccccCCCe-------eEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceE
Q 001157 403 LLNDAAISV-------NRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 403 ~~~~h~~~V-------~~v~~spdg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~ 469 (1135)
+..|...+ .+++|||||+.+++++.+ ..|.+|++.+++.. .+..+ ....++|+| | +
T Consensus 95 -lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~ 163 (1045)
T 1k32_A 95 -ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---R 163 (1045)
T ss_dssp -CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---E
T ss_pred -cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---E
Confidence 55677777 999999999977777654 46888888776432 22222 345678999 6 4
Q ss_pred EEEEcC------------CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEE
Q 001157 470 IVTCGD------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVD 536 (1135)
Q Consensus 470 l~s~~~------------d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~ 536 (1135)
+++++. +...++|....+.....+.+|...+.++.|+++ .++++++.|+.+++|.++. +.....
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceE
Confidence 666642 345677754443455667899999999999764 5777888899999998764 334444
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc----------CCceeEEEEe-CCCCEEEE
Q 001157 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFD-TTRNRFLA 605 (1135)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~s-~~~~~l~~ 605 (1135)
+..+. .+...+|+|||++++.+. ++.|++||+.... +..+..+. ...+..++|+ |+|+++++
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 44444 456779999999998874 6789999995443 33554421 1258889999 99999998
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCCCCC-CcCeEEEecCCCEEEEEeCCCcEE-EEECCCcchheeeccCcccccCCCCC
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK-ILANSDGVRLLRMLEGRAMDKNRCPS 683 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~-iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1135)
++ ++.|++|++.+++... +.. +.. .+..++|+ ||+.|+.++.++.+. +|+..++ ... .+.
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-~~~-~l~----------- 375 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-KAE-KFE----------- 375 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-CEE-ECC-----------
T ss_pred EE-cCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-Cce-Eec-----------
Confidence 87 8899999998876543 322 223 57889999 999999998888888 8887655 111 110
Q ss_pred CCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeE
Q 001157 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1135)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 763 (1135)
T Consensus 376 -------------------------------------------------------------------------------- 375 (1045)
T 1k32_A 376 -------------------------------------------------------------------------------- 375 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCe
Q 001157 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1135)
Q Consensus 764 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v 843 (1135)
.+...+..++|+|||+.|++++.++.+++||+. ++..... ..+ | ...+
T Consensus 376 ------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~----------------------tg~~~~~-~~~--~-~~~v 423 (1045)
T 1k32_A 376 ------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----------------------TGKPTVI-ERS--R-EAMI 423 (1045)
T ss_dssp ------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT----------------------TCCEEEE-EEC--S-SSCC
T ss_pred ------CCccceeeeEECCCCCEEEEECCCCeEEEEECC----------------------CCceEEe-ccC--C-CCCc
Confidence 134567889999999999999999999999764 2322211 112 5 7778
Q ss_pred eEEEeecCCCEEEEEe-CC----------eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc
Q 001157 844 ACIALSKNDSYVMSAS-GG----------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s-dg----------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 912 (1135)
.+++|||||++|++++ ++ .|++||+.+++ ...+..|...+.+++|+| +|++|++++.++...+|+..
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSS
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchh
Confidence 8999999999998886 44 89999999887 677778888899999999 89999999999999999876
Q ss_pred cceEeEeecCccCceEEEEEcCCCCeE--EEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEE
Q 001157 913 VDEVKTKLKGHQNRITGLAFSPTLNAL--VSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1135)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l--~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1135)
..... ..+...+..+.+++++... +... .+.....|+++.... .+..+..+. ..+..++|+|||+++
T Consensus 502 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----~~~~l~~~~---~~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 502 VLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK----RSSPINVDP---GDYRMIIPLESSILI 571 (1045)
T ss_dssp SSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG----GCEECSCCC---BCEEEEEECSSEEEE
T ss_pred ccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH----ceEEcCCCC---CChhheEEcCCCeEE
Confidence 54332 2244556777777766543 2222 222223466554211 111122222 567899999999877
Q ss_pred EE------------E--ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 990 LV------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 990 ~~------------~--~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
++ + ....|.+||+.......+. ..+.+++|||||++|++++.+ .|++||+.+++
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 1 2346888888444444332 568899999999999998866 89999999887
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-34 Score=333.79 Aligned_cols=292 Identities=12% Similarity=0.170 Sum_probs=225.7
Q ss_pred ecCCCCCCceeecCCcceeEEEEe-c-CCCCeeEEEeec-CCCeEEEEEeCCCcEEEEEcCC---ccccccccceeeccc
Q 001157 320 FAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDIS 393 (1135)
Q Consensus 320 ~~~~~~~~~~~~~d~~~~~~~~~l-~-h~~~V~~~~fsp-dg~~lla~gs~dg~v~iwd~~~---~~~~~~~~~~~~~~~ 393 (1135)
|++++..++....-...++++..+ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 455666555443333567788888 5 789999999999 997 789999999999999976 331110
Q ss_pred ccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC---CCCceeeeeEeecCCCCeeEEEEecCCCceEE
Q 001157 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1135)
Q Consensus 394 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~---~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1135)
....+|.+.|.+++|+|++++|++|+.||.|++||+. +++... .+.+| .|..+.|++++
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~----- 166 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG----- 166 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS-----
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc-----
Confidence 0012599999999999999999999999999999995 444333 33334 56677776643
Q ss_pred EEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC--CCCeEEEEE
Q 001157 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMA 548 (1135)
Q Consensus 471 ~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~ 548 (1135)
+...+.++.+...+++.++++++.||.|++||+++++....+.. |...|.+++
T Consensus 167 -------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 167 -------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp -------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred -------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 33344455544445568999999999999999999998888887 788999999
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee-cccCCceeEEEEe----CCCCEEEEEecCCeEEEEECCCCeee
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFD----TTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
|+|++++|++++. ++.|++||+++++.+..+. .|.. .|.+++|+ +++.+|++++.||.|++||+.+++.+
T Consensus 222 ~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 222 IDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp ECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 9999999999975 7889999999999999887 4444 89999665 46779999999999999999999999
Q ss_pred EEEeCCC------------------------CCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeec
Q 001157 624 TTVDADG------------------------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 624 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 671 (1135)
..+..+. +...|.+++|+ ++++|++++.|+.|++||+.++ +....+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~ 366 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAV 366 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG-GGCEEE
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc-ccceEE
Confidence 8887553 23347777787 6677888888888888887776 434333
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-33 Score=330.35 Aligned_cols=320 Identities=19% Similarity=0.303 Sum_probs=273.1
Q ss_pred ccccCCCe-eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 404 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V-~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+.+|...| .|+.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|++++|++++ ++++|+.|++|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 56788885 56555 67899999999999999999987655 778999999999999887 58999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-----------------------eEEecC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDA 539 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------------------~~~~~~ 539 (1135)
|+.+++.+..+.+|...|.+++|++.+++.++++++.||+|++||+.+... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999877779999999999999999987653 335566
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 77777776 678899999974 77899999999999999999877 899999999999999999999999999999
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
++++..+..|.. .|.+++|+ +.+|++++.||.|++||+.++....
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~------------------------------- 386 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------------------------------- 386 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-------------------------------
Confidence 999999987644 78889887 6799999999999999986541000
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
.
T Consensus 387 -------------------------------------------------------------------------------~ 387 (464)
T 3v7d_B 387 -------------------------------------------------------------------------------S 387 (464)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe
Q 001157 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1135)
Q Consensus 780 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s 859 (1135)
+. | ...+..++|+++++++++++
T Consensus 388 ~~--------------------------------------------------------~-~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 388 YH--------------------------------------------------------H-TNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp EE--------------------------------------------------------C-TTCCCEEEEEECSSEEEEEE
T ss_pred ec--------------------------------------------------------C-CCCccEEEEEeCCCEEEEec
Confidence 00 2 44566788999999999999
Q ss_pred CCeEEEEeCCCceEEEE-eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEc
Q 001157 860 GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 911 (1135)
||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 99999999999999886 66788999999997 4577777788887766543
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-33 Score=314.04 Aligned_cols=294 Identities=19% Similarity=0.314 Sum_probs=243.4
Q ss_pred eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe-----eEEEecCCCCCeEEEEeccCCCccEEEEEE
Q 001157 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 444 ~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s 518 (1135)
....+|.||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|...|.+++|+|++ .+|++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~~ 105 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSGS 105 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEEc
Confidence 334478999999999999998533 89999999999999987643 567889999999999998865 8999999
Q ss_pred cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE-eecccCCceeEEEEe
Q 001157 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFD 597 (1135)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~s 597 (1135)
.|+.|++|+............+...+..+.++++++++++++. ++.+++||......... ..+|.. .+..++|+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEEC
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEc
Confidence 9999999999998888888888889999999999999999874 77899999887655443 344444 89999998
Q ss_pred CCC--CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcc
Q 001157 598 TTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 598 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 675 (1135)
+++ .++++++.|+.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.|+.|++||+.+. +.+..+.
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~--- 254 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLD--- 254 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEE---
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeec---
Confidence 875 5788899999999999999999998887644 7999999999999999999999999998765 1111000
Q ss_pred cccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcc
Q 001157 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1135)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 755 (1135)
T Consensus 255 -------------------------------------------------------------------------------- 254 (340)
T 4aow_A 255 -------------------------------------------------------------------------------- 254 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCC
Q 001157 756 SDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1135)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1135)
T Consensus 255 -------------------------------------------------------------------------------- 254 (340)
T 4aow_A 255 -------------------------------------------------------------------------------- 254 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEee---------CCCCCeeEEEEeCCCCcEEEEEeCCccE
Q 001157 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM---------SPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1135)
Q Consensus 836 ~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~sp~~~~~lasg~~dg~v 906 (1135)
+ ...+.+++|+|++.+++++.|+.|++||+.++..+..+. +|...|++++|+| ++++||+|+.||.|
T Consensus 255 --~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 255 --G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLV 330 (340)
T ss_dssp --C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence 1 345667777777777766668888888887776665543 5788999999999 89999999999999
Q ss_pred EEEEcccce
Q 001157 907 QIYNVRVDE 915 (1135)
Q Consensus 907 ~iwd~~~~~ 915 (1135)
+|||+.+|+
T Consensus 331 ~iW~~~tGt 339 (340)
T 4aow_A 331 RVWQVTIGT 339 (340)
T ss_dssp EEEEEEC--
T ss_pred EEEeCCCcC
Confidence 999999885
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=319.75 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=256.0
Q ss_pred EEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCC
Q 001157 341 RTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 341 ~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg 420 (1135)
....|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCCC
Confidence 3334999999999999998 788999999999999998876653 66899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCCCe-------
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------- 488 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~------- 488 (1135)
++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+..+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 999999999999999999987665 444 888999999999999 89999988 999999998653
Q ss_pred ----eEEEecCCCC--CeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 489 ----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 489 ----~~~~l~~h~~--~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
.+..+..|.. .+.+++|+|++ .+|++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence 3445566766 99999998865 8999999999999999998 6667788889999999999999999999874
Q ss_pred CCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC--------------eEEEEECCCCeeeEEEe
Q 001157 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~ 627 (1135)
++.|++||+++++.+..+.. .. .+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 239 ----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 239 ----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp ----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred ----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 78899999999999988883 33 799999999999999999888 89999999999999998
Q ss_pred CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 628 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 313 ~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 313 GHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 7744 7999999999999999999999999999876
No 63
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.4e-34 Score=328.66 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=253.9
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEe
Confidence 344555 899999999999 4 7889999999999999987621110 0011256899999999999
Q ss_pred CC----C---CEEEEEeCCCeEEEEEcCCCCc-----eeeeeEeecC-----CCCeeEEEEe----cCCCceE-EEEEcC
Q 001157 418 PD----G---LMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGD 475 (1135)
Q Consensus 418 pd----g---~~la~~~~dg~i~iwd~~~~~~-----~~~~~~~~~h-----~~~v~~l~~s----~d~~~~~-l~s~~~ 475 (1135)
|+ | ++|++++.||.|++||+.+++. +. .+..| ...|.+++|+ |+++ + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998875 44 66677 5899999999 9999 8 999999
Q ss_pred CCcEEEEEcCC------CeeEE-----Ee-------cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 476 DKMIKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 476 d~~i~iwd~~~------~~~~~-----~l-------~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
|+.|++||+.+ ++.+. .+ ..|...|.+++|+|+ + ++++++.||.|++||+++.+....+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 76666 77 448999999999874 4 9999999999999999998888888
Q ss_pred cC---C---CCeEEEEEEcCCCCEEEEEeeCCCCC---ceEEEEeCCCCceeEEeec-------------ccCCceeEEE
Q 001157 538 DA---P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQ 595 (1135)
Q Consensus 538 ~~---~---~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~ 595 (1135)
.. | ...|.+++|+|++++|++++. + +.|++||+++++.+..+.+ |.. .|.+++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred eccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 88 8 889999999999999999875 5 7899999999999999988 666 899999
Q ss_pred EeCCCCEEEEEecCCeEEEEECCCCeeeEEEe------CC-------------CCCCCcCeEEEecCC----------CE
Q 001157 596 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SL 646 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~ 646 (1135)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 014579999999998 79
Q ss_pred EEEEeCCCcEEEEECCCc
Q 001157 647 LAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 647 l~~~~~dg~v~iw~~~~~ 664 (1135)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=310.50 Aligned_cols=288 Identities=16% Similarity=0.260 Sum_probs=252.1
Q ss_pred eeEEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~ 66 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC 66 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence 46677777 9999999999 9997 688999999999999988765542 557899999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
|+|++++|++++.||.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+..
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~ 140 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA 140 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence 9999999999999999999999876554445578899999999999 466 799999999999999 7888889999
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
|...+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+
T Consensus 141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~ 212 (313)
T 3odt_A 141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM 212 (313)
T ss_dssp CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence 9999999999873 238999999999999999 3455556666 888999999999998 777763 788999999
Q ss_pred CCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
++++.+..+.+|.. .|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||
T Consensus 213 ~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 213 HTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTS
T ss_pred CchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCC
Confidence 99999999998877 89999999999 688999999999999999999999987744 799999999998 56789999
Q ss_pred cEEEEECCCc
Q 001157 655 GIKILANSDG 664 (1135)
Q Consensus 655 ~v~iw~~~~~ 664 (1135)
.|++|++.++
T Consensus 288 ~i~iw~~~~~ 297 (313)
T 3odt_A 288 LVRIFSQEKS 297 (313)
T ss_dssp CEEEEESCGG
T ss_pred cEEEEeCCCC
Confidence 9999999887
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-32 Score=323.58 Aligned_cols=282 Identities=16% Similarity=0.259 Sum_probs=245.6
Q ss_pred EEEec-CCCC-eeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 340 VRTLN-QGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~l~-h~~~-V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
...+. |.+. ++++.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~ 171 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYA 171 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEc
Confidence 34454 7666 466666 455 789999999999999999886653 67899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCee------
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~------ 489 (1135)
|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp STT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccc
Confidence 998 99999999999999999987655 7789999999999995 556 899999999999999987652
Q ss_pred -----------------EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCC
Q 001157 490 -----------------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 490 -----------------~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1135)
+..+.+|...|.++.. + +.++++++.||.|++||+.+++....+..|...|.+++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEcC--C--CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 5567889999998853 3 389999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC
Q 001157 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
++++++++. ++.|++||+++++.+..+.+|.. .|.+++|+ ++++++++.||.|++||+.+++........
T Consensus 322 ~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--- 391 (464)
T 3v7d_B 322 RKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT--- 391 (464)
T ss_dssp TTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---
T ss_pred CCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---
Confidence 999999974 78899999999999999999887 89999997 589999999999999999998877666432
Q ss_pred CCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
..+..++|++++.++++++ ||.|++||+.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3578899999999999998 899999999888
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-33 Score=322.68 Aligned_cols=315 Identities=15% Similarity=0.211 Sum_probs=254.1
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCC-CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 648 (1135)
+|++........+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 344556677778888877 89999999999 999999999999999999999888887655667899999999 789999
Q ss_pred EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccC
Q 001157 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999998632 1110000
Q ss_pred CCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCC
Q 001157 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 808 (1135)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEE
Q 001157 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 887 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l 887 (1135)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.++
T Consensus 159 ------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 159 ------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp ------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred ------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 0 003 57789999999999999998 899999999 578889999999999999
Q ss_pred EEeCCCCc-EEEEEeCCccEEEEEccc----ceEeEeecCccCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccc
Q 001157 888 AFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 888 ~~sp~~~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1135)
+|+| ++. +|++|+.|+.|++||+.+ ++++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 676 999999999999999998 6666666 6999999999999 999999999999999999998775432
Q ss_pred eeeecC--CCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001157 962 RFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1135)
Q Consensus 962 ~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg 1039 (1135)
...... ..+. ..+. +.|+|++ .+..++|+|||++ +++.||
T Consensus 289 ~~~~~~~~~~~~---~~~~-~~~~p~~--------------------------------~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 289 IIIHPHRQFQHL---TPIK-ATWHPMY--------------------------------DLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEECCBCCCTTS---CCCC-CEECSSS--------------------------------SEEEEECBCCTTT--CTTCCC
T ss_pred cccccccccccc---cceE-EeccCCC--------------------------------CceEEEecCCccc--ccCCCC
Confidence 221110 1111 1222 3555443 4556788999998 889999
Q ss_pred cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1040 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.|++||+.+++.+..+..+ .|...+..++|+| ++++|++|+ |+.|++||+.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~---------~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDP---------NAAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBT---------TBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCC---------CCCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 9999999999998877521 3556677779999 889999997 99999999975
No 67
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.8e-34 Score=323.42 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=249.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc--ccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
|.++|++++|+|+|+ +|++|+.|+.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999998 78899999999999998875 3332 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee---E-EEecCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---Q-YTFEGHEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~l~~h~~ 498 (1135)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998876432 224567999999999999999 899999999999999998763 2 33467899
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCC------------------CCCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .+|++++.||.|++||++ .+.....+..|...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999998865 899999999999999954 5566777888899999999999999999987
Q ss_pred eCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC--Ceee---------------
Q 001157 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 623 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 623 (1135)
. ++.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 4 78899999999999999998876 89999999999888777 899999999987 4210
Q ss_pred -----------------------EEEeCCCCCCCcCeEEEe-cCC---CEEEEEeCCCcEEEEECCCcchheee
Q 001157 624 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 624 -----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++.++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~~ 368 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 368 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhhh
Confidence 1111 2445689999976 576 99999999999999999887555543
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.6e-34 Score=325.39 Aligned_cols=290 Identities=17% Similarity=0.274 Sum_probs=244.9
Q ss_pred CCCCeeEEEeecC---CCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC--
Q 001157 345 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~~~fspd---g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCCC
Confidence 8999999999984 444566666678999999998776532 1 11112247788999999999
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcCCCeeEEEe---
Q 001157 420 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 420 --g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--- 493 (1135)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987665 6778999999999999 787 8999999999999999999999988
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE----------------------------ecCCCCeEE
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----------------------------YDAPGNWCT 545 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----------------------------~~~~~~~v~ 545 (1135)
.+|...|.+++|+|++ .+|++++.||.|++||+++.+.... ...+...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999998855 8999999999999999987654332 223788999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--------------eEEeecccCCceeEEEEeCC--CCEEEEEecC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--------------KRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 609 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d 609 (1135)
+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778888864 78899999987644 777787776 7999999999 9999999999
Q ss_pred CeEEEEECCCCee----eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 610 FQIKFWDMDNMNM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 610 g~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
|.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999998763 4466666545689999999999999999999999999975
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-34 Score=332.88 Aligned_cols=292 Identities=16% Similarity=0.213 Sum_probs=234.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l 423 (1135)
|...|+|++|+|.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++++|+| ++++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCEE
Confidence 7789999999996555899999999999999987764321 01468999999999998 78999
Q ss_pred EEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 a~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999999999999998753 222222233455688999999999 89999999999999975 56678899999999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceE---EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
+|+|.++ .++++++.|++|++||+++..... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9998764 589999999999999998766543 33567889999999999999999985 788999999999888
Q ss_pred EEeecccCC-----ceeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeCCCCCCCcCeE-EEec
Q 001157 581 RTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL-RFNK 642 (1135)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~ 642 (1135)
..+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEECC
Confidence 777665421 123356777777666654 3467999999999998887543 23467776 6999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+|.+|++|+ |+.|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 789999999887
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=320.44 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=241.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeC---CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC--
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCCC
Confidence 89999999999999878888887 99999999998765432 12368999999999999
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCC-ceeeeeEeecCCCCeeEEE------EecCCCceEEEEEcCCCcEEEEEcCCCe-eE
Q 001157 420 -GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIA------FAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ 490 (1135)
Q Consensus 420 -g~~la~~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~------~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~ 490 (1135)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999887 444 6779999999995 467888 89999999999999999887 77
Q ss_pred EEecCCCC----CeEEEE----eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcC---CCCEEEEE
Q 001157 491 YTFEGHEA----PVYSVC----PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRLFSC 559 (1135)
Q Consensus 491 ~~l~~h~~----~v~~l~----~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~ 559 (1135)
..+..|.+ .+.+++ |++ ++.++++++.||.|++||+++.+... ...+...|.+++|+| ++++++++
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred eeccccCCCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 88876655 899998 444 44899999999999999999877644 355778999999999 99999998
Q ss_pred eeCCCCCceEEEEeCCCCceeEEee-----cccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC-------------
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM------------- 620 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~------------- 620 (1135)
+. ++.|++||+++++....+. +|.. .|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 231 ~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 231 SL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp ES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred CC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 74 7889999998877665554 7666 899999999998 8999999999999998754
Q ss_pred ------eeeEEEeCCCCCCCcCeEEEecCCCEEE-EEeCCCcEEEEECCCc
Q 001157 621 ------NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~~ 664 (1135)
+.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 306 ~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 345556655 44899999999999998 7999999999999765
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.4e-33 Score=318.21 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=232.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCC-------cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVG-------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
-+.+|+|++|+|||+ +|++|+.|. .|+||++..+.......+. ......+.+|...|.++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~- 81 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDA- 81 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEE-
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEe-
Confidence 356899999999997 788886433 5999999876543211110 1111236778889998876
Q ss_pred CCCCEEEEE-----------eCCCeEEEEEcCCCCceee-ee-----EeecCCCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001157 418 PDGLMLGVA-----------FSKHIVHLYTYNPTGELRQ-HL-----EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 418 pdg~~la~~-----------~~dg~i~iwd~~~~~~~~~-~~-----~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+++.+++| +.|+.+++|++.+...... .. ....+...+.+++|||||+.+.+++++.|++|+
T Consensus 82 -~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 82 -SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp -ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred -CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 45566665 3577899999887643221 11 112345568999999999954455667899999
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCEEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|||+.+++++..+. |...|.+++|+|++ +++++++.+ .+++|+..++..... ...+...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 99999999999886 88899999998865 899988855 566666666666543 3456778999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCce----eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEE-eCCCCCC
Q 001157 559 CGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP 633 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 633 (1135)
++.++.....+++|++..+.. ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ .+| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987655555788999876653 345666666 8999999999999999999999999999999998876 455 44
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.|++++|+|||++||+++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999755
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=309.85 Aligned_cols=303 Identities=14% Similarity=0.161 Sum_probs=249.7
Q ss_pred ccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001157 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3478999999999999999999999999999999999987665 7789999999999999999 8999999999999
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCc-----------eEEecCCCC--e
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--W 543 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~-----------~~~~~~~~~--~ 543 (1135)
||+.+++.+..+. +...|.+++|+|++ .++++++.+ +.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999887 89999999998865 899999999 9999999876542 234444544 8
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
+.+++|+|+++++++++. ++.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 999999999999999874 78899999998 788888888876 899999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCcc
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1135)
+..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 253 ~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------------------------- 292 (369)
T 3zwl_B 253 LKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE------------------------------------- 292 (369)
T ss_dssp EEEEECS---SCEEEEEECSSSSEEEEEECCC------------------------------------------------
T ss_pred eeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC-------------------------------------
Confidence 9888732 368999999999999999999855554432210
Q ss_pred ccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeC
Q 001157 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 782 (1135)
....+++|+...... ... + .+|...|.+++|+|
T Consensus 293 ----------------------------------------~~~~i~~~d~~~~~~---~~~--~--~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 293 ----------------------------------------GKFEARFYHKIFEEE---IGR--V--QGHFGPLNTVAISP 325 (369)
T ss_dssp ------------------------------------------CEEEEEETTTCCE---EEE--E--ECCSSCEEEEEECT
T ss_pred ----------------------------------------CcceeEEEecCCCcc---hhh--e--ecccCcEEEEEECC
Confidence 002344555443211 111 1 12678899999999
Q ss_pred CcceeeeecccceeEEEeeccc
Q 001157 783 SGLSLLALASNAVHKLWKWQRT 804 (1135)
Q Consensus 783 ~g~~l~~~~~dg~i~iw~~~~~ 804 (1135)
++++|++++.||.|++|++...
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TSSEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999998653
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-33 Score=318.89 Aligned_cols=299 Identities=14% Similarity=0.151 Sum_probs=251.8
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC------ceEEecCCCCeEEEEEEcCC----C---CE
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TR 555 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~ 555 (1135)
....+.+|...|++++|+| .+|++++.||.|++||+.+.+ ....+..|...|.+++|+|+ + ++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3456789999999999977 699999999999999999887 67788899999999999999 9 99
Q ss_pred EEEEeeCCCCCceEEEEeCCCCce-----eEEeeccc----CCceeEEEEe----CCCCE-EEEEecCCeEEEEECCC--
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN-- 619 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~s----~~~~~-l~~~~~dg~i~iwd~~~-- 619 (1135)
|++++. ++.|++||+.+++. ...+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999874 77899999998887 88888884 3489999999 99999 99999999999999998
Q ss_pred ----CeeeE-----EEeC-----CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCC
Q 001157 620 ----MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 620 ----~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----------- 226 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ----------- 226 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC-----------
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc-----------
Confidence 66665 6644 3445579999999999 9999999999999998765 222111100
Q ss_pred CcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEE
Q 001157 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
..| .. . ...|.+
T Consensus 227 ---~~h-------------------------------------------------------------~~---~-~~~i~~ 238 (397)
T 1sq9_A 227 ---HSM-------------------------------------------------------------IN---N-SNSIRS 238 (397)
T ss_dssp ---C----------------------------------------------------------------C---C-CCCEEE
T ss_pred ---ccc-------------------------------------------------------------cc---c-CCccce
Confidence 000 00 1 456788
Q ss_pred EEeecCCCEEEEEe-C---CeEEEEeCCCceEEEEeeC-------------CCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 846 IALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 846 l~~s~dg~~la~~s-d---g~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|++
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRF 317 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 89999999998888 7 8899999999999999988 999999999999 8999999999999999
Q ss_pred EEcccceEeEeec------Cc---------------cCceEEEEEcCCC----------CeEEEEcCCCcEEEEeCCCcc
Q 001157 909 YNVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 909 wd~~~~~~~~~l~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
||+.+++.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999999999 88 9999999999998 799999999999999998753
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-34 Score=328.13 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=226.1
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc--cccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
+.+.|++++|+|+|+ +|++|+.||.|+|||+.++ +.+.. +.+|.+.|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7899999999999999987 44332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe---eEEEecC-CCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~l~~-h~~ 498 (1135)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334446778999999999999999 79999999999999999887 4778887 999
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCC------------------CCceEEecCCCCeEEEEEEcCCCCEEEEEe
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .+|++++.|+.|++||+.. +.....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999998865 8999999999999999853 2233344 7888999999999999999997
Q ss_pred eCCCCCceEEEEeCCCCce----eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe---------------
Q 001157 561 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 621 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1135)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 4 78899999999987 788888877 89999999999999988776666 66654211
Q ss_pred ------------------------eeEEEeC-----------CCCCCCcCeEEEecC-CC---EEEEEeCCCcEEEEEC
Q 001157 622 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~~-~~---~l~~~~~dg~v~iw~~ 661 (1135)
....... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014557889987653 33 6999999999999985
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-32 Score=314.63 Aligned_cols=287 Identities=16% Similarity=0.249 Sum_probs=241.2
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.+.+++|++ .. +++++.||.|++||+.+++.... ....|...|.+++|+|++++|++|+
T Consensus 95 ~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 95 YLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCEEEEEC
Confidence 355667765 33 44567899999999999876542 1224889999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC-CCeeEEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.+|...|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987665 677999999999994 45 89999999999999998 567788899999999999999
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|++ .+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 SDG--LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp TTS--SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred CCC--CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 854 89999999999999999999888899999999999999998765554431 124889999999999999888744
Q ss_pred cCCceeEEEEeCCCCEEEEE--ecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 587 RKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. .+.+++|+|++++++++ +.||.|++|++.+++.........+...|.+++|+|++.+|++++.||.|++|++.++
T Consensus 304 ~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 S--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp S--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred C--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3 79999999999999995 4899999999999776666544444558999999999999999999999999999988
Q ss_pred chh
Q 001157 665 VRL 667 (1135)
Q Consensus 665 ~~~ 667 (1135)
...
T Consensus 382 ~~~ 384 (401)
T 4aez_A 382 DHV 384 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 433
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-32 Score=338.48 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=220.4
Q ss_pred cccccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCce--eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcE
Q 001157 403 LLNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg-~~la~~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i 479 (1135)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 367899999999999875 79999999999999999875432 22346789999999999999999 89999999999
Q ss_pred EEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCCCCeEEEEEEcCCC--C
Q 001157 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADG--T 554 (1135)
Q Consensus 480 ~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~ 554 (1135)
+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS--SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCC--CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 999999999999999999999999998865 89999999999999998654332222 3567789999999987 5
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888874 78899999999999999999887 8999999999999999999999999999999988776543 36
Q ss_pred cCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
|.+++|+|++.++++++ ++.|++||+.++ .....+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~ 640 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK 640 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence 89999999999888765 567999999887 5555443
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=317.79 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=210.2
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 46899999999998 899999999999 6444432 35799999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC-----Ce
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----PV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~-----~v 500 (1135)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ +||+++.||.|++||.+. ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 5665555554432211 22 4688999999999999 899999999999999543 677777 766 49
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc-------eEEe----cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+++|+|++ ++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 999998865 9999999999999999998753 3454 5677899999999999 666653 7889
Q ss_pred EEEeCCCCce---eEEee-cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEE--ecC
Q 001157 570 VEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKE 643 (1135)
Q Consensus 570 ~~wd~~~~~~---~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~~ 643 (1135)
++||+..+.. .+++. +|.. .|.+++|+ |+.+++++ +++|++||+.+++......+ +...+..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCC
Confidence 9999988774 35664 5544 89999999 68999887 69999999998877444434 4558999999 999
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 001157 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~v~iw~~~ 662 (1135)
+..+++++.||+ ++|...
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 999999999999 999864
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=322.69 Aligned_cols=349 Identities=14% Similarity=0.164 Sum_probs=241.6
Q ss_pred ceEEEEeCCCCceeEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeC-----------CCCCCC
Q 001157 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPA 634 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 634 (1135)
..+++|++..++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3467788888888888888877 899999999 999999999999999999998765544431 124558
Q ss_pred cCeEEEec-CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCC
Q 001157 635 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 635 v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1135)
|.+++|+| ++.+|++++.||.|++||+.++ +....+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~----------------------------------------- 139 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-QTADVFN----------------------------------------- 139 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTT-EEEEEEE-----------------------------------------
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-ccceecc-----------------------------------------
Confidence 99999999 7889999999999999998765 1111100
Q ss_pred CCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccc
Q 001157 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 793 (1135)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec---CCCEEEEEe-CCeEEEEeCC
Q 001157 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMM 869 (1135)
Q Consensus 794 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~ 869 (1135)
+ ...+.++++++ ++.++++++ ++.|++||+.
T Consensus 140 --------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 140 --------------------------------------------F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp --------------------------------------------C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred --------------------------------------------C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 1 33455555555 455888888 8999999999
Q ss_pred CceEEEEeeCCCCCeeEEEEeCCCCc-EEEEEeCCccEEEEEcccce-EeEee---------------cCccCceEEEEE
Q 001157 870 TFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVDE-VKTKL---------------KGHQNRITGLAF 932 (1135)
Q Consensus 870 ~~~~~~~~~~~~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~i~~l~~ 932 (1135)
+++.+..+.+|...|++++|+| ++. +|++|+.||.|++||+.+++ .+..+ .+|...|.+++|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 9999999999999999999999 665 69999999999999998765 33333 679999999999
Q ss_pred cCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCcccccC
Q 001157 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWS 1011 (1135)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~~ 1011 (1135)
+|++++|++++.|+.|++||+.+++.............. ............+.+++++.++.|++||+ +++.+..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 999999999999999999999987753322111111111 01222333344556666689999999999 66666655
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEec
Q 001157 1012 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1012 ~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~ 1091 (1135)
.+|...|++++|+|++++|++++.||.|++||+.+++.+...... .....+.+.......+++.
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 394 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET--------------TTKSQLNPAFEDAWSSSDE 394 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce--------------EeccccccccceeecccCc
Confidence 456899999999999999999999999999999999877554311 1112334435556777888
Q ss_pred CCcEEEEecCCC
Q 001157 1092 DGAVHVVEPSDA 1103 (1135)
Q Consensus 1092 Dg~i~lW~~~~~ 1103 (1135)
|+.+++|+....
T Consensus 395 ~~~~~~W~~~~~ 406 (408)
T 4a11_B 395 EGGTSAWSHPQF 406 (408)
T ss_dssp ------------
T ss_pred cCceeecCCccc
Confidence 999999987643
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-32 Score=300.62 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=213.2
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~i 481 (1135)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 123378899999999999864 77 8999999999999
Q ss_pred EEcCCCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCC-----
Q 001157 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 552 (1135)
Q Consensus 482 wd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 552 (1135)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999999975568999999999999999987642 4567788999999999997
Q ss_pred --------CCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCCC---CEEEEEecCCeEEEEEC
Q 001157 553 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~ 617 (1135)
+++|++++. |+.|++||++++. ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 568998875 7889999998766 5677888877 89999999985 89999999999999999
Q ss_pred CCCe--ee-EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 618 DNMN--ML-TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 618 ~~~~--~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.+.. .. ..+....+...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 11 222223445578999999999999999999999999975
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-33 Score=324.49 Aligned_cols=301 Identities=16% Similarity=0.209 Sum_probs=228.1
Q ss_pred eEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEEeCCCcEE
Q 001157 580 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~ 657 (1135)
......|.. .|++++|+| ++++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455555 799999999 45789999999999999999888777776666677899999998 789999999999999
Q ss_pred EEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCc
Q 001157 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
+||+.++. ...+..
T Consensus 191 iwd~~~~~--~~~~~~---------------------------------------------------------------- 204 (435)
T 4e54_B 191 LQDFKGNI--LRVFAS---------------------------------------------------------------- 204 (435)
T ss_dssp EEETTSCE--EEEEEC----------------------------------------------------------------
T ss_pred EeeccCCc--eeEEec----------------------------------------------------------------
Confidence 99986441 000000
Q ss_pred cccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccc
Q 001157 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1135)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 817 (1135)
.+
T Consensus 205 --------------------------------------------~~---------------------------------- 206 (435)
T 4e54_B 205 --------------------------------------------SD---------------------------------- 206 (435)
T ss_dssp --------------------------------------------CS----------------------------------
T ss_pred --------------------------------------------cC----------------------------------
Confidence 00
Q ss_pred ceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcE
Q 001157 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1135)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~ 896 (1135)
.+ ...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+
T Consensus 207 -------------------~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 207 -------------------TI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp -------------------SC-SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred -------------------CC-CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceE
Confidence 02 44567789999999999998 8999999986 45667788999999999999955568
Q ss_pred EEEEeCCccEEEEEcccceEeEe---ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001157 897 IAIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1135)
Q Consensus 897 lasg~~dg~v~iwd~~~~~~~~~---l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1135)
|++|+.|+.|+|||+.+++.... ..+|...|++++|+|+|++|++++.|++|++||+.+++.......... ....
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~--~~~~ 343 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH--RHFQ 343 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC--CCCS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc--cccc
Confidence 99999999999999988764443 468999999999999999999999999999999998775432211110 0000
Q ss_pred CCCceeEEECCCCcEEEEE-------------ECCcEEEEec-cCCcccccCCCCCCCCCeEEE-EEccCCCEEEEEecC
Q 001157 974 LVGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFCD 1038 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~-------------~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~-~~s~dg~~l~s~~~d 1038 (1135)
...+..+.|+|++..++++ .++.|++||. +++.+..+. .+|...|.++ +|+|||++|++|+ |
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d 420 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-G 420 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-S
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-C
Confidence 1223445666666666553 2357999999 666655543 3467888887 6999999999876 8
Q ss_pred CcEEEEecCCCce
Q 001157 1039 GAIGVFDAETLRF 1051 (1135)
Q Consensus 1039 g~V~vwd~~~~~~ 1051 (1135)
+.|+||++++|+.
T Consensus 421 ~~i~iW~~~~gk~ 433 (435)
T 4e54_B 421 YHILIWSQQEART 433 (435)
T ss_dssp SEEEECCCC----
T ss_pred CcEEEEECCcCee
Confidence 8999999999875
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.3e-32 Score=312.30 Aligned_cols=282 Identities=15% Similarity=0.250 Sum_probs=243.4
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.++.++||+++ +||+|. |++|+|||+.+|+.+... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999875 688876 999999999999765421 1457888999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h~~~v~~l~~~ 506 (1135)
.||+|+|||+.+++.+. .+.+|...|.+++++ +. ++++|+.|+.+++||... ...+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 778999999988875 55 899999999999999886 45567889999999999998
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCc----eEEecCCCCeEEEEEEcCCCCEE-EEEeeCCCCCceEEEEeCCCCceeE
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+.+ .++++++.|+.+++|+..+++. ......+...|.+++|+|++..+ ++++. ..|+.|++||+.+++...
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 865 8999999999999999987653 44667788899999999977654 44443 358899999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 688899999999998865 79999999999999999998775 489999999999999999999999999
Q ss_pred ECCCc
Q 001157 660 ANSDG 664 (1135)
Q Consensus 660 ~~~~~ 664 (1135)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
No 82
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-32 Score=311.27 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=213.5
Q ss_pred cccccCCCeeEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCceeeeeEee--cCCCCeeEEEEecC----CCceEEEE
Q 001157 403 LLNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHP----NKQLCIVT 472 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd----g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d----~~~~~l~s 472 (1135)
+..+|.++|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|++++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999994 4566777777799999999887765443333 26788999999999 55 8999
Q ss_pred EcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe---cCCCCeEEEEEE
Q 001157 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAY 549 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1135)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++++....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999983 2389999999999999999998888877 678899999999
Q ss_pred cCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec----------------------------ccCCceeEEEEeCCCC
Q 001157 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG----------------------------FRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~s~~~~ 601 (1135)
+|+++++++++. ++.|++||+++++....+.. |.. .|.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 999999999974 77899999998765544432 555 89999999 77
Q ss_pred EEEEEecCCeEEEEECCCCee--------------eEEEeCCCCCCCcCeEEEecC--CCEEEEEeCCCcEEEEECCCc
Q 001157 602 RFLAAGDEFQIKFWDMDNMNM--------------LTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++++.|+.|++||+.+++. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987644 66666554 47999999999 999999999999999999877
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-34 Score=319.40 Aligned_cols=223 Identities=7% Similarity=0.033 Sum_probs=180.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC
Confidence 3457899999999999999999999999 755554 346899999999999998 36666666633
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC-----eEEEEEEcCCCCEEEEEe
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-----WCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~ 560 (1135)
+..+..+ .|...|.+++|+|++ .+|++++.||.|++||.+. ....+. |.. .+.+++|||||++|++++
T Consensus 76 -~~~~~~~-~~~~~V~~vawSPdG--~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 76 -QNGLLNS-QPVCYPRVCKPSPID--DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp -SSCSSTT-SCSCCEEEEEECSSS--SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred -CceEeec-CCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 2223333 468899999999865 8999999999999999544 444555 554 599999999999999998
Q ss_pred eCCCCCceEEEEeCCCCce-------eEEe----ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee---eEEE
Q 001157 561 TSKEGESHLVEWNESEGAI-------KRTY----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM---LTTV 626 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~ 626 (1135)
. |++|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|++|++|++.+++. ..++
T Consensus 149 ~----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 149 E----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp T----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred C----CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence 4 88999999998863 5666 45444 89999999999 88889999999999998774 3455
Q ss_pred e-CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 627 D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 627 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. +| ...|.+++|+ |..||+++ +++|++||+.++
T Consensus 222 ~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 222 QNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp ECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred cccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 3 43 3479999999 68999887 699999998776
No 84
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.3e-32 Score=311.96 Aligned_cols=364 Identities=12% Similarity=0.182 Sum_probs=254.0
Q ss_pred CCcEEEEEcCCCeeEEEecCCCCCeEEEEecc-CCCccEEEEEEcCCeEEEEeCCCCCceEEec-------------CCC
Q 001157 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------APG 541 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------~~~ 541 (1135)
++.+++|++..++....+.+|.+.|++++|+| ++ ++|++++.||.|++||+.+......+. .|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 45678898888888889999999999999988 55 899999999999999999876654332 588
Q ss_pred CeEEEEEEcC-CCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC---CEEEEEecCCeEEEEEC
Q 001157 542 NWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~ 617 (1135)
..|.+++|+| +++++++++. ++.|++||+.+++....+... . .+.++.+++.+ .++++++.|+.|++||+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 8999999999 7778888874 788999999999988888743 3 78899999854 59999999999999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1135)
.+++.+..+..+.. .|.+++|+|++. ++++++.||.|++||+.++......+..+.......
T Consensus 174 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--------------- 236 (408)
T 4a11_B 174 KSGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA--------------- 236 (408)
T ss_dssp SSSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC---------------
T ss_pred CCcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee---------------
Confidence 99999988886644 799999999998 689999999999999988754554443322110000
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
+ ......|...|.
T Consensus 237 --------------------------------------------------~-----------------~~~~~~~~~~v~ 249 (408)
T 4a11_B 237 --------------------------------------------------V-----------------ESANTAHNGKVN 249 (408)
T ss_dssp --------------------------------------------------T-----------------TTSSCSCSSCEE
T ss_pred --------------------------------------------------e-----------------ccccccccCcee
Confidence 0 000023678899
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
+++|+|+++++++++.||.|++||+...+..... .+.. ..... ............+.+++
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKV-----CNNSK-KGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCC-----CCCCS-SCCCCEECCSSSSCEEE
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCCccceec--------------cccc-----ccccc-ccceeEEecCCCceEEE
Confidence 9999999999999999999999998653321000 0000 00000 11222333334455555
Q ss_pred EEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcC-C
Q 001157 857 SASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-T 935 (1135)
Q Consensus 857 ~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d 935 (1135)
++.++.|++||+.+++++..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~ 385 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAF 385 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-----------------------
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccccc
Confidence 55699999999999999999999999999999999 8999999999999999999999887765544322 22333 3
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001157 936 LNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~ 955 (1135)
...+.+.+.|+.+++|+...
T Consensus 386 ~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 386 EDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------
T ss_pred ceeecccCccCceeecCCcc
Confidence 34566777899999998764
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.7e-33 Score=314.72 Aligned_cols=292 Identities=12% Similarity=0.097 Sum_probs=215.6
Q ss_pred CceEEEEEeCCcceeeeeccc-------ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeE
Q 001157 773 SKVVRLIYTNSGLSLLALASN-------AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~ 845 (1135)
.+|.+++|+|||+.|++|+.+ +.|++|++............. .....+.+ | ...+.+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~-------------~~~~~l~~--~-~~~v~s 78 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHI-------------LSEFALED--N-DDSPTA 78 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEE-------------EEEEECCT--T-SCCCCE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeee-------------eeEEEccC--C-CCceEE
Confidence 579999999999999998764 359999886432211000000 00011222 5 667777
Q ss_pred EEeecCCCEEEEE-----------e-CCeEEEEeCCCceE----EEEee-----CCCCCeeEEEEeCCCCcEEEEE--eC
Q 001157 846 IALSKNDSYVMSA-----------S-GGKVSLFNMMTFKV----MTMFM-----SPPPAATFLAFHPQDNNIIAIG--ME 902 (1135)
Q Consensus 846 l~~s~dg~~la~~-----------s-dg~i~iwd~~~~~~----~~~~~-----~~~~~v~~l~~sp~~~~~lasg--~~ 902 (1135)
+++ ++..+++| + |+.+++|++.+... ..... .+...+.+++||| ||++||++ +.
T Consensus 79 ~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~ 155 (365)
T 4h5i_A 79 IDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKV 155 (365)
T ss_dssp EEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCS
T ss_pred EEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCC
Confidence 765 45566654 3 56799999865422 12211 2345689999999 88887654 47
Q ss_pred CccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEE
Q 001157 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1135)
|++|+|||+.+++++..+. |.+.|.+|+|+|||++|++++.|+ +++|+..+++... .....+|. ..+.+++|
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~f 227 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINF 227 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEE
Confidence 8999999999999998886 778899999999999999998665 6677776665322 22333444 67899999
Q ss_pred CCCCcEEEE-EECC----cEEEEeccCCcc--cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 983 HNDQTHLLV-VHES----QISVYDSKLECS--RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 983 spdg~~l~~-~~d~----~i~vwd~~~~~~--~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+|||+++++ +.++ .+++|++..... .......+|..+|++++|||||++||+|+.|++|+|||+.+++++..+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 999999998 4555 578888732221 112223466899999999999999999999999999999999988765
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
. .+|...|++++|+| |+++||||+.|++|+||++..
T Consensus 308 ~----------~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 K----------QAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp T----------TSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred c----------CcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 2 38899999999999 899999999999999999964
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=292.89 Aligned_cols=288 Identities=15% Similarity=0.195 Sum_probs=248.0
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+....+.+|...|.+++| +++ .+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677889999999999999 654 79999999999999999988888888889999999999999999999974 7
Q ss_pred ceEEEEeCCCC---ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-
Q 001157 567 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 642 (1135)
Q Consensus 567 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 642 (1135)
+.|++|++... +.+..+.+|.. .|.+++| +++++++++.||.|++|| .++.+..+..+.. .+.+++|+|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 78999998754 56777888776 8999999 578999999999999999 6777777776644 789999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCccc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++.++++++.||.|++||.... ...+..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~------------------------------------------------- 181 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IKTFSG------------------------------------------------- 181 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EEEECS-------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EEEEec-------------------------------------------------
Confidence 9999999999999999983211 000000
Q ss_pred CccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeec
Q 001157 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 802 (1135)
T Consensus 182 -------------------------------------------------------------------------------- 181 (313)
T 3odt_A 182 -------------------------------------------------------------------------------- 181 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC
Q 001157 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~ 881 (1135)
.| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|.
T Consensus 182 ----------------------------------~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 182 ----------------------------------IH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp ----------------------------------SC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ----------------------------------cC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 03 66788999999998 66666 8999999999999999999999
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~ 959 (1135)
..|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.|+.|++||+.+++..
T Consensus 226 ~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 SFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999 66 588999999999999999999999999999999999999998 667899999999999987643
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-31 Score=305.09 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=217.4
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|.++|.+++|+|++++|++|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 113337789999999999999999 899999999999999
Q ss_pred cCCCeeEEE--ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc----eEEecCCCCeEEEEEEcCCCCEEE
Q 001157 484 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 484 ~~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
+.+++.... +..|...|.+++|+|++ .+|++++.|+.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 999876544 46799999999998865 8999999999999999998774 223356788999999999999999
Q ss_pred EEeeCCCCCceEEEEeC------------------CCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 001157 558 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+++. ++.|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.|+.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9874 788999995 46788888888776 899999999999999999999999999999
Q ss_pred CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999987643 79999999999988877 899999999987
No 88
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-32 Score=295.90 Aligned_cols=246 Identities=14% Similarity=0.214 Sum_probs=206.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc--cccccccceeecccccccccccccccccCCCeeEEEEcCC--C
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g 420 (1135)
|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+. .+.+|.++|.+++|+|+ |
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCcC
Confidence 889999999999998 7899999999999999754 2222 26789999999999874 8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEEcCCCe--eEEEecCC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~h 496 (1135)
++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999986421 22356789999999999998 77 89999999999999998763 24567899
Q ss_pred CCCeEEEEeccCC-----------CccEEEEEEcCCeEEEEeCCCCC----ceEEecCCCCeEEEEEEcCCC---CEEEE
Q 001157 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---TRLFS 558 (1135)
Q Consensus 497 ~~~v~~l~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~ 558 (1135)
...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++ ++|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999999863 24799999999999999998766 445778899999999999995 78888
Q ss_pred EeeCCCCCceEEEEeCCCCc--e-eEEe--ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 559 CGTSKEGESHLVEWNESEGA--I-KRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~--~-~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
++. |+.|++||++++. . ...+ ..+.. .|.+++|+|++++|++++.|+.|++|+..
T Consensus 225 ~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 874 7889999987643 1 2223 33444 79999999999999999999999999976
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9e-32 Score=314.87 Aligned_cols=298 Identities=12% Similarity=0.189 Sum_probs=233.2
Q ss_pred cCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC------------CCe
Q 001157 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------ISV 411 (1135)
Q Consensus 344 ~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V 411 (1135)
.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. +.|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCce
Confidence 4567999999999998 7899999999999999987631100000 000111256787 889
Q ss_pred eEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCcee------------------------------------ee-eEeecC
Q 001157 412 NRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QH-LEIDAH 452 (1135)
Q Consensus 412 ~~v~~spdg--~~la~~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~~~~h 452 (1135)
.+++|+|++ .+|++++.|++|++||+.++.... .. ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999997643210 00 113579
Q ss_pred CCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEE-------EecCCCCCeEEEEeccCCCccEEEEEEcCCeEE
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~ 524 (1135)
...|++++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++++.||.|+
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIR 252 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEE
Confidence 99999999999999 88998 799999999984 44444 2568999999999988642 7999999999999
Q ss_pred EEeCCCCCc----eEEecCCCC------------eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-CceeEEeeccc
Q 001157 525 AWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFR 587 (1135)
Q Consensus 525 ~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~ 587 (1135)
+||++++.. ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++++..+.+|.
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESCG
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeeccc
Confidence 999998876 677777765 899999999999999886 27899999997 88888888875
Q ss_pred CC-----------c---eeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC------------------------
Q 001157 588 KR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD------------------------ 629 (1135)
Q Consensus 588 ~~-----------~---v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------ 629 (1135)
.. . +..++|+|++++|++++.||.|++||+.+++.+.. ..+
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccc
Confidence 30 0 22389999999999999999999999999887642 221
Q ss_pred -------CCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 630 -------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 630 -------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.....|..++|+|++.+||+++.++ +++|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123578899999999999998775 778764
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=308.54 Aligned_cols=299 Identities=11% Similarity=0.149 Sum_probs=238.3
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCC---CCEEEEEecCCeE
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQI 612 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i 612 (1135)
....|...|.+++|+|++..+++++....+++.|++||+.+++........+...|.+++|+|+ +++|++++.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3456889999999999998777665321248899999999988765554333348999999999 6999999999999
Q ss_pred EEEECCCCe-eeEEEeCCCCCCCcCeEE------EecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCC
Q 001157 613 KFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 613 ~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
++||+.+++ .+..+..|.. .|.+++ |+|++++|++++.||.|++||+.++......+..+...
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------- 162 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE-------- 162 (357)
T ss_dssp EEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS--------
T ss_pred EEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC--------
Confidence 999999988 8888876644 788885 46899999999999999999998774344443322110
Q ss_pred CcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEE
Q 001157 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCceEEEE----EeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCC
Q 001157 766 LPDSIAASKVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~----~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 841 (1135)
....+.+++ |+|+++.+++++.+|.|++||+... ..... . .| ..
T Consensus 163 -----~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~~--~--~~-~~ 210 (357)
T 3i2n_A 163 -----NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRWE--T--NI-KN 210 (357)
T ss_dssp -----CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEEE--E--EC-SS
T ss_pred -----CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceeee--c--CC-CC
Confidence 123566776 7899999999999999999987532 11111 1 15 78
Q ss_pred CeeEEEeec---CCCEEEEEe-CCeEEEEeCCCceEEEEe-----eCCCCCeeEEEEeCCCCc-EEEEEeCCccEEEEEc
Q 001157 842 SAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNV 911 (1135)
Q Consensus 842 ~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~-~lasg~~dg~v~iwd~ 911 (1135)
.|.+++|+| ++.++++++ ||.|++||+.+++.+..+ .+|...|++++|+| ++. +|++|+.||.|++||+
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeec
Confidence 899999999 999999998 999999999876654444 38999999999999 777 8999999999999999
Q ss_pred ccc-------------------eEeEeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCcc
Q 001157 912 RVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 912 ~~~-------------------~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~ 957 (1135)
.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 854 46778899999999999999999998 89999999999998754
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.8e-31 Score=290.44 Aligned_cols=283 Identities=15% Similarity=0.255 Sum_probs=237.8
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
..++|+||+++ +||+|. |++|+|||+.+++.+... .+.+|...|.+++|+|+|++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEE
Confidence 36789999987 677775 999999999999876431 1457889999999999999999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~h~~~v~~l~~~ 506 (1135)
.||+|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+...+ ..+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999987665 67789988877655 456 8999999999999998875 4567888999999999998
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCc----eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.+ .++++++.||+|++||+++++. ......+...|.+++++|++..++.... +..++.|++||.........
T Consensus 160 ~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred CCC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 765 8999999999999999987654 3455667789999999998776553221 13578999999998887766
Q ss_pred eecccCCceeEEEEeCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
..... .+..+.|+++++.+++++ .|+.|++||+.+++++.++.+|. ..|.+++|+|+|++|++|+.||+|++||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 65443 688999999999988765 79999999999999999998764 4899999999999999999999999999
Q ss_pred CCCc
Q 001157 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=314.21 Aligned_cols=242 Identities=13% Similarity=0.089 Sum_probs=200.7
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
..+.++|.+++|+|+|++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 3333 6779999999999999998 89999999999999
Q ss_pred EcCCCe---eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc---eEEecC-CCCeEEEEEEcCCCCE
Q 001157 483 DVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~---~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~ 555 (1135)
|+.+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+. ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 677888999999999998855 8999999999999999998773 566666 8999999999999999
Q ss_pred EEEEeeCCCCCceEEEEeCC------------------CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 556 LFSCGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
|++++. ++.|++||+. .++++..+ +|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 161 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 161 LAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999975 7789999985 35566666 6555 8999999999999999999999999999
Q ss_pred CCCee----eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 618 DNMNM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 618 ~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99887 66676654 479999999999999998777665 66654
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-31 Score=302.89 Aligned_cols=293 Identities=16% Similarity=0.251 Sum_probs=235.6
Q ss_pred EEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC
Q 001157 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1135)
.+..++......+.++.+++ ..+++++.|+.|++|++.. +......... | ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~~--~-~~~ 136 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADS----------------------GSVSALAETD--E-STY 136 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTT----------------------CCEEEEEECC--T-TCC
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCC----------------------CcEeEeeecC--C-CCC
Confidence 33444433334455666665 5588999999999998643 2222211112 5 889
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcc-cceEeEee
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKL 920 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l 920 (1135)
|.+++|+|++++|++|+ ||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+. .+..+..+
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE
Confidence 99999999999999998 99999999999999999999999999999965 599999999999999999 56778889
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-EE---CCc
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQ 996 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~ 996 (1135)
.+|.+.|.+++|+|++++|++++.|+.|++||+.+++. .....+|. ..|.+++|+|++..+++ +. |+.
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-----KFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-----EEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-----cEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCE
Confidence 99999999999999999999999999999999998663 33334444 68999999998765555 53 899
Q ss_pred EEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEE--ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCc
Q 001157 997 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG--FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHP 1073 (1135)
Q Consensus 997 i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~--~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
|++||+ +++.+..+. |...|.+++|+|++++|+++ +.||.|++||+.+++...... ..+|...+
T Consensus 286 i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~---------~~~h~~~v 352 (401)
T 4aez_A 286 IHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD---------IPAHDTRV 352 (401)
T ss_dssp EEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE---------EECCSSCC
T ss_pred EEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE---------ecCCCCCE
Confidence 999999 666655553 36789999999999999995 489999999999876554432 23788899
Q ss_pred EEEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1074 ~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
.+++|+| ++++|++++.||.|++|++.+++...
T Consensus 353 ~~~~~s~-dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 353 LYSALSP-DGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp CEEEECT-TSSEEEEECTTSEEEEEECCC-----
T ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCcccc
Confidence 9999999 88999999999999999999877533
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-30 Score=300.62 Aligned_cols=294 Identities=18% Similarity=0.276 Sum_probs=238.6
Q ss_pred eEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCC
Q 001157 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 841 (1135)
+.+..|....+-.+..++||+++ +++.+.|++|+|||.. +|..... +....| ..
T Consensus 95 ~~l~ap~~~~d~y~~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~ 148 (420)
T 4gga_A 95 RILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GE 148 (420)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TC
T ss_pred eEEECCCCcccccceeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CC
Confidence 44455554455567889999865 4444569999999753 3433221 122236 78
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-eEeEe
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTK 919 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~ 919 (1135)
.|++++|+|||++||+|+ ||+|+|||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||.... ..+..
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEE
Confidence 899999999999999999 99999999999999999999999999988864 69999999999999998864 56678
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEE-EE---ECC
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VV---HES 995 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~-~~---~d~ 995 (1135)
+.+|...+..+.|+|+++++++++.|+.+++|+..+++.... .+.....+. ..|..++|+|++..++ ++ .|+
T Consensus 226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTC
T ss_pred ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCC
Confidence 999999999999999999999999999999999998764322 223333444 6899999999876554 43 489
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEecCCCceeeccCCCcccCccccCCCCCC
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
.|++||+ ++.+...+.. ...+.++.|+++++.|++++ .||.|+|||+.+++.+..+. +|...
T Consensus 302 ~I~iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-----------gH~~~ 366 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSR 366 (420)
T ss_dssp EEEEEETTTTEEEEEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSC
T ss_pred EEEEEeCCccccceeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-----------CCCCC
Confidence 9999999 6665555432 56799999999999988765 79999999999999988775 88899
Q ss_pred cEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
|++++|+| ++++||||+.|++|++||+...+
T Consensus 367 V~~l~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 367 VLSLTMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 99999999 88999999999999999997544
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.8e-32 Score=297.09 Aligned_cols=251 Identities=11% Similarity=0.090 Sum_probs=203.6
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCce--EEEEeeCCCCCeeEEEEeCC-CCcEEEEEeCCccEEEEEccc
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~-~~~~lasg~~dg~v~iwd~~~ 913 (1135)
| ...|.+++|+|+|++||+|+ |++|+|||+.+++ ++..+.+|...|.+++|+|+ ++.+|++|+.|++|++||+.+
T Consensus 12 H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 H-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred c-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 8 99999999999999999999 9999999998764 56789999999999999862 478999999999999999998
Q ss_pred c--eEeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC----
Q 001157 914 D--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---- 985 (1135)
Q Consensus 914 ~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd---- 985 (1135)
+ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++... .......+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeecccc---CCcceEEEccccCCc
Confidence 7 466778899999999999998 789999999999999999875321 1233445555 67899999998
Q ss_pred -------------CcEEEE-EECCcEEEEecc-CCcccccCCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEec
Q 001157 986 -------------QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 986 -------------g~~l~~-~~d~~i~vwd~~-~~~~~~~~~~~~h~~~i~~~~~s~dg----~~l~s~~~dg~V~vwd~ 1046 (1135)
+++|++ +.|+.|++||+. ...........+|...|.+++|+|++ ++|++++.||+|++|++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 467777 579999999994 32212222335789999999999987 89999999999999999
Q ss_pred CCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1047 ETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.++..-... .....+|...+.+++|+| ++++||+++.|++|++|+...
T Consensus 246 ~~~~~~~~~-------~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWS-------PKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCB-------CCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchh-------hhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 873210000 011236778999999999 889999999999999999863
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.9e-31 Score=305.31 Aligned_cols=272 Identities=21% Similarity=0.310 Sum_probs=237.7
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 5668998887 776 788999999999999998876653 6789999999999 899999
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE---EEecCCCCCeE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 501 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~l~~h~~~v~ 501 (1135)
+|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.++..+ ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987665 6778999999999973 4 7999999999999999987765 67889999999
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
++++ +++++++++.||.|++||+++++....+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999998 4689998874 7889999999999999
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe---------eeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.+.+|.. .|.+++| +++++++|+.||.|++||+.+++ .+..+..|. ..|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEeC
Confidence 9999877 8999888 78899999999999999987665 677777664 47999999 7889999999
Q ss_pred CCcEEEEECCCc
Q 001157 653 DNGIKILANSDG 664 (1135)
Q Consensus 653 dg~v~iw~~~~~ 664 (1135)
||.|++||+.++
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.7e-31 Score=305.39 Aligned_cols=296 Identities=13% Similarity=0.178 Sum_probs=242.7
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC-CCCEEEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~la~~ 426 (1135)
....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4567899999876777789999999999965432211 1112678999999999999 99999999
Q ss_pred eCCCeEEEEEcCCCCce----eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe--cCCCCCe
Q 001157 427 FSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPV 500 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l--~~h~~~v 500 (1135)
+.||.|++||+.++... .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 223377899999999999999843 8999999999999999999999999 8899999
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCCCe-EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+++|+|++ .+|++++.||.|++||+++++....+ ..|... +.+++|+|++++++++. ++..++.|++||+++++
T Consensus 180 ~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 999998854 89999999999999999998888877 666664 89999999999888873 12248899999999876
Q ss_pred e-eEEeecccCCceeEEEEeCCCCEEEE-EecCCeEEEEECCCCee-eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCc
Q 001157 579 I-KRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
. +..........+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 44444333347999999999999975 55799999999998874 555555444568999999999988764 5679
Q ss_pred EEEEECCCc
Q 001157 656 IKILANSDG 664 (1135)
Q Consensus 656 v~iw~~~~~ 664 (1135)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999876
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6e-32 Score=298.82 Aligned_cols=250 Identities=18% Similarity=0.293 Sum_probs=206.6
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999886432 23368899999999999863 67 799999999999
Q ss_pred EEEcCCC--eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCC---
Q 001157 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 552 (1135)
Q Consensus 481 iwd~~~~--~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1135)
+||++++ ..+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9999987 4667888999999999999986678999999999999999987643 2345667788999999998
Q ss_pred --------------CCEEEEEeeCCCCCceEEEEeCCCC---ceeEEeecccCCceeEEEEeCCC----CEEEEEecCCe
Q 001157 553 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 611 (1135)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~ 611 (1135)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 467888764 788999999755 46677888877 89999999986 88999999999
Q ss_pred EEEEECCCC---e-eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 612 IKFWDMDNM---N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 612 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
|++|++.+. + ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 12233333 3479999999999999999999999999975
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.5e-31 Score=295.30 Aligned_cols=279 Identities=9% Similarity=0.097 Sum_probs=238.3
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC-EE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l 423 (1135)
|.+.|++++|+|+++ +|++|+.||.|+||++.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 888999999999998 788999999999999987762110 001347999999999999999 99
Q ss_pred EEEeCCCeEEEEEc-CCCCceeeeeEeec--CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---------CeeEE
Q 001157 424 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 491 (1135)
Q Consensus 424 a~~~~dg~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~~ 491 (1135)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87653 26778 999999999999 77 899999999999999988 77777
Q ss_pred EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCc--eEEecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCc
Q 001157 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 492 ~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+. |...|.+++|+++ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 776 8999999999764 299999999999999988 443 334556778999999999 9999999874 78
Q ss_pred eEEEEeCCCC------ceeEEeecccC--------CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-CCC
Q 001157 568 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGL 632 (1135)
Q Consensus 568 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 632 (1135)
.|++|++... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~-- 294 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-- 294 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC--
Confidence 8999999877 77888887743 37999999999999999999999999999999998888765 4
Q ss_pred CCcCeEEEecCCCEEEEEeCCCc-EEEEE
Q 001157 633 PASPRLRFNKEGSLLAVTTSDNG-IKILA 660 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg~-v~iw~ 660 (1135)
..|.+++ |++++|++++.||. .+.+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 3788888 99999999999998 44443
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.8e-30 Score=283.65 Aligned_cols=294 Identities=17% Similarity=0.253 Sum_probs=233.2
Q ss_pred EEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCC
Q 001157 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 842 (1135)
.+..|+...+-....++||+++ +++.+.|++|+|||+. +++.+.. +....| ...
T Consensus 16 vldap~~~~d~y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~-~~~ 69 (318)
T 4ggc_A 16 ILDAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEY 69 (318)
T ss_dssp EEECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCC
T ss_pred EeeCCCCcccccceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCe
Confidence 3344442222345779999987 4445569999999753 3433321 222237 889
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-eEeEee
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKL 920 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l 920 (1135)
|.+++|+|++++|++|+ ||+|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+..+. ..+..+
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEE
Confidence 99999999999999999 9999999999999999999999988877665 469999999999999998875 566778
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE-E---ECCc
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V---HESQ 996 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~---~d~~ 996 (1135)
.+|...+..+++++++++|++++.|++|++||+.+++....... ....+. ..|..++++|++..++. + .++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee-eecccC---CceEEEEecCCCCcEEEEEecCCCCE
Confidence 99999999999999999999999999999999998764433222 222232 57899999998775553 2 4688
Q ss_pred EEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcE
Q 001157 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL 1074 (1135)
Q Consensus 997 i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1135)
|++||.......... .+...+..++|++++..+++++ .||.|++||+.+++.+..+. +|...|.
T Consensus 223 i~lwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-----------gH~~~V~ 288 (318)
T 4ggc_A 223 IRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-----------GHTSRVL 288 (318)
T ss_dssp EEEEETTTCCEEEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-----------CCSSCEE
T ss_pred EEEEecccccccccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-----------CCCCCEE
Confidence 999999443333222 2367899999999999887765 79999999999999988775 8889999
Q ss_pred EEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1075 ~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++|+| ++++||||+.||+|+|||+...+
T Consensus 289 ~l~~sp-dg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 289 SLTMSP-DGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEECT-TSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 999999 88999999999999999997643
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.9e-30 Score=301.98 Aligned_cols=249 Identities=13% Similarity=0.214 Sum_probs=208.0
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------eeeeeEeecCC------------CCeeEEEEecCC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 465 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~l~~s~d~ 465 (1135)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999998752 12344778998 889999999998
Q ss_pred --CceEEEEEcCCCcEEEEEcCCCeeE---------------------------------------EE-ecCCCCCeEEE
Q 001157 466 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 503 (1135)
Q Consensus 466 --~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-l~~h~~~v~~l 503 (1135)
. .|++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999999875432 12 36899999999
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEE--------ecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCceEEEEeC
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|+|++ .+|+++ .|+.|++||++....... +..|...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 999864 899998 899999999985443332 45788899999999999 89999874 788999999
Q ss_pred CCCce----eEEeecccC-----------CceeEEEEeCCCCEEEEEecCCeEEEEECCC-CeeeEEEeCCCCCCC----
Q 001157 575 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 634 (1135)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1135)
++++. +..+..+.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788887764 27999999999999999998 9999999997 888888887643111
Q ss_pred ---------cCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 635 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 ---------v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 334999999999999999999999999987
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.7e-30 Score=295.29 Aligned_cols=294 Identities=16% Similarity=0.221 Sum_probs=241.8
Q ss_pred CCcceeEEEEec-CCCCeeEEEeecC---CCeEEEEEeCCCcEEEEEcCC-ccccccccceeeccccccccccccccccc
Q 001157 333 DDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 333 d~~~~~~~~~l~-h~~~V~~~~fspd---g~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+..+.+.+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h 85 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH 85 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence 334556677776 9999999999999 45 799999999999999987 433211 25679
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEE--ecCCCceEEEEEcCCCcEEEEEcC
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.+.|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++||+.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC
Confidence 999999999999999999999999999999987644 34579999999999 88887 89999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCCCE----EEEE
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFSC 559 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~ 559 (1135)
+++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... ++++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999999988664 666666653 578999999999999998766554332 23445666666665544 7777
Q ss_pred eeCCCCCceEEEEeCCCC---ceeEEeecccCC-----------ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 001157 560 GTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
+. ++.|++||+... ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++++..
T Consensus 235 ~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 235 SI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp ET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 64 888999999987 567777777643 599999999999999999999999999999999988
Q ss_pred EeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+..+. ..|.+++|+|+|++|++++.|+..+.|++.
T Consensus 311 ~~~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 311 SEQLD--QPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCCS--SCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ecCCC--CCceEEEECCCCCeEEEEeccccccccccc
Confidence 87664 489999999999999999998865555543
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.1e-30 Score=287.18 Aligned_cols=253 Identities=12% Similarity=0.163 Sum_probs=216.7
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i 479 (1135)
.+.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 46789999999999999999999999999999999976432 33446779999999999999 577 89999999999
Q ss_pred EEEEcCCC---------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec------------
Q 001157 480 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 538 (1135)
Q Consensus 480 ~iwd~~~~---------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------------ 538 (1135)
++||+.++ +.+..+.+|...|.+++|+|+.++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 668888999999999999987335899999999999999998876543222
Q ss_pred -CCCCeEEEEEEcCC---CCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCC----CEEEEEec
Q 001157 539 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 608 (1135)
Q Consensus 539 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 608 (1135)
.+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889998874 67788888777765 667777776 89999999998 89999999
Q ss_pred CCeEEEEECCCC----------------------------------------------eeeEEEeCCCCCCCcCeEEEec
Q 001157 609 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
||.|++||+.++ +.+..+..| ...|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcC
Confidence 999999999875 455555544 44799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999887
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.1e-29 Score=292.75 Aligned_cols=233 Identities=17% Similarity=0.305 Sum_probs=209.6
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ +|++|+.||.|++||+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECC
Confidence 57778998887 89999999999999999999987665 77899999999999 677 89999999999999999
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce---EEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~- 274 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG- 274 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-
T ss_pred CCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-
Confidence 9999999999999999999953 68999999999999999987765 567788999999999 7889999874
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
++.|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..|.. .|.+++|
T Consensus 275 ---dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~-- 344 (435)
T 1p22_A 275 ---DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF-- 344 (435)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--
T ss_pred ---CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--
Confidence 88899999999999999999877 88888884 68999999999999999999999999987644 7888888
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001157 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
++.+|++|+.||.|++||+.++
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHH
T ss_pred cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998765
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-29 Score=289.78 Aligned_cols=254 Identities=19% Similarity=0.271 Sum_probs=217.8
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
.+.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 367899999999999999999999999999999998432 2233367899999999999987 77 899999999999
Q ss_pred EEEcCCCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcC-----
Q 001157 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1135)
Q Consensus 481 iwd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1135)
+||+.+++ .+..+.+|...|.+++|+|+.++.++++++.|+.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999997 77888899999999999987435899999999999999998874 3446678889999999999
Q ss_pred --------CCCEEEEEeeCCCCCceEEEEeCCCCc----eeEEeecccCCceeEEEEeCC---CCEEEEEecCCeEEEEE
Q 001157 552 --------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1135)
+++++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999874 7789999998764 4456777776 8999999999 89999999999999999
Q ss_pred CCCCe---eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 617 MDNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98864 2233333334557999999999999999999999999999755
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=288.60 Aligned_cols=257 Identities=15% Similarity=0.211 Sum_probs=213.0
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCC--ccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++..+. |.+.|++++|+|+|+ +|++|+.||.|+|||+.. ++.+. .+.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEE
Confidence 344555 899999999999998 788999999999999984 33322 2668999999999
Q ss_pred EcCC--CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEEcCCCe--e
Q 001157 416 WGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--K 489 (1135)
Q Consensus 416 ~spd--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~ 489 (1135)
|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 99999999999999999998752 123367789999999999999 88 89999999999999998873 4
Q ss_pred EEEecCCCCCeEEEEeccCC-----------CccEEEEEEcCCeEEEEeCCCCCce----EEecCCCCeEEEEEEcCC--
Q 001157 490 QYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD-- 552 (1135)
Q Consensus 490 ~~~l~~h~~~v~~l~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~-- 552 (1135)
...+.+|...|.+++|+|.. ++.++++++.||.|++||+++.... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999999842 4589999999999999999876543 467778999999999999
Q ss_pred -CCEEEEEeeCCCCCceEEEEeCCCCc---eeEEee--cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeee
Q 001157 553 -GTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS--GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 553 -~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+++|++++. ++.|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++......
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 889999874 7889999998864 222222 2444 7999999999999999999999999999855433
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.8e-29 Score=284.40 Aligned_cols=260 Identities=11% Similarity=0.151 Sum_probs=218.6
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~ 422 (1135)
|.+.|++++|+|+|+ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+++
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCCE
Confidence 889999999999998 789999999999999987643211 0112568999999999999 6999
Q ss_pred EEEEeCCCeEEEEEcCCCCc------eeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 423 LGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~------~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999988642 1334467789999999999999 88 89999999999999999887554332
Q ss_pred -------------CCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCC----C
Q 001157 495 -------------GHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----T 554 (1135)
Q Consensus 495 -------------~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~----~ 554 (1135)
+|...+.+++|+|.. ++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 688999999999861 248999999999998888777665 55677888999999999998 7
Q ss_pred EEEEEeeCCCCCceEEEEeCCCC----------------------------------------------ceeEEeecccC
Q 001157 555 RLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFRK 588 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~~ 588 (1135)
+|++++. ++.|++||++++ +.+..+.+|..
T Consensus 232 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 232 LIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp EEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred EEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 8888874 788999999865 56677777776
Q ss_pred CceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 308 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 308 -EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred -cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 89999999999999999999999999999887665543
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-29 Score=282.35 Aligned_cols=249 Identities=10% Similarity=-0.029 Sum_probs=210.6
Q ss_pred ccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEE
Q 001157 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|.+.|.+++|+|++++|++++.|+.|++|++.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987733333355689999999999999872 378999999999999
Q ss_pred c-CCCeeEEEecC--CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC---------CCceEEecCCCCeEEEEEEcC
Q 001157 484 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~-~~~~~~~~l~~--h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1135)
+ .+++. ..+.+ |...|.+++|+| + .++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 78888 999999999998 4 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCC-Cce-eEEeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCC------ee
Q 001157 552 DGTRLFSCGTSKEGESHLVEWNESE-GAI-KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------NM 622 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~ 622 (1135)
++ +++++. ++.|++||+++ +.. ...........+.+++|+| +++++++++.||.|++|++... +.
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 88 777663 78899999988 553 2223333333899999999 9999999999999999999887 77
Q ss_pred eEEEeCCCC-------CCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 623 LTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 788876643 347999999999999999999999999999877
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=284.65 Aligned_cols=300 Identities=12% Similarity=0.148 Sum_probs=236.4
Q ss_pred EEcCCCeeEEEecCCCCCeEEEEeccCC-CccEEEEEEcCCeEEEEeCCC-CCce-EEecCCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDY-LGSR-VDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~l~~h~~~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|+....+.+..+.+|...|++++|+|+. +|.+|++++.||.|++||+.+ +... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 3445666778889999999999999862 248999999999999999997 4443 577789999999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEE--eCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF--DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++. ++.|++||+.+++.+. +..|.. .|.+++| ++++++|++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQ-IAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEE-EEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCcee-eccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 874 7889999999988776 445555 8999999 8999999999999999999999999999888653 344
Q ss_pred eEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCC
Q 001157 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1135)
++.+. +..+++++.++.+++|++.............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------------------------------ 210 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESP------------------------------------------ 210 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCS------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhcccc------------------------------------------
Confidence 45444 5688889999999999986552211111000
Q ss_pred CCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccccee
Q 001157 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i 796 (1135)
.
T Consensus 211 ------------------------------------------------------~------------------------- 211 (368)
T 3mmy_A 211 ------------------------------------------------------L------------------------- 211 (368)
T ss_dssp ------------------------------------------------------C-------------------------
T ss_pred ------------------------------------------------------c-------------------------
Confidence 0
Q ss_pred EEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCE----EEEEe-CCeEEEEeCCCc
Q 001157 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF 871 (1135)
Q Consensus 797 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~----la~~s-dg~i~iwd~~~~ 871 (1135)
...+.++++.++... +++++ ||.|++||+...
T Consensus 212 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 212 -------------------------------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -------------------------------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -------------------------------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 112223333333222 66666 788888888765
Q ss_pred ---eEEEEeeCCCC------------CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 872 ---KVMTMFMSPPP------------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 872 ---~~~~~~~~~~~------------~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
+.+..+.+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 45566666655 799999999 89999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCcc
Q 001157 937 NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
++|++++.|+..+.|++-..+
T Consensus 328 ~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp SCEEEEECCCSTTCGGGCCTT
T ss_pred CeEEEEecccccccccccCCC
Confidence 999999999876666655443
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.4e-29 Score=291.15 Aligned_cols=249 Identities=16% Similarity=0.223 Sum_probs=210.4
Q ss_pred CCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEec-CCCceEEEEEcCCCcEEEEEcC
Q 001157 409 ISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la-~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|++++|+| +++ +|++|+.|+.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455789999876554 5788999999999664322 23335778999999999999 787 89999999999999999
Q ss_pred CC-------eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe--cCCCCeEEEEEEcCCCCEE
Q 001157 486 AG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 486 ~~-------~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 556 (1135)
++ +.+..+.+|...|.+++|+|++. .+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 66888999999999999998642 59999999999999999999888888 7899999999999999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEe-ecccCCceeEEEEeCCCCEEEEE---ecCCeEEEEECCCCee-eEEEeCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1135)
++++. ++.|++||+++++.+..+ ..|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 99874 788999999999999998 67776458999999999999998 7999999999998765 333332 22
Q ss_pred CCCcCeEEEecCCCEEEE-EeCCCcEEEEECCCcc
Q 001157 632 LPASPRLRFNKEGSLLAV-TTSDNGIKILANSDGV 665 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~~~ 665 (1135)
...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 346899999999999975 4579999999998773
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=287.87 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=234.9
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcc---ccccccceeeccccc----------------------------
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVWDISAA---------------------------- 395 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 395 (1135)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 56655 47899999999988 3321 221100
Q ss_pred ------------ccccccccccccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCceeeeeEeecCCCCeeEEE
Q 001157 396 ------------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 396 ------------~~~~~~~~~~~h~~~V~~v~~spdg~~l-a~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~ 460 (1135)
..........+|.+.|.+++|+|+|++| ++|+.||.|++||+. +++.+.... ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111124677789999999999996 889999999999999 777665321 136778999999
Q ss_pred EecCCCceEEEEEcCCCcEEEEEcCCCeeEE----EecCCCCCeEEEEeccC-CCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~l~~h~~~v~~l~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
|+|+++ +|++|+.|+.|++|++.++.... .+.+|...|.+++|+|+ ..+.+|++++.|++|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998877554 77889999999999997 224899999999999999999888777
Q ss_pred E-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc------------------------CCc
Q 001157 536 D-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRS 590 (1135)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1135)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 56889999999999 9999999974 7889999999999988886431 236
Q ss_pred eeEEEEeCCCCEEEEEe-cCCeEEEEEC--CCC---eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC------CCcEEE
Q 001157 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKI 658 (1135)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~i 658 (1135)
+..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999998 8999999999 555 666777765 36899999996544443332 456888
Q ss_pred EECCC
Q 001157 659 LANSD 663 (1135)
Q Consensus 659 w~~~~ 663 (1135)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=5.7e-28 Score=255.29 Aligned_cols=293 Identities=16% Similarity=0.163 Sum_probs=210.8
Q ss_pred eeEEEEe-cCCCceEEEEEcCCCcEEEEEcCCC---eeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 456 VNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 456 v~~l~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
+.++-|- +..+.+.+++++ ...|++|+..++ +.++++.+|+.+|..+.+.|+..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5556663 344555777777 569999999999 8999999999999999999876432222221
Q ss_pred CceEEecCCCCeEEEEEEcCC----CCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe
Q 001157 532 GSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1135)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 234568899999999 889998753 26667543 333333322
Q ss_pred --cCCeEEEEEC-CCCeeeEEEeCCCCCCCcCeEEEec---CCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCC
Q 001157 608 --DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 608 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ ++++++.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 4777777777 44666667766655 688899999 7899999999999999999999 66666654321
Q ss_pred CCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCce
Q 001157 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 761 (1135)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCC
Q 001157 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 841 (1135)
+...+.+++|+|+|+.+++++.+..
T Consensus 225 ---------~v~~v~~vafSpdG~~lvs~s~~~~---------------------------------------------- 249 (356)
T 2w18_A 225 ---------YQASVCHKAYSEMGLLFIVLSHPCA---------------------------------------------- 249 (356)
T ss_dssp -----------CCCEEEEEEETTEEEEEEC--------------------------------------------------
T ss_pred ---------ceeeeEEEEECCCCCEEEEeccCCC----------------------------------------------
Confidence 1234678899999988777654311
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe-----eCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 915 (1135)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++
T Consensus 250 ----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 250 ----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp ------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCS
T ss_pred ----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCc
Confidence 11467787 899999999999988776 366666544444 36799999999999999999999
Q ss_pred EeEeecCccCceE-EEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 916 VKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 916 ~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
++.++.+|...+. .++|||||++|+||+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999988765 5899999999999999999999986
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.5e-27 Score=270.25 Aligned_cols=328 Identities=11% Similarity=0.116 Sum_probs=258.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78899999999999999999999998765 48999998865 555 777799999999999888877776655 89999
Q ss_pred EEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE-EEEecCCeEEEEECCCCeeeEEE
Q 001157 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877653 36889999999999988887654 58899999999988 57778999999999999998888
Q ss_pred eCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccc
Q 001157 627 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1135)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~--------------------------------- 197 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK--------------------------------- 197 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE---------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe---------------------------------
Confidence 7653 46899999999887 56677899999998765 1110000
Q ss_pred cCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcc
Q 001157 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 785 (1135)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe----CC
Q 001157 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG 861 (1135)
Q Consensus 786 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s----dg 861 (1135)
+ ...+.+++|+|+|+++++++ ++
T Consensus 198 ----------------------------------------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 198 ----------------------------------------------------V-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp ----------------------------------------------------C-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ----------------------------------------------------c-CCCccceEECCCCCEEEEEecCcCCC
Confidence 1 33466788888888877774 58
Q ss_pred eEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEE-EEEeCCccEEEEEcccceEeEeecCccCceE---EEEEcCCC-
Q 001157 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLAFSPTL- 936 (1135)
Q Consensus 862 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~---~l~~s~d~- 936 (1135)
.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCC
T ss_pred cEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccc
Confidence 89999999999988888664 578999999 77665 6778899999999999999998877765421 12332211
Q ss_pred ---------------------CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 937 ---------------------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 937 ---------------------~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
..+...+.|..+++|++.++.... .......|+++|.+.+.
T Consensus 303 ~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 303 VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--------------SSSCEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--------------cCCCeEEeCCCceEEEE
Confidence 235566778899999998765211 11234679999998876
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.4e-28 Score=276.52 Aligned_cols=282 Identities=13% Similarity=0.143 Sum_probs=217.0
Q ss_pred EEEEec-CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~l~-h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
++.++. |.+.|++++|||||+ +||+|+.+ .++||++.+++.... .+...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~-~~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLK-SFEIYNVHPVAHIMS---------------------QEMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSS-EEEEEEETTEEEEEE---------------------EECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCC-EEEEEecCCcceeee---------------------eecCCeEEEEEc
Confidence 343444 889999999999998 78888866 478999987765432 122358899999
Q ss_pred CCCCEEE-EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC-eeEEEecC
Q 001157 418 PDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1135)
Q Consensus 418 pdg~~la-~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~ 495 (1135)
++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc
Confidence 9999885 56778999999999987665 443 66799999998764 33343 789999999988 76666654
Q ss_pred CCCCeEEEEeccCCCccEEEE--EEcCCeEEEEeCCCCC----------------ceEEecCCCCeEEEEEEcCCCCEEE
Q 001157 496 HEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
+...+++++ .+++. |+.||.|++||+.++. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 344455555 34555 6899999999998765 2677889999999999999999999
Q ss_pred EEeeCCCCCce-EEEEeCCCCceeEEee-c-ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeE--E-------
Q 001157 558 SCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T------- 625 (1135)
Q Consensus 558 ~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~------- 625 (1135)
+++. |++ |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 9984 887 9999999999999998 5 554 89999999999999999999999999997653211 1
Q ss_pred -----------EeCC-CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 626 -----------VDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 626 -----------~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+... ........++|+++++.|++++.||.+++|++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123477999999999999999999999998765
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2e-27 Score=272.37 Aligned_cols=277 Identities=10% Similarity=0.075 Sum_probs=227.3
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcC
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-a~~~~dg~i~iwd~~ 438 (1135)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999999876642 3334 458999999999987 566789999999999
Q ss_pred CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEE
Q 001157 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 517 (1135)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~ 517 (1135)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++ +.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 887654 444444 8999999999994 3456777899999999999998888754 568999998865 555 788
Q ss_pred EcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEe
Q 001157 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s 597 (1135)
+.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988877776654 45699999999999865442 47889999999998888776533 68899999
Q ss_pred CCCCEEEEEe---cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeeccC
Q 001157 598 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999987 68999999999999988887653 46889999999977 56678999999999988 66666554
Q ss_pred c
Q 001157 674 R 674 (1135)
Q Consensus 674 ~ 674 (1135)
+
T Consensus 285 ~ 285 (391)
T 1l0q_A 285 G 285 (391)
T ss_dssp S
T ss_pred C
Confidence 4
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2e-27 Score=276.43 Aligned_cols=336 Identities=11% Similarity=0.141 Sum_probs=256.9
Q ss_pred CeeEEE---EcCCCCEEEEEe--------------CCCeEEEEEcCC--CCceeeeeEeecCCCCeeEEEEecCCCceEE
Q 001157 410 SVNRCV---WGPDGLMLGVAF--------------SKHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1135)
Q Consensus 410 ~V~~v~---~spdg~~la~~~--------------~dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1135)
.+..++ |+|+++.++..+ .++.+.||.++. +. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 355566 666666555432 233234555433 32 2222344444 4567999999665 78
Q ss_pred EEEcCCCcEEEEEcCCCeeEE-----EecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEE
Q 001157 471 VTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 471 ~s~~~d~~i~iwd~~~~~~~~-----~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1135)
++++.|+.|++||+.+++.+. .+.+|...|.+++|++++ .++++++.|+.|++||+++++....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888899999999999999887 455899999999997754 8999999999999999999888888888888999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe--------cCCeEEEEEC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWDM 617 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~iwd~ 617 (1135)
+++|+|+++++++++. .++.|++||+++++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+
T Consensus 216 ~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp EEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred EEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 9999999999876652 47789999999999888877643 589999999999999987 4889999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1135)
.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 291 ~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~------------------------ 342 (433)
T 3bws_A 291 DKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP------------------------ 342 (433)
T ss_dssp TTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE------------------------
T ss_pred CCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec------------------------
Confidence 9998887764322 57889999999755 56688999999999866 2222111
Q ss_pred CCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceE
Q 001157 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
+...+.
T Consensus 343 --------------------------------------------------------------------------~~~~~~ 348 (433)
T 3bws_A 343 --------------------------------------------------------------------------VFDKPN 348 (433)
T ss_dssp --------------------------------------------------------------------------CSSSEE
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 223467
Q ss_pred EEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEE
Q 001157 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1135)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la 856 (1135)
+++|+|+|+.+++++.+.. .+ +..+++
T Consensus 349 ~~~~s~dg~~l~~~~~~~~----------------------------------------------~~-------~~~~~~ 375 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPN----------------------------------------------HP-------TEGYLK 375 (433)
T ss_dssp EEEECTTSSEEEEEECCCC----------------------------------------------CT-------TTCTTS
T ss_pred eEEEcCCCCEEEEEecCCC----------------------------------------------cc-------cccccc
Confidence 8889999987777654410 00 223445
Q ss_pred EEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC-CccEEEEEccc
Q 001157 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV 913 (1135)
Q Consensus 857 ~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~ 913 (1135)
+++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|++..
T Consensus 376 ~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 376 KGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 566 89999999999999988886 45799999999 8888887775 99999999864
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.5e-28 Score=271.62 Aligned_cols=313 Identities=8% Similarity=0.088 Sum_probs=214.8
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE-EE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AV 649 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 649 (1135)
+|++.+..++..+..|.. .|.+++|+|||++|++|+.++ +++|++.+++.......+ .+..+++.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEE
Confidence 466666777777777766 899999999999999988765 789999988777665433 47888999988887 45
Q ss_pred EeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCC
Q 001157 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1135)
Q Consensus 650 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1135)
++.|++|++||..++ +....+.
T Consensus 77 ~~~d~~v~iWd~~~~-~~~~~~~--------------------------------------------------------- 98 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKK-QDVSRIK--------------------------------------------------------- 98 (355)
T ss_dssp CSSTTEEEEEETTTT-EEEEEEE---------------------------------------------------------
T ss_pred ECCccEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 777899999999877 3332221
Q ss_pred CcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
+...|.++.++++.. ++ ..++.|++||+....
T Consensus 99 -----------------------------------------~~~~v~~v~~~~~~~--~~-~~~~~i~i~d~~~~~---- 130 (355)
T 3vu4_A 99 -----------------------------------------VDAPVKDLFLSREFI--VV-SYGDVISVFKFGNPW---- 130 (355)
T ss_dssp -----------------------------------------CSSCEEEEEECSSEE--EE-EETTEEEEEESSTTC----
T ss_pred -----------------------------------------CCCceEEEEEcCCEE--EE-EEcCEEEEEECCCCc----
Confidence 234678888888753 33 347789999875320
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEE--e-CCeEEEEeCCCce--------------
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA--S-GGKVSLFNMMTFK-------------- 872 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~--s-dg~i~iwd~~~~~-------------- 872 (1135)
..+.. + ..+...+++++ .+++++ + +|.|++||+.+++
T Consensus 131 -----------------~~~~~-~------~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 131 -----------------KRITD-D------IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp -----------------CBSSC-C------EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred -----------------eeeEE-e------ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 11110 0 11334566777 667664 4 8999999999865
Q ss_pred --EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCcc-EEEEEcccceEeEeec-C-ccCceEEEEEcCCCCeEEEEcCCCc
Q 001157 873 --VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS-VQIYNVRVDEVKTKLK-G-HQNRITGLAFSPTLNALVSSGADAQ 947 (1135)
Q Consensus 873 --~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~~l~-~-h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1135)
++..+.+|...|++++|+| ++++||+|+.||+ |++||+.+++++..+. + |...|++++|+||+++|++++.|++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp --CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred CcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 2678899999999999999 8999999999998 9999999999999998 6 9999999999999999999999999
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEcc
Q 001157 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1027 (1135)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~ 1027 (1135)
|++||+..+.......+.. + +.|.. + .. .|.. ..+.....+..+...++|++
T Consensus 264 v~iw~~~~~~~~~~~~~~~----------~----~~~~~--~--~~-----~~~~-----~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKG----------W----INMKY--F--QS-----EWSL-----CNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp EEEEESSCCSCCCSEETTT----------T----EECCC--C--CC-----SSCS-----EEEECCCCTTCCCCEEEESS
T ss_pred EEEEEccCCCCcccccccc----------e----eeccc--c--cc-----ccce-----eEEEeccCCCCCceEEEEeC
Confidence 9999998754222111110 0 00000 0 00 0111 00000111234457799999
Q ss_pred CCCEEEEEecCCcEEEEecCCCc
Q 001157 1028 DGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 1028 dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
||++|++++.||.+++|++..+.
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999999999999999987654
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.1e-27 Score=278.60 Aligned_cols=305 Identities=8% Similarity=0.047 Sum_probs=248.7
Q ss_pred CceeecCCc--ceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccc
Q 001157 327 PNVYSQDDL--TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~--~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|.++.. ..+.+..+.....+.+++|+|++ .++++++.++.|++||+.+++.+... ....+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~--------------~~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLS--------------PPEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEEC--------------CCHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeec--------------Ccccc
Confidence 455666653 33667777777778899999966 48888888999999999988765321 11124
Q ss_pred cccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc
Q 001157 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+|.+.|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 5789999999999999999999999999999999887665 56688999999999999983 3466778999999999
Q ss_pred CCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE--------cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEE
Q 001157 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 485 ~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s--------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1135)
.+++.+..+..+ ..+.+++|+|++ .++++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999998888754 458999998865 7888887 4889999999987665544 334478899999999877
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEec---------------CCeEEEEECCCCe
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMN 621 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1135)
+.++. .++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 66542 478999999999998888763 33 6889999999999988875 5799999999999
Q ss_pred eeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-CCcEEEEECC
Q 001157 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~ 662 (1135)
.+..+... ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 393 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888763 25789999999999998875 9999999975
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6e-28 Score=279.56 Aligned_cols=253 Identities=17% Similarity=0.278 Sum_probs=213.5
Q ss_pred cccccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC-------CceeeeeEeecCCCCeeEEEEecCCCceEEEEEc
Q 001157 403 LLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd-g~~la~~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~ 474 (1135)
...+|.+.|++++|+|+ +.+||+++.||.|++|++.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 35679999999999997 789999999999999999862 112333477899999999999999876 799999
Q ss_pred CCCcEEEEEcCCCee-------EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC---CceEEecCCCCeE
Q 001157 475 DDKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWC 544 (1135)
Q Consensus 475 ~d~~i~iwd~~~~~~-------~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v 544 (1135)
.||.|++||+.++.. ...+.+|...|.+++|+|.. +.+|++++.||.|++||+++. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 45677899999999999853 379999999999999999987 4566777899999
Q ss_pred EEEEEcCCCC-EEEEEeeCCCCCceEEEEeCCC-CceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCC--
Q 001157 545 TMMAYSADGT-RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN-- 619 (1135)
Q Consensus 545 ~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~-- 619 (1135)
.+++|+|++. .+++++. ++.|++||+++ +..+..+..|.. .|.+++|+|+++ .|++++.|+.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999998 5667763 78899999998 567888888876 899999999995 688899999999999987
Q ss_pred ------------CeeeEEEeCCCCCCCcCeEEEecCCC-EEEEEeCCCcEEEEECCCc
Q 001157 620 ------------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 620 ------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+.+.....| ...|.+++|+|+++ +|++++.||.|++|++.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2444444444 44799999999999 9999999999999998765
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.5e-28 Score=281.56 Aligned_cols=266 Identities=15% Similarity=0.239 Sum_probs=216.9
Q ss_pred EEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 339 ~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
....+.|.+.|++++|+|++..++|+|+.||.|+||++.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4556679999999999998556899999999999999976311100 0000001112568999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCCc----eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC---eeE
Q 001157 419 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 490 (1135)
Q Consensus 419 dg~-~la~~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 490 (1135)
+++ +|++|+.||.|++|++.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 999 999999999999999988432 2223466789999999999995444 8999999999999999987 577
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCce
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESH 568 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 568 (1135)
..+..|...|++++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999998753 4799999999999999998 455778888999999999999996 5667663 788
Q ss_pred EEEEeCCC--------------CceeEEeecccCCceeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 001157 569 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
|++||+.. ...+..+.+|.. .|.+++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999986 356677777766 899999999999 8999999999999998753
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-27 Score=274.58 Aligned_cols=286 Identities=9% Similarity=0.056 Sum_probs=227.2
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc---eeEEeecccC------------------------------
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK------------------------------ 588 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1135)
.++.+++|+++|++++++. ++.|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678899999999777664 5679999999998 6666653321
Q ss_pred -----------------------CceeEEEEeCCCCEE-EEEecCCeEEEEECC--CCeeeEEEeCCCCCCCcCeEEEec
Q 001157 589 -----------------------RSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 589 -----------------------~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 888899999999999 888888887544445789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCcchhee-eccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcc
Q 001157 643 EGSLLAVTTSDNGIKILANSDGVRLLR-MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 643 ~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
++++|++++.+|.+++|++.++.. .. ...
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~~~~------------------------------------------------- 189 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKFTQE------------------------------------------------- 189 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSCCCC-------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccccce-------------------------------------------------
Confidence 999999999999999999876621 10 000
Q ss_pred cCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCC---cceeeeecccceeEE
Q 001157 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS---GLSLLALASNAVHKL 798 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~~~dg~i~i 798 (1135)
. ..+|...|.+++|+|+ +++|++++.|+.|++
T Consensus 190 --------------------------------------~-------~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v 224 (450)
T 2vdu_B 190 --------------------------------------P-------ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI 224 (450)
T ss_dssp --------------------------------------C-------SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred --------------------------------------e-------eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence 0 0126678999999999 999999999999999
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEe
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 877 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~ 877 (1135)
||+.. +..+...+.+ | ...|.+++|+ ++++|++++ |++|++||+.+++++..+
T Consensus 225 wd~~~----------------------~~~~~~~~~~--h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 225 SHYPQ----------------------CFIVDKWLFG--H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp EEESC----------------------TTCEEEECCC--C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEE
T ss_pred EECCC----------------------CceeeeeecC--C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeee
Confidence 98743 2222222333 7 8899999999 999999999 999999999999998888
Q ss_pred eC-------------------------CCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEc--ccc---eEeEeecCccCc
Q 001157 878 MS-------------------------PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV--RVD---EVKTKLKGHQNR 926 (1135)
Q Consensus 878 ~~-------------------------~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~--~~~---~~~~~l~~h~~~ 926 (1135)
.. ....|.+++|+| ++++|++++ .|+.|++|++ .++ +.+..+.+| +.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~ 356 (450)
T 2vdu_B 279 DYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN 356 (450)
T ss_dssp ECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC
T ss_pred cchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc
Confidence 63 235689999999 899999998 8999999999 666 777888888 88
Q ss_pred eEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001157 927 ITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1135)
|.+++|+|++.++++++. +..|.+|.+..
T Consensus 357 v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 357 VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999996544444343 45688887754
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.7e-28 Score=270.78 Aligned_cols=280 Identities=10% Similarity=0.049 Sum_probs=217.0
Q ss_pred EEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC
Q 001157 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1135)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445676 89999999999999999999988886 566777888764 99999999999998642
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeC--CCCEEEEEecCCeEEEEEC
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~ 617 (1135)
.+.+||..+++.+..+...+...|.+++|+| +++++++++.||+|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 2778999988877777644444899999999 9999999999999999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
.+++.+.....+. ...+.+++|+|++.+|++|+.||.|++||+.++......+..
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------------------ 211 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------------------------ 211 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec------------------------
Confidence 9999876664432 236899999999999999999999999998776211011100
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
.| ..+|.+++|+|+|.+|++
T Consensus 212 -----------------------------------------------------------~h-~~~v~~l~fs~~g~~l~s 231 (343)
T 3lrv_A 212 -----------------------------------------------------------DE-EAKIKEVKFADNGYWMVV 231 (343)
T ss_dssp -----------------------------------------------------------CT-TSCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------------------cC-CCCEEEEEEeCCCCEEEE
Confidence 14 667888888888888888
Q ss_pred EeCCeEEEEeCCCceEEEEeeC---CCCCe--eEEEEeCCCCcEEEEEeC-CccEEEEEcccceEeEeecCccCceEEEE
Q 001157 858 ASGGKVSLFNMMTFKVMTMFMS---PPPAA--TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1135)
Q Consensus 858 ~sdg~i~iwd~~~~~~~~~~~~---~~~~v--~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1135)
+++++|++||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++
T Consensus 232 ~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~ 306 (343)
T 3lrv_A 232 ECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALC 306 (343)
T ss_dssp EESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECC
T ss_pred EeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEe
Confidence 8866888888887766544443 33334 4699999 8999999998 999999999765433332 5678888
Q ss_pred EcC---CCCeEEEEcCCCcEEEEeCCC
Q 001157 932 FSP---TLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 932 ~s~---d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
|++ +.+.+++++.|+.+.++-...
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEEECS
T ss_pred cCccccccceeEEEecCCceEEEEecC
Confidence 988 889999999999999886544
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-28 Score=301.04 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=215.6
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .....+.+|.++|++++|+++ +. +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985432 333477899999999999988 77 899999999999
Q ss_pred EEEcCCCe--eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcC-----
Q 001157 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1135)
Q Consensus 481 iwd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1135)
+||+.+++ .+..+.+|...|.+++|+|+.++.++++|+.||.|++||++... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788899999999999997435899999999999999998873 3456678889999999999
Q ss_pred --------CCCEEEEEeeCCCCCceEEEEeCCCC----ceeEEeecccCCceeEEEEeCC---CCEEEEEecCCeEEEEE
Q 001157 552 --------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1135)
+++++++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999874 788999999877 55667777776 8999999999 89999999999999999
Q ss_pred CCCCeee---EEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 617 MDNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234557999999999999999999999999999865
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.8e-28 Score=298.91 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=212.2
Q ss_pred CCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCC--CceEEEEeeCCCCCeeEEEEeCCC--CcEEEEEeCCccEEEEEcc
Q 001157 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQD--NNIIAIGMEDSSVQIYNVR 912 (1135)
Q Consensus 838 h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~--~~~lasg~~dg~v~iwd~~ 912 (1135)
| .+.|++++|+|+|++|++|+ ||+|++||+. +++.+..+.+|.+.|++++|+| + +++|++|+.||.|++||+.
T Consensus 8 H-~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 8 H-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp C-CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred C-cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 8 99999999999999999998 9999999998 5678888999999999999998 6 8999999999999999999
Q ss_pred cce--EeEeecCccCceEEEEEcCC--CCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC----
Q 001157 913 VDE--VKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN---- 984 (1135)
Q Consensus 913 ~~~--~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp---- 984 (1135)
+++ .+..+.+|...|++++|+|+ ++++++++.||+|++||+.++.......+ .+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence 987 77888999999999999999 99999999999999999998754433333 2333 6899999999
Q ss_pred ---------CCcEEEE-EECCcEEEEec-cCCcc-cccCCCCCCCCCeEEEEEccC---CCEEEEEecCCcEEEEecCCC
Q 001157 985 ---------DQTHLLV-VHESQISVYDS-KLECS-RSWSPKDALPAPISSAIYSCD---GLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 985 ---------dg~~l~~-~~d~~i~vwd~-~~~~~-~~~~~~~~h~~~i~~~~~s~d---g~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
++.++++ +.||.|++||+ ..... .......+|..+|++++|+|+ +++|++|+.||.|++||+.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5888888 56999999999 33221 112223567999999999999 999999999999999999987
Q ss_pred ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1050 RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
....... .....+|...+.+++|+| ++++|++|+.||.|++|++..+.
T Consensus 240 ~~~~~~~------~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKT------LLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCC------BSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeE------EeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 5322211 111236778899999999 88999999999999999998644
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-28 Score=269.10 Aligned_cols=267 Identities=8% Similarity=0.050 Sum_probs=212.3
Q ss_pred EeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 001157 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i 432 (1135)
.+.+++. ++++|+.||.|++||+.+++.+.. +. ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3446675 799999999999999999876643 11 356888889988 9999999999
Q ss_pred EEEEcC---------CCCceeeeeEeecCCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCeeEEEec-CCCCCe
Q 001157 433 HLYTYN---------PTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPV 500 (1135)
Q Consensus 433 ~iwd~~---------~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~h~~~v 500 (1135)
++|+.. +++.+.. ...+|...|.+++|+| +++ ++++|+.|++|++||+.+++.+..+. .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1226778999999999 998 89999999999999999999877664 355689
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce-EEecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+++|+|++ .+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 999998865 89999999999999999998887 77887 899999999999999999987 2379999999988
Q ss_pred eeEEeec---ccCCce--eEEEEeCCCCEEEEEec-CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec---CCCEEEE
Q 001157 579 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 649 (1135)
Q Consensus 579 ~~~~~~~---~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~ 649 (1135)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++.+....... .++..++|.+ ++..+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7665554 221 23 36999999999999988 999999999765543333 1456777887 8889999
Q ss_pred EeCCCcEEEEECC
Q 001157 650 TTSDNGIKILANS 662 (1135)
Q Consensus 650 ~~~dg~v~iw~~~ 662 (1135)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999988643
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.1e-27 Score=273.21 Aligned_cols=304 Identities=14% Similarity=0.103 Sum_probs=202.4
Q ss_pred CCCeeEEEe---ecCCCeEEEEEeCCCcEEEEEcCCcccccc-----ccceeeccccccc-----ccccccccccCCCee
Q 001157 346 GSNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAH-----KPFKVWDISAASM-----PLQNALLNDAAISVN 412 (1135)
Q Consensus 346 ~~~V~~~~f---spdg~~lla~gs~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 412 (1135)
+....++.| +|++..++++|. ++.|.+|+......... .....+....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345666777 455655777665 78899998753322111 0111111110000 000111234555555
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--eeeEeecCCCCeeEEEEec--------CCCceEEEEEcCCCcEEEE
Q 001157 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 413 ~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~--------d~~~~~l~s~~~d~~i~iw 482 (1135)
...+++++.+||+|+.|++|+|||+++++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66667788899999999999999999876532 2234679999999999998 777 89999999999999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-------------------------e
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------Y 537 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------------------------~ 537 (1135)
|+.++.++..+.+|...|.+++|+|++ ..+|++++.||+|++||+++++.... .
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999999888888999999999999864 25899999999999999987654332 1
Q ss_pred cCCCCeEEEEEEc-CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeE------------------EEEeC
Q 001157 538 DAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------------------VQFDT 598 (1135)
Q Consensus 538 ~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~s~ 598 (1135)
..+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2455577888886 89999999874 78899999988776665554432 2222 22333
Q ss_pred --CCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 599 --TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 599 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
++.++++|+.||+|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233566678999999999999988887766544 799999999999999998765 566654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-26 Score=244.93 Aligned_cols=297 Identities=15% Similarity=0.087 Sum_probs=198.9
Q ss_pred eeEEEEecCCCC-----eeEEEee-cCCCeEEEEEeCCCcEEEEEcCCc---cccccccceeeccccccccccccccccc
Q 001157 337 KTVVRTLNQGSN-----VMSMDFH-PQQQTILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 337 ~~~~~~l~h~~~-----V~~~~fs-pdg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
-+++..++.... +.++-|- ++.+.+.+.......|++|+..++ +++++ ...|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~ 85 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFA 85 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECC
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------Eecc
Confidence 355666663332 4445453 344434333334789999999988 44443 4556
Q ss_pred CCCeeEEEEcCCCCEEEEE-eCCC-eEEEEEcC--CC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEc--CCCcEE
Q 001157 408 AISVNRCVWGPDGLMLGVA-FSKH-IVHLYTYN--PT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIK 480 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~-~~dg-~i~iwd~~--~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~ 480 (1135)
+.+|..++++||-.-|++. -.+= .-.++.+. .. +.+.+...-.+|...|.++ ++++ ++.+++ .|+.|+
T Consensus 86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 86 EVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVE 160 (356)
T ss_dssp SSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEE
T ss_pred CceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEE
Confidence 6677777777754322221 1110 00111110 00 0011111112333344443 4554 455533 699999
Q ss_pred EEEc-CCCeeEEEecCCCCCeEEEEecc-CCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCC---eEEEEEEcCCCCE
Q 001157 481 VWDV-VAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTR 555 (1135)
Q Consensus 481 iwd~-~~~~~~~~l~~h~~~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~ 555 (1135)
+|++ .+|+.+..+.+|...+..++|++ .+++.+|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|++
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 9999 45888888889999999999999 67779999999999999999999999888876543 6778899999999
Q ss_pred EEEEee--------CCCCCceEEEEeCCCCceeEEe-----ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee
Q 001157 556 LFSCGT--------SKEGESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 556 l~~~~~--------~~~~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
+++++. .+..+++|++||..+++.+..+ .+|.. .+. ..+.++..+++++.|++|+|||+.++++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEE--EEEEETTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeE--ccccCCCEEEEEcCCCcEEEEECCCCcE
Confidence 866442 2245889999999999988765 24443 333 3333478999999999999999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+.++.+|... .+.+++|+|||++|++|+.|++|+|||+
T Consensus 318 l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999866431 2446899999999999999999999985
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.6e-27 Score=271.97 Aligned_cols=298 Identities=10% Similarity=0.004 Sum_probs=197.6
Q ss_pred eCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCc-------cccCCCCCCCCCCCeeEEEeecCCC
Q 001157 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-------MTNDINESKPTEESAACIALSKNDS 853 (1135)
Q Consensus 781 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~~v~~l~~s~dg~ 853 (1135)
++++..+++.+.++.|.+|+............ ....+..|....... ..... ..| ........+++++.
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~ 102 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGL-TLQELFTIQTGLPTLHLSFSSSCSYSE--NLH-DGDGNVNSSPVYSL 102 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSE-EEEEEEEEECSSCEEEEEECTTCEEEC--C-----------CCEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCccccccc-ceeeeEEEecCCCeeeEeecCCccccc--ccc-CCCcceeecCCCCC
Confidence 56666688888889999998764332211111 111111221111100 00001 113 55566677788899
Q ss_pred EEEEEe-CCeEEEEeCCCceEEE-----EeeCCCCCeeEEEEeC-------CCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 854 YVMSAS-GGKVSLFNMMTFKVMT-----MFMSPPPAATFLAFHP-------QDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 854 ~la~~s-dg~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~sp-------~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
+||+++ |++|+|||+.++.... .+.+|.+.|.+++|+| .++++||+|+.|++|+|||+.++..+..+
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 999999 9999999999876543 3578999999999986 26789999999999999999999888888
Q ss_pred cCccCceEEEEEcCCCC-eEEEEcCCCcEEEEeCCCcccccceee--------------------ecCCCCCCCCCCcee
Q 001157 921 KGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFI--------------------QAPAGRQSPLVGETK 979 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~--------------------~~~~~~~~~~~~v~~ 979 (1135)
.+|...|.+++|+|++. +|++++.|++|++||+.+++....... ....+|. ..+..
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~v~~ 259 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA---SSLAN 259 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS---SSCSE
T ss_pred cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc---cccee
Confidence 88999999999999884 799999999999999998764322110 0112233 57788
Q ss_pred EEEC-CCCcEEEE-EECCcEEEEec-cCCcccccCCCCCCCCCeEEE------------------EEcc--CCCEEEEEe
Q 001157 980 VQFH-NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSA------------------IYSC--DGLLVYAGF 1036 (1135)
Q Consensus 980 ~~fs-pdg~~l~~-~~d~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~------------------~~s~--dg~~l~s~~ 1036 (1135)
+.|+ |||+.|++ +.|+++++||+ .......+.. |...+..+ .|+| ++.++++|+
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD---STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee---ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 8886 89999998 57999999999 4333332211 12222222 3332 445677888
Q ss_pred cCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1037 CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1037 ~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
.||.|++||+.+++.+..+. +|...|.+++|+| ||++||+++.|| +.+|++.
T Consensus 337 ~Dg~V~lwd~~~~~~~~~~~-----------~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 337 QHGLIQLINTYEKDSNSIPI-----------QLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTEEEEEETTCTTCCEEEE-----------ECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCcEEEEec-----------CCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 99999999999998765543 6678899999999 899999998655 6777664
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.3e-25 Score=263.02 Aligned_cols=324 Identities=12% Similarity=0.125 Sum_probs=253.9
Q ss_pred EEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeC--CCCCceEEe
Q 001157 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDY 537 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~--~~~~~~~~~ 537 (1135)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|++ ++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788887 899999999999999999999999984333 8899998865 89999999999999999 777766666
Q ss_pred cCCCCeEEEEEEcC----CCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc----------cCCceeEEEEeCCCCEE
Q 001157 538 DAPGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l 603 (1135)
. ....+..++|+| ||+++++++. .+++|.+||..+++++..+..+ ....+..+.++|++..+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 6 456789999999 9999998874 3678999999999999888752 23367889999987665
Q ss_pred E-EEecCCeEEEEECCCCeeeE--EEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeeccCcccccC
Q 001157 604 L-AAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 604 ~-~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 679 (1135)
+ +...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+....
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~---- 366 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGK---- 366 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS----
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCC----
Confidence 4 46689999999998876554 4432 23578899999999876554 5889999999887 3332221100
Q ss_pred CCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCC
Q 001157 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1135)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
..|
T Consensus 367 ----------------------------------------------------------------------------~ph- 369 (543)
T 1nir_A 367 ----------------------------------------------------------------------------TPH- 369 (543)
T ss_dssp ----------------------------------------------------------------------------SBC-
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 002
Q ss_pred CCCeeEEEeecC-CCEEEEEe--CCeEEEEeCCC-------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEe-------C
Q 001157 840 EESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------E 902 (1135)
Q Consensus 840 ~~~v~~l~~s~d-g~~la~~s--dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~-------~ 902 (1135)
.+....+ ++|+ |.+++++. |++|.+||+.+ +++++++.+|...+..++|+| ++++|++++ .
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCccc
Confidence 2222222 4566 55666664 68899999988 899999999998899999999 899999887 2
Q ss_pred CccEEEEEcccceEe-Eee--------cCccCceEEEEEcCCCCeEEEE-----cCCCcEEEEeCCCcccc
Q 001157 903 DSSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKL 959 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~-~~l--------~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~ 959 (1135)
+++|.+||+.+++.. ..+ ..+...+..++|+|||+.+..+ +.|+.|.|||.++++.+
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 679999999998876 443 4567889999999999988765 24799999999998843
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.3e-25 Score=263.06 Aligned_cols=335 Identities=11% Similarity=0.121 Sum_probs=252.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEc--CCCeeEEE
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYT 492 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~~ 492 (1135)
+|+|++.++++++.|++|.+||..+++.+. .+..+.. +.+++|+|||+ +|++++.|++|.+||+ .+++.+.+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g~~-~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYA-VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECSTT-EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecCcc-cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEEE
Confidence 388999999999999999999999988765 4552322 88999999999 8999999999999999 89999998
Q ss_pred ecCCCCCeEEEEecc----CCCccEEEEEE-cCCeEEEEeCCCCCceEEecCC-----------CCeEEEEEEcCCCCEE
Q 001157 493 FEGHEAPVYSVCPHH----KESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAP-----------GNWCTMMAYSADGTRL 556 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~----~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l 556 (1135)
+. +...+..++|+| ++ +++++++ .+++|.+||..+.+.+..+..+ ...+.++.++|++..+
T Consensus 218 i~-~g~~p~~va~sp~~~~dg--~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred Ee-cCCCcceEEeCCCcCCCC--CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 87 455679999987 54 7888887 5899999999998887776542 2378999999998887
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCC
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
++... +++.|.+||..+++.+. .+. + ...+..+.|+|+|+++++++ .+++|.+||..+++++..+.......
T Consensus 295 ~vs~~---~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 295 IVNVK---ETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp EEEET---TTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred EEEEC---CCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 76652 57899999998876544 333 2 22577899999999887655 68999999999999999887422111
Q ss_pred CcCeEE-EecC-CCEEEEEe-CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 634 ASPRLR-FNKE-GSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 634 ~v~~~~-~s~~-~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
.-..+. ++|+ +.+++++. .|++|.+|++.+.. |...
T Consensus 370 ~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~~--------------------------------- 408 (543)
T 1nir_A 370 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQY--------------------------------- 408 (543)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------CTTT---------------------------------
T ss_pred CCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------Cchh---------------------------------
Confidence 112233 4676 66666665 57999999987631 1000
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
-|. .+..+
T Consensus 409 --------------------------------------~~~----------------------~v~~l------------ 416 (543)
T 1nir_A 409 --------------------------------------AWK----------------------KVAEL------------ 416 (543)
T ss_dssp --------------------------------------BTS----------------------EEEEE------------
T ss_pred --------------------------------------cCe----------------------EEEEE------------
Confidence 000 00000
Q ss_pred cccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--------CCe
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--------GGK 862 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--------dg~ 862 (1135)
.. | ...+..++++|||++|++++ +++
T Consensus 417 -------------------------------------------~~--~-g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 417 -------------------------------------------QG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp -------------------------------------------EC--S-CSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred -------------------------------------------Ec--C-CCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 00 2 34456688899999998886 468
Q ss_pred EEEEeCCCceEE-EEe--------eCCCCCeeEEEEeCCCCcEEEEEe-----CCccEEEEEcccceEeEeecCc
Q 001157 863 VSLFNMMTFKVM-TMF--------MSPPPAATFLAFHPQDNNIIAIGM-----EDSSVQIYNVRVDEVKTKLKGH 923 (1135)
Q Consensus 863 i~iwd~~~~~~~-~~~--------~~~~~~v~~l~~sp~~~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h 923 (1135)
|.+||+.+++.. ..+ ..+...+..++|+| +|+.|.++. .|+.|.|||..|++++.+++.+
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 999999988776 443 34667899999999 788777663 4799999999999999998865
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2e-24 Score=247.66 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=220.8
Q ss_pred CCeeEEEeecCCCeEEEEEe----CCC----cEEEEEc--CCccccccccceeecccccccccccccccccCCCeeEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888899999988888886 467 8999999 8887653211 4456666777666
Q ss_pred cC--------------CCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 417 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 417 sp--------------dg~~la~~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26677776654 799999998543 33 5667999999999999999 78888877
Q ss_pred C---cEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEE-EEEcCCe--EEEEeCCCCCceEEecCCCCeEEEEEEc
Q 001157 477 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 477 ~---~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1135)
+ .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999999865 6666 6666655 99999987654 5666777889999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC---CeEEEEECCCCeeeEEEe
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 627 (1135)
|||++|++++. .++...|++||+.+++. ..+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCE-EEEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998763 22345799999988764 33444433 78889999999999988754 58999999988764 333
Q ss_pred CCCCCCCcCeEEEecCCCEEEEEeCCC---cEEEEECCCc
Q 001157 628 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDG 664 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg---~v~iw~~~~~ 664 (1135)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 32 2 688999999999999988877 7999998644
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6.2e-24 Score=243.51 Aligned_cols=306 Identities=14% Similarity=0.144 Sum_probs=230.9
Q ss_pred CCCeeEEEEecCCCceEEEEEc----CCC----cEEEEEc--CCCeeE--EEecCCCCCeEEEEeccCC-----------
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 509 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~l~~h~~~v~~l~~~~~~----------- 509 (1135)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788889999876 676776 567 8999999 899887 4588898888887766420
Q ss_pred -CccEEEEEEcC------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 510 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 510 -~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 45566677888999999999999999987532 3468999999998875 4
Q ss_pred eecccCCceeEEEEeCCCCEEE-EEecCC--eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-CC--cE
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 656 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~v 656 (1135)
+..+.. .+.+++|+|||++|+ +++.++ .|++||+.+++. ..+..+ ...+.+++|+|||+.|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCcEE
Confidence 555554 789999999999888 555555 499999998876 344333 346889999999999988876 44 45
Q ss_pred EEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccC
Q 001157 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
++||+.++. .. .+
T Consensus 294 ~~~d~~~~~-~~-~l----------------------------------------------------------------- 306 (415)
T 2hqs_A 294 YKVNINGGA-PQ-RI----------------------------------------------------------------- 306 (415)
T ss_dssp EEEETTSSC-CE-EC-----------------------------------------------------------------
T ss_pred EEEECCCCC-EE-EE-----------------------------------------------------------------
Confidence 566655441 00 00
Q ss_pred ccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccc
Q 001157 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 816 (1135)
T Consensus 307 -------------------------------------------------------------------------------- 306 (415)
T 2hqs_A 307 -------------------------------------------------------------------------------- 306 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-C---CeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC
Q 001157 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 892 (1135)
.. | ...+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+|
T Consensus 307 -----------------~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 307 -----------------TW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP- 363 (415)
T ss_dssp -----------------CC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-
T ss_pred -----------------ec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-
Confidence 00 1 33466788888888888776 3 47999999988774 455554 899999999
Q ss_pred CCcEEEEEeCCc---cEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 893 DNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 893 ~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
++++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 889888888777 79999987 555788999999999999999754
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.8e-23 Score=261.11 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=214.3
Q ss_pred CCCeeEEEeecCCCeEEEEEeC-CC-----cEEEEEcCCccccccccceeec-----ccccccccccccccccCCCeeEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWD-----ISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
...|.+++|||||+ .|++++. |+ .|++||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 34799999999998 5666666 88 8999999988754321000000 00000000000000001348899
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 415 VWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 999999999872 233 4557888899999999999 788777 56999999999887655
Q ss_pred ecCCCCC----------------eEEEEeccCCCccEEEEEEcCC---------------------------------eE
Q 001157 493 FEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG---------------------------------KI 523 (1135)
Q Consensus 493 l~~h~~~----------------v~~l~~~~~~~~~~l~s~s~dg---------------------------------~i 523 (1135)
...+... +.+++|+|++ ++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444432 4778998865 8888888776 88
Q ss_pred EEEeCCC-CCceEEec--CCCCeEEEEEEcCCCCEEEEEee-CCCCCceEEEEeCCCCceeEEeecccCC---ceeEEEE
Q 001157 524 KAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SLGVVQF 596 (1135)
Q Consensus 524 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~ 596 (1135)
++||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 9999987 66554433 35678999999 99999997764 2234678999999999888777665532 2457899
Q ss_pred eCCCCEEEEEecCCeEEEEECC-CCeeeEEEeCCCCCCCcCeE-EEecCCCEEEEEe-CCC--cEEEEECCC
Q 001157 597 DTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTT-SDN--GIKILANSD 663 (1135)
Q Consensus 597 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~-~dg--~v~iw~~~~ 663 (1135)
+|||+++++++.+|.+++|.+. +++ ...+..+ ...+..+ .|+|+|+.|+..+ .++ .+++|++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899988888765 344 4444433 3356666 5999999776544 454 889998753
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.9e-23 Score=259.34 Aligned_cols=328 Identities=10% Similarity=0.017 Sum_probs=238.3
Q ss_pred CCCeeEEEEecCCCceEEEEEcC-CC-----cEEEEEcCCCeeEEEecCCCC------------------------CeEE
Q 001157 453 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEA------------------------PVYS 502 (1135)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~l~~h~~------------------------~v~~ 502 (1135)
...+.+++|||||+ +|++++. |+ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 999999999988776654433 3788
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCC--ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
++|+|++ ++|++++. +.|++||+.++. ....+..+...+..++|||||++|+.++ ++.|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 8998865 88888886 999999998873 4445666777899999999999999886 457999999988776
Q ss_pred EEeecccCC---------------ceeEEEEeCCCCEEEEEecCC---------------------------------eE
Q 001157 581 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 612 (1135)
Q Consensus 581 ~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~dg---------------------------------~i 612 (1135)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 554433321 146799999999999987665 88
Q ss_pred EEEECCC-CeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC-----CCcEEEEECCCcchheeeccCcccccCCCCCCCC
Q 001157 613 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 613 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++ +....+..+.
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~----------- 332 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETS----------- 332 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEEC-----------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCC-----------
Confidence 9999988 776544332123346789999 99999987764 456777777655 1111110000
Q ss_pred cCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEc
Q 001157 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 333 -------------------------------------------------------------------------------- 332 (741)
T 2ecf_A 333 -------------------------------------------------------------------------------- 332 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE
Q 001157 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l 846 (1135)
++ . -..+..+
T Consensus 333 --------------------------~~-------------------------------------------~-~~~~~~~ 342 (741)
T 2ecf_A 333 --------------------------PT-------------------------------------------W-VPLHNSL 342 (741)
T ss_dssp --------------------------SS-------------------------------------------C-CCCCSCC
T ss_pred --------------------------CC-------------------------------------------c-CCcCCce
Confidence 00 0 1123357
Q ss_pred EeecCCCEEEEEe-CCeEEEEeCC-CceEEEEeeCCCCCeeEE-EEeCCCCcEE-EEEeCCc--cEEEEEccc-ceEeEe
Q 001157 847 ALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNII-AIGMEDS--SVQIYNVRV-DEVKTK 919 (1135)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~sp~~~~~l-asg~~dg--~v~iwd~~~-~~~~~~ 919 (1135)
+|+|||+++++++ +|.++||.+. +++ ...+..|...+..+ .|+| +++.| ++++.++ .++||++.. ++....
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 8888888777776 6766666554 344 67777788888887 5999 67655 4555565 899999874 555667
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCC----CcEEEEeCCCc
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 956 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iWd~~~~ 956 (1135)
+.. ...+..++|||||++|+....+ ..+.+|+...+
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 765 5678899999999988866543 46889988654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.1e-23 Score=259.82 Aligned_cols=288 Identities=9% Similarity=0.083 Sum_probs=212.3
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC---CeeEEEEcCCCCEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLG 424 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~la 424 (1135)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 578899999998 5665 6799999999998875432 334443 499999999999999
Q ss_pred EEeCC---------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC
Q 001157 425 VAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 425 ~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99774 7889999999875 22223334556689999999999 6777775 7999999999887766655
Q ss_pred CCCCe------------------EEEEeccCCCccEEEEEEcCC----------------------------------eE
Q 001157 496 HEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------KI 523 (1135)
Q Consensus 496 h~~~v------------------~~l~~~~~~~~~~l~s~s~dg----------------------------------~i 523 (1135)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 789998865 8888887653 79
Q ss_pred EEEeCCCCCceEEecCC------CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce----eE
Q 001157 524 KAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GV 593 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 593 (1135)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999988765555544 568899999999998877765444567899999999988776655433233 37
Q ss_pred EEEeCCCCEEEEE--ecCC------eEEEEE-CCCCee--eEEEeCCCCCCCcCe-EEEecCCCEEEEEeCC---CcEEE
Q 001157 594 VQFDTTRNRFLAA--GDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIKI 658 (1135)
Q Consensus 594 ~~~s~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d---g~v~i 658 (1135)
++|+|||+.|+.. ..++ .|++|| ..+++. ...+... + ..+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999977754 4666 577777 344441 3333221 1 13333 6899999999876655 78999
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 987643
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1e-21 Score=218.86 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=208.3
Q ss_pred EEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC-CC
Q 001157 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 430 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~-dg 430 (1135)
..|.++++.++++++.++.|.+||..+++.+.. +..+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999876543 22244456 9999999997777665 88
Q ss_pred eEEEEEcCCCCc-eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC---cEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 431 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 431 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~---~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..++ .|.+||+.+++.+..+.. .....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC
Confidence 999999999876 33 4455666666699999999 677555443 899999999999888764 4456899998
Q ss_pred cCCCccEEEEEEcCCe-EEEEeCCCCCceE----EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--
Q 001157 507 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 579 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1135)
|++. .++++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8762 25555566688 9999988655432 22234456899999999998876653 477899999999988
Q ss_pred -eEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCee--eEEEeCC--CCCCC---cCeEEEecCCCEEEEE
Q 001157 580 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLPA---SPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 580 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~~~~s~~~~~l~~~ 650 (1135)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|||++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776543 577899999999877655 578899999999887 4444322 11112 2458999999988766
Q ss_pred eC-CCcEEEEECCCc
Q 001157 651 TS-DNGIKILANSDG 664 (1135)
Q Consensus 651 ~~-dg~v~iw~~~~~ 664 (1135)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.1e-22 Score=253.21 Aligned_cols=383 Identities=11% Similarity=0.066 Sum_probs=251.5
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC--ceeEEEEeCCCCEEEEEecC---------Ce
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDE---------FQ 611 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d---------g~ 611 (1135)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3668999999999888777766431 38899999999999998764 78
Q ss_pred EEEEECCCCeeeEEEeC-CCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 612 IKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++ +..+....+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~------------ 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGV------------ 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTT------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCc------------
Confidence 89999999876 33332 222234789999999999999886 79999999887 3333222211000
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1135)
+..+ +.-|-... .
T Consensus 158 ------------------------------------------------~~~g----~~~~v~~e---------------e 170 (723)
T 1xfd_A 158 ------------------------------------------------IYNG----LSDWLYEE---------------E 170 (723)
T ss_dssp ------------------------------------------------EEEE----ECCHHHHH---------------T
T ss_pred ------------------------------------------------eECc----ccceeEEE---------------E
Confidence 0000 00000000 0
Q ss_pred CCCceEEEEEeCCcceeeeeccc-ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 771 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
-...+.+++|||||+.|+.++.+ +.+.+|++.... +. + ...+..+.|+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~~----------~-~~~~~~~~~~ 219 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------GS----------I-YPTVKPYHYP 219 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------SS----------S-SCCCEEEECC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------Cc----------C-CCcceeccCC
Confidence 11245789999999999888765 467777653110 00 1 3347789999
Q ss_pred cCCCEEEEEeCCeEEEEeCCCceEEEEeeCC------CCCeeEEEEeCCCCcEEEEEeC----CccEEEEEcccceEeEe
Q 001157 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 850 ~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~~~~~~~~~ 919 (1135)
++|.. ..+..|++||+.+++....+..+ ...+..++||| |+++|++... +..|++||+.++++...
T Consensus 220 ~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88863 12468999999998866666654 56789999999 8888877653 36899999999987776
Q ss_pred ecCc-cCce----EEEEEcCCCCeEEE--EcCCC------cEEEEe-CCCcccccceeeecCCCCCCCCCCcee-EEECC
Q 001157 920 LKGH-QNRI----TGLAFSPTLNALVS--SGADA------QLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETK-VQFHN 984 (1135)
Q Consensus 920 l~~h-~~~i----~~l~~s~d~~~l~s--~~~D~------~i~iWd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~fsp 984 (1135)
+..+ ...+ ..++|||||+.|+. ...++ .|.+|| ..+++......+. .++ ..+.. ++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~----~~~~~~~~~sp 369 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD----WDVTKILAYDE 369 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS----SCEEEEEEEET
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCC----eEEEeeeEEcC
Confidence 6543 3333 37899999998775 44666 577777 3443300001111 111 23444 69999
Q ss_pred CCcEEEE-EEC---CcEEEEecc--CC-cccccCCCCCCCCCeEEEEEccCCCEEEEEec-CC--cEEEEecCCCceee
Q 001157 985 DQTHLLV-VHE---SQISVYDSK--LE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DG--AIGVFDAETLRFRC 1053 (1135)
Q Consensus 985 dg~~l~~-~~d---~~i~vwd~~--~~-~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~-dg--~V~vwd~~~~~~~~ 1053 (1135)
||+.|+. +.+ +.+.+|++. +. ....+.....|...+..++|||||++|+.... .+ .+.+++..++..+.
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence 9999987 443 779999983 22 22222221124677899999999998886543 22 24455665555443
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.2e-21 Score=243.08 Aligned_cols=237 Identities=10% Similarity=-0.017 Sum_probs=168.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eeeeEeecCC-----------------CCeeEEEEecCCCceEEEE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~~s~d~~~~~l~s 472 (1135)
+..+.|+ |+.+++++.++ | +||+.+++.+ .. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 5667888 77778888888 8 9999998763 32 22222 56999999999 5 3444
Q ss_pred EcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-----CCceEEecCCCCe----
Q 001157 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 543 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~---- 543 (1135)
+. |+.|++||+.+++... +..+...+.+++|+|++ +.|+++ .|+.|++||+.+ ++...........
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 5999999999887654 44577788899998865 788884 789999999988 6555433333332
Q ss_pred ----------EEEEEEcCCCCEEEEEeeCC-----------------------------CCCceEEEEeCCCCceeEEee
Q 001157 544 ----------CTMMAYSADGTRLFSCGTSK-----------------------------EGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 544 ----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+.+++|+|||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135789999999888655443
Q ss_pred c-ccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEEe-C-C-CCCCCcCeEEEec--CCCEEEEEeCC
Q 001157 585 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-A-D-GGLPASPRLRFNK--EGSLLAVTTSD 653 (1135)
Q Consensus 585 ~-~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~-~-~~~~~v~~~~~s~--~~~~l~~~~~d 653 (1135)
. .....+..++|+|||++|++++.++ .|++||+.+++....+. . . .....+..++|+| ||++++++..+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688999999999999987665 89999999984333332 1 1 1112346789999 99999988888
Q ss_pred CcEEEEECC
Q 001157 654 NGIKILANS 662 (1135)
Q Consensus 654 g~v~iw~~~ 662 (1135)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=4.1e-22 Score=247.20 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=171.4
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCC-----ceEEEEeeCCCCC--------------eeEEEEeCCCCcEEEEEe-
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPA--------------ATFLAFHPQDNNIIAIGM- 901 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~l~~sp~~~~~lasg~- 901 (1135)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 34457788888888776678888888877 6655444333332 58999999 899999887
Q ss_pred --------------------------------CCccEEEEEcccceEeEeec--CccCceEEEEEcCCCCeEEEEcCCC-
Q 001157 902 --------------------------------EDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSPTLNALVSSGADA- 946 (1135)
Q Consensus 902 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~- 946 (1135)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999988655442 5777899999999999999887775
Q ss_pred ----cEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC--CCcEEEEE-ECCcEEEEec--cCCcccccCCCCCCC
Q 001157 947 ----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN--DQTHLLVV-HESQISVYDS--KLECSRSWSPKDALP 1017 (1135)
Q Consensus 947 ----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp--dg~~l~~~-~d~~i~vwd~--~~~~~~~~~~~~~h~ 1017 (1135)
.|++||+.+++.............. ..+..++|+| ||++++++ .++.+++|++ +++.+..+. .|.
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~~~ 354 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT---KGE 354 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC---CSS
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC---CCC
Confidence 8999999988322221111111110 1246789999 99988875 5778888877 455554443 336
Q ss_pred CCeEE-EEEccCCCEEEEEec-CC----cEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEec
Q 001157 1018 APISS-AIYSCDGLLVYAGFC-DG----AIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1018 ~~i~~-~~~s~dg~~l~s~~~-dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~ 1091 (1135)
..+.+ ++|+|||+.|+.++. ++ .|+.||+.+++ ...+ .|...+..++|+| |+++|+.++.
T Consensus 355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l------------~~~~~~~~~~~sp-dg~~l~~~~~ 420 (706)
T 2z3z_A 355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL------------TPESGMHRTQLSP-DGSAIIDIFQ 420 (706)
T ss_dssp SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES------------CCSSSEEEEEECT-TSSEEEEEEE
T ss_pred eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec------------cCCCceEEEEECC-CCCEEEEEec
Confidence 67776 899999998876554 44 67777887765 3333 2334577899999 7777776654
Q ss_pred C----CcEEEEecCCCc
Q 001157 1092 D----GAVHVVEPSDAE 1104 (1135)
Q Consensus 1092 D----g~i~lW~~~~~~ 1104 (1135)
+ +.|++||+.+++
T Consensus 421 ~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 421 SPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CSSCSCEEEEEESSSCE
T ss_pred CCCCCcEEEEEECCCCe
Confidence 4 569999998775
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=5.7e-21 Score=215.10 Aligned_cols=277 Identities=11% Similarity=0.092 Sum_probs=217.1
Q ss_pred EecCCCCeeEEEeecCCCeEEEEEeC------CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEE
Q 001157 342 TLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 342 ~l~h~~~V~~~~fspdg~~lla~gs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.......+..++|+|+|+++++++.. ++.|.+||..+++.+.. + .....+.+++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~-~~~~~~~~~~ 95 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------I-HNDLKPFGAT 95 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------E-EESSCCCSEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------E-ecCCCcceEE
Confidence 33455689999999999865555433 67899999998876542 1 1234578899
Q ss_pred EcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCC---------CeeEEEEecCCCceEEEEE--cCCCcEEEEE
Q 001157 416 WGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTC--GDDKMIKVWD 483 (1135)
Q Consensus 416 ~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~d~~~~~l~s~--~~d~~i~iwd 483 (1135)
|+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++. ++++ +.++.|.+||
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWVVD 170 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEEEc
Confidence 99999966655 557999999999987655 3333322 2788999999994 4443 4688999999
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC----CCCeEEEEEEcCCCCEEEEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+.+++.+..+..+...+.+++|+|++ +++++++.++.|.+||..+++....+.. +...+..++|+|++++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCCCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 99999998887666678889998865 7899999999999999998887766654 44568889999999988877
Q ss_pred eeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeE
Q 001157 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
.. .++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+.++
T Consensus 249 ~~---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~ 319 (353)
T 3vgz_A 249 DS---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSL 319 (353)
T ss_dssp ES---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEE
T ss_pred eC---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeE
Confidence 53 46889999999999888887643 24589999999776665 78999999999999988887543 46899
Q ss_pred EEecCCCEEEEEeCCC
Q 001157 639 RFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 639 ~~s~~~~~l~~~~~dg 654 (1135)
+|+|+|++|+++..++
T Consensus 320 ~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQK 335 (353)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEccc
Confidence 9999999887776653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=5.3e-21 Score=214.32 Aligned_cols=241 Identities=13% Similarity=0.141 Sum_probs=172.8
Q ss_pred CCCeeEEEeecCCCEEEEEe-C-CeEEEEeCC--Cce--EEEEeeCCCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEc-
Q 001157 840 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV- 911 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~- 911 (1135)
...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 56788899999999998887 4 899999997 554 445555444 889999999 788776655 4889999999
Q ss_pred --ccceEeEeecCccCceEEEEEcCCCCeEEEEc-CCCcEEEEeCCC-cccccce--eeecCCCCCCCCCCceeEEECCC
Q 001157 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 912 --~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
.+++.+..+..+ ..+.+++|+|+|++|++++ .++.|++||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 455566666654 4588999999999888776 899999999987 5432211 1222222 35788999999
Q ss_pred CcEEEEE--ECCcEEEEeccC--Ccc---cc---cCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEecC--CC--c
Q 001157 986 QTHLLVV--HESQISVYDSKL--ECS---RS---WSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAE--TL--R 1050 (1135)
Q Consensus 986 g~~l~~~--~d~~i~vwd~~~--~~~---~~---~~~~~~h~~~i~~~~~s~dg~~l~s~-~~dg~V~vwd~~--~~--~ 1050 (1135)
|++++++ .++.|.+|++.. ... .. ..........+.+++|+|||++|+++ ..++.|.+||+. ++ +
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 9988774 478999999932 221 11 11111123467789999999988754 479999999998 33 3
Q ss_pred eeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEe-cCCcEEEEecC
Q 001157 1051 FRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1101 (1135)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~-~Dg~i~lW~~~ 1101 (1135)
.+..+. .+ ..+..++|+| ++++|++++ .|+.|.+|++.
T Consensus 269 ~~~~~~-----------~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQP-----------TE-TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEE-----------CS-SSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred Eeeeec-----------CC-CccceEEECC-CCCEEEEecCCCCeEEEEEEc
Confidence 333221 22 2377899999 778777777 68999999665
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.2e-20 Score=206.99 Aligned_cols=273 Identities=13% Similarity=0.130 Sum_probs=194.1
Q ss_pred CeEEEEEeCCCcEEEEEcCC-ccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC-CeEEEEE
Q 001157 359 QTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLYT 436 (1135)
Q Consensus 359 ~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d-g~i~iwd 436 (1135)
+.++++++.|+.|.+|++.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 34666668899999999963 321110 012467789999999999999998886 9999999
Q ss_pred cC--CCCceeeeeEeecCCCCeeEEEEecCCCceEEE-EEcCCCcEEEEEcC---CCeeEEEecCCCCCeEEEEeccCCC
Q 001157 437 YN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 437 ~~--~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-s~~~d~~i~iwd~~---~~~~~~~l~~h~~~v~~l~~~~~~~ 510 (1135)
+. +++ ......+..+. .+.+++|+|+++ +++ ++..++.|.+||+. +++.+..+..+ ..+.+++|+|++
T Consensus 67 ~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg- 140 (343)
T 1ri6_A 67 IAPDDGA-LTFAAESALPG-SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN- 140 (343)
T ss_dssp ECTTTCC-EEEEEEEECSS-CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-
T ss_pred ecCCCCc-eeeccccccCC-CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-
Confidence 98 444 22233444444 789999999999 554 44558899999994 44455555543 458889998865
Q ss_pred ccEEEEEE-cCCeEEEEeCCC-CCceE----EecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC--Cce--
Q 001157 511 IQFIFSTA-IDGKIKAWLYDY-LGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI-- 579 (1135)
Q Consensus 511 ~~~l~s~s-~dg~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~-- 579 (1135)
+++++++ .++.|++||+.+ +.... .... ....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 141 -~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 141 -RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred -CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 6777776 899999999987 43321 2222 3457889999999998877652 477899999953 433
Q ss_pred eEEeeccc-----CCceeEEEEeCCCCEEEEEe-cCCeEEEEECC--C--CeeeEEEeCCCCCCCcCeEEEecCCCEEEE
Q 001157 580 KRTYSGFR-----KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 580 ~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1135)
...+.... ...+..++|+|++++++++. .++.|++|++. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 12456799999999887554 78999999998 3 34444454432 3789999999998888
Q ss_pred Ee-CCCcEEEEECC
Q 001157 650 TT-SDNGIKILANS 662 (1135)
Q Consensus 650 ~~-~dg~v~iw~~~ 662 (1135)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999554
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=5.6e-20 Score=205.41 Aligned_cols=301 Identities=10% Similarity=0.059 Sum_probs=205.0
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc--
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 587 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 587 (1135)
+++++++.++.|.+||+.+++....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998877766654332 4788999999998876653 46789999999999887776432
Q ss_pred --CCceeEEEEeCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC
Q 001157 588 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 588 --~~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 653 (1135)
...+..++|+|+|+++++++ .++.|.+||+.+++.+..+... ..+..++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11466799999999998886 5799999999999988887753 247889999999988887 6
Q ss_pred CcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCccc
Q 001157 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
+.|.+||+.++ +....+..+... ....++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~--------------------------------------------------~~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE--------------------------------------------------AETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT--------------------------------------------------TTTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC--------------------------------------------------CCceeC
Confidence 89999999887 333333221100 000112
Q ss_pred ccCcccccccc-ccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcc
Q 001157 734 VDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1135)
Q Consensus 734 ~~~~~~~~~~~-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 812 (1135)
+++..+..... +.... .+.......++..... .....+.+|
T Consensus 183 ~dg~~l~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-~~~~~v~~~------------- 224 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMA------------------------TPFYTARKDIDPADPT-AYRTGLLTM------------- 224 (337)
T ss_dssp CBCCCCCCCCTTTTEEE------------------------EEEEEEBTTSCTTSGG-GEEEEEEEE-------------
T ss_pred CCccEEeeeccCCCcee------------------------eeeecccccccccccc-ccccceEEE-------------
Confidence 22222111110 00000 0000111111110000 111134444
Q ss_pred cccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCC
Q 001157 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 892 (1135)
|..+++.....+.. + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|
T Consensus 225 ---------d~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~- 289 (337)
T 1pby_B 225 ---------DLETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST- 289 (337)
T ss_dssp ---------ETTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-
T ss_pred ---------eCCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-
Confidence 44555443221222 3 5568899999999999988 799999999999988887743 5678999999
Q ss_pred CCcEEEEEeCCccEEEEEcccceEeEeecCcc
Q 001157 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1135)
Q Consensus 893 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 924 (1135)
++++|++++.++.|++||+.+++.+..+..+.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 88888888999999999999999888876553
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=6.5e-21 Score=208.46 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=191.6
Q ss_pred EEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCc
Q 001157 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 442 (1135)
Q Consensus 364 ~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~-~~~ 442 (1135)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34578999999999876542 345888999999999999999986 78999999998 765
Q ss_pred eeeeeEeecC-CCCeeEEEEecCCCceEEEEEc--CCCcEEEEEc--CCCeeEEEecCCCCCeEEEEeccCCCccEEE-E
Q 001157 443 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 516 (1135)
Q Consensus 443 ~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~-s 516 (1135)
.. ...+| ...+.+++|+||++ +|++++ .++...||.+ .++. ...+..+. .+..++|+|++ +.|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33344 46789999999999 777777 3345555554 4444 45554443 48889998865 6665 7
Q ss_pred EEcCCeEEEEeCCCC-CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCceeEEeecccCCceeEE
Q 001157 517 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 517 ~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 594 (1135)
++.++.+++|+++.. .....+..+...+.+++|+|++++++.++. .++.+.+|++. .+.....+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344566667778999999999999887653 24567777765 4555666666554 78889
Q ss_pred EEeCCCCEEEEEecC-----------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 595 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|+++.|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887644443222234688999999999998887653
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=8.8e-20 Score=203.21 Aligned_cols=199 Identities=10% Similarity=0.012 Sum_probs=144.7
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEc-CCeEEEEeCCCCCc-eEE
Q 001157 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGS-RVD 536 (1135)
Q Consensus 459 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~-~~~ 536 (1135)
..|.+++.. .+++++.++.|.+||+.+++.+..+..+...+ .++|+|++ +++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666664 68889999999999999999988887666667 99998865 65555554 89999999998887 556
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-ecCCe-EEE
Q 001157 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQ-IKF 614 (1135)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~-i~i 614 (1135)
+..+.....+++|+|+|+++++.. ...+.+.|.+||+.+++.+..+..+. ....++|+|+|++++++ ..++. |.+
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVT-GLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECC-CSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred cccCCCCccceEECCCCCEEEEec-CCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEecCCCceEEE
Confidence 655555555599999999999432 11122289999999999888877644 46889999999866665 45578 999
Q ss_pred EECCCCeeeEEE--eCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCc
Q 001157 615 WDMDNMNMLTTV--DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 664 (1135)
|++.....+... ........+..++|+|+|+++++++ .++.|++||+.++
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 998764433111 0001112468899999999665554 5889999998765
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=5.6e-20 Score=205.40 Aligned_cols=276 Identities=8% Similarity=0.005 Sum_probs=205.9
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC-CeeEEEEcCCCCEEEE-EeCCCeEEEEEcC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLGV-AFSKHIVHLYTYN 438 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~la~-~~~dg~i~iwd~~ 438 (1135)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6888999999999999988765420 112222 4789999999987655 4567899999999
Q ss_pred CCCceeeeeEeec---CCCCeeEEEEecCCCceEEEEEc------------CCCcEEEEEcCCCeeEEEecCCCCCeEEE
Q 001157 439 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 439 ~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~l~~h~~~v~~l 503 (1135)
+++.+... .+.. |...+.+++|+|||+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98765422 1111 123678999999999 566664 579999999999998887764 4567888
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc----------------
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 567 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1135)
+|+|++ ++++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 898765 667666 78999999998877666654431 012378999987765432 111
Q ss_pred -------eEEEEeCCCCceeE-EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE
Q 001157 568 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 568 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
.|.+||+.+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999988752 2223332 67789999999999988 7999999999999888887542 468999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCcchheeeccC
Q 001157 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 640 ~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
|+|+|++|++++.++.|.+||+.++ +....+..
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~ 319 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDL 319 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEc
Confidence 9999999999999999999999988 55555543
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=8.1e-20 Score=204.93 Aligned_cols=246 Identities=12% Similarity=0.185 Sum_probs=170.4
Q ss_pred CCCeeEEEeecCCCEEEEEe----CCeEEEEeCCCce--EEEEeeCCCCCeeEEEEeCCCCcEEEEEe-CCccEEEEEcc
Q 001157 840 EESAACIALSKNDSYVMSAS----GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR 912 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~ 912 (1135)
...+..++|+|||+ |++++ ++.|.+||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 45567799999999 55443 3789999998765 4445555777899999999 888888777 78999999996
Q ss_pred -cc--eEeEeecC---------ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCC-CcccccceeeecCCCCCCCCCCcee
Q 001157 913 -VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 913 -~~--~~~~~l~~---------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 979 (1135)
++ +.+..+.. +...+.+++|+|||+++++...++.|++|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 33 33333322 12348899999999977777788999999998 443222111122222 35678
Q ss_pred EEECCCCcEEEEE--ECCcEEEEeccC--Cccc---ccCCCC---CCCCCeEEEEEccCCCEEE-EEecCCcEEEEecCC
Q 001157 980 VQFHNDQTHLLVV--HESQISVYDSKL--ECSR---SWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAET 1048 (1135)
Q Consensus 980 ~~fspdg~~l~~~--~d~~i~vwd~~~--~~~~---~~~~~~---~h~~~i~~~~~s~dg~~l~-s~~~dg~V~vwd~~~ 1048 (1135)
++|+|||++++++ .++.|.+|++.. ..+. ...... .....+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999988774 467899999842 2211 111110 1124588999999999875 555689999999973
Q ss_pred C---ceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-CcEEEEec--CCCc
Q 001157 1049 L---RFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP--SDAE 1104 (1135)
Q Consensus 1049 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-g~i~lW~~--~~~~ 1104 (1135)
. +.+..+ ..+...+..++|+| |+++|++++.+ +.|.+|++ .+++
T Consensus 272 ~g~~~~~~~~-----------~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQI-----------STEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEE-----------ECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEE-----------ecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 222222 13345678999999 77888777755 89999955 4444
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.5e-19 Score=201.66 Aligned_cols=273 Identities=8% Similarity=0.021 Sum_probs=205.0
Q ss_pred CcceeeecCCCCCCceee--------------cCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCc
Q 001157 314 QSDEVSFAGVAHTPNVYS--------------QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR 379 (1135)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~--------------~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~ 379 (1135)
.+..++++|+|+.+.+.. +|..+++....+.....+.+++|+|+|+++++++..++.|.+||..++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 455677777776655444 344567777777766779999999999977777778899999999998
Q ss_pred cccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCceeeeeEeecCCCCee
Q 001157 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 457 (1135)
+.+..... .....+ -......+.+++|+|+|+++++++ .++.|.+||..+++... .+..+...+.
T Consensus 122 ~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~ 188 (353)
T 3vgz_A 122 EVKGRLVL-----DDRKRT-----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMST 188 (353)
T ss_dssp CEEEEEES-----CCCCCC-----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCC
T ss_pred eeEEEEec-----CCCccc-----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccc
Confidence 76543110 000000 000011268899999999888876 47899999999887654 4444556688
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC----CCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCC
Q 001157 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLG 532 (1135)
Q Consensus 458 ~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~----h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~ 532 (1135)
+++|+|||+ ++++++.++.|.+||+.+++.+..+.. +...+..++|+|++ ++++.++ .++.|.+||..+++
T Consensus 189 ~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 189 GLALDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCEEETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCC
T ss_pred eEEECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCc
Confidence 999999999 788888899999999999998887764 56678889998865 5555554 55999999999888
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC
Q 001157 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1135)
....+..... ..++|+|+|++++++.. .++.|.+||..+++.+..+.... .+..++|+|+|++++++..++
T Consensus 265 ~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 7776665432 56899999998777652 47889999999999988887644 678899999999888776553
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=7.1e-20 Score=200.15 Aligned_cols=256 Identities=9% Similarity=0.046 Sum_probs=189.7
Q ss_pred CCCCceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCC-ccccccccceeecccccccccccc
Q 001157 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 324 ~~~~~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+..-.++.+|...++......|...|.+++|||||+ +|++++ ++.|.+||+.+ ++....
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~------------------ 78 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV------------------ 78 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe------------------
Confidence 334445566666667777777899999999999998 566665 88999999998 764431
Q ss_pred ccccc-CCCeeEEEEcCCCCEEEEEeC--CCeEEEEEc--CCCCceeeeeEeecCCCCeeEEEEecCCCceEEE-EEcCC
Q 001157 403 LLNDA-AISVNRCVWGPDGLMLGVAFS--KHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDD 476 (1135)
Q Consensus 403 ~~~~h-~~~V~~v~~spdg~~la~~~~--dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-s~~~d 476 (1135)
..+| ...|.+++|+|||++|++++. ++.+.||.+ .++. .. .+..+ ..+.+++|+||++ .|+ +++.|
T Consensus 79 -~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~--~l~~~~~~~ 150 (297)
T 2ojh_A 79 -DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGK--SFTYCGIRD 150 (297)
T ss_dssp -CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSS--EEEEEEEET
T ss_pred -ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCC--EEEEEECCC
Confidence 2233 467899999999999999983 345555554 4443 22 33333 3589999999999 454 78889
Q ss_pred CcEEEEEcC-CCeeEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCC-CCCceEEecCCCCeEEEEEEcCCC
Q 001157 477 KMIKVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 477 ~~i~iwd~~-~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1135)
+.++||++. .+.....+..+...+.+++|+|++ ..++.++ .++.+++|+++ .......+..+...+..++|+|+|
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CceEEEEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 999999864 233456677788999999998865 6666655 59999999987 455666777777889999999999
Q ss_pred CEEEEEeeCCC-------CCceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEecCC
Q 001157 554 TRLFSCGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 554 ~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1135)
++|++++.+.. +...|++||+.+++... .+.++.. .+..++|+|++++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 99998875321 23679999999887643 3335544 788899999999999887553
No 150
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.3e-20 Score=223.03 Aligned_cols=272 Identities=15% Similarity=0.118 Sum_probs=197.7
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~ 425 (1135)
.+|++++|||||++++.++..||++.||++.+++... +..|. ..|.+++|||| +.+++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEEE
Confidence 4799999999999544444449999999997665432 33444 68999999999 77777
Q ss_pred EeC---CCeEEEEEcCC--CCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCe
Q 001157 426 AFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 426 ~~~---dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v 500 (1135)
++. +....+|.+.. ..... .+.. ...+...+|+|||+.+++++++.|+ +.+||+.+++.......+.
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~--- 152 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ---RLEA-VKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG--- 152 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE---ECTT-SCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---
T ss_pred eccCCCCcceEEEEEeccCCCccc---cccC-CCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---
Confidence 765 45566766544 22222 2222 2234577999999875666666555 4599999988665544333
Q ss_pred EEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 501 YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.+
T Consensus 153 ~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTT
T ss_pred ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCC
Confidence 788898865 899988877 78999999877654 56777788999999999999995432 3334899999999
Q ss_pred CceeEEeecccCCceeEEE--------EeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 577 GAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
++.. .+..+.. .+..++ |+|||..+++++.++++++|++ ++.... . ...+.+++|+ ++++++
T Consensus 228 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 228 GSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp CCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEEE
T ss_pred CcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEEE
Confidence 8887 6665544 555566 9999988888999999999999 655431 1 1357889999 999998
Q ss_pred EEeCCCc---EEEEECC
Q 001157 649 VTTSDNG---IKILANS 662 (1135)
Q Consensus 649 ~~~~dg~---v~iw~~~ 662 (1135)
+++.+.+ +.+|+..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8877644 5555543
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=5.8e-19 Score=202.53 Aligned_cols=314 Identities=13% Similarity=0.122 Sum_probs=197.5
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+..+++++++..+++++.++ +++|+......... . ......+........ ..| ...|.+++|+|+|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~-~~~v~~l~~spdg 104 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK--P-GDDPNKIVDKVQGLL-------VPM-KFPIHHLALSCDN 104 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC--T-TCCTTCEEECCCCEE-------ECC-SSCEEEEEECTTS
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc--c-ccCcccccccCcccc-------ccC-CCcccEEEEcCCC
Confidence 4578899999999999988887 88887643211000 0 000000000000000 113 6789999999999
Q ss_pred CEEE----EEe-CCeEEEEeCCCc--------e---EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE
Q 001157 853 SYVM----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1135)
Q Consensus 853 ~~la----~~s-dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 916 (1135)
++|+ +++ |++|+|||+.++ + .+..+.+|...|++++|+|+++.+||+++.||+|++||+.+++.
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998764 2 24566779999999999994489999999999999999999987
Q ss_pred eEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCC-CCCCCceeEEECCCCcEEEEE--E
Q 001157 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVV--H 993 (1135)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg~~l~~~--~ 993 (1135)
+....+|...|++++|+|+|++|++++.||+|++||++ ++... .+....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999999999999999999999999998 33221 111111100 011378999999999988773 3
Q ss_pred CC------cEEEEecc-CCc--ccccCCC-------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEecCCCc--e-ee
Q 001157 994 ES------QISVYDSK-LEC--SRSWSPK-------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLR--F-RC 1053 (1135)
Q Consensus 994 d~------~i~vwd~~-~~~--~~~~~~~-------~~h~~~i~~~~~s~dg~~l~s~~~-dg~V~vwd~~~~~--~-~~ 1053 (1135)
+| .+++|++. .+. ...+... .+...+-..+.+-+|.+++++++. .+.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 38999993 211 1111100 011222223334478887766654 3335555543210 0 00
Q ss_pred ccC--CCcccCccccCCCCCCcEEEeeC--CCC------------CCEEEEEecCCcEEEEecCC
Q 001157 1054 RIG--PSAYIPTYAVSSNTAHPLVIAPH--PSE------------PNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1054 ~~~--~~~~~~~~~~~~~~~~~~~~~~s--p~~------------~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.+. ....+|... .+....++.+++. ..+ --.|..-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~-~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTD-KSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCT-TSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCC-CCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 000 011233321 1233444444442 111 12567778899999999976
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.1e-18 Score=195.81 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=192.2
Q ss_pred CCCCceeecCCcceeEE--EEecCCCCeeEEEeecCCCeEEEEEeC--CCcEEEEEcCCccccccccceeeccccccccc
Q 001157 324 AHTPNVYSQDDLTKTVV--RTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 324 ~~~~~~~~~d~~~~~~~--~~l~h~~~V~~~~fspdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
++.+.+|.+|..+++.. ....+...+..++|||||+ +++++.. ++.|.+|++.+++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 44566777776655543 3445677899999999998 6666643 689999999776532110
Q ss_pred ccccccccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEeec---------CCCCeeEEEEecCCCceE
Q 001157 400 QNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spdg~~la~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------h~~~v~~l~~s~d~~~~~ 469 (1135)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ +
T Consensus 80 ---~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l 154 (347)
T 3hfq_A 80 ---TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--L 154 (347)
T ss_dssp ---EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--E
T ss_pred ---eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--E
Confidence 1234677899999999999999888 689999999964433333323321 123488999999999 7
Q ss_pred EEEEcCCCcEEEEEcC-CCeeEE--EecCC-CCCeEEEEeccCCCccEEE-EEEcCCeEEEEeCCC--CCce--EEecCC
Q 001157 470 IVTCGDDKMIKVWDVV-AGRKQY--TFEGH-EAPVYSVCPHHKESIQFIF-STAIDGKIKAWLYDY--LGSR--VDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~-~~~~~~--~l~~h-~~~v~~l~~~~~~~~~~l~-s~s~dg~i~~wd~~~--~~~~--~~~~~~ 540 (1135)
+++...++.|.+||+. +++... .+..+ ......++|+|++ ++++ +...++.|.+|+++. +... ..+...
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 8888889999999998 564332 22222 3367889998865 6554 456789999999875 3221 122221
Q ss_pred C------CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC---CceeEEeecccCCceeEEEEeCCCCEEEEEec-CC
Q 001157 541 G------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF 610 (1135)
Q Consensus 541 ~------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg 610 (1135)
. ..+..++|+|||++|+++.. .++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCC
Confidence 1 46889999999999876553 477899999872 244555555433 5788999999999988775 58
Q ss_pred eEEEE--ECCCCeee
Q 001157 611 QIKFW--DMDNMNML 623 (1135)
Q Consensus 611 ~i~iw--d~~~~~~~ 623 (1135)
.|.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=7.8e-20 Score=227.15 Aligned_cols=285 Identities=7% Similarity=0.024 Sum_probs=190.0
Q ss_pred eEEEEEeCCcceeeeecc---------cceeEEEeecccCCCCCCcccccccceeccCCCCCccc-cCCCCCCCCCCCee
Q 001157 775 VVRLIYTNSGLSLLALAS---------NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAA 844 (1135)
Q Consensus 775 i~~~~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~v~ 844 (1135)
+.+++|||||++|+.++. ++.|++||+. ++.... ..+ ...+.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~l------~~~~~ 113 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNEL------PRPIQ 113 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSCC------CSSBC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCccccceec------Ccccc
Confidence 567899999999988876 5778888654 333210 001 33577
Q ss_pred EEEeecCCCEEEEEeCCeEEEEeCCCceEEEEe-eCCCCCe-----------------eEEEEeCCCCcEEEEEeCCc--
Q 001157 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAA-----------------TFLAFHPQDNNIIAIGMEDS-- 904 (1135)
Q Consensus 845 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~l~~sp~~~~~lasg~~dg-- 904 (1135)
.++|||||++||.+.++.|++||+.+++..... .++...| .+++||| ||++||+++.|.
T Consensus 114 ~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~ 192 (719)
T 1z68_A 114 YLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTD 192 (719)
T ss_dssp CEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTT
T ss_pred cceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCC
Confidence 899999999999999999999999988765432 2222222 5899999 899999987652
Q ss_pred --------------------------------cEEEEEcccceEe--------EeecCccCceEEEEEcCCCCeEEEEcC
Q 001157 905 --------------------------------SVQIYNVRVDEVK--------TKLKGHQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 905 --------------------------------~v~iwd~~~~~~~--------~~l~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
.|++||+.+++.. ..+.+|...+..++||||++++++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~ 272 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK 272 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence 7899999988753 224578888999999999887777442
Q ss_pred C----CcEEEEe----CCCcccccceeeecCCCCCCCCCCce-----eEEECCCCcEEEE-EE--CC--cEEEEeccCCc
Q 001157 945 D----AQLCMWS----IDKWEKLKSRFIQAPAGRQSPLVGET-----KVQFHNDQTHLLV-VH--ES--QISVYDSKLEC 1006 (1135)
Q Consensus 945 D----~~i~iWd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~fspdg~~l~~-~~--d~--~i~vwd~~~~~ 1006 (1135)
. ..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. .. ++ .|.+||+.+..
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2 2488899 77766432210 0001222 2333 7899999997665 32 34 57777774444
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCC--Cce-eeccCCCcccCccccCCCCCCcEEEee
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAET--LRF-RCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
...+.. +...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... ..+|...+..+.|
T Consensus 349 ~~~lt~---~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~-------~~~~~~~~~~~~~ 417 (719)
T 1z68_A 349 AIQITS---GKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH-------LRKERCQYYTASF 417 (719)
T ss_dssp CEECSC---SSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT-------TTTTTBCBEEEEE
T ss_pred eEeccc---CceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc-------cCCCCCceEEEEE
Confidence 443332 25568888888 88887766654 7889998764 421 1222100 1135556778999
Q ss_pred CCCCCCEEE-EEecC--CcEEEEecCCCc
Q 001157 1079 HPSEPNQIA-LGMSD--GAVHVVEPSDAE 1104 (1135)
Q Consensus 1079 sp~~~~~l~-s~~~D--g~i~lW~~~~~~ 1104 (1135)
+| ++++++ +++.+ ..+.+|++.+++
T Consensus 418 s~-dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 418 SD-YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CG-GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CC-CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 99 555555 44444 578899987776
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6e-20 Score=228.14 Aligned_cols=317 Identities=9% Similarity=0.062 Sum_probs=215.1
Q ss_pred eeeecCCCCCC------ceeecCCcceeEEEEecCCC----CeeEEEeecCCCeEEEEEeC---------CCcEEEEEcC
Q 001157 317 EVSFAGVAHTP------NVYSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEVG 377 (1135)
Q Consensus 317 ~~~~~~~~~~~------~~~~~d~~~~~~~~~l~h~~----~V~~~~fspdg~~lla~gs~---------dg~v~iwd~~ 377 (1135)
+++|+|||+.+ .++.++..+++....+.+.. .|.+++|||||++ |++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECC
Confidence 45566665332 24445556667777676432 4999999999994 555554 6899999999
Q ss_pred CccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCe-
Q 001157 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV- 456 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v- 456 (1135)
+++.+... .....+.+++|||||++||++. ++.|++|++.+++.... ...++...|
T Consensus 99 ~g~~~~~~--------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~ 155 (719)
T 1z68_A 99 NGEFVRGN--------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIF 155 (719)
T ss_dssp TTEECCSS--------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEE
T ss_pred CCccccce--------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeE
Confidence 98763210 0124688999999999999985 78999999988765431 112333222
Q ss_pred ----------------eEEEEecCCCceEEEEEcCCC----------------------------------cEEEEEcCC
Q 001157 457 ----------------NDIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVVA 486 (1135)
Q Consensus 457 ----------------~~l~~s~d~~~~~l~s~~~d~----------------------------------~i~iwd~~~ 486 (1135)
.+++|||||+ .|++++.|. .|++||+.+
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred cccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 5899999999 777776542 788999988
Q ss_pred CeeE--------EEecCCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEe----CCCCCceEEe----cCCCCeEE-
Q 001157 487 GRKQ--------YTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT- 545 (1135)
Q Consensus 487 ~~~~--------~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd----~~~~~~~~~~----~~~~~~v~- 545 (1135)
++.. ..+.+|...+.+++|+|++ .++++.... ..|.+|| +.+++....+ ..+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTDE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESSSS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeCCC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 7753 1234688889999999873 677764433 2488899 7666554433 34555565
Q ss_pred ----EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEE
Q 001157 546 ----MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWD 616 (1135)
Q Consensus 546 ----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd 616 (1135)
.++|+|||+.++....+.++...|++||+.+++ ...+..+.. .+..+.++ +++.++..+.+ +.+++|.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 789999999877654455567789999988776 445554433 56667777 88888776654 7888888
Q ss_pred CCC--Ce-eeEEEeC--CCCCCCcCeEEEecCCCEEEEEe-CC--CcEEEEECCCc
Q 001157 617 MDN--MN-MLTTVDA--DGGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 664 (1135)
Q Consensus 617 ~~~--~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~d--g~v~iw~~~~~ 664 (1135)
+.. +. ....+.. .++...+..+.|+|+++.++..+ .. ..+.+|++.++
T Consensus 389 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 389 ISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 754 32 1233321 01223467899999998777543 32 46889998877
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=5.4e-19 Score=202.80 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=177.7
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE--
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-- 424 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la-- 424 (1135)
..++.+++++++. ++++|+.++ ++||+...-....... .+... ...........+.+.|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 677788777 8998864321110000 00000 00000001123667899999999999999
Q ss_pred --EEeCCCeEEEEEcCCC--------CceeeeeEeecCCCCeeEEEEecC-CCceEEEEEcCCCcEEEEEcCCCeeEEEe
Q 001157 425 --VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 425 --~~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~l 493 (1135)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999765 222334456789999999999998 56 8999999999999999999887777
Q ss_pred cCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------CCeEEEEEEcCCCCEEEEEeeCC---
Q 001157 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK--- 563 (1135)
Q Consensus 494 ~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~--- 563 (1135)
.+|...|.+++|+|++ ++|++|+.||+|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 7899999999998864 899999999999999998 4444444433 23899999999988877654321
Q ss_pred CCCceEEEEeCCCCc-----eeEEee-------cccCCceeEEEEeCCCCEEEEEe-cCCeEEEEEC
Q 001157 564 EGESHLVEWNESEGA-----IKRTYS-------GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDM 617 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 617 (1135)
+....+++|++...+ ....+. +... ....+..-++.+++++++ ..+.|.+...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999997642 112221 1111 222344447777777655 4455666554
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=4.5e-19 Score=214.04 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=177.8
Q ss_pred cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEcC---CCcEEE
Q 001157 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~---d~~i~i 481 (1135)
+..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3567999999999999999887 999999999765432 344455 68999999999 5 6777764 555666
Q ss_pred EEcCC---CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 482 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~---~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
|.+.. +... .+.... .+...+|+|++++..+++++.++. .+||+.+++.......+. .+++|||||+++++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 65543 3333 443332 345668888887556666655555 499998876554443333 78999999999998
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC--eEEEEECCCCeeeEEEeCCCCCCCcC
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||++|+++..++ .|++||+.+++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 7764434477999999988765 5666554 789999999999999888888 8999999998877 44433 23566
Q ss_pred eEE--------EecCCCEEEEEeCCCcEEEEEC
Q 001157 637 RLR--------FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 637 ~~~--------~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 667 9999999999999999999998
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=3.1e-18 Score=195.50 Aligned_cols=299 Identities=10% Similarity=0.002 Sum_probs=198.4
Q ss_pred cceeEEEEec-CCCCeeE-----EEeecCCCeEEEEEeCCC--cEEEEEcCCccccccccceeecccccccccccccccc
Q 001157 335 LTKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~-----~~fspdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
.++.....+. |...+.. ++|||||+++++++..+| .|.+||+.+++.... ..+
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~ 78 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEG 78 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCS
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeC
Confidence 3444455554 5545555 899999996555554467 488889888765431 344
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEE--EecCCCceEEEEE-----------
Q 001157 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVTC----------- 473 (1135)
Q Consensus 407 h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~~~l~s~----------- 473 (1135)
+...+..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... +++|++ +++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLT 153 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCC
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccccccc
Confidence 55566678899999999999999999999999987543 2334444454444 489998 55532
Q ss_pred -----------cCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc-CCCccEEEEEEcC------CeEEEEeCCCCCceE
Q 001157 474 -----------GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSRV 535 (1135)
Q Consensus 474 -----------~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~~~l~s~s~d------g~i~~wd~~~~~~~~ 535 (1135)
+.+..|.+||+.+++.. .+..+...+..++|+| ++ ..|+.++.+ ..|.++|...... .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~ 229 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNM-R 229 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCC-E
T ss_pred ccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCce-E
Confidence 24578999999998754 4445677899999988 65 777777653 3677888765443 3
Q ss_pred EecCCC--CeEEEEEEcCCCCEEEEEeeCC-CCCceEEEEeCCCCceeE--EeecccC--CceeEEEEeCCCCEEEEE--
Q 001157 536 DYDAPG--NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEGAIKR--TYSGFRK--RSLGVVQFDTTRNRFLAA-- 606 (1135)
Q Consensus 536 ~~~~~~--~~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~~~~s~~~~~l~~~-- 606 (1135)
.+..+. ..+..++|+|||+.|+..+... .....|++||+.+++... .+.++.. .......|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 333333 3678899999999887655422 112359999999887433 3333100 001123699999988754
Q ss_pred -------ecCCeEEEEECCCCeeeEEEeCCCCCC--------CcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 607 -------GDEFQIKFWDMDNMNMLTTVDADGGLP--------ASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 607 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887644433322110 3678899999998887664 666666654
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=8.2e-18 Score=208.55 Aligned_cols=275 Identities=11% Similarity=0.109 Sum_probs=184.2
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCC-----CeeEEEEcCCCCE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGLM 422 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~ 422 (1135)
...+++|+|||+ +++++ ||+|++||+.+++.... +.+|.. ....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 467899999996 67776 99999999999875431 233332 3345899999999
Q ss_pred EEEEeCC---------CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-
Q 001157 423 LGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT- 492 (1135)
Q Consensus 423 la~~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 492 (1135)
|+.++.+ +.+.+||+.+++.. .+..|...+..++|||||+ .||.+. |+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 56779999998643 3556778899999999999 577664 78999999988875542
Q ss_pred ecCCCCCe-----------------EEEEeccCCCccEEEEEEcCCe-EEEEeCCCCCceEEecCCCCeEEEEEEcCCCC
Q 001157 493 FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 493 l~~h~~~v-----------------~~l~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1135)
..++...+ .++.|+|++ +.|+.++.|.+ +.+|++....... .+...+..+.|.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 347898865 88888876655 8888764221110 2334566777777664
Q ss_pred EEEEEeeCCCCCceEEEEeCCC---Cc--eeEEeec-----ccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCC
Q 001157 555 RLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG-----FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNM 620 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~ 620 (1135)
.. ....|++||+.+ ++ ....+.. .+...+..++|+|||+.++... .+..|++||+.++
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 31 234599999998 73 2233332 1233688999999999766653 2347999999988
Q ss_pred e----e--eEEE--eCCCCCCC---cCeEEEecCCCEEE-EEeC-CC--cEEEEECCCc
Q 001157 621 N----M--LTTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-DN--GIKILANSDG 664 (1135)
Q Consensus 621 ~----~--~~~~--~~~~~~~~---v~~~~~s~~~~~l~-~~~~-dg--~v~iw~~~~~ 664 (1135)
+ + +..+ ..+..-.. ....+|+|||+.++ ..+. +| .|++|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 1 1111 22222111 23788999999877 5553 33 4666665543
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.3e-18 Score=192.08 Aligned_cols=281 Identities=10% Similarity=0.066 Sum_probs=192.8
Q ss_pred EEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeeccccccccccccccc-ccCCCeeEEEEcCCCCEEEE-EeC
Q 001157 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLMLGV-AFS 428 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~la~-~~~ 428 (1135)
.++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457788886 788899999999999998876542 11 12225789999999997654 456
Q ss_pred CCeEEEEEcCCCCceeeeeEee-cC-----CCCeeEEEEecCCCceEEEEEcCC------------CcEEEEEcCCCee-
Q 001157 429 KHIVHLYTYNPTGELRQHLEID-AH-----VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRK- 489 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~l~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~- 489 (1135)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8999999999876554 232 22 23478999999999 67777654 8999999988543
Q ss_pred --EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---------------------C---e
Q 001157 490 --QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------------N---W 543 (1135)
Q Consensus 490 --~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~ 543 (1135)
+..+. +...+.+++|+|++ . ++.++ +.|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 34468889998865 6 44443 449999999887766654332 0 3
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE-EeecccCCceeEEEEeC-CCCEEEEEecCCeEEEEECCCCe
Q 001157 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
...+++++++........ ....+..+|..+++... .+.. ....+..++|+| ++++++++ ++.|++||+.+++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEeccccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 455667665532211100 01112335555544321 1122 222678899999 99999988 8899999999999
Q ss_pred eeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeecc
Q 001157 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.+..+.... .+.+++|+|+|++|++++.++.|.+||..++ +....+.
T Consensus 287 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~ 333 (349)
T 1jmx_B 287 LIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIK 333 (349)
T ss_dssp EEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEE
T ss_pred EEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeeee
Confidence 888887432 4689999999998888888999999999887 4455443
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=9.3e-19 Score=196.55 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=179.4
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEE-EEEeCCccEEEEEcccceEeEeec
Q 001157 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 921 (1135)
Q Consensus 845 ~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~ 921 (1135)
.++++++++++++++ +++|.+||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888888 8999999999999988887543 2578999999 67654 556678999999999999887776
Q ss_pred Cc------cCceEEEEEcCCCCeEEEEcCC------------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEEC
Q 001157 922 GH------QNRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 922 ~h------~~~i~~l~~s~d~~~l~s~~~D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++....... .... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--FPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--EECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--ccCC----CcccceeEC
Confidence 33 2337889999999999988865 8999999998654322111 1111 357889999
Q ss_pred CCCcEEEEEECCcEEEEec-cCCcccccCCCC------------------------------------------------
Q 001157 984 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD------------------------------------------------ 1014 (1135)
Q Consensus 984 pdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~------------------------------------------------ 1014 (1135)
|||+ ++++ ++.|.+||. +++....+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 455999999 544443322110
Q ss_pred -----------------CCCCCeEEEEEcc-CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEE
Q 001157 1015 -----------------ALPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVI 1076 (1135)
Q Consensus 1015 -----------------~h~~~i~~~~~s~-dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1135)
.+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+.. + ..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----------~--~~~~~~ 300 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL----------D--HTYYCV 300 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC----------S--SCCCEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC----------C--CCccce
Confidence 0012456778889 99999988 88999999999988776631 1 245689
Q ss_pred eeCCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001157 1077 APHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~~~ 1109 (1135)
+|+| ++++|++++.++.|.+||+.+++..-..
T Consensus 301 ~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 301 AFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 9999 7777777888999999999988754443
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=6.1e-18 Score=209.69 Aligned_cols=379 Identities=10% Similarity=0.025 Sum_probs=240.0
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc----eeEEEEeCCCCEEEEEecC---------
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDE--------- 609 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~d--------- 609 (1135)
...+++|+|||++++++ ++.|++||+.+++....+.++.... ...++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 34578999999888874 5679999999999887777765321 2347899999999998875
Q ss_pred CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCC
Q 001157 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1135)
+.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|++.++....-+..++...+.
T Consensus 92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~---------- 157 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY---------- 157 (740)
T ss_dssp EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE----------
T ss_pred eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee----------
Confidence 567799999988653 222 233688999999999999885 679999999877321111111110000
Q ss_pred CCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCC
Q 001157 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1135)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 769 (1135)
.+ ..-.+|.-.
T Consensus 158 ---------------------------------------------------~g--~~~~v~~ee---------------- 168 (740)
T 4a5s_A 158 ---------------------------------------------------NG--ITDWVYEEE---------------- 168 (740)
T ss_dssp ---------------------------------------------------ES--BCCHHHHHH----------------
T ss_pred ---------------------------------------------------cC--cccccccch----------------
Confidence 00 000000000
Q ss_pred CCCCceEEEEEeCCcceeeeeccc-ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEe
Q 001157 770 IAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1135)
Q Consensus 770 ~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~ 848 (1135)
--.....+.|||||+.|+....| +.+.+|++..... .. .+ ...+..+.+
T Consensus 169 -~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~-~~~~~~~~y 218 (740)
T 4a5s_A 169 -VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQ-YPKTVRVPY 218 (740)
T ss_dssp -TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CS-SCEEEEEEC
T ss_pred -hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CC-CCcceeecC
Confidence 00123468899999999988766 4488887642110 00 02 445677778
Q ss_pred ecCCCEEEEEeCCeEEEEeCCC---c---eEEEEee------CCCCCeeEEEEeCCCCcEEEEEeC----CccEEEEEcc
Q 001157 849 SKNDSYVMSASGGKVSLFNMMT---F---KVMTMFM------SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVR 912 (1135)
Q Consensus 849 s~dg~~la~~sdg~i~iwd~~~---~---~~~~~~~------~~~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~~ 912 (1135)
.+.|..- ...+|++||+.+ + +.. .+. +|...+..++|+| |+++++.... +..|++||+.
T Consensus 219 p~~G~~~---~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 219 PKAGAVN---PTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp CBTTSCC---CEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEE
T ss_pred CCCcCcC---CeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECC
Confidence 7776431 124699999998 7 433 333 3677799999999 7887665533 3479999999
Q ss_pred cce----EeE--ee--cCccCceE-----EEEEcCCCCeEE-EEcC-C--CcEEEEeCCCcccccceeeecCCCCCCCCC
Q 001157 913 VDE----VKT--KL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 913 ~~~----~~~--~l--~~h~~~i~-----~l~~s~d~~~l~-s~~~-D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+++ +.. .+ .+|...|. .++|+|||+.|+ ..+. + ..|++||+.+++.. ....+. .
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~----~ 364 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT----W 364 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS----S
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC----E
Confidence 987 332 22 45655544 789999999877 6653 3 45888998876532 222222 3
Q ss_pred CceeEEECCCCcEEEE-EEC-----CcEEEEec--cCCccc-ccCCC-CCCCCCeEEEEEccCCCEEEEEecC---CcEE
Q 001157 976 GETKVQFHNDQTHLLV-VHE-----SQISVYDS--KLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIG 1042 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~-~~d-----~~i~vwd~--~~~~~~-~~~~~-~~h~~~i~~~~~s~dg~~l~s~~~d---g~V~ 1042 (1135)
.+..+. .+|++.|+. +.. +...||.+ .+.... .+... .+.......+.|||||++++..... ..+.
T Consensus 365 ~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~ 443 (740)
T 4a5s_A 365 EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYT 443 (740)
T ss_dssp CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEE
T ss_pred EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEE
Confidence 444443 245777666 432 23455554 333222 22111 1224578899999999987765433 3688
Q ss_pred EEecCCCceeecc
Q 001157 1043 VFDAETLRFRCRI 1055 (1135)
Q Consensus 1043 vwd~~~~~~~~~~ 1055 (1135)
+++..+++.+..+
T Consensus 444 l~~~~~~~~~~~l 456 (740)
T 4a5s_A 444 LHSSVNDKGLRVL 456 (740)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCcEEEEe
Confidence 8998887665544
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=4e-17 Score=184.01 Aligned_cols=302 Identities=10% Similarity=0.071 Sum_probs=188.2
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeC--CCCceeEEeecccCCceeEEEEeCCCCEEEEEecC----CeEEEEECCC--Cee
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNM 622 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~ 622 (1135)
+...+++.++....+++.|++|++ .+++.......+ ......++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 344566677654445667888865 556554433323 3367779999999999998875 7999998765 443
Q ss_pred --eEEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCC
Q 001157 623 --LTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 623 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1135)
+....... .....+++ ++++|++++ .++.|.+|++..... +..+..... ..+.
T Consensus 90 ~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~------------------~~g~- 145 (361)
T 3scy_A 90 HLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-LLPASDVIE------------------FKGS- 145 (361)
T ss_dssp EEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-BCSCSEEEE------------------CCCC-
T ss_pred EEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-CcccceeEE------------------ccCC-
Confidence 23333222 23456666 888777776 578999999865411 111100000 0000
Q ss_pred CccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEE
Q 001157 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
+ ..+...+...+.+++
T Consensus 146 ---------------------------------------------~-------------------~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 146 ---------------------------------------------G-------------------PDKERQTMPHLHCVR 161 (361)
T ss_dssp ---------------------------------------------C-------------------SCTTTCSSCCEEEEE
T ss_pred ---------------------------------------------C-------------------CCccccCCCcceEEE
Confidence 0 000011334578899
Q ss_pred EeCCcceeeeec-ccceeEEEeecccCCCCCCc-ccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 780 YTNSGLSLLALA-SNAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 780 ~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
|+|+|+++++++ .++.+.+|++.........+ .... +........ + ...+..++|+|||+++++
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEEE
Confidence 999999776555 47899999875321100000 0000 000000111 2 455788999999998877
Q ss_pred Ee--CCeEEEEeCCCceE--EEEee---CCCCCeeEEEEeCCCCcEEEEEeC--CccEEEEEcc--cce--EeEeecCcc
Q 001157 858 AS--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVR--VDE--VKTKLKGHQ 924 (1135)
Q Consensus 858 ~s--dg~i~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~--~~~--~~~~l~~h~ 924 (1135)
++ ++.|.+||+.+++. +..+. .+......++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. .
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 76 78999999987754 33333 2334578999999 8888866665 4899999996 444 4445554 5
Q ss_pred CceEEEEEcCCCCeEEEEc-CCCcEEEEeC--CCcc
Q 001157 925 NRITGLAFSPTLNALVSSG-ADAQLCMWSI--DKWE 957 (1135)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~--~~~~ 957 (1135)
..+.+++|+|||++|++++ .++.|.+|++ ++++
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 5688999999999888877 6788999655 4554
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1.1e-16 Score=180.44 Aligned_cols=272 Identities=14% Similarity=0.159 Sum_probs=185.7
Q ss_pred EEEEEe----CCCcEEEEEcC--CccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC----C
Q 001157 361 ILLVGT----NVGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----H 430 (1135)
Q Consensus 361 lla~gs----~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d----g 430 (1135)
.+++|+ .++.|.+|++. +++.... . .. +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~-~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------S-DA-EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------E-EE-ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------e-cc-cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 555664 35689999774 3432211 0 11 66778889999999999999886 7
Q ss_pred eEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE------ecC--------
Q 001157 431 IVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT------FEG-------- 495 (1135)
Q Consensus 431 ~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~------l~~-------- 495 (1135)
.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+|++.....+.. ..+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999998764 333333344445667778888 7773 344445789999999975433221 111
Q ss_pred CCCCeEEEEeccCCCccEEEEE-EcCCeEEEEeCCCCCc------e-------EEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 496 HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGS------R-------VDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~------~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
+...+.+++|+|++ ++++++ ..++.|++|+++.... . ............++|+|||++++++..
T Consensus 153 ~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 12345789998865 655554 4589999999876542 1 222334556789999999999887763
Q ss_pred CCCCCceEEEEeCCCCce--eEEeeccc--CCceeEEEEeCCCCEEEEEec--CCeEEEEECC--CCe--eeEEEeCCCC
Q 001157 562 SKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMD--NMN--MLTTVDADGG 631 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 631 (1135)
.++.|.+||+.+++. +..+.... ......++|+|||++|+++.. ++.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 477899999987754 23332221 124678999999999977664 5899999986 444 3444443 2
Q ss_pred CCCcCeEEEecCCCEEEEEe-CCCcEEEEECC
Q 001157 632 LPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 632 ~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~ 662 (1135)
..+..++|+|||++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 3578999999999888887 57899997554
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=7.8e-18 Score=189.76 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=171.0
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCC-CceEEEEeeC-CCCCeeEEEEeCCCCc--EEEEEe-------------C
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGM-------------E 902 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~-~~~~~~~~~~-~~~~v~~l~~sp~~~~--~lasg~-------------~ 902 (1135)
...+..++|+|||++|++++.+.|.+|++. ++++...... ..+.+.+++|+| +++ ++++++ .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346778999999999998884499999997 7776544321 113366799999 787 455553 6
Q ss_pred CccEEEEEcc-cceEeEeec----CccCceEEEEEcCCCCeEEEEc-CCCcEEEEeCC-CcccccceeeecCCCCCCCCC
Q 001157 903 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 975 (1135)
Q Consensus 903 dg~v~iwd~~-~~~~~~~l~----~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++|++. +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466554443 2456799999999999888765 46789999998 66532211122111 11 4
Q ss_pred CceeEEECCCCcEEEEEE--CCcEEEEecc---CCcc------cccCCC-CCCCC------CeEEEE-EccCCCEEEEEe
Q 001157 976 GETKVQFHNDQTHLLVVH--ESQISVYDSK---LECS------RSWSPK-DALPA------PISSAI-YSCDGLLVYAGF 1036 (1135)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~i~vwd~~---~~~~------~~~~~~-~~h~~------~i~~~~-~s~dg~~l~s~~ 1036 (1135)
.+..++|+|||++|+++. ++.|.+|++. ++.. ..+... .+|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998854 5789999873 2221 111111 12222 588999 999999988776
Q ss_pred cCC------cEEEEecC-CCceeeccCCCcccCccccCCCCCCcEEEeeCCC--CCCEEEEEecC-CcEEEEecCCC
Q 001157 1037 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1103 (1135)
Q Consensus 1037 ~dg------~V~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~~l~s~~~D-g~i~lW~~~~~ 1103 (1135)
.+. .|.+|++. +|+...... .. ..+...+..++|+|. |+++|++++.+ ++|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~-----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF---LS-----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE---EE-----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee---ee-----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 432 89999996 565432110 00 012234556888996 67888888865 89999999765
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.9e-17 Score=188.91 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=174.3
Q ss_pred ccccCCCeeE-----EEEcCCCCEEEEEeC-CC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC
Q 001157 404 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 404 ~~~h~~~V~~-----v~~spdg~~la~~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~ 475 (1135)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 3445544444 889999999999987 66 48888988876443 3345555666789999999 7888888
Q ss_pred CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE----------------------cCCeEEEEeCCCCCc
Q 001157 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 533 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s----------------------~dg~i~~wd~~~~~~ 533 (1135)
++.|++||+.+++....+..+...+....+..+.++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999999998877666666666555554344557776432 346799999988754
Q ss_pred eEEecCCCCeEEEEEEcC-CCCEEEEEeeCCC--CCceEEEEeCCCCceeEEeecccC-CceeEEEEeCCCCEEEEEec-
Q 001157 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 608 (1135)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~- 608 (1135)
.. +..+...+..++|+| ||+.|+.+..... ....|.++|...+.. ..+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 334556789999999 9999987764221 144788899876554 33333332 25778899999998866442
Q ss_pred CC----eEEEEECCCCeeeEEEeCCCC--C-CCcCeEEEecCCCEEEEE---------eCCCcEEEEECCCc
Q 001157 609 EF----QIKFWDMDNMNMLTTVDADGG--L-PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~~~~s~~~~~l~~~---------~~dg~v~iw~~~~~ 664 (1135)
++ .|++||+.+++.......... . .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 399999999875433322210 0 012345799999988754 44668999998876
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=3.4e-16 Score=175.12 Aligned_cols=312 Identities=9% Similarity=0.083 Sum_probs=207.3
Q ss_pred CccEEEEEE------cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee------CCCCCceEEEEeCCCC
Q 001157 510 SIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEG 577 (1135)
Q Consensus 510 ~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 577 (1135)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 335555543 4789999999988877777655444 8999999999998753 1123567999999999
Q ss_pred ceeEEeeccc-----CCceeEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEE-EeCCCCCCCcCeEEEecCC-CEEE
Q 001157 578 AIKRTYSGFR-----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLA 648 (1135)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~ 648 (1135)
+.+..+.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876431 124566899999999999863 68999999999988877 55321 1235677765 6778
Q ss_pred EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccC
Q 001157 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+.+.||.+.+|+.....+...... .
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~--~----------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR--S----------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE--C-----------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeecc--c-----------------------------------------------------
Confidence 888999999998765212221100 0
Q ss_pred CCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCC
Q 001157 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 808 (1135)
..+|+... . ...+.+++++..++..+.++.+.++|+......
T Consensus 193 ------------------~~~~~~~~------------------~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~- 234 (361)
T 2oiz_A 193 ------------------KQMFSVKD------------------D-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK- 234 (361)
T ss_dssp ------------------CCCSCTTT------------------S-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-
T ss_pred ------------------cceEcCCC------------------C-ceEEEecccCCEEEEEeCCCeEEEEEecCCCce-
Confidence 00111100 0 001112444544555555667777765321110
Q ss_pred CCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe------------CCeEEEEeCCCceEEEE
Q 001157 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTM 876 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s------------dg~i~iwd~~~~~~~~~ 876 (1135)
. +..|............. ......++|+||+++++++. .++|.+||+.+++.+.+
T Consensus 235 ---~-----~~~~~~~~~~~~~~~~~-----p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 235 ---V-----DGPWSLLNDEDKAKNWV-----PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp ---E-----EEEEESCCHHHHHTTCE-----ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred ---e-----cccccccCccccccccc-----cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 0 00111111000000000 01112378999988877653 24799999999999999
Q ss_pred eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc--eEeEeecCccCceEEEEEcCCCC
Q 001157 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 877 ~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
+..+. +.+++|+| ++++|+++.. +.|.+||..++ +.+.++..+......++++|+|+
T Consensus 302 i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 302 IPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99877 99999999 8888888877 99999999999 99999877888889999999986
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.4e-16 Score=179.45 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=174.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc------------
Q 001157 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 474 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~------------ 474 (1135)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3468899999999999999888 99999997 665432 1122211 236679999999843344553
Q ss_pred -CCCcEEEEEcC-CCeeEEEec----CCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCC-CCCceE--Eec--CCCC
Q 001157 475 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 542 (1135)
Q Consensus 475 -~d~~i~iwd~~-~~~~~~~l~----~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~--~~~--~~~~ 542 (1135)
.++.+.+|++. +|+....+. .+...+.+++|+|++ ++++++. .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 576554443 256789999998865 7777665 46899999998 555432 233 2356
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC--CCcee---EEeeccc----C-C-------ceeEEE-EeCCCCEEE
Q 001157 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIK---RTYSGFR----K-R-------SLGVVQ-FDTTRNRFL 604 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~s~~~~~l~ 604 (1135)
.+..++|+|||++++++.. .++.|.+|++. +++.. ..+.... . . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 36789998764 56543 2222111 0 1 377899 999999988
Q ss_pred EEecC-C-----eEEEEECC-CCeeeEE---EeCCCCCCCcCeEEEec---CCCEEEEEeC-CCcEEEEECCCc
Q 001157 605 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~~~l~~~~~-dg~v~iw~~~~~ 664 (1135)
++..+ + .|.+|++. +++.... ..... ..+..++|+| ||++|++++. ++.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76532 2 89999996 5665432 32222 2467899999 8999999886 489999998655
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=1.3e-16 Score=182.67 Aligned_cols=282 Identities=9% Similarity=-0.026 Sum_probs=185.8
Q ss_pred eeEEEeecCCCeEEEEEeCCC--cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 349 VMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 349 V~~~~fspdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
+.+++|||||++++++...++ .|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 788999999996666554433 688889887764321 11222233448899999999999
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeE-------------------EEEecCCCceEEEEE-----cCCCcEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQLCIVTC-----GDDKMIKVW 482 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~d~~~~~l~s~-----~~d~~i~iw 482 (1135)
+.++.|++||+.+++... ....+...... +.|+|+++ .++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999999876432 22223332222 35677777 34333 456789999
Q ss_pred EcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCC
Q 001157 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGT 554 (1135)
Q Consensus 483 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~ 554 (1135)
|+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+....... +..+ ...+..++|+|||+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSS
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCC
Confidence 99988765444 56778899999882 22556665543 368888886554333 3222 33688899999999
Q ss_pred EEEEEeeCC-CCCceEEEEeCCCCceeEEeecccCCceeEEEEeC-CCCEEEEEe----------------cCCeEEEEE
Q 001157 555 RLFSCGTSK-EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG----------------DEFQIKFWD 616 (1135)
Q Consensus 555 ~l~~~~~~~-~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd 616 (1135)
+|+.++... ...+.|++||+.+++........ ... +.|+| +|+++++++ .++.|++||
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 887765421 11245999999988754433221 233 88999 999888754 347899999
Q ss_pred CCCCeeeEEEeCCCCC--------CCcCeEEEecCCCEEEEEeC-CCcEEEEEC
Q 001157 617 MDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~ 661 (1135)
+.+++........... ..+..++|+|||+.|+.++. ++...+|.+
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 327 TKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9888754333322110 02466899999998887765 455555543
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1.6e-15 Score=169.51 Aligned_cols=301 Identities=13% Similarity=0.195 Sum_probs=197.1
Q ss_pred CCCCEEEEEeeC--CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----------cCCeEEEEECC
Q 001157 551 ADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMD 618 (1135)
Q Consensus 551 ~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~ 618 (1135)
++++++++.... ...++.|++||..+++.+..+..... + .++|+|||++++++. .++.|.+||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 356666665421 11256899999999999888877643 3 799999999999986 36789999999
Q ss_pred CCeeeEEEeCCC----CCCCcCeEEEecCCCEEEEEeC--CCcEEEEECCCcchheee-ccCcccccCCCCCCCCcCCCC
Q 001157 619 NMNMLTTVDADG----GLPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRM-LEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 619 ~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+++.+..+.... .......++|+|||++|+++.. ++.|.+||+.++ +.... +...
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~----------------- 151 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAA----------------- 151 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGT-----------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCC-----------------
Confidence 999998887431 1124678999999999998864 589999999887 33333 2110
Q ss_pred ccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCC
Q 001157 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
T Consensus 152 -------------------------------------------------------------------------------- 151 (361)
T 2oiz_A 152 -------------------------------------------------------------------------------- 151 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEeCCc-ceeeeecccceeEEEeecccCCCCCCcccccc-cceeccCCCCCccccCCCCCCCCCCCeeEEEee
Q 001157 772 ASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANV-APQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1135)
Q Consensus 772 ~~~i~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s 849 (1135)
....+.+.|++ ..+++.+.||.+.+|++... ++..... ...+|+... .+ ..+.++
T Consensus 152 --~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~~~~~~~~~~~~~~~~---------------~~-~~~~~~ 208 (361)
T 2oiz_A 152 --GCWSVIPQPNRPRSFMTICGDGGLLTINLGED-----GKVASQSRSKQMFSVKD---------------DP-IFIAPA 208 (361)
T ss_dssp --TEEEEEECTTSSSEEEEEETTSSEEEEEECTT-----SSEEEEEECCCCSCTTT---------------SC-BCSCCE
T ss_pred --CcceeEEcCCCCeeEEEECCCCcEEEEEECCC-----CcEeeeccccceEcCCC---------------Cc-eEEEec
Confidence 00112233333 33455555566666654321 1111000 001222211 11 123446
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCce--EEEEeeCCC----------CCeeEEEEeCCCCcEEEEEeC-----------Ccc
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPP----------PAATFLAFHPQDNNIIAIGME-----------DSS 905 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~--~~~~~~~~~----------~~v~~l~~sp~~~~~lasg~~-----------dg~ 905 (1135)
+++..++..+ ++.|.++|+.... ....+.... .....++|+| +++.++++.. .+.
T Consensus 209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSE
T ss_pred ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCce
Confidence 7887777776 7899999987543 222222111 1122378999 6555555432 348
Q ss_pred EEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCCCceeEEEC
Q 001157 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 906 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
|.+||+.+++.+.++..+. +.+++|+|||++|++++. ++|.+||..++ +.+.. + ...| .....++|+
T Consensus 288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~--i-~~~G-----~~P~~~~~~ 356 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT--I-EGAA-----EASLQVQFH 356 (361)
T ss_dssp EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE--E-TTSC-----SSEEEEEEC
T ss_pred EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE--e-ccCC-----CCcEEEEec
Confidence 9999999999999999887 899999999999998887 99999999998 63321 1 1112 356889999
Q ss_pred CCCc
Q 001157 984 NDQT 987 (1135)
Q Consensus 984 pdg~ 987 (1135)
|||+
T Consensus 357 p~G~ 360 (361)
T 2oiz_A 357 PVGG 360 (361)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9986
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.2e-16 Score=180.57 Aligned_cols=317 Identities=13% Similarity=0.042 Sum_probs=197.7
Q ss_pred EeCCCCCceEEecCCCCe-----EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCC
Q 001157 526 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1135)
+|..++.....+..+... +..++|+|||++|+..... ++...|++||+.+++....... .......+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecC-CCCccccceECCCC
Confidence 466666666665544332 6678999999998877632 3456799999988876544333 22123347899999
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCC
Q 001157 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1135)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999899999999998876665553321 6677776665554444333320
Q ss_pred CCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCc
Q 001157 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1135)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEcCCCCCCCceEEEEEeCCcceeeeec-----ccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCC
Q 001157 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALA-----SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1135)
...++|+++.++... .+..|.+||+. ++..... ..
T Consensus 146 ----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~-~~- 185 (396)
T 3c5m_A 146 ----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVI-HQ- 185 (396)
T ss_dssp ----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEE-EE-
T ss_pred ----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEee-cc-
Confidence 011345555444432 33455555542 2221111 01
Q ss_pred CCCCCCCeeEEEeec-CCCEEEEEe-C------CeEEEEeCCCceEEEEeeCC--CCCeeEEEEeCCCCcEEEEEeCC--
Q 001157 836 SKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED-- 903 (1135)
Q Consensus 836 ~~h~~~~v~~l~~s~-dg~~la~~s-d------g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~~lasg~~d-- 903 (1135)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++... +..+ ...+..++|+| ++++|+.++.+
T Consensus 186 --~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 260 (396)
T 3c5m_A 186 --D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIP-DGSAMAYVSYFKG 260 (396)
T ss_dssp --E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred --C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECC-CCCEEEEEecCCC
Confidence 2 55688899999 888777765 2 368999987665433 3323 23578899999 78877766544
Q ss_pred ---ccEEEEEcccceEeEeecCccCceEEEEEcC-CCCeEEEEc----------------CCCcEEEEeCCCccccccee
Q 001157 904 ---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSRF 963 (1135)
Q Consensus 904 ---g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~----------------~D~~i~iWd~~~~~~~~~~~ 963 (1135)
+.|++||+.+++........ ... ++|+| ||+++++++ .+..|++||+.+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---E
T ss_pred CccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---E
Confidence 45999999988654332211 123 89999 999888754 3478999999887642 1
Q ss_pred eecCCCCC-----CCCCCceeEEECCCCcEEEEEE--CCcEEEEec
Q 001157 964 IQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDS 1002 (1135)
Q Consensus 964 ~~~~~~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~ 1002 (1135)
+....... .....+..++|+|||+.|+.+. ++...+|.+
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 22111100 0001245679999999988843 455555554
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.6e-13 Score=160.79 Aligned_cols=274 Identities=15% Similarity=0.100 Sum_probs=196.7
Q ss_pred eEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-
Q 001157 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN- 438 (1135)
Q Consensus 360 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~- 438 (1135)
.++++...++.|.++|..+++.+.+ + .....+.+++|||||+++++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~-------------------i-~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV-------------------L-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------E-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE-------------------E-eCCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4777788899999999999887653 1 123356789999999999999999999999996
Q ss_pred -CCCceeeeeEeecCCCCeeEEEEe----cCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-----------CCCeEE
Q 001157 439 -PTGELRQHLEIDAHVGGVNDIAFA----HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-----------EAPVYS 502 (1135)
Q Consensus 439 -~~~~~~~~~~~~~h~~~v~~l~~s----~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h-----------~~~v~~ 502 (1135)
+++.+. .+... .....++|+ |||+. ++++...+++|.|+|..+.+.+..+... ...+..
T Consensus 228 ~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 665544 34332 246799999 69994 3445556799999999999988876421 225777
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+..++... .++++...+|.|.++|.......... .........+.|+|+|++++++.. .++.|.++|..+++.+.
T Consensus 303 i~~s~~~~-~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEE
T ss_pred EEEcCCCC-EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEE
Confidence 87776543 56777777899999998765433221 123446778899999999988764 36779999999999887
Q ss_pred Eeec-ccCC-ceeEE-EEeCCCCEEEEEe--cCCeEEEEECCC-------CeeeEEEeCCCCCCCcCeEEEecCCCEEEE
Q 001157 582 TYSG-FRKR-SLGVV-QFDTTRNRFLAAG--DEFQIKFWDMDN-------MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 582 ~~~~-~~~~-~v~~~-~~s~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1135)
.+.. .... +-... .++|++..+++.+ .+++|.++|..+ .+.+.++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7765 2110 11122 2688865555443 568999999987 667888876532 2355788999999888
Q ss_pred EeC-------CCcEEEEECCCc
Q 001157 650 TTS-------DNGIKILANSDG 664 (1135)
Q Consensus 650 ~~~-------dg~v~iw~~~~~ 664 (1135)
... .++|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 663 358888887543
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=2.2e-13 Score=159.63 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=144.2
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC--CCCceEEecCCCCeEEE
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~ 546 (1135)
++++...+++|.++|..+++.+.++.. ...+..+.++|++ +++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 788889999999999999999988863 3456789998755 899999999999999995 6666666654 445689
Q ss_pred EEEc----CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc----------CCceeEEEEeCCCCEEEE-EecCCe
Q 001157 547 MAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFDTTRNRFLA-AGDEFQ 611 (1135)
Q Consensus 547 ~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~-~~~dg~ 611 (1135)
++|+ |||++++++.. ..+.+.++|..+.+.+..+.... ...+..+..++++..++. ...+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998875 46789999999999988766321 225677888888765554 557899
Q ss_pred EEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe-CCCcEEEEECCCc
Q 001157 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 664 (1135)
|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|+.++
T Consensus 322 v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999987653332221111 2456789999999887765 4789999998876
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=6.9e-15 Score=180.64 Aligned_cols=251 Identities=10% Similarity=-0.017 Sum_probs=176.6
Q ss_pred cccccCCCeeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCceeeeeEeecCCCCee---------EEEEe--cCCCceE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQLC 469 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~d~~~~~ 469 (1135)
.+.+|...|..++|++++.+++.. +.++...||....+...+ .+..|...+. ...|+ |||+ .
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~--~ 92 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG--P 92 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--C
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--e
Confidence 466799999999999887777777 558899999975554443 4556666666 66676 9999 5
Q ss_pred -EEEEc-CCCcEEEEEcC-CC-eeEEEecC-----CCCCeEEEEeccCCCccEEEEEEcC----------CeEEEEeCCC
Q 001157 470 -IVTCG-DDKMIKVWDVV-AG-RKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYDY 530 (1135)
Q Consensus 470 -l~s~~-~d~~i~iwd~~-~~-~~~~~l~~-----h~~~v~~l~~~~~~~~~~l~s~s~d----------g~i~~wd~~~ 530 (1135)
|+.++ .+..|.+|++. ++ .....+.. |...+..++|+|++ +.|++++.+ ..|++||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 55444 35667777765 02 34556665 66788899998865 888888877 5899999987
Q ss_pred C-----CceEEec-CCCCeEEEEEEcCCCCEEEEEeeCCC----CCceEEEEeCC-CCc--eeEEeecccCCceeEEEEe
Q 001157 531 L-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EGA--IKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 531 ~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~~--~~~~~~~~~~~~v~~~~~s 597 (1135)
. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++. ....+.......+..+.|+
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 2 3444555 55668888999999999998775332 13579999998 571 3334433333378899999
Q ss_pred CCCCEEEEEecCC--eEEEEECCCCeeeEEEeCCCCC------CCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 598 TTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 598 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
|||+.+++++.++ .|++||+.+++.......+... ..+..++|+++++++++++. +.+++|.+
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 9999777777777 6777777677654433322111 01457888888888888888 88888843
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=9.9e-15 Score=158.22 Aligned_cols=242 Identities=10% Similarity=0.106 Sum_probs=177.8
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeC------CCCCeeEEEEeCCCCcEEEEEeC-CccEEEEEc
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV 911 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~ 911 (1135)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.++.++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 45688999999999888776 8999999987 666666642 33568999995327777766643 88999999
Q ss_pred ccceEeEeec-CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEE
Q 001157 912 RVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1135)
Q Consensus 912 ~~~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 990 (1135)
.+++.+..+. .+...+.+++++|+|+++++...++.|.+||... +... .+.. .++. ..+..++++++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~~---~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKHL---EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTTC---SSEEEEEECSSSEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCcc---CCcEEEEECCCCCEEE
Confidence 5677666664 3446789999999999988888889999999653 3211 1111 1111 4578999999999766
Q ss_pred EE-ECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEecCCCceeeccCCCcccCccccCC
Q 001157 991 VV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVSS 1068 (1135)
Q Consensus 991 ~~-~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
+. .++.|.+||.+++.+..+.. .++...+..++++++|+++++...++ .|.+||. +++.+..+.. ..
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~---------~~ 248 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES---------KV 248 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE---------SS
T ss_pred EECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc---------cC
Confidence 64 47899999997666555432 23346789999999999888887776 9999995 4666655531 12
Q ss_pred CCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCC
Q 001157 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1069 ~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
....+..++++| +++++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 234577899999 7777776 67999999998653
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=6e-15 Score=163.18 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=183.2
Q ss_pred CCCeeEEEeecCCCEEEEEe-C------------------------CeEEEEeCCCceEEEEee-CCCCCeeEEEEeCCC
Q 001157 840 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 893 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~ 893 (1135)
-..+.+++++|+|+++++.. + ++|.+||..+++.+..+. ++-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999999887765 3446789999999 8
Q ss_pred CcEEEEEeCCccEEEEEcccce-EeEee---------cCccCceEEEEEcC-CCCeEEEEc-CCCcEEEEeCCCcccccc
Q 001157 894 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 961 (1135)
Q Consensus 894 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iWd~~~~~~~~~ 961 (1135)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.. ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999976542 45554 34555789999999 788888886 68999999944 443221
Q ss_pred eeeecCCC--CCCCCCCceeEEECCC-CcEEEE-EECCcEEEEecc-CCcccccCCCCCCCCCeEEEEEcc------CCC
Q 001157 962 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1030 (1135)
Q Consensus 962 ~~~~~~~~--~~~~~~~v~~~~fspd-g~~l~~-~~d~~i~vwd~~-~~~~~~~~~~~~h~~~i~~~~~s~------dg~ 1030 (1135)
........ .......+..++++|+ |.++++ ..++.|++||.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11110000 0001134789999999 554444 357889999995 776665532 34467888999999 333
Q ss_pred EEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
..++...+..|++|++.+|+.+..+... .++...+..++++| +++++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~--------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV--------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS--------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC--------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333334568999999999988776421 24557788999999 678999999999999999864
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.2e-14 Score=162.81 Aligned_cols=262 Identities=9% Similarity=0.110 Sum_probs=177.1
Q ss_pred CeeEEEeecCCCeEEEEEe--------CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC
Q 001157 348 NVMSMDFHPQQQTILLVGT--------NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.+..++| ||++++.+.. .++.|.+||+.+++... + ..+.+++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 5677778 8886655432 25689999998775321 2 45889999999
Q ss_pred CCEEEEEeCC---C--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-------------------
Q 001157 420 GLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------------------- 475 (1135)
Q Consensus 420 g~~la~~~~d---g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~------------------- 475 (1135)
|++||.++.+ + .|.+|++.+++... +..+.. +.+++|+|||+ .|+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeec
Confidence 9999988754 3 47788888765432 222333 99999999999 5655542
Q ss_pred --------CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCC-------eEEEEeCCCCCceEEecCC
Q 001157 476 --------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 476 --------d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~~~~ 540 (1135)
...|.+||+.+++.+..+.. . .+..++|+|+ | ++++++.++ ...+|.++ ......+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd--g-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD--K-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT--E-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC--e-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence 25799999999887555554 3 7888999874 4 677766542 44555555 3333333333
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCC----CCceEEEEeCCCCceeEEeecccCCceeE-EEEeCCCCEEEEEecCCeEEEE
Q 001157 541 GNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iw 615 (1135)
..+..+ +|||++|+.++.+.. ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++|
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence 444444 999999987764321 235788998 5554443333333 6775 8899 88 88888999999999
Q ss_pred ECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE-EEEECC
Q 001157 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 662 (1135)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v-~iw~~~ 662 (1135)
+.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 289 -~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 289 -IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 876665444332 23688899999 677777776665 777776
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=1.5e-10 Score=144.48 Aligned_cols=588 Identities=11% Similarity=0.073 Sum_probs=338.6
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++.-.++|. +. .|+.+| +..||-.+ |+.+...... + ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~~---~---~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGYA--------FTVYQHNEDD---P---NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSSC--------EEEECCCTTC---T---TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCCc--------eEEEeCCCCC---C---CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33 466665 56666332 1122110000 0 001245799999999988665
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCC----CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCC-CCC-
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 499 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h-~~~- 499 (1135)
|+.+| +..||..+++. . .+.... ..|.++...++|. +.+ ++. +.|..||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 88999877542 2 121111 1288999888886 344 443 45899998776543211111 112
Q ss_pred eEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
|.++.....+ .+..++.++.|..||..+.+..... ......|.++...+++...+... .+-|..||..+++
T Consensus 175 i~~i~~d~~g---~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGD---QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETT---EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCCC---CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 7777765432 4555666666888987765433221 12345788888888887666442 2228899988765
Q ss_pred eeEEeec------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-----CCCCCcCeEEEecCCCEE
Q 001157 579 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l 647 (1135)
...-... .....|.++...++|...+. +.+ -|.+|+..+++........ -....|.++...++|.+.
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW 324 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW 324 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE
Confidence 4432221 11236889988888875554 444 5889998877644332111 112357888888888754
Q ss_pred EEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcccc
Q 001157 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
.|+.++.|..|+..++ . +..+.....
T Consensus 325 -igt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 325 -LGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp -EEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred -EEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 5777778888876544 1 111110000
Q ss_pred CCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCC
Q 001157 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 807 (1135)
+.......|.++...++|. |-+++.++-+..|+......
T Consensus 351 ---------------------------------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~- 389 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF- 389 (795)
T ss_dssp ---------------------------------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE-
T ss_pred ---------------------------------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE-
Confidence 0000234578888888887 44456565566665432111
Q ss_pred CCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEee----CCCC
Q 001157 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM----SPPP 882 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~----~~~~ 882 (1135)
..+....+... ..+ . ...|.+++..++|+.|-+|. ++.|.+||..+++...... .+..
T Consensus 390 -----------~~~~~~~~~~~-~~l----~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 390 -----------TSYTLQEDESA-RGI----G-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp -----------EEECCC-------CC----S-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred -----------EEEecCCCCcc-cCC----C-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCC
Confidence 00000000000 000 1 45789999999999455555 6889999998876544322 1345
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC------ccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
.|.++...+ ++.+.+ |+.+ -+.+||..+++....... ....|.++...++|.+.+... +| |..||..++
T Consensus 453 ~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~ 527 (795)
T 4a2l_A 453 NVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGL 527 (795)
T ss_dssp CEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETT
T ss_pred eeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCC
Confidence 789999988 666554 4444 599999888765433211 235799999999998777555 44 888998775
Q ss_pred ccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCC-CCCeEEEEEccCCCEEEEE
Q 001157 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~dg~~l~s~ 1035 (1135)
+. . ..............|.++...++|.+.+.+.. .+..||........+....+. ...|.++...++|.+.+++
T Consensus 528 ~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 528 DI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred eE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 43 1 11000000011146888999999987666554 788899854444443222221 3468899999999866554
Q ss_pred ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1036 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
++-|..|+..+++.. .+....-++. ..-..-++...+ ++++.+ |+.+| +..++...
T Consensus 604 --~~Gl~~~~~~~~~~~-~~~~~dGl~~-----~~f~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 604 --NRGISCFNPETEKFR-NFTESDGLQS-----NQFNTASYCRTS-VGQMYF-GGING-ITTFRPEL 659 (795)
T ss_dssp --TTEEEEEETTTTEEE-EECGGGTCSC-----SCEEEEEEEECT-TSCEEE-EETTE-EEEECGGG
T ss_pred --CCceEEEcCCCCcEE-EcCCcCCCcc-----ccCccCceeECC-CCeEEE-ecCCc-eEEEcHHH
Confidence 456788898876543 3322111111 111113455555 665554 66666 55566643
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=1.2e-10 Score=145.50 Aligned_cols=535 Identities=10% Similarity=0.060 Sum_probs=319.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++...++|. +. .|+. +.+..||..+++... +... .......|.++...++|...+.
T Consensus 87 ~n~I~~i~~d~~g~-lW-igT~-~Gl~~yd~~~~~f~~------~~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VW-IGTR-DGLSRYDEEKDIFQN------FFYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EE-EEES-SCEEEEETTTTEEEE------ECCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EE-EEeC-CchheeCCCCCeEEe------cccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 44 3554 458999987654321 0000 0000012889998888876665
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecC-CCC-eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe-cCCCCCeEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~ 502 (1135)
. . +.+..||..+++... . ..++ ... |.++...+++. |..++.++-|..||..+++..... ......|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 458899987653211 0 0011 123 88888888886 344565556899998777654321 123466888
Q ss_pred EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-------CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 503 l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+..... ..+..++.++-+.+||..+.+....... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 876543 2455566555688899776543332211 245799999999988766542 2 38899988
Q ss_pred CCceeEEeec------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-----CCCCCcCeEEEecCC
Q 001157 576 EGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEG 644 (1135)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~ 644 (1135)
++........ .....|.++...++|. |..|+.++-|..|+..+.... .+... -....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7664432211 1223689999998886 445667777888987654432 22211 012357888888888
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+. .|+.++.|..|+..++ .. ..+......
T Consensus 369 ~lW-iGt~~~Gl~~~~~~~~-~~-~~~~~~~~~----------------------------------------------- 398 (795)
T 4a2l_A 369 NLW-IGTNDGGLNLYNPITQ-RF-TSYTLQEDE----------------------------------------------- 398 (795)
T ss_dssp CEE-EEESSSCEEEECTTTC-CE-EEECCC--------------------------------------------------
T ss_pred CEE-EEECCCCeEEEcCCCC-cE-EEEecCCCC-----------------------------------------------
Confidence 754 4777778889987655 11 111000000
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeeccc
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 804 (1135)
.. . ......|.++...++|+.|-+++.++-+.+|+....
T Consensus 399 ---------------------------------~~----~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 399 ---------------------------------SA----R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp --------------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred ---------------------------------cc----c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 00 0 002345788888888874555555555777764321
Q ss_pred CCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeC-----
Q 001157 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS----- 879 (1135)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~----- 879 (1135)
.. ..+...... + + ...|.++...++|++.+... +.+.+||..+++.......
T Consensus 438 ~~------------~~~~~~~~~-----l----~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 494 (795)
T 4a2l_A 438 QV------------ENFNQRNSQ-----L----V-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTP 494 (795)
T ss_dssp CE------------EEECTTTSC-----C----S-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCB
T ss_pred cE------------EEeecCCCC-----c----C-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccc
Confidence 11 001000000 0 2 56799999999888766555 5699999888765433211
Q ss_pred -CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeec-------CccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 880 -PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 880 -~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
+...|.++...+ ++.+.+ |+. +-|..||..+++. .+. .....|.++...++|.+.++.. .| |..|
T Consensus 495 ~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~ 567 (795)
T 4a2l_A 495 VVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF 567 (795)
T ss_dssp CCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred cCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence 235689999988 666655 444 4599999887765 222 2345799999999998766554 34 8889
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCC-CCe--EEEEEccC
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSCD 1028 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~-~~i--~~~~~s~d 1028 (1135)
|..+++.. ......+- +...|.++...++|.+.+++ ++.|..||.....+..+....+-. ..+ .++...++
T Consensus 568 d~~~~~~~---~~~~~~gl--~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~ 641 (795)
T 4a2l_A 568 NEKDKQIK---RYNTTNGL--PNNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSV 641 (795)
T ss_dssp ETTTTEEE---EECGGGTC--SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTT
T ss_pred CCCCCcEE---EeCCCCCC--chhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCC
Confidence 98775422 12222221 11457889999999876665 567888888555554443332222 222 56777889
Q ss_pred CCEEEEEecCCcEEEEecC
Q 001157 1029 GLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~ 1047 (1135)
|++++ |+.+| +..++.+
T Consensus 642 G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 642 GQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp SCEEE-EETTE-EEEECGG
T ss_pred CeEEE-ecCCc-eEEEcHH
Confidence 98655 55566 4445543
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=2.1e-14 Score=158.84 Aligned_cols=245 Identities=12% Similarity=0.082 Sum_probs=182.5
Q ss_pred CCeeEEEeecCCCeEEEEEeCC------------------------CcEEEEEcCCccccccccceeecccccccccccc
Q 001157 347 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+.|.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4789999999997 67777666 4688999887765431
Q ss_pred cccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEe---------ecCCCCeeEEEEec-CCCceEEE
Q 001157 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 471 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~l~~s~-d~~~~~l~ 471 (1135)
.-.++-.....++++|+|+++++...++.|++|+..... .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012344578899999999998888889999999986642 222 22 23445789999999 677 677
Q ss_pred EEc-CCCcEEEEEcCCCeeEEEecCC----------CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--
Q 001157 472 TCG-DDKMIKVWDVVAGRKQYTFEGH----------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1135)
Q Consensus 472 s~~-~d~~i~iwd~~~~~~~~~l~~h----------~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 538 (1135)
+.+ .++.|++|| .+|+.+..+... -.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 678887777422 2348899998762 3788888899999999998777776663
Q ss_pred CCCCeEEEEEEcCCCCEEEEEee---CCCCCceEEEEeCCCCceeEEee---cccCCceeEEEEeCCCCEEEEEecCCeE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1135)
.....+.+++++| +..+.+.+. .......|++||..+++.+..+. .+.. ....++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 433333321 01234579999999999998874 3333 68899999999777777789999
Q ss_pred EEEECCC
Q 001157 613 KFWDMDN 619 (1135)
Q Consensus 613 ~iwd~~~ 619 (1135)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=7.3e-15 Score=180.43 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=187.8
Q ss_pred CCCCeeEEEeecCCCeEEEEE--eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCee---------E
Q 001157 345 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 413 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~g--s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 413 (1135)
|...|..++|++++- +++.+ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 556899999998864 55555 5578899999644332221 333444444 5
Q ss_pred EEEc--CCCCE-EEEEeC-CCeEEEEEcC--C-CCceeeeeEeec-----CCCCeeEEEEecCCCceEEEEEcCC-----
Q 001157 414 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 476 (1135)
Q Consensus 414 v~~s--pdg~~-la~~~~-dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~s~~~d----- 476 (1135)
..|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 877654 4566666665 2 33 33 3334 667789999999999 67777766
Q ss_pred -----CcEEEEEcCC------CeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcC--------CeEEEEeCC-CC---C
Q 001157 477 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 532 (1135)
Q Consensus 477 -----~~i~iwd~~~------~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~---~ 532 (1135)
..|++||+.+ ++ ...+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 54 45565 666778888898865 888887755 379999998 45 3
Q ss_pred ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC-------ceeEEEEeCCCCEEEE
Q 001157 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~ 605 (1135)
.......+...+..++|+|||++++++. .++...|++||..+++.......+... .+..++|+|++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 3333334467899999999999555543 233447888888777765444333221 1457889999999999
Q ss_pred EecCCeEEEE--ECCCCeeeEEEeCCCCCCCcCeE-EEecCCCEEEEEeCCC--cEEEEECCCc
Q 001157 606 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDN--GIKILANSDG 664 (1135)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg--~v~iw~~~~~ 664 (1135)
++. +.+++| |+.+++ +..+..+ ...+..+ +++.+.-++++++.+. .|.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 655555 4555544 2245555 4433333334445454 4555566565
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.4e-13 Score=149.19 Aligned_cols=245 Identities=11% Similarity=0.078 Sum_probs=179.1
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe---ecCCCCeeEEEEe-cCCCceEEEEEc-CCCcEE
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCG-DDKMIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s-~d~~~~~l~s~~-~d~~i~ 480 (1135)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+.+++++ +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4433321110 1344578999995 6665 555553 388999
Q ss_pred EEEcCCCeeEEEecC-CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec--CCCCeEEEEEEcCCCCEEE
Q 001157 481 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~-h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 557 (1135)
+|| .+++.+..+.. +...+..+++++++ .++++...++.|.+||.. ++....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67887777643 44678999997754 788887888999999964 44444443 3345789999999998666
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEecCC-eEEEEECCCCeeeEEEeCCCCCCCc
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+.. .++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+
T Consensus 180 ~~~----~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDN----RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEG----GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EEC----CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 654 3678999997 466666665432 12678899999998888887775 9999996 46666777654433346
Q ss_pred CeEEEecCCCEEEEEeCCCcEEEEECCCc
Q 001157 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987766 67999999987543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.4e-13 Score=152.96 Aligned_cols=273 Identities=11% Similarity=0.056 Sum_probs=188.4
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
..|+++.|+|++.. ++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 46788899999873 55556788888883 222211 33466678999999999988888
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCeeEEEec--CCCCCe
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 500 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l~--~h~~~v 500 (1135)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876432 2224567899999999998 67776666 689999988877553433 245678
Q ss_pred EEEEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC
Q 001157 501 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
..+++++++ .++++... .+.|..||.++++... +......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~~g--~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCCC--CEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 999998754 66666553 3556666655433322 2222335788999999997766542 3567999998
Q ss_pred CC-CceeEEe------ecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC----CCCcCeEEEecC
Q 001157 575 SE-GAIKRTY------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKE 643 (1135)
Q Consensus 575 ~~-~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~ 643 (1135)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 4333221 1111125778999999998888778899999998 4666666654321 124789999999
Q ss_pred CCEEEEEeCCC
Q 001157 644 GSLLAVTTSDN 654 (1135)
Q Consensus 644 ~~~l~~~~~dg 654 (1135)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.7e-13 Score=168.92 Aligned_cols=249 Identities=9% Similarity=0.003 Sum_probs=177.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCccc
Confidence 4555788999999999999876543 899999999875542 222 22367899999999 6777776665
Q ss_pred --------------EEEEEcCCCe----eEEEecCCCCCeEEEEeccCCCccEEEEEEc-----CCeEEEEeCCC-----
Q 001157 479 --------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY----- 530 (1135)
Q Consensus 479 --------------i~iwd~~~~~----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~-----dg~i~~wd~~~----- 530 (1135)
|++|++.++. .+.....|...+..+.|+|++ ++|+.++. +..|++||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECccccccc
Confidence 9999998876 232333356668889998765 77777664 56899999986
Q ss_pred -CC-ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccC-CceeEEEEeCCCCEEEE
Q 001157 531 -LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 531 -~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~s~~~~~l~~ 605 (1135)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..+++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 43 34455555544444 58899999887764333366899999987742 344544433 36778899977777777
Q ss_pred EecCCe--EEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe----CCCcEEEEECCCcc
Q 001157 606 AGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDGV 665 (1135)
Q Consensus 606 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~~~ 665 (1135)
...++. |++|++.+++.+..+..+ ...+..++++|++..++... ..++++.||+.++.
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888874 666787778877777765 33677888999987666442 24789999998873
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.3e-13 Score=153.27 Aligned_cols=274 Identities=13% Similarity=0.072 Sum_probs=187.2
Q ss_pred CceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC
Q 001157 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg 852 (1135)
..+.+++|++++..++....++.++.|.-. .... +.. + ...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTS
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCC
Confidence 456778899999888888788888877211 0000 111 2 4567899999999
Q ss_pred CEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC----ccEEEEEcccceEeEeec--CccC
Q 001157 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQN 925 (1135)
Q Consensus 853 ~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~ 925 (1135)
++++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|++||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9877776 78999999998887665545667899999999 78888777666 689999998876543332 3456
Q ss_pred ceEEEEEcCCCCeEEEEcC------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE--CCcE
Q 001157 926 RITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQI 997 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i 997 (1135)
.+.+++++|+|+++++... .+.|..||..+++... ..... ..+..++|+|||+.|+++. ++.|
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeE
Confidence 7899999999998887764 3456666665544211 11110 2467899999999776643 6889
Q ss_pred EEEecc--CCccccc-----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCC
Q 001157 998 SVYDSK--LECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNT 1070 (1135)
Q Consensus 998 ~vwd~~--~~~~~~~-----~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1135)
.+||.. +..+..+ ....++ ..+..++++++|+++++...++.|.+||. +++.+..+.... . ..+|.
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~----~-~~g~~ 279 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG----R-DEGHM 279 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT----G-GGTCS
T ss_pred EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC----C-ccccc
Confidence 999983 3332211 111111 46788999999998888777899999998 466665553111 0 01233
Q ss_pred CCcEEEeeCCCCCCEEEEEecCC
Q 001157 1071 AHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1071 ~~~~~~~~sp~~~~~l~s~~~Dg 1093 (1135)
..+.+++|+| +++.|+.++.++
T Consensus 280 ~~~~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 280 LRSTHPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CBCCEEEECT-TSCEEEEEEECG
T ss_pred cCcceEEECC-CCCEEEEEeCcc
Confidence 3678999998 666666555553
No 185
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=2.5e-09 Score=133.21 Aligned_cols=594 Identities=11% Similarity=0.100 Sum_probs=337.0
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++.-.++|. |-.|+.+| +..||-.+ |+.+..... ... ...-....|.++...++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~-~~~---~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQ-SSS---VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSS-CSS---SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCC-CCc---cccccccccceEEEcCCCCEEEE
Confidence 35799999999996 33466665 66677332 112211000 000 00012356999999888884556
Q ss_pred EeCCCeEEEEEcCCCCceeeeeE-eec---CCCCeeEEEEec--CCCceEEEEEcCCCcEEEEEcCCCeeEEEecC----
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLE-IDA---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG---- 495 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~-~~~---h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---- 495 (1135)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++.|..+|..+++... +..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCccc
Confidence 77774599999887542211000 000 123588888777 665 4445545568899987776543 321
Q ss_pred --CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001157 496 --HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 496 --h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
....|.++..... ..|..++.++-+..||..+.+..... ......|.++...++|...+... .
T Consensus 159 ~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~ 230 (781)
T 3v9f_A 159 ALPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K 230 (781)
T ss_dssp TCSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T
T ss_pred CCCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C
Confidence 1345777776443 34555777767888987765432211 11235789999999888776541 2
Q ss_pred ceEEEEeCCCCceeEEeec------ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe-------CC----
Q 001157 567 SHLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD---- 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~---- 629 (1135)
-+.+||..+++...-... .....|.++...++|. |..|+..+-|.+++..+++...... ..
T Consensus 231 -Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 308 (781)
T 3v9f_A 231 -GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNY 308 (781)
T ss_dssp -EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTT
T ss_pred -cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCC
Confidence 489999877654322111 1223688888888775 5556664668889987765332211 10
Q ss_pred -CCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCC
Q 001157 630 -GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1135)
Q Consensus 630 -~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1135)
-....|.++...++|.+ -.|+.++.|..++..++ . +..+......
T Consensus 309 ~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~~------------------------------- 354 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPP-T-FHTWSYSPTQ------------------------------- 354 (781)
T ss_dssp SBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCC-S-CEEEC----C-------------------------------
T ss_pred CCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCC-c-ceeeccCccc-------------------------------
Confidence 11235778888888864 45676777888876544 1 1111100000
Q ss_pred CCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceee
Q 001157 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1135)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 788 (1135)
+ .+.......|.++...++|. |-
T Consensus 355 ------------------------------------------~--------------~~~~l~~~~v~~i~~d~~g~-lW 377 (781)
T 3v9f_A 355 ------------------------------------------M--------------NESSLSNKVVSSVCDDGQGK-LW 377 (781)
T ss_dssp ------------------------------------------C--------------CSSCCSSSCEEEEEECTTSC-EE
T ss_pred ------------------------------------------c--------------ccCCCCCcceEEEEEcCCCC-EE
Confidence 0 00000234578888888887 44
Q ss_pred eecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeC
Q 001157 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 868 (1135)
Q Consensus 789 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~ 868 (1135)
+++.++-+..|+...... ..+. .. ..+ . ...|.+++..++|.+.+...++.+..+|.
T Consensus 378 igt~~~Gl~~~~~~~~~~------------~~~~-~~-----~~~----~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVA------------IYNK-EN-----REL----L-SNSVLCSLKDSEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp EEEBSSCEEEEETTEEEE------------ECC-----------C----C-CSBEEEEEECTTSCEEEEETTEEEEEECS
T ss_pred EEeCCCcEEEEECCCCeE------------EEcc-CC-----CCC----C-CcceEEEEECCCCCEEEEeccCCEEEEcC
Confidence 555445566665432111 0000 00 000 2 56799999988888776444678999998
Q ss_pred CCceEEEEee--CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCc-----cCceEEEEEcCCCCeEEE
Q 001157 869 MTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVS 941 (1135)
Q Consensus 869 ~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~i~~l~~s~d~~~l~s 941 (1135)
.+++...... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 8776543221 1346799999888 666554 555 45899998877643332212 467999999999987765
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCC-CCCe
Q 001157 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPI 1020 (1135)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h-~~~i 1020 (1135)
...+| |..||..+++... +....+ .....|.++...++|.+.+.+.+|-|..||........+....+- ...|
T Consensus 512 t~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i 585 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHI 585 (781)
T ss_dssp ESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCC
T ss_pred EcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceE
Confidence 54455 7889887654211 111111 122568899999999877766644448888854444433222211 3468
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1021 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1021 ~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
.++...++|.+.++ +.+| |..++..+++. ..+....-++. ..-..-++...+ ++++++ |+.+| +..++.
T Consensus 586 ~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~-~~~~~~dGl~~-----~~f~~~~~~~~~-~G~l~~-g~~~G-l~~f~p 654 (781)
T 3v9f_A 586 RAISEDKNGNIWAS-TNTG-ISCYITSKKCF-YTYDHSNNIPQ-----GSFISGCVTKDH-NGLIYF-GSING-LCFFNP 654 (781)
T ss_dssp CEEEECSSSCEEEE-CSSC-EEEEETTTTEE-EEECGGGTCCS-----SCEEEEEEEECT-TSCEEE-EETTE-EEEECS
T ss_pred EEEEECCCCCEEEE-cCCc-eEEEECCCCce-EEecccCCccc-----cccccCceEECC-CCEEEE-ECCCc-eEEECh
Confidence 89999999986554 4455 77788876543 23321111111 111122455555 665554 66676 556676
Q ss_pred CC
Q 001157 1101 SD 1102 (1135)
Q Consensus 1101 ~~ 1102 (1135)
..
T Consensus 655 ~~ 656 (781)
T 3v9f_A 655 DI 656 (781)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=1.5e-13 Score=153.74 Aligned_cols=220 Identities=10% Similarity=0.092 Sum_probs=153.3
Q ss_pred CeeEEEeecCCCEEEEEe-C---Ce--EEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC------------
Q 001157 842 SAACIALSKNDSYVMSAS-G---GK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED------------ 903 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-d---g~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d------------ 903 (1135)
.+..++|||||++||..+ + +. |.+||+.+++.......+ . +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 367899999999999886 2 33 888899888776655533 3 99999999 88888877632
Q ss_pred ---------------ccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCC-------cEEEEeCCCcccccc
Q 001157 904 ---------------SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKS 961 (1135)
Q Consensus 904 ---------------g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-------~i~iWd~~~~~~~~~ 961 (1135)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...+|.+.+++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78899999999 877776542 3455544443321
Q ss_pred eeeecCCCCCCCCCCceeEEECCCCcEEEEEE-C--------CcEEEEeccCCcccccCCCCCCCCCeEE-EEEccCCCE
Q 001157 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISS-AIYSCDGLL 1031 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~h~~~i~~-~~~s~dg~~ 1031 (1135)
.+... + .+.. ++|||++|+... + ..|.+|| +++.. .+. .+|...+.. +.|+ || +
T Consensus 212 -~l~~~-~------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~-~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMFEK-V------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM-GIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEEEE-E------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE-ESS--TTCCSEEEEEEEET-TE-E
T ss_pred -EeccC-c------ceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceE-ecc--ccCCcccCCccEEc-Cc-E
Confidence 11111 1 2233 399999888743 3 3588888 44332 222 234667886 9999 98 8
Q ss_pred EEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcE-EEEecC
Q 001157 1032 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAV-HVVEPS 1101 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i-~lW~~~ 1101 (1135)
+++++.++.+++| +.+++....+ .+...+..++|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~------------~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIA------------KGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEE------------CSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEe------------cCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 8999999999999 8866543222 2246678899998 577888777765 777775
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=2.8e-13 Score=167.07 Aligned_cols=247 Identities=9% Similarity=-0.006 Sum_probs=172.4
Q ss_pred CCeeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. .+ ....+..++|+|||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~--~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VL--ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EE--EEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cc--cCcccceEEEEeCCCE
Confidence 35889999999996555444444 899999999876531 01 1123678999999999
Q ss_pred EEEEeCCCe----------------EEEEEcCCCCcee-eeeEeecCCCCeeEEEEecCCCceEEEEEcC-----CCcEE
Q 001157 423 LGVAFSKHI----------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIK 480 (1135)
Q Consensus 423 la~~~~dg~----------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~ 480 (1135)
|+.++.++. |++|++.++.... .......|...+..+.|+|||+ +|+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEEE
Confidence 999988766 9999998875321 1112223556688999999999 5555443 67899
Q ss_pred EEEcCC------Ce-eEEEecCCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCc--eEEecCCCC--eEE
Q 001157 481 VWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGS--RVDYDAPGN--WCT 545 (1135)
Q Consensus 481 iwd~~~------~~-~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~--~~~~~~~~~--~v~ 545 (1135)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+.+ +.|.+||+.++.. ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 45666667666655 366654 555554442 3699999987652 233433433 788
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCCe
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 621 (1135)
.++|++++.++++... ++...|++||+.+|+.+..+..+. ..+..+.++|+++.++... ..++|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~-~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC-ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8999876666666654 334568889987888777787763 3788899999997766432 45799999998877
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.3e-13 Score=169.47 Aligned_cols=249 Identities=10% Similarity=-0.046 Sum_probs=168.9
Q ss_pred cccCCCeeEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc-
Q 001157 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spdg~~la~~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~- 478 (1135)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 3566679999999999999954 4457899999999875411 011111 126899999999 7888877766
Q ss_pred ------------EEEEEcCCCe----eEEEecCCCCCeEEEEeccCCCccEEEEEEcCC----eEEEEeCCCCCceEEec
Q 001157 479 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 ------------i~iwd~~~~~----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~~~ 538 (1135)
|++|++.++. ++.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999998876 344444566788899998865 7777777665 67777655443 33344
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeeccc-CCceeEEEEeCCCCEEEEEecCCeEEEE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw 615 (1135)
.+...+....+ ++|+ ++..+.....++.|.+||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44444555556 6777 555543222468899999987753 23333332 4367888888 66777788899988888
Q ss_pred ECC-CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC----CCcEEEEECCCcc
Q 001157 616 DMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDGV 665 (1135)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iw~~~~~~ 665 (1135)
.+. +++....+..+. ...+..++++|++..++.... .++|++||+.++.
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 355555554331 235677888999987774432 4789999998873
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.2e-11 Score=134.84 Aligned_cols=281 Identities=9% Similarity=-0.031 Sum_probs=195.2
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+...+.+++++++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|...+
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 346899999999997 66655557899999987 542210 0112446789999999999888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~~l 503 (1135)
+...++.|..|+.. ++ ... ..+......+.++++.++|. ++++...++.|.+||. +++... .+..+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999976 33 221 12223455789999999998 6777777889999998 665443 233345678899
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.++ |.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++...
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~- 217 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITE- 217 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEE-
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEE-
Confidence 98765 467777767889999998 4443322 333445788999999998666543 3567999998 666443
Q ss_pred eecc-cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 583 YSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
+... ....+..++++++|+.+++...++.|..||. +++ +..+....+...+.++++ ++|.+.++.. .+.+..++.
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 3221 2236889999999986666657889999998 454 334433333346788999 8888776654 567777776
Q ss_pred CCc
Q 001157 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
.++
T Consensus 294 ~~~ 296 (299)
T 2z2n_A 294 IKD 296 (299)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1e-12 Score=143.04 Aligned_cols=241 Identities=7% Similarity=-0.010 Sum_probs=172.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+.....+++|+|+|+.+++++..++.|..|+..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 45578899999999878888999999999999876 221 234567799999999999888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEE----c-------------CCCcEEEEEcCC
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTC----G-------------DDKMIKVWDVVA 486 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~----~-------------~d~~i~iwd~~~ 486 (1135)
+...++.|.+||..+++.........+ ....+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 877789999999987764321111111 123567899999998 67763 2 12355555544
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-CCCc---eEEecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
++ +..+..+......++|+|++ +.+++.+.++.|.+|++. .+.. ...+......+.+++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 44455677778999998765 667777888999999987 3332 22333344566789999999876665
Q ss_pred CCCCceEEEEeCCCCceeEEeecccCCceeEEEE-eCCCCEEEEEecCCeEEEEECCCCee
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3469999986 788787876654 788889 5899999988765 455566665543
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=9.9e-13 Score=144.98 Aligned_cols=278 Identities=12% Similarity=0.004 Sum_probs=190.0
Q ss_pred CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeee
Q 001157 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~ 446 (1135)
.+++|.+||..+++..... +... . -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~-------n--~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRA-------N--GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHH-------H--SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhh----Hhhh-------c--CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 3789999999998765420 0000 0 01122345677773 45555666668999999999988766
Q ss_pred eEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCC-----CCeEEEEeccCCCccEEEEEE-cC
Q 001157 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA-ID 520 (1135)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~-----~~v~~l~~~~~~~~~~l~s~s-~d 520 (1135)
.+. .......++++++++ +.++...++.|.+||..+++....+.... .....+++ . ++..+++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 345688999999985 56666579999999999999887775433 14456666 2 224444443 48
Q ss_pred CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC------CceEEEEeCCCCceeEEeecccCCceeEE
Q 001157 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1135)
+.|.+||..+++....+... .....++++|+|++++++..+.+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988776666543 345688999999876665421000 26899999999998877765333357889
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec-CCCEEEEE----eCCCcEEEEECCCcchhee
Q 001157 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~----~~dg~v~iw~~~~~~~~~~ 669 (1135)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.++
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988754 89999998877532111111123567899999 56666665 568899999987 6 5555
Q ss_pred ecc
Q 001157 670 MLE 672 (1135)
Q Consensus 670 ~~~ 672 (1135)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=9.7e-13 Score=143.19 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=170.4
Q ss_pred ccccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 404 LNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+..+.....+++|+|+|+ +++++..++.|..|+..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334556688999999999 7778888999999999886 33 4455777899999999998 77777778899999
Q ss_pred EcCCCeeEEEecCC----CCCeEEEEeccCCCccEEEEEEc-----------------CCeEEEEeCCCCCceEEecCCC
Q 001157 483 DVVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 483 d~~~~~~~~~l~~h----~~~v~~l~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~ 541 (1135)
|..+++........ ...+..++++++ |.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433211 234567888764 477777321 2355555544 4444445556
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC-CCce---eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
.....++|+|+++.+++.. .++.|++|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6778999999999984443 36789999986 5555 3444 2233356779999999866666 889999998
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEE-ecCCCEEEEEeCCCcEEEEECCCc
Q 001157 618 DNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
. ++.+..+..+.. +.+++| .|+++.|++++.+ .+.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 7 777777775533 789999 5899989888876 4444455443
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=3.7e-13 Score=143.49 Aligned_cols=251 Identities=12% Similarity=0.046 Sum_probs=184.0
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCcc-Cce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i 927 (1135)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++|+ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 467888887 8999999999999999999776 5789999999 888888 45778999998 899999988753 578
Q ss_pred EEEEEcCCCCeEEEEcC-CCcEEEEeCCCcccccceeeecC-CCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccC
Q 001157 928 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1004 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~ 1004 (1135)
.++.+.+||+++++.+. ++.|..+|. +++.+....+... .++. .....+++.++|+++++. .++.|.+||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777877876 4554333222211 1111 245567889999999884 689999999987
Q ss_pred CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCC
Q 001157 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPN 1084 (1135)
Q Consensus 1005 ~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 1084 (1135)
+.+..+... ....++.+.++|.++++++.+++|..+|..+|+.+-++..... + ......+..++..+ +++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~----~~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E----GVQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B----SCCCSEEEEEEECT-TSC
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C----CccccccccceEcC-CCC
Confidence 776665432 3455678889999999988888999999999999877742110 0 01224567788888 778
Q ss_pred EEEEEecC--------CcEEEEec-CCCccccCCCCCCCCCCCC
Q 001157 1085 QIALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLP 1119 (1135)
Q Consensus 1085 ~l~s~~~D--------g~i~lW~~-~~~~~~~~~~~~~~~~~~~ 1119 (1135)
++++.... +..++.++ .+++-.|+.....+-+.++
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIS 269 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCC
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCccccccee
Confidence 88776311 23356666 4667777766665555544
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.1e-12 Score=140.62 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=167.0
Q ss_pred CeeEEEeecCCCEEE-EEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 842 SAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la-~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|++||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999776 434 78999999876543322223345688999999 777666555 88999999876553322
Q ss_pred ecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEE
Q 001157 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 998 (1135)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~ 998 (1135)
.......+.+++++++|+++++...++.|.+|+..+.... . ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~-~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----V-LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----E-CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----e-ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2233356899999999998888888889999976553321 1 11111 1356889999999866664 468999
Q ss_pred EEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEee
Q 001157 999 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... .. ..+...+..+++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP----------FTGLNTPLAVAV 241 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC----------CCSCSCEEEEEE
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec----------cCCCCCceeEEE
Confidence 99995544333221 113678899999999877777778999999997654322 11 122256889999
Q ss_pred CCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+| +++++++...+++|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 67888999999999999997655
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=9.2e-13 Score=145.24 Aligned_cols=241 Identities=11% Similarity=0.064 Sum_probs=171.0
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 919 (1135)
.....+++.. +++.++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3456777743 44444444 7999999999999998886 346789999998 676555554899999999999998877
Q ss_pred ecCcc-----CceEEEEEcCCCCeEEEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE
Q 001157 920 LKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1135)
Q Consensus 920 l~~h~-----~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1135)
+.... .....+++ .+++.+++.. .++.|.+||..+++...... . + .....++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~--~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT--I--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE--C--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE--c--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567777 4455555544 48899999999987543321 1 1 2356889999999777743
Q ss_pred -C----------CcEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCccc
Q 001157 994 -E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061 (1135)
Q Consensus 994 -d----------~~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~ 1061 (1135)
+ +.|.++|. +.+....+.... ......++|+||+++|+++.. .|.+||..+++..... ..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~ 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FL 262 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SB
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----ee
Confidence 3 68999999 444443433221 236889999999999988764 8999999988764211 11
Q ss_pred CccccCCCCCCcEEEeeCCCCCCEEEEE----ecCCcEEEEecCCCccccC
Q 001157 1062 PTYAVSSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~sp~~~~~l~s~----~~Dg~i~lW~~~~~~~~~~ 1108 (1135)
+ .....+..++++|+++++.++. ..+++|.+||.. ++..+.
T Consensus 263 ~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 263 E-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp C-----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred c-----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 1 1135788999999777777777 678999999997 664443
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=2.3e-11 Score=132.56 Aligned_cols=280 Identities=10% Similarity=0.073 Sum_probs=191.9
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
+...+.++++.++|...++...++.|.+|+.. +......... + ...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECC
Confidence 45678999999999977776667888888642 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEE-EEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i 927 (1135)
+|++.++.. ++.|..||.. ++.. ..+......+..+++++ ++.++++...++.|..||. +++.... +..+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888776 7889999986 4332 22223456789999999 7888887777889999998 5554332 33345678
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
.++++.++|+++++...++.|..||. +++... ..... .. ..+..++++++|++.++. .++.|.+||.++.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPT-PA---SGPVGITKGNDDALWFVEIIGNKIGRITTSGE- 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCC-
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCC-CC---CcceeEEECCCCCEEEEccCCceEEEECCCCc-
Confidence 99999999998888877889999998 554321 11111 11 457899999999966664 3678999998333
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
+..+.. ..+...+.+++++++|+++++...++.|.+||. +++. ..+. . ..+...+.++++ + ++++.
T Consensus 215 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~----~-----~~~~~~~~~i~~-~-~g~l~ 280 (299)
T 2z2n_A 215 ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYP----I-----QIKSAEPHGICF-D-GETIW 280 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEE----C-----SSSSCCEEEEEE-C-SSCEE
T ss_pred EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEe----C-----CCCCCccceEEe-c-CCCEE
Confidence 332211 123567899999999997776657889999998 4543 2221 1 123356788888 6 77776
Q ss_pred EEEecCCcEEEEecCCC
Q 001157 1087 ALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~~~ 1103 (1135)
++.. .+.|..++..+.
T Consensus 281 v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 281 FAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEET-TTEEEEEEEC--
T ss_pred EEec-CCcEEEEEcCcc
Confidence 6554 677888887654
No 197
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.7e-09 Score=131.59 Aligned_cols=541 Identities=10% Similarity=0.063 Sum_probs=312.0
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC--CCCEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~la 424 (1135)
..|.++...++|..|. +|+.++.+..||..+++... +.... ... ..-....|.++.... +|.. .
T Consensus 66 n~I~~i~~d~~g~~lW-igt~~~Gl~~~d~~~~~f~~------~~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW-IATQRAGLNAYNYETQSFSV------YQYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEEE-EEESSSCEEEEETTTTEEEE------ECCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEEE-EEeCCCCcceECCCCCeEEe------ecccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 3589999999886133 46666579999988765321 10000 000 001124688888877 6654 4
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeE--ee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecC------
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLE--ID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG------ 495 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~--~~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~------ 495 (1135)
.++.++.+..||..+++... ... .. -....|.++...++|. |..|+.++-|..||..+++...-...
T Consensus 132 i~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 45544458889987653221 100 00 1134588888888776 44466565688999877764322110
Q ss_pred -CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 496 -HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 496 -h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
....|.++.... +|. |..++.+ -+.+||..+....... ......|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 135688887644 334 4445555 6888987654432211 12345799999988887665432 12
Q ss_pred eEEEEeCCCCceeEEee-------------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe-------
Q 001157 568 HLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------- 627 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 627 (1135)
-|.++|..++....... .-....|.++...++|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 38889987665432111 11233688898888876 5556667778889887654322211
Q ss_pred CCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccC
Q 001157 628 ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIA 707 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1135)
..-....|.+++..++|.+. .|+.++.|..|+..++ . ...+....
T Consensus 358 ~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~-------------------------------- 402 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-V-AIYNKENR-------------------------------- 402 (781)
T ss_dssp SCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-E-EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-e-EEEccCCC--------------------------------
Confidence 01112357788888777654 5666677888887554 1 11100000
Q ss_pred CCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCccee
Q 001157 708 PTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL 787 (1135)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 787 (1135)
......|.++...++|...
T Consensus 403 -------------------------------------------------------------~~~~~~v~~i~~d~~g~lW 421 (781)
T 3v9f_A 403 -------------------------------------------------------------ELLSNSVLCSLKDSEGNLW 421 (781)
T ss_dssp --------------------------------------------------------------CCCSBEEEEEECTTSCEE
T ss_pred -------------------------------------------------------------CCCCcceEEEEECCCCCEE
Confidence 0023457888888788744
Q ss_pred eeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEe
Q 001157 788 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFN 867 (1135)
Q Consensus 788 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd 867 (1135)
+ ++.++-+..++.. ++......... .. ...|.++...++|++.+... +.|..||
T Consensus 422 i-gt~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 422 F-GTYLGNISYYNTR----------------------LKKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp E-EETTEEEEEECSS----------------------SCEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred E-EeccCCEEEEcCC----------------------CCcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 4 5554456666432 22111110000 02 56789999988888666544 6799999
Q ss_pred CCCceEEEEeeCC-----CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC---ccCceEEEEEcCCCCeE
Q 001157 868 MMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNAL 939 (1135)
Q Consensus 868 ~~~~~~~~~~~~~-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l 939 (1135)
..+++........ ...|.+++..+ ++.+.+ |+.++-|..||..+++...-... ....|.++...++|.+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred CCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEE
Confidence 8876544333222 35789999988 666554 55544488899877654332111 23568999999999877
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCC-
Q 001157 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA- 1018 (1135)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~- 1018 (1135)
++.. +|.|..||..+++.. ......+-. ...+.++...++|.+.+++ ++.|..++.....+..+....+-..
T Consensus 554 i~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~ 626 (781)
T 3v9f_A 554 LATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWAST-NTGISCYITSKKCFYTYDHSNNIPQG 626 (781)
T ss_dssp EEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEEEECGGGTCCSS
T ss_pred EEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEc-CCceEEEECCCCceEEecccCCcccc
Confidence 7655 675488888775521 122222211 1457889999999876665 4457888885555544433222221
Q ss_pred --CeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1019 --PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1019 --~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
...++...+||++++ |+.+| +..++-+.
T Consensus 627 ~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred ccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 235677788998655 56677 55566543
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=4.7e-13 Score=164.49 Aligned_cols=248 Identities=8% Similarity=-0.084 Sum_probs=163.4
Q ss_pred CCCeeEEEeecCCCeEEEEEeC----CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 346 GSNVMSMDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
...+.+++|||||++++++.+. +..|++||+.+++.+.... +.+. ....++|+|||+
T Consensus 120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-----------------~~~~--~~~~~~wspDg~ 180 (695)
T 2bkl_A 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-----------------IEGG--KYATPKWTPDSK 180 (695)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-----------------BSCC--TTCCCEECTTSS
T ss_pred CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-----------------cCcc--cccceEEecCCC
Confidence 3468999999999965554433 3579999999987641100 1111 126799999999
Q ss_pred EEEEEeCCCe-------------EEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC----cEEEEE
Q 001157 422 MLGVAFSKHI-------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKVWD 483 (1135)
Q Consensus 422 ~la~~~~dg~-------------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~----~i~iwd 483 (1135)
.|+.++.|.. |++|++.++... ........|...+.++.|+|||+ +|+.++.++ .|.+||
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~~~ 258 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYWKR 258 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEEEC
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEEEc
Confidence 9999988776 999999987632 12223334566789999999999 455555444 677776
Q ss_pred cCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEE---cCCeEEEEeCCCCCc---eEEecCC-CCeEEEEEEcCCCCEE
Q 001157 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGTRL 556 (1135)
Q Consensus 484 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~~l 556 (1135)
..++. ...+..+...+....+ +++ .+++... .++.|.+||+.+++. ...+..+ ...+..++++ ++..+
T Consensus 259 ~~~~~-~~~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 259 PGEKD-FRLLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp TTCSS-CEEEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred CCCCc-eEEeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 65554 4455556666666665 333 5444443 258899999987653 3333333 4568888888 55556
Q ss_pred EEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe----cCCeEEEEECCCCee
Q 001157 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1135)
++... ++...|.++++ +++....+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 334 ~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 334 LEYLK--DATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE--TTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE--CCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66553 22334445554 35566666655344677788999998777432 457899999998774
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=2.1e-12 Score=137.67 Aligned_cols=243 Identities=11% Similarity=0.044 Sum_probs=178.8
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~~~~dg~i~iwd~~~ 439 (1135)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 788999999999999999987643 22233 4688999999999988 45788999999 7
Q ss_pred CCceeeeeEeecC-CCCeeEEEEecCCCceEEEEEcC-CCcEEEEEcCCCeeEEEecC------CCCCeEEEEeccCCCc
Q 001157 440 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 511 (1135)
Q Consensus 440 ~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~l~~------h~~~v~~l~~~~~~~~ 511 (1135)
++.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++. .+|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~--~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN--KKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC--TTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC--CCC
Confidence 77665 34433 34688999999999 7777776 778888884 7888777642 11233344444 456
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC---
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 588 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 588 (1135)
+++++.+.++.|..||.+ ++.+..+... ....++...++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 8887777654 34556788899999988753 56799999999999999875421
Q ss_pred --CceeEEEEeCCCCEEEEEecC--------CeEEEEEC-CCCeeeEEEeCCCCCCCcCeEE
Q 001157 589 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 589 --~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
..+..+...++|+.+++.... +..+++.+ .+++.+-.+........+.+++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136778889999888886411 23355555 4677777777666555666654
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=2.7e-11 Score=135.08 Aligned_cols=279 Identities=9% Similarity=-0.023 Sum_probs=184.6
Q ss_pred EeecCCCeEEEEEe-CCC---cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe-
Q 001157 353 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 427 (1135)
Q Consensus 353 ~fspdg~~lla~gs-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~- 427 (1135)
...|++++++++.. ..+ .|.++|..+++.+.. +..-..+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577764444332 222 889999998876542 1111223 899999999999986
Q ss_pred ---------CCCeEEEEEcCCCCceeeeeEee--cC---CCCeeEEEEecCCCceEEEEEcC--CCcEEEEEcCCCeeEE
Q 001157 428 ---------SKHIVHLYTYNPTGELRQHLEID--AH---VGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 428 ---------~dg~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~ 491 (1135)
.++.|.+||..+.+.+.... +. .+ ......++|+|||+ +|+.+.. ++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876654321 11 00 12345899999999 5665543 57899999 9999887
Q ss_pred E-ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec-----CCCCe-EEEEEEcCCCCEEEEEeeCCC
Q 001157 492 T-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 492 ~-l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
. +.. ... +.+.+.+. ..+++.+.||.+.++|. +++...... ..... .....+.+++..++..+.
T Consensus 162 ~~i~~-~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSS-PTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCC-Cce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 642 222 33444443 46677888999999999 665553221 11111 233556777665554432
Q ss_pred CCceEEEEeCCCCc--eeEEeeccc---------CCceeEEEEeCCCCEEEEEec----------CCeEEEEECCCCeee
Q 001157 565 GESHLVEWNESEGA--IKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNML 623 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 623 (1135)
.+.+.+.|+..+. .+..+.... ......+.++|+++.++.+.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4579999987543 223322110 112344789999998888643 358999999999999
Q ss_pred EEEeCCCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheee
Q 001157 624 TTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~ 670 (1135)
.++.... ....++|+|||+ +++++. .++.|.+||..++ +..+.
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 9997543 468999999999 777776 4899999999988 44444
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=2.3e-12 Score=140.73 Aligned_cols=284 Identities=12% Similarity=0.119 Sum_probs=191.3
Q ss_pred EEeecCCCeEEEEEeC----CCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 352 MDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 352 ~~fspdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
....|++++++++-.. ++.|.+.|..+++.+.+ +..-..+ .+++||||+++.++.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P--~va~spDG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP--NPVVADDGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC--cEEECCCCCEEEEEc
Confidence 4557888876665544 68999999999887653 1112223 499999999888775
Q ss_pred ----------CCCeEEEEEcCCCCceeeeeEeec-----CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEEcCCCeeE
Q 001157 428 ----------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 428 ----------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~ 490 (1135)
.++.|.+||..+.+.+.... +.. .......++|+|||+ +++.+. .++.|.++|+.+++.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk--~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSS--EEEEEECSSSCEEEEEETTTTEEE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCC--EEEEEEcCCCCeEEEEECCCCcEE
Confidence 36789999999987665332 211 012456799999999 455444 3789999999999999
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCceEEec----CCCCeE-EEEEEc-CCCCEEEEEeeCC
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYD----APGNWC-TMMAYS-ADGTRLFSCGTSK 563 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~----~~~~~v-~~~~~s-~~~~~l~~~~~~~ 563 (1135)
.++.-.. .. . +.|.+. ..+++.+.||.+.+.++.. ++...... .....+ ....|. ++|++++...
T Consensus 174 ~tI~v~g--~~-~-~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--- 245 (386)
T 3sjl_D 174 RMLDVPD--CY-H-IFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 245 (386)
T ss_dssp EEEECCS--EE-E-EEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred EEEECCC--cc-e-eecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC---
Confidence 9885321 11 1 223332 5677888999999999876 33322111 111122 123553 6776655432
Q ss_pred CCCceEEEEeCCCCc--eeEEee---------cccCCceeEEEEeCCCCEEEEEec----------CCeEEEEECCCCee
Q 001157 564 EGESHLVEWNESEGA--IKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~--~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~ 622 (1135)
++.+++.|..++. ....+. +........+++++++++++.... .+.|.+.|+.+++.
T Consensus 246 --~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 246 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 5789999987654 333332 111112345778999999888642 25799999999999
Q ss_pred eEEEeCCCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheeeccC
Q 001157 623 LTTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~~ 673 (1135)
+..+.... .+..+++++|++ +|+++. .++.|.++|..++ +.++.+..
T Consensus 324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~ 372 (386)
T 3sjl_D 324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 372 (386)
T ss_dssp EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecC
Confidence 99987542 578999999997 666654 4899999999998 56665543
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=3e-12 Score=137.19 Aligned_cols=240 Identities=8% Similarity=-0.049 Sum_probs=167.5
Q ss_pred CeeEEEeecCCCeEEE-EEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 348 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla-~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
...+++++|+|+ +++ +.+.++.|.+|+..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999997 666 546788999999765442210 11233567899999999966666
Q ss_pred eCCCeEEEEEcCCCCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
. ++.|.+||..+.... .+. .....+.+++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765432 122 2335689999999998 7777777889999986655443322233346778888
Q ss_pred ccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
++++ .++++...++.|.+||................+.+++++++|..+++.. .++.|.+||........ ...
T Consensus 158 ~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DNSG--NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CTTC--CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEE-CCC
T ss_pred eCCC--CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCccee-ecc
Confidence 7654 7777777789999999876554433223336788999999996666553 36679999987654332 222
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCe
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 121267889999999988888889999999987654
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=7.5e-12 Score=136.68 Aligned_cols=288 Identities=11% Similarity=0.048 Sum_probs=189.5
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe---------CCCcEEEEEcCCccccccccceeecccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.++.+|..+.+.+.++....... +++||||++++++.+ .++.|.+||..+++.+.+-.+ ..+.
T Consensus 60 ~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v-----~~g~-- 131 (386)
T 3sjl_D 60 QQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL-----PDAP-- 131 (386)
T ss_dssp EEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-----TTCC--
T ss_pred EEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC-----CCcc--
Confidence 34555667788888888444444 999999997666542 367899999999886653110 0000
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
-.........++|+|||++|.++.. ++.|.++|+.+++.+... .+.+ . ...+ |.+.+ .+++.+.|
T Consensus 132 -----r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g----~-~~~~-P~g~~-~~~~~~~D 198 (386)
T 3sjl_D 132 -----RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD----C-YHIF-PTAPD-TFFMHCRD 198 (386)
T ss_dssp -----CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS----E-EEEE-EEETT-EEEEEETT
T ss_pred -----ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCC----c-ceee-cCCCc-eeEEECCC
Confidence 0001234667999999999998864 689999999998766533 2111 1 2233 44443 56677889
Q ss_pred CcEEEEEcCC-CeeEEEecCCC----CCeE-EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--Eec--C-------
Q 001157 477 KMIKVWDVVA-GRKQYTFEGHE----APVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYD--A------- 539 (1135)
Q Consensus 477 ~~i~iwd~~~-~~~~~~l~~h~----~~v~-~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~--~------- 539 (1135)
|.+.+.++.+ ++...+...+. .++. ...|.+ .+|.++ ..+.+|.|.+.|+.+..... .+. .
T Consensus 199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCEEEEECCCCCeEEEeecceeccccccccccceeEc-CCCcEE-EEeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 9999999876 66533221111 1221 123331 244444 46668999999987654322 111 0
Q ss_pred -CCCeEEEEEEcCCCCEEEEEeeC------CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEe-cCC
Q 001157 540 -PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1135)
Q Consensus 540 -~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg 610 (1135)
.......++++++++.++..... ++..+.|.+.|+.+++.+..+.... .+..+.+++|++ +|+++. .++
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTT
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCC
Confidence 01122347779999998876431 1123679999999999999887654 678899999996 677754 689
Q ss_pred eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
.|.++|..+++.+.++...++ .+.+.+++|
T Consensus 355 ~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 355 TLYIHDAESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred eEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence 999999999999999987655 366777776
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2.1e-12 Score=159.87 Aligned_cols=247 Identities=11% Similarity=0.037 Sum_probs=164.1
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCc--
Q 001157 406 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. . .+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~--~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--E--LKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--E--EEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--c--CCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344568899999999999988654 4699999999876432 1 12222467899999 8 5666665543
Q ss_pred ------------EEEEEcCCCe----eEEEecCCCCCeEEEEeccCCCccEEEEEEcCC-----eEEEEeCCCC--CceE
Q 001157 479 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 535 (1135)
Q Consensus 479 ------------i~iwd~~~~~----~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~--~~~~ 535 (1135)
|++|++.++. .+.....+...+..+.|+|++ ++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 8999998765 233333344468888997755 7887777544 8999999876 3134
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC-ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEE
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
.+..+...+... ++|+|+.|+..+........|++||+.++ .....+..+....+..++++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 444444444444 34899999887754334678999999875 23333334444357677777 5566777788888777
Q ss_pred EECC-CCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe----CCCcEEEEECCCc
Q 001157 615 WDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~~ 664 (1135)
|.+. +++....+..+. ...+..++++|++..++... ..++|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455555555322 23577888999887665332 2478999999877
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=1.2e-10 Score=126.73 Aligned_cols=279 Identities=9% Similarity=-0.015 Sum_probs=192.8
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
....+.++++.++|+ ++++...++.|.+||.. ++... +. +..+...+.++++.++|+..+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~------~~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE------FE------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE------EE------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE------EE------------CCCCCCcceeEEECCCCCEEE
Confidence 346899999999997 66666668899999987 44321 00 122345789999999999888
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeEEE
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~~l 503 (1135)
+...++.|..||.. ++. . ...+......+.++++.++|. ++++...++.|..+|.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 443 2 112333446789999999998 67777778899999987 65542 333345678889
Q ss_pred EeccCCCccEEEEEEcCCeEEEEeCCCCCceE-EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEE
Q 001157 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.+++ .+.++...++.|..||. +++... ........+..++++++|+..++.. ..+.|.+||. +++....
T Consensus 152 ~~d~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSDN--ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTTS--SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCCC--CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 887654 66666666889999998 333332 2223445789999999998766653 3567999998 5554432
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
........+.+++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 21112236788999999986666666789999998 44433 333332334678999999998666554 4 6766664
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=1.3e-10 Score=129.63 Aligned_cols=273 Identities=11% Similarity=-0.005 Sum_probs=180.2
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe---------CCCcEEEEEcCCccccccccceeecccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.+..+|..+++.+.++.....- .++|||||+++.++.. .++.|.+||..+.+.+....+ ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~-----~~---- 117 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-----PD---- 117 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEEC-----CC----
Confidence 4556666677777777754444 9999999996555542 367899999988766542100 00
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d 476 (1135)
... . .+......++|+|||++|+++.. ++.|.++| .+++.+... +. .. .++.+.|++.. .+++.+.|
T Consensus 118 -~~~-~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~-~~---~~~~~~~~~~~-~~~~~~~d 186 (373)
T 2mad_H 118 -APR-F-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LS-SP---TCYHIHPGAPS-TFYLLCAQ 186 (373)
T ss_pred -ccc-c-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cC-CC---ceEEEEeCCCc-eEEEEcCC
Confidence 000 0 01133558999999999999874 57899999 888755420 22 11 23566788766 56677789
Q ss_pred CcEEEEEcCCCeeEEEec-----CCCCCe-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecC---------
Q 001157 477 KMIKVWDVVAGRKQYTFE-----GHEAPV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDA--------- 539 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~l~-----~h~~~v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~--------- 539 (1135)
+.+.++|. +++.+.... ....++ ....+.+.+ ..++..+..+.+.+.|+....... .+..
T Consensus 187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC--CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 99999999 887764322 111121 223344443 333333467899999987543221 1111
Q ss_pred -CCCeEEEEEEcCCCCEEEEEeeCC------CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEEEe-cCC
Q 001157 540 -PGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1135)
Q Consensus 540 -~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg 610 (1135)
.......++++|+++.++.....+ +..+.|.++|..+++.+..+.... ....+.|+|||+ .++++. .++
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCC
Confidence 012234578999999888765321 134679999999999999886543 578899999999 777776 589
Q ss_pred eEEEEECCCCeeeEEE
Q 001157 611 QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~ 626 (1135)
.|.+||..+++.+..+
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999998874
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.5e-11 Score=152.28 Aligned_cols=244 Identities=8% Similarity=-0.037 Sum_probs=159.4
Q ss_pred CeeEEEeecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l 423 (1135)
.+..++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|+|| +.|
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CEE
Confidence 6889999999996555544434 599999999876431 011222467899999 999
Q ss_pred EEEeCCCe--------------EEEEEcCCCCcee-eeeEeecCCCCeeEEEEecCCCceEEEEEcC-----CCcEEEEE
Q 001157 424 GVAFSKHI--------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVWD 483 (1135)
Q Consensus 424 a~~~~dg~--------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~iwd 483 (1135)
+.++.++. |++|++.++.... .......+...+..+.|||||+ +|+..+. ...|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEEEE
Confidence 99877654 8899998765321 1112223334588999999999 5555543 34899999
Q ss_pred cCCC--eeEEEecCCCCCeEEEEeccCCCccEEEEEEc----CCeEEEEeCCCC--CceEEecCCCCeEEEEEEcCCCCE
Q 001157 484 VVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 484 ~~~~--~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~----dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
+.++ +....+..+...+....+ +++ +.|+..+. ++.|.+||+.+. .....+..+...+..++++ ++..
T Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~-~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~l 376 (741)
T 1yr2_A 301 VTNGKIGPVTALIPDLKAQWDFVD-GVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRL 376 (741)
T ss_dssp EETTEECCCEEEECSSSSCEEEEE-EET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEE
T ss_pred CCCCCCcccEEecCCCCceEEEEe-ccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEE
Confidence 9887 314556556555555533 544 66666665 345999998875 2233444445567777877 4445
Q ss_pred EEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE----ecCCeEEEEECCCCe
Q 001157 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA----GDEFQIKFWDMDNMN 621 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 621 (1135)
+++... ++...|+++++ ++.....+.......+..+.++|+++.++.. ...++|++||+.+++
T Consensus 377 v~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 377 FASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555543 23344555665 4556666665434468889999998766632 245889999999887
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=2.9e-10 Score=123.72 Aligned_cols=278 Identities=8% Similarity=0.038 Sum_probs=188.9
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
....+.++++.++|+..++...++.|.+|+.. +......+.. + ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECC
Confidence 45678999999999977777677888888642 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEE-EeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE-eecCccCce
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 927 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i 927 (1135)
+|++.++.. ++.|..||.. ++... ........+.++++++ +++++++...++.|..||.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999877766 6889999988 55532 2222346789999999 78888777668899999987 65442 233345678
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCc
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~ 1006 (1135)
.++++.++|+++++...++.|..+|. +++... +.. .... ..+..++++++|...++. ..+.|.+||.++..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~-~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPL-PTNA---AAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EEC-SSTT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeC-CCCC---CCcceEEECCCCCEEEEccCCCEEEEEcCCCcE
Confidence 99999999998887777888999998 444221 111 1111 457899999999877665 35679999984433
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l 1086 (1135)
...... .+...+.+++++++|++.++...++.|..|+. +++.. .+. .+ .....+.+++.++ ++++.
T Consensus 221 ~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~-----~~~~~~~~i~~~~-~g~l~ 286 (300)
T 2qc5_A 221 SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQ-----TENAEPHGITFGK-DGSVW 286 (300)
T ss_dssp EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CC-----STTCCCCCEEECT-TSCEE
T ss_pred EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CC-----ccCCccceeEeCC-CCCEE
Confidence 222111 22567889999999997776666789999998 45433 221 11 1234567888888 66766
Q ss_pred EEEecCCcEEEEecC
Q 001157 1087 ALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1087 ~s~~~Dg~i~lW~~~ 1101 (1135)
++.. . .|..++..
T Consensus 287 v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 287 FALK-C-KIGKLNLN 299 (300)
T ss_dssp EECS-S-EEEEEEEC
T ss_pred EEcc-C-ceEEeCCC
Confidence 6554 4 77777653
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=4.1e-11 Score=133.63 Aligned_cols=279 Identities=10% Similarity=0.094 Sum_probs=189.7
Q ss_pred cCCCeEEEEEeCC----CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe----
Q 001157 356 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 427 (1135)
Q Consensus 356 pdg~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~---- 427 (1135)
|++++++++...+ +.|.+.|..+++.+.+ +.--..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666566555544 7999999999887754 1111233 899999999988886
Q ss_pred ------CCCeEEEEEcCCCCceeeeeEee--c---CCCCeeEEEEecCCCceEEEEEc--CCCcEEEEEcCCCeeEEEec
Q 001157 428 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~ 494 (1135)
.++.|.++|..+.+.+.... +. . .......++|+|||+ +++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987765332 21 0 113456789999999 555554 36899999999999998876
Q ss_pred CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE----ecCCCCe-EEEEEEcCCCCEEEEEeeCCCCCceE
Q 001157 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 495 ~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
--. . ....|.+. ..+++.+.||.+.+.+..+++.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334433 5677788899988888854443321 1111111 123567899988877653 5679
Q ss_pred EEEeCCCCcee--EEeecc---------cCCceeEEEEeCCCCEEEEEec----------CCeEEEEECCCCeeeEEEeC
Q 001157 570 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 628 (1135)
.+.|...+... ..+... .......++++|++++++.... .+.|.+.|..+.+.+.++..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998654421 111110 0001223789999988877642 35799999999999999875
Q ss_pred CCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheeec
Q 001157 629 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 629 ~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~ 671 (1135)
.. ....++|+|||+ ++++.. .++.|.++|..++ +..+.+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 43 368999999999 888887 5899999999998 555554
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=4.8e-10 Score=125.06 Aligned_cols=295 Identities=7% Similarity=-0.065 Sum_probs=192.2
Q ss_pred CCccEEEEEEc-C----CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeC------CCCCceEEEEeCCCC
Q 001157 509 ESIQFIFSTAI-D----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEG 577 (1135)
Q Consensus 509 ~~~~~l~s~s~-d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~ 577 (1135)
.++..++.... + +.|.++|..+.+.+..+.....+ .++++|||++++++... ++.++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 34455554443 3 79999999999888877765555 89999999998877521 112567999999999
Q ss_pred ceeEEeecc--c----CCceeEEEEeCCCCEEEEEec--CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC-CEEE
Q 001157 578 AIKRTYSGF--R----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SLLA 648 (1135)
Q Consensus 578 ~~~~~~~~~--~----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 648 (1135)
+.+..+... . ......+.|+|||++++.+.. ++.|.+.|+.+++.+..+...+ +....|++ +.++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEEE
Confidence 998887532 0 113455889999999999873 6899999999999999887532 13344543 5666
Q ss_pred EEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccC
Q 001157 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+.+.||.+.+.+..++ +......
T Consensus 234 ~~~~dG~~~~V~~~~~-~v~~~~~-------------------------------------------------------- 256 (426)
T 3c75_H 234 MNCRDGSLARVDFADG-ETKVTNT-------------------------------------------------------- 256 (426)
T ss_dssp EEETTSSEEEEECCTT-CCEEEEC--------------------------------------------------------
T ss_pred EEcCCCCEEEEECCCC-cEEEEee--------------------------------------------------------
Confidence 7778888888887444 2221110
Q ss_pred CCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCC
Q 001157 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 808 (1135)
.++++.. ......+.+++++..++.....+.+.+.|+.......
T Consensus 257 -------------------~~~~v~~-----------------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 257 -------------------EVFHTED-----------------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp -------------------CCCSCTT-----------------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred -------------------eeeccCC-----------------CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 0001100 0000123567777766666667778887764321100
Q ss_pred CCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-----------CCeEEEEeCCCceEEEEe
Q 001157 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMF 877 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s-----------dg~i~iwd~~~~~~~~~~ 877 (1135)
+.-|.......+.... . ......++++||++++.+.. +++|.++|+.+++.+.++
T Consensus 301 ---------~~~~~~~~~~~i~~g~----~-p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I 366 (426)
T 3c75_H 301 ---------RAPIEALTEAERADDW----R-PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI 366 (426)
T ss_dssp ---------CCCEESSCTTTGGGTE----E-ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred ---------eeeeeecccccccccc----c-cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence 0001111000000000 0 11222478999999877763 246999999999999988
Q ss_pred eCCCCCeeEEEEeCCCCc-EEEEEe-CCccEEEEEcccceEeEee
Q 001157 878 MSPPPAATFLAFHPQDNN-IIAIGM-EDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 878 ~~~~~~v~~l~~sp~~~~-~lasg~-~dg~v~iwd~~~~~~~~~l 920 (1135)
... .....++|+| |++ ++++.. .++.|.++|+.+++.+.++
T Consensus 367 ~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 367 ELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 632 2578999999 777 777777 5899999999999999887
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=1.9e-10 Score=126.18 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=163.5
Q ss_pred CCCeeEEEeecCCCeEEEE-------EeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcC
Q 001157 346 GSNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~-------gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
-....+++|+++|+ ++++ +..++.|.+||..+++.... .. ....++...+.++++++
T Consensus 17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~---------~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK---------PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC---------CEETTEECCEEEEEECS
T ss_pred CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee---------cccCCCCCCCceEEEec
Confidence 34678999999997 6666 56688999999887764321 00 00122456789999999
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-ec-CCCCeeEEEEecCCCceEEEEEcCC---------------CcEE
Q 001157 419 D-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIK 480 (1135)
Q Consensus 419 d-g~~la~~~~dg~i~iwd~~~~~~~~~~~~~-~~-h~~~v~~l~~s~d~~~~~l~s~~~d---------------~~i~ 480 (1135)
+ |+++++. ..+.|.+||.+ ++........ .+ ....+.+++++++|. ++++...+ +.|.
T Consensus 81 ~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 81 DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEE
Confidence 9 7655554 44479999988 5532210111 11 124588999999998 56665544 5677
Q ss_pred EEEcCCCeeEEEecCCCCCeEEEEec----cCCCccEE-EEEEcCCeEEEEeCC-CCC-----ceEEecCCC-CeEEEEE
Q 001157 481 VWDVVAGRKQYTFEGHEAPVYSVCPH----HKESIQFI-FSTAIDGKIKAWLYD-YLG-----SRVDYDAPG-NWCTMMA 548 (1135)
Q Consensus 481 iwd~~~~~~~~~l~~h~~~v~~l~~~----~~~~~~~l-~s~s~dg~i~~wd~~-~~~-----~~~~~~~~~-~~v~~~~ 548 (1135)
.||.. ++..... .+......++++ ++ ++.+ ++...++.|.+||++ .+. ....+..+. ..+..++
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~d--g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGR--PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSC--EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCC--CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 77765 5543332 334456788887 54 4555 444568999999976 332 112233333 5688999
Q ss_pred EcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE-ecCCeEEEEECCC
Q 001157 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDN 619 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1135)
++++|+..++.. .++.|.+||..+++.+..+..+.. .+.+++|+++++.|+.+ ..++.|..|++..
T Consensus 233 ~d~~G~l~v~~~----~~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEc----CCCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998877764 256799999987887777766544 78899999999966554 4668899999864
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=1.8e-10 Score=126.40 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=165.2
Q ss_pred CCCeeEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCceeeee-EeecCCCCeeEEEEecC-CCceEEEEEcCCCc
Q 001157 408 AISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKM 478 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~-------~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~ 478 (1135)
-....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++.. ...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 345789999999998888 5678899999988776432100 00124567899999999 65 444444 447
Q ss_pred EEEEEcCCCeeEEE-ecC----CCCCeEEEEeccCCCccEEEEEEcC---------------CeEEEEeCCCCCceEEec
Q 001157 479 IKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 i~iwd~~~~~~~~~-l~~----h~~~v~~l~~~~~~~~~~l~s~s~d---------------g~i~~wd~~~~~~~~~~~ 538 (1135)
|.+||.. ++.... ... ....+.++++++++ .++++...+ +.|..||.. ++. ..+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-IQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-EEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CCE-EEec
Confidence 9999988 765433 221 12457889987654 677766655 567777765 332 2222
Q ss_pred CCCCeEEEEEEc----CCCCEEEEEeeCCCCCceEEEEeCC-CCce-----eEEeecccCCceeEEEEeCCCCEEEEEec
Q 001157 539 APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGAI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 539 ~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1135)
........++++ |+++.++.+.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 223356789999 99987766542 36789999976 4542 22233322025778999999998888778
Q ss_pred CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEE-EeCCCcEEEEECCC
Q 001157 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKILANSD 663 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~v~iw~~~~ 663 (1135)
++.|.+||..+++.+..+..+. ..+.+++|+++|+.|++ ...++.|..|++..
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777777776543 36789999999995554 44568899998764
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=2.6e-10 Score=129.16 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=165.9
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCc--cEEEEEcccceEe
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 917 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 917 (1135)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|++++.++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999999766666 689999999988776665542 3334 99999 788888888766 7999998766543
Q ss_pred Eee----cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeec--CCCCCCCCCCce-eEEECCCCcEEE
Q 001157 918 TKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA--PAGRQSPLVGET-KVQFHNDQTHLL 990 (1135)
Q Consensus 918 ~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~v~-~~~fspdg~~l~ 990 (1135)
..+ ..+...+.+++++|++..|..+..++.|+.||..++... .+.. ..+... .... .++|+|++..|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEEE
Confidence 333 224566789999995555555777889999999876521 1111 111110 1123 999999655555
Q ss_pred EE--ECCcEEEEeccCCcccccCCCC---C---------CCCCeEEEEEccCCCEEEEEe-cCCcEEEEecCCCceeecc
Q 001157 991 VV--HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 991 ~~--~d~~i~vwd~~~~~~~~~~~~~---~---------h~~~i~~~~~s~dg~~l~s~~-~dg~V~vwd~~~~~~~~~~ 1055 (1135)
++ .++.|..|+..+.. ..+.... + .-.....++++++|+++++-. .+++|+.|++.+|......
T Consensus 283 v~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 54 46789999985542 1111110 0 023478899999999777777 7899999998887643322
Q ss_pred CCC---cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1056 GPS---AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1056 ~~~---~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
... .+.........-..+..+++++ +++++++-..+++|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 110 0000000011125688999999 6888888888889988776
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=7e-10 Score=125.57 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=164.3
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999997 777777789999999987764321 111 22233 9999999999998
Q ss_pred eCCC--eEEEEEcCCCCceeeeeEeec-CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE----ecCCCCC
Q 001157 427 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 499 (1135)
Q Consensus 427 ~~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----l~~h~~~ 499 (1135)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999877654332211222 456688999999555 344467788999999887764322 2222222
Q ss_pred e--EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC---------------CCeEEEEEEcCCCCEEEEEeeC
Q 001157 500 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---------------GNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 500 v--~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 562 (1135)
- ..++|+|.+ +.++++...++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998853 367777778899999987643 2222222 13578999999999555542
Q ss_pred CCCCceEEEEeCCCCceeEEeeccc--------------CCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 563 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
.+.+.|+.|++.++.. ..+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0367899999877764 3443330 124778999999877777778888888765
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=7.3e-11 Score=129.63 Aligned_cols=175 Identities=11% Similarity=0.066 Sum_probs=133.6
Q ss_pred CCCeeEEEeecCCCEEEEEeCCeEEEEeCCCce-----------EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
..++..+++++...++++|+...+.+|++.+.. ...... +.. |+.++| ++.+|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 346889999999999999997788889876433 112222 455 999999 56788888 8899999
Q ss_pred EEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcE
Q 001157 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1135)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1135)
||+.+......+..|...+.++.+.+.. +++++.||.|.+||+.++.... +. ..|++++|||+| .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-L 175 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-E
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-e
Confidence 9998776666677788889888877653 8889999999999999766321 11 478999999999 4
Q ss_pred EEEEECCcEEEEeccCCc---ccccC------CCCCCCCCeEEEEEccCCCEEEEE
Q 001157 989 LLVVHESQISVYDSKLEC---SRSWS------PKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 989 l~~~~d~~i~vwd~~~~~---~~~~~------~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.+...||.+++|+..+.. ...+. ...+|...|.+|.|.+++.+|++=
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 444689999999985544 22331 112467899999999999998873
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=6.4e-10 Score=120.57 Aligned_cols=228 Identities=9% Similarity=0.083 Sum_probs=155.1
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
-..+..|+|++..++++...++.|..||..+++... ......+.+++++|+|+++++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~~- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVATI- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEEE-
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEEE-
Confidence 456899999776788888889999999998765421 1134579999999999955543
Q ss_pred CCCeEEEEEcCCCCceeeeeEeec--CCCCeeEEEEecCCCceEEEEE-cC--------CCcEEEEEcCC-CeeEEEecC
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVA-GRKQYTFEG 495 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~-~~~~~~l~~ 495 (1135)
++.|.+||.++++.. ....... ....+++++++|+|+ ++++. .. ...-.||.+.. ++.. .+..
T Consensus 72 -~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp -TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred -CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 567999999876532 2112111 123578999999998 44443 22 13345555543 4333 2333
Q ss_pred CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC--CCCce-----EEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 496 h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
+....+.++|+|++. .++++.+.++.|.+|+++ ++... ..+.........++++++|++.++.. +.+.
T Consensus 147 ~~~~pngi~~spdg~-~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~----~~~~ 221 (297)
T 3g4e_A 147 QVDISNGLDWSLDHK-IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY----NGGR 221 (297)
T ss_dssp EESBEEEEEECTTSC-EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----TTTE
T ss_pred ccccccceEEcCCCC-EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----CCCE
Confidence 444568899988652 244566678999999874 33221 12222335788999999998776654 3567
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEec
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 608 (1135)
|..||..+++.+..+..... .+.+++|. |+++.|+.++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 99999999999988887654 78999998 88887776653
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=3.2e-10 Score=138.76 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=164.0
Q ss_pred CCeeEEEeecCCCeEEEEEeCC----CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 422 (1135)
..+..++|||||++++.+.+.. ..|++||+.+|+.+.. . + +......++|+ ||+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GNEG 187 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TTTE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CCCE
Confidence 4688899999999655554433 4799999999875431 0 1 11113578999 9999
Q ss_pred EEEEeCCC-------------eEEEEEcCCCCcee-eeeEeec-CCCCeeEEEEecCCCceEEEEEc---CCCcEEEEEc
Q 001157 423 LGVAFSKH-------------IVHLYTYNPTGELR-QHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDV 484 (1135)
Q Consensus 423 la~~~~dg-------------~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~---~d~~i~iwd~ 484 (1135)
|+.++.+. .|++|++.++.... ....... |...+..+.|+|||+.+ +++.+ .+..|++||+
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVKDL 266 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEEET
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEEEC
Confidence 99998774 39999998765321 1112223 44567889999999952 33333 2358999999
Q ss_pred CCCe-eEEEecCCCCCeEEEEeccCCCccEEEEEEcC---CeEEEEeCCCCCc--eEEecCCCCeEEEEEEcCCCCEEEE
Q 001157 485 VAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 485 ~~~~-~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1135)
.++. ....+..+....... ++++++ .+++....+ +.|..+|+.++.. ...+..+...+. .|+++++.|+.
T Consensus 267 ~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 267 SQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 8764 445666666666554 444442 455555443 6799999987654 234444554444 89999999887
Q ss_pred EeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC----CeEEEEECCCCeee
Q 001157 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1135)
...+ ++...|++||+..+ ....+.......+..+.++++++.++....+ ++++.||+.+++..
T Consensus 343 ~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 343 EYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 6642 23457999998744 4455543333356677788888777665444 88999999887643
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=2.1e-10 Score=127.19 Aligned_cols=272 Identities=10% Similarity=0.010 Sum_probs=174.1
Q ss_pred CCeeEEEeecCCCeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+.+++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343677776644322 111111 01234667899999999998766
Q ss_pred EEeC-----CCeEEEEEcCCCCceeeeeEee----cCCCCeeEEEEecCCCceEEEEEc---CCCcEEEEEcCCCeeEEE
Q 001157 425 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 ~~~~-----dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 492 (1135)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988754422 221 12345689999987653 455555 678999999999988777
Q ss_pred ecCCCCCeE-EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEE
Q 001157 493 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 l~~h~~~v~-~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++++|+|+.|+.+.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 766532211 022222 336666777788877663 13578999999999888754 2335665
Q ss_pred EeCC---CCc-----eeE--EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEe
Q 001157 572 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1135)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ....+.+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1112222 3456899999998888888999999999666644333321 22356789999
Q ss_pred cCCCEEEEEeCCCc
Q 001157 642 KEGSLLAVTTSDNG 655 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~ 655 (1135)
+++.++++.+..+.
T Consensus 300 ~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 300 SDGYLYFDCNQLHH 313 (343)
T ss_dssp TTSCEEEEECCGGG
T ss_pred CCCcEEEEeCcccc
Confidence 98887777655433
No 219
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.28 E-value=9.6e-06 Score=96.27 Aligned_cols=532 Identities=11% Similarity=-0.015 Sum_probs=288.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeE
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~ 501 (1135)
+|+.+ ....|+..++++..... ...+. .-..+..++|++++.. ++.+-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 56678999998754321 11222 2346789999997764 455666788999999765443333332334567
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeE
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.+++.+.. +++.++-...+.|.+.+++...........-.....+++.|...+|+.... ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 78886553 356677677889999998765444444344456789999997667766532 125678888876443322
Q ss_pred EeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 582 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
... .. .....++++++++.|+.+. ..+.|...++..... ..+... ......+++.. +.+.++-...+.|...|
T Consensus 161 l~~-~~-~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP-NV-GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC-SC-SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC-CC-CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 232 22 2577899999888777765 667899999876544 333322 22346777765 44444444578888888
Q ss_pred CCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCcccc
Q 001157 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
..++. ....+........ .+.+. .+... + ..+.+...++
T Consensus 235 k~tg~-~~~~l~~~~~~p~------------~i~v~------------~~~~q---------~---~~n~C~~~ng---- 273 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVM------------DILVF------------HSSRQ---------S---GWNECASSNG---- 273 (628)
T ss_dssp TTTCC-SCEEEECSCCSCC------------EEEEE------------CGGGS---------C---CCCTTTTTGG----
T ss_pred CCCCC-ceEEEecCCCCcc------------eeeee------------eeccc---------c---cceEeccCCC----
Confidence 77773 2333322111000 00000 00000 0 0000000000
Q ss_pred ccccccccccccCcccCCCceeEEEcCC--CCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccc
Q 001157 741 AEDVDKIKSWRIPDISDPSQIKALRLPD--SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1135)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 818 (1135)
.-..+.+-.... . ....-+. .......+|.. + ...|+.+ ....|+-..+...
T Consensus 274 --~C~~~C~~~~~~---~---~~C~C~~g~~l~~d~~~C~~--~-~~~Ll~s-~~~~i~~i~l~~~-------------- 327 (628)
T 4a0p_A 274 --HCSHLCLAVPVG---G---FVCGCPAHYSLNADNRTCSA--P-TTFLLFS-QKSAINRMVIDEQ-------------- 327 (628)
T ss_dssp --GCSSEEEEETTT---E---EEEECSTTCEECTTSSCEEC--C-SSEEEEE-ETTEEEEECCCTT--------------
T ss_pred --CcchhhhcCCCC---C---eeEEcCCCcEecccCCcCcc--c-cceeeee-ccceEEEEecccc--------------
Confidence 000000000000 0 0000000 00001111111 1 1222222 2233433322110
Q ss_pred eeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeC------CCCCeeEEEEe
Q 001157 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFH 890 (1135)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~s 890 (1135)
..........+ -..+.+++|.+.+..|..+. .+.|..+++........+.. ....+..+++.
T Consensus 328 ------~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 328 ------QSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp ------CCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred ------cCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 00000111112 35578999999888887776 57899998875433233322 23468899999
Q ss_pred CCCCcEEEEEeCCccEEEEEcccceEeEee-cCccCceEEEEEcC-CCCeEEEEcCCC--cEEEEeCCCcccccceeeec
Q 001157 891 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRFIQA 966 (1135)
Q Consensus 891 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~-d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~~ 966 (1135)
..++++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.|-.... .|...+++..... .....
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~--~l~~~ 474 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE--VLFFS 474 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE--EEECS
T ss_pred ccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE--EEEec
Confidence 8445555566677899999986 4444333 34456789999999 455444433222 5666666543321 11111
Q ss_pred CCCCCCCCCCceeEEECCCCcEEEEEE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001157 967 PAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1135)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vw 1044 (1135)
. ......+++.+++..|..+. .+.|..+++.+.....+... ......+|++.. +.+.++=...+.|...
T Consensus 475 ~------l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~ 545 (628)
T 4a0p_A 475 G------LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKI 545 (628)
T ss_dssp S------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred c------CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence 1 13568999999988888865 47899999866555444321 133456777644 5555555567788888
Q ss_pred ecCCCceeecc
Q 001157 1045 DAETLRFRCRI 1055 (1135)
Q Consensus 1045 d~~~~~~~~~~ 1055 (1135)
|-.+|+....+
T Consensus 546 ~k~~G~~~~~i 556 (628)
T 4a0p_A 546 DMTGREGRTKV 556 (628)
T ss_dssp ETTSSSCCEEE
T ss_pred ECcCCCCcEEE
Confidence 88887765444
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=2.4e-09 Score=116.04 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=155.0
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 410 ~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
-.-+..|+|++. ++++...++.|..||..++... .+ .....+.+++++++|+ ++++. +..|.+||..+++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWKEQS 84 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETTTTE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECCCCc
Confidence 456889999655 5555566889999999886532 22 2456799999999998 45543 5689999998887
Q ss_pred eEEEecC----CCCCeEEEEeccCCCccEEEEEEcC---------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCE
Q 001157 489 KQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 489 ~~~~l~~----h~~~v~~l~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1135)
....... ....++.+++++++ .++++...+ ..-.+|.++.......+.........++|+|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 5432221 12347788887754 666654322 23455555443333333333345688999999998
Q ss_pred EEEEeeCCCCCceEEEEeC--CCCcee--E---EeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 556 LFSCGTSKEGESHLVEWNE--SEGAIK--R---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~--~~~~~~--~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
++.+.. ..+.|.+|++ .++... + .+.... .....++++++|+..++....+.|.+||..+++.+..+..
T Consensus 163 lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEE-QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGG-CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCC-CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 876643 3567999986 456532 1 222222 2577899999998888777788999999999999988876
Q ss_pred CCCCCCcCeEEEe-cCCCEEEEEeCC
Q 001157 629 DGGLPASPRLRFN-KEGSLLAVTTSD 653 (1135)
Q Consensus 629 ~~~~~~v~~~~~s-~~~~~l~~~~~d 653 (1135)
+. ..+.+++|. |+++.|++++..
T Consensus 239 p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 239 PV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CC--CCceEEEEeCCCCCEEEEEcCC
Confidence 53 368999998 888877776653
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=1.8e-10 Score=127.75 Aligned_cols=270 Identities=9% Similarity=0.011 Sum_probs=174.0
Q ss_pred CceEEEEEeCCcceeeeecc--cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 773 SKVVRLIYTNSGLSLLALAS--NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 773 ~~i~~~~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+..++++++|+.+++... ++.++||.+.. ++.. -|- +.. . ....| -..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~---~--~~~~~-~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS---G--NAIIT-FDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC---S--SCCCC-CSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc---c--Ccccc-eeEeeEEEEcC
Confidence 46789999999998777532 34367776641 1111 000 000 0 01114 56789999999
Q ss_pred CCCEEEEEe------CCeEEEEeCCCceEEEEeeCC------CCCeeEEEEeCCCCcEEEEEe---CCccEEEEEcccce
Q 001157 851 NDSYVMSAS------GGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGM---EDSSVQIYNVRVDE 915 (1135)
Q Consensus 851 dg~~la~~s------dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~~lasg~---~dg~v~iwd~~~~~ 915 (1135)
+|++.++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998666543 378999999999987776532 234689999984455555555 67899999999998
Q ss_pred EeEeecCccCceE-EEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-
Q 001157 916 VKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH- 993 (1135)
Q Consensus 916 ~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~- 993 (1135)
....+.+|..... ...++++|..+.+.+.|+.++.|.. .+..++|+|||+.|+++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 8777766533211 1345567877777888887766531 246899999999888864
Q ss_pred C-CcEEEEecc---CCcc------cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc
Q 001157 994 E-SQISVYDSK---LECS------RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1135)
Q Consensus 994 d-~~i~vwd~~---~~~~------~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~ 1063 (1135)
. ..+..++.. ...+ ..+. ..++......++++++|.++++...++.|.+||..+|+...... .
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~-- 287 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----D-- 287 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----C--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----C--
Confidence 3 344444431 1000 0000 01123356679999999999998889999999996675432221 0
Q ss_pred cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEE
Q 001157 1064 YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1064 ~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~ 1096 (1135)
.+...+..+++.+ +++++++.+..+.+-
T Consensus 288 ----~~~~~p~~va~~~-~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 288 ----EKLSWTDSFNFGS-DGYLYFDCNQLHHSA 315 (343)
T ss_dssp ----GGGSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred ----CceecCCeeEECC-CCcEEEEeCcccccc
Confidence 1135688999998 677877776555443
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=3.1e-09 Score=128.67 Aligned_cols=383 Identities=11% Similarity=0.062 Sum_probs=216.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCC----------e-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~----------v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.++.++.++.|+.+|..+|+.+.++...... + ..+++ . +..++.++.|+.|..+|.++++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~--~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--W--KGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--E--CCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5777778899999999999999887643221 0 11122 1 257888999999999999999988766
Q ss_pred cCC-C-CeEEEEEEcC---CCCEEEEEeeCC--CCCceEEEEeCCCCceeEEeecccC----------------------
Q 001157 538 DAP-G-NWCTMMAYSA---DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 538 ~~~-~-~~v~~~~~s~---~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
... . .....+..+| ++ .++.+.... ..++.|+.||..+|+.+..+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 1 1101111112 44 444443211 1367899999999999887753110
Q ss_pred --------CceeEEEEeCCCCEEEEEecCCe-------------------EEEEECCCCeeeEEEeCCCCC-------CC
Q 001157 589 --------RSLGVVQFDTTRNRFLAAGDEFQ-------------------IKFWDMDNMNMLTTVDADGGL-------PA 634 (1135)
Q Consensus 589 --------~~v~~~~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1135)
.....++++|+++.++.+..++. |..||..+|+.+-.++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788999999999887763 999999999999888753221 01
Q ss_pred cCeEEEecCCC---EEEEEeCCCcEEEEECCCcchheeeccCcc-cccCCCCCCCCcCCCCccccCCCCCccccccCCCC
Q 001157 635 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA-MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 635 v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1135)
+.......+|+ .++.++.+|.++++|..+| +++....... ..... +
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~------------~----------------- 356 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKG------------M----------------- 356 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEE------------E-----------------
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEeccccccccccccc------------c-----------------
Confidence 11112223565 7888999999999999999 4433221110 00000 0
Q ss_pred CCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeee
Q 001157 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 790 (1135)
+ . ..+..+... . ..|.... . ...+..|.......-..++|+|+...+++.
T Consensus 357 ~-------------~--------~~~~pi~~~--~--~~~~~~~----~-~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~ 406 (689)
T 1yiq_A 357 D-------------M--------KTGRPILDE--E--NAAYWKN----G-KRNLVTPAFWGAHDWQPMSYNPDTGLVYIP 406 (689)
T ss_dssp E-------------T--------TTTEEEECH--H--HHCTTTS----S-SCEEESSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred C-------------c--------cCCCcccch--h--hccccCC----C-CeeEeCCCcccccCCCcceECCCCCEEEEe
Confidence 0 0 000000000 0 0000000 0 011223332122233458999998888887
Q ss_pred cccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecC---CCEEEEEe-CCeEEEE
Q 001157 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS-GGKVSLF 866 (1135)
Q Consensus 791 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~d---g~~la~~s-dg~i~iw 866 (1135)
..+....++...... .|....+.. . .+. . +...|. +..+.... +|.|..|
T Consensus 407 ~~~~~~~~~~~~~~~--------------~~~~~~~~~---------~-~g~-~-~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 407 AHIMSAYYEHIPEAP--------------KRNPFKSMY---------Q-LGL-R-TGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp EEECCEEEECCSSCC--------------CCCSCTTSC---------C-CSS-E-ECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred ccccceeeeeccccc--------------ccccccccc---------c-cCc-c-ccccCcccccCCCCCCCcceeEEEE
Confidence 777555444221100 011000000 0 000 0 000010 00000111 4789999
Q ss_pred eCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc-eEEEEEcCCCC-eEEEEcC
Q 001157 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLN-ALVSSGA 944 (1135)
Q Consensus 867 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~-~l~s~~~ 944 (1135)
|+.+++.+..+..+.. +..-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|+.||+ ++++.+.
T Consensus 461 D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 9999999988875543 33335555 5678889999999999999999999988754332 23466778886 4454433
No 223
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.23 E-value=3.6e-06 Score=99.86 Aligned_cols=524 Identities=10% Similarity=0.004 Sum_probs=269.7
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee-EEEecCCCCCeEEEEec
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~h~~~v~~l~~~ 506 (1135)
....|+..++....... . .+...-..+..++|++.+.. ++.+-...+.|..+++..... ...+...-.....+++.
T Consensus 16 ~~~~I~~i~~~~~~~~~-~-~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 16 NRRDLRLVDATNGKENA-T-IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp CSSBEEEECCC-----------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred ccccEEEEeCCCCcceE-E-EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 45567777777542111 0 11223345789999997774 444555678899999765432 22333333568889987
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
+.+ +.+.++-...+.|.+.+++.................+++.|.+.+|+.... ...+.|...++. |.....+...
T Consensus 93 ~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~d-G~~~~~l~~~ 168 (619)
T 3s94_A 93 WLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMD-GSSRFIIINS 168 (619)
T ss_dssp TTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETT-SCSCEEEECS
T ss_pred ecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECC-CCceEEEEeC
Confidence 753 256677777899999998865544444344456778999998777765532 124567777765 3333333222
Q ss_pred cCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 001157 587 RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.-.....++++++++.|+.+. ..+.|...++............ ......+++..+ .+..+-...+.|...|..++.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 222578899999877777764 5678999998765544333311 223467887655 444444457789898887773
Q ss_pred hheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc-cC--CCcc-cccCccccc
Q 001157 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG-TI--DGSR-LVDVKPRVA 741 (1135)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~~ 741 (1135)
. ...+........ .+. .+.+...... ...+... ++ ..+. .+......+
T Consensus 246 ~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~~---~n~C~~~ng~Cs~lCl~~~~~~~~~C 297 (619)
T 3s94_A 246 G-LREIHSDIFSPM------------DIH------------AFSQQRQPNA---TNPCGIDNGGCSHLCLMSPVKPFYQC 297 (619)
T ss_dssp C-CEECCSCCCCCS------------EEE------------ECCGGGSCCC---CCTTTTTGGGCSSEEEECSSTTSEEE
T ss_pred c-cEEEecCCCCCc------------EEE------------EEccccCCCc---cccccCCCCcccceEECCCCCCCceE
Confidence 2 222221110000 000 0000000000 0000000 00 0000 000000000
Q ss_pred cc-cccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCccccccccee
Q 001157 742 ED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1135)
Q Consensus 742 ~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.. .|.. +. ....+|.. ....+|+. +..+.|+..++.....
T Consensus 298 ~C~~g~~----l~------------------~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~~-------------- 338 (619)
T 3s94_A 298 ACPTGVK----LL------------------ENGKTCKD--GATELLLL-ARRTDLRRISLDTPDF-------------- 338 (619)
T ss_dssp ECCTTCC----BC------------------TTSSCBCS--SCSEEEEE-EESSCEEEEESSSTTC--------------
T ss_pred eCCchhe----ec------------------ccCcccCC--CCceEEEE-EcccceEEEecCCCcc--------------
Confidence 00 0000 00 00000000 01112222 2233444444321110
Q ss_pred ccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEE
Q 001157 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la 898 (1135)
......+.+ -..+.+++|++.+..|..++ .+.|..+++........+...-.....+++.+.++++..
T Consensus 339 ------~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~ 408 (619)
T 3s94_A 339 ------TDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW 408 (619)
T ss_dssp ------CCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred ------ceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE
Confidence 011111222 34578899999777777665 688999998764433334333456788999873555666
Q ss_pred EEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCCC
Q 001157 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1135)
Q Consensus 899 sg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+-+..+.|.+.++........+...-....+|++.|...+|..+. ....|...+++..... ..... . ...
T Consensus 409 tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~~---~---l~~ 480 (619)
T 3s94_A 409 TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVNT---S---LGW 480 (619)
T ss_dssp EETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEECS---S---CSC
T ss_pred EeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEeC---C---CCC
Confidence 656678999999875533222333445678999999744444333 3356777777643321 11111 1 145
Q ss_pred ceeEEECCCCcEEEEEE--CCcEEEEeccCCcccccCC-CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCc
Q 001157 977 ETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSP-KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1135)
Q Consensus 977 v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~~~~~~-~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~ 1050 (1135)
...+++++++..|..+. .+.|..+++.+.....+.. ...| ..++++..+ .+.++-...+.|...|..+|.
T Consensus 481 P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~---P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH---IFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCS---SCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCC---cEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 68999999888888864 5678888885554443321 1222 234555433 333444456677777777773
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=3.7e-09 Score=116.14 Aligned_cols=224 Identities=13% Similarity=0.013 Sum_probs=151.0
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
-..++.|+|+++.+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 356889999877788888888999999998765321 1 123579999999999987765
Q ss_pred CCCeEEEEEcCCCCceeeeeEeec-C-CCCeeEEEEecCCCceEEEEEcC------CCcEEEEEcCCCeeEEEecCCCCC
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDA-H-VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~-h-~~~v~~l~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~l~~h~~~ 499 (1135)
.+ .|.+||..+++... ...... . ...+.+++++++|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876322 111111 1 23588999999998 4444332 24455555 55543 33233345
Q ss_pred eEEEEeccCCCccEE-EEEEcCCeEEEEeCC--CC-Cc-----eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 500 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 500 v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
...++|++++ +.+ ++.+.++.|.+||++ ++ .. ...+.........++++++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6789998765 555 445567899999986 44 21 112223345678999999998777653 256799
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEe-CCCCEEEEEec
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 608 (1135)
+||. +++.+..+..... .+.+++|+ ++++.|+.++.
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 9998 6777777776544 68999998 88887766543
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=4.2e-10 Score=137.64 Aligned_cols=244 Identities=11% Similarity=0.125 Sum_probs=161.8
Q ss_pred ccCCCeeEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC---
Q 001157 406 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1135)
Q Consensus 406 ~h~~~V~~v~~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--- 477 (1135)
+|...+..++|||||++||.+. .+..|++||+.+++.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 4556788999999999999643 235799999999875432 1211 113578999 999 566666553
Q ss_pred ----------cEEEEEcCCCe----eEEEecC-CCCCeEEEEeccCCCccEEEEEEc----CCeEEEEeCCCCC-ceEEe
Q 001157 478 ----------MIKVWDVVAGR----KQYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 537 (1135)
Q Consensus 478 ----------~i~iwd~~~~~----~~~~l~~-h~~~v~~l~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~-~~~~~ 537 (1135)
.|++|++.++. ++..... |...+.++.++|++ ++|+.... ++.|++||+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 49999998764 3333333 45567788887765 66644332 2589999998764 34455
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCce--eEEeecccCCceeEEEEeCCCCEEEEEec-CC--eE
Q 001157 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 612 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i 612 (1135)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555544444 6778887776654322357899999987654 345555555 333 89999998887664 43 68
Q ss_pred EEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCC----CcEEEEECCCc
Q 001157 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~~~~ 664 (1135)
++|++..+ ....+.... ...+..+.+++++..++....+ +++..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998854 344454322 2245566677888777665544 78999998776
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=2.3e-10 Score=125.72 Aligned_cols=183 Identities=9% Similarity=0.073 Sum_probs=135.8
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.++.+++++... ++++|+.+ .+.+|++..........- . ..+......+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~------~---~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDS------T---PLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSS------C---CCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcccc------c---cccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 67778776 556699865441110000 0 011111224566 999999 99999999
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998865433 45567788988887754 27788999999999999887653 456899999998
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCc--eEEe------c---CCCCeEEEEEEcCCCCEEEEEe
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
.+ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 64 67899999999998887664 4445 2 3568999999999999888654
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.7e-09 Score=117.71 Aligned_cols=230 Identities=11% Similarity=0.036 Sum_probs=156.0
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
+......+.|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 44567899999999878888888999999987 343211 223556789999999999777
Q ss_pred EEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEEEecCCCceEEEE----EcC-------------CCcEEEEEcCC
Q 001157 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 486 (1135)
Q Consensus 425 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s----~~~-------------d~~i~iwd~~~ 486 (1135)
+...++.|.+|+.+ ++.........+. ...+.+++++++|. +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 76667889999986 4422111111111 23577899999998 6665 332 25678888767
Q ss_pred CeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCc---eEEecCCCCeEEEEEEcCCCCEEE
Q 001157 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1135)
++..... .....+.++|+|++ +.|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654433 34456789998765 666666554 7899999875431 111122233456789999999555
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCe
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 611 (1135)
+. . + .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 43 1 2 3999998 577777776654 4788999999998888876543
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=5.5e-09 Score=126.24 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=131.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCC----------e-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~----------v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.++.++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4677777899999999999999887643210 0 12222 2267888899999999999999988877
Q ss_pred cCC-C----CeEEEEEEcCCCCEEEEEeeCCC--CCceEEEEeCCCCceeEEeecccCC---------------------
Q 001157 538 DAP-G----NWCTMMAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR--------------------- 589 (1135)
Q Consensus 538 ~~~-~----~~v~~~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~--------------------- 589 (1135)
... . ..+.+.-.. .+..++.++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 111111011 2345555442111 2578999999999998877643211
Q ss_pred ----------ceeEEEEeCCCCEEEEEecCC-------------------eEEEEECCCCeeeEEEeCCCCC-------C
Q 001157 590 ----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------P 633 (1135)
Q Consensus 590 ----------~v~~~~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~ 633 (1135)
....++++|+++.++.+..++ .|..+|..+++.+-.++...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 113478899999999877654 5999999999999888753221 1
Q ss_pred CcCeEEEecCC---CEEEEEeCCCcEEEEECCCcchhee
Q 001157 634 ASPRLRFNKEG---SLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 634 ~v~~~~~s~~~---~~l~~~~~dg~v~iw~~~~~~~~~~ 669 (1135)
....+....+| ..++.++.+|.++++|..+| +.+.
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~ 351 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFIS 351 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEE
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEec
Confidence 12222333477 68889999999999999999 4443
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=6.4e-09 Score=125.91 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=149.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCC----------Ce-eEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----------GV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+++++.++.|.-+|..+|+.+-.. ..+.. .+ ..++. ++. .++.++.|+.|..+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 567777778889999999999876532 21111 01 11233 244 57888899999999999999
Q ss_pred eEEEecCC--CCCeEEEEeccC-CCccEEEEEE------cCCeEEEEeCCCCCceEEecCCC------------------
Q 001157 489 KQYTFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (1135)
Q Consensus 489 ~~~~l~~h--~~~v~~l~~~~~-~~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~------------------ 541 (1135)
.+..+... ......+...|. .+ ..++.++ .+|.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98877542 111111111110 02 3444443 37899999999999877654210
Q ss_pred -------------CeEEEEEEcCCCCEEEEEeeCCC-----------CC----ceEEEEeCCCCceeEEeecccC-----
Q 001157 542 -------------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK----- 588 (1135)
Q Consensus 542 -------------~~v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~----- 588 (1135)
.....++++|++..++.+..++. ++ +.|..+|..+|+.+..+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788999898888764211 11 1499999999999988875311
Q ss_pred ---CceeEEEEeCCCC---EEEEEecCCeEEEEECCCCeeeEEEeCCC--------------------------------
Q 001157 589 ---RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDADG-------------------------------- 630 (1135)
Q Consensus 589 ---~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------- 630 (1135)
..........+|+ .++.++.+|.++++|..+|+.+.......
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1122222333564 78889999999999999999885543221
Q ss_pred -----CCCCcCeEEEecCCCEEEEEeCCCcEEEEECC
Q 001157 631 -----GLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 631 -----~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+...-..++|+|+..++++...+....++...
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence 00012247899998899988887776666543
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=8.7e-09 Score=124.47 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCC---------CCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~---------~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
+..|.+++.++.|.-+|..+|+.+-... ..... .....+++ ++. .++.++.|+.|..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~a~--~~~--~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVAL--WKG--KVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCccccccccccCCCCCceE--ECC--EEEEEcCCCEEEEEECCCCCEE
Confidence 5566677778889999999887654321 11100 00122333 344 5788889999999999999999
Q ss_pred EEecCC-C----CCeEE-EEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCCCe---------------
Q 001157 491 YTFEGH-E----APVYS-VCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNW--------------- 543 (1135)
Q Consensus 491 ~~l~~h-~----~~v~~-l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~--------------- 543 (1135)
.++..+ . ..+.+ ..+ . + ..++.++. ++.|+.||..+++.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~-~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--F-K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--E-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred eeecCCcCcCcCcccccCcEE--E-C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 888654 2 11111 111 1 2 35555543 799999999999988766432211
Q ss_pred -----------------EEEEEEcCCCCEEEEEeeCCC-----------CC----ceEEEEeCCCCceeEEeecccC---
Q 001157 544 -----------------CTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK--- 588 (1135)
Q Consensus 544 -----------------v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~--- 588 (1135)
...++++|++..++.+..+.. ++ +.|..+|..+|+.+..++....
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 135788999999887764210 11 3599999999999988765321
Q ss_pred -----CceeEEEEeCCC---CEEEEEecCCeEEEEECCCCeeeEEEeCCCCC----------------------------
Q 001157 589 -----RSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL---------------------------- 632 (1135)
Q Consensus 589 -----~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------------------- 632 (1135)
.....+....+| ..++.++.+|.++++|..+++.+..+......
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 112223344477 67888999999999999999998777532100
Q ss_pred -----CCcCeEEEecCCCEEEEEeCCCcEEEEEC
Q 001157 633 -----PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 633 -----~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 661 (1135)
..-..++|+|++.++++...+-...++..
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 00125788999888888877655555544
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.6e-09 Score=118.86 Aligned_cols=279 Identities=9% Similarity=-0.039 Sum_probs=177.2
Q ss_pred ceeecCCcceeEEEEecCCCCeeEEEeecCCCeEEEEEe---------CCCcEEEEEcCCccccccccceeecccccccc
Q 001157 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.+..+|..+.+.+.++.-...- .+.|||||+++.++.+ .++.|.+||..+++.+.+..+ ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-----~~~--- 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----PDA--- 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----TTS---
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-----CCc---
Confidence 4566778888898988833333 8999999996665542 478999999999987654110 000
Q ss_pred cccccccccCCCeeEEEEcCCCCEEEEEeC--CCeEEE--EEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc
Q 001157 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHL--YTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spdg~~la~~~~--dg~i~i--wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~ 474 (1135)
.... .......+++||||++|+++.. +..+.+ +|..+ +. .+.- .+ +..+.|+++. .+++.+
T Consensus 118 --~~~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~---~i~v-~~---~~~~~p~g~~-~~~~~~ 182 (368)
T 1mda_H 118 --PRFS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQ---LTKS-AS---CFHIHPGAAA-THYLGS 182 (368)
T ss_dssp --CSCC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EE---EEEC-SS---CCCCEEEETT-EEECCC
T ss_pred --cccc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ce---EEEC-CC---ceEEccCCCe-EEEEEc
Confidence 0000 0134668999999999999874 467888 88877 33 2221 11 1234567766 456667
Q ss_pred CCCcEEEEEcCC-----CeeEEE----ecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE--EecCC---
Q 001157 475 DDKMIKVWDVVA-----GRKQYT----FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAP--- 540 (1135)
Q Consensus 475 ~d~~i~iwd~~~-----~~~~~~----l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~--- 540 (1135)
.|+.+.+.|+.+ ++.+.. +.-...+. . .+++ ..++..+. +.+.+.|........ .+...
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~ 255 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG 255 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence 788888889876 443211 11112233 2 3333 44545555 899999986543222 11111
Q ss_pred ---CC----eEEEEEEcCCCCEEEEEee-C-CC---CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCE-EEEEe
Q 001157 541 ---GN----WCTMMAYSADGTRLFSCGT-S-KE---GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAG 607 (1135)
Q Consensus 541 ---~~----~v~~~~~s~~~~~l~~~~~-~-~~---~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 607 (1135)
.. ....++++||+++++.+.. . +. ....+.++|+.+++.+..+.... ....++|+|||++ +++..
T Consensus 256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEE
T ss_pred ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEcc
Confidence 01 1112689999999887542 1 10 01235699999999998887654 5788999999984 55565
Q ss_pred -cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec
Q 001157 608 -DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 608 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1135)
.++.|.++|+.+++.+.++..... ...+++.+
T Consensus 334 ~~~~~VsVID~~t~kvv~~I~vg~~---P~~i~~~~ 366 (368)
T 1mda_H 334 AGTEVLDIYDAASDQDQSSVELDKG---PESLSVQN 366 (368)
T ss_dssp TTTTEEEEEESSSCEEEEECCCCSC---CCEEECCC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCC---CCEEEeec
Confidence 599999999999999999875433 35555543
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=1.5e-08 Score=111.19 Aligned_cols=222 Identities=15% Similarity=0.050 Sum_probs=147.2
Q ss_pred eeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee
Q 001157 411 VNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 411 V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
..+.+|+|++. ++++...++.|..||..+++.. .+. +...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 45678999855 5555556889999999876432 122 345799999999997 55544 34 499999988875
Q ss_pred EEEecC----CCCCeEEEEeccCCCccEEEEEEc------CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 490 QYTFEG----HEAPVYSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 490 ~~~l~~----h~~~v~~l~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
...... ....+..+++++++ .++++... .+.|..++ ++ ....+.........++|+|+++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--KG-KVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--TT-EEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--CC-cEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 432221 12357888887754 66655432 24455555 33 333222223356789999999988766
Q ss_pred eeCCCCCceEEEEeCC--CC-ce-----eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCC
Q 001157 560 GTSKEGESHLVEWNES--EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.. ..+.|.+||.. ++ .. ...+.... .....++++++|+.+++...++.|.+|+. +++.+..+..+.
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~- 270 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG- 270 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC-
Confidence 42 35789999986 56 32 22222222 25678999999988777767789999998 577777776543
Q ss_pred CCCcCeEEEe-cCCCEEEEEeCC
Q 001157 632 LPASPRLRFN-KEGSLLAVTTSD 653 (1135)
Q Consensus 632 ~~~v~~~~~s-~~~~~l~~~~~d 653 (1135)
..+.+++|+ +++..|++++..
T Consensus 271 -~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 -KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -SBEEEEEEESTTSCEEEEEEBC
T ss_pred -CCcEEEEEecCCCCEEEEEecC
Confidence 358899998 888877666544
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.1e-09 Score=120.15 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=171.8
Q ss_pred eEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe--------
Q 001157 360 TILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-------- 427 (1135)
Q Consensus 360 ~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~-------- 427 (1135)
++.++...++ .|.+.|..+++.+.+. -.+. .+ .++++|||+++.++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 4555555555 8889999999877641 1122 34 799999999999986
Q ss_pred --CCCeEEEEEcCCCCceeeeeEeec-C----CCCeeEEEEecCCCceEEEEEcC--CCcEEE--EEcCCCeeEEEecCC
Q 001157 428 --SKHIVHLYTYNPTGELRQHLEIDA-H----VGGVNDIAFAHPNKQLCIVTCGD--DKMIKV--WDVVAGRKQYTFEGH 496 (1135)
Q Consensus 428 --~dg~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~l~~s~d~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~l~~h 496 (1135)
.++.|.+||..+++.+.... +.+ . ......++|+|||+. ++.+.. +..|.+ +|+.+ +.++..
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v- 164 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS- 164 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC-
Confidence 36889999999998776332 210 0 123568999999994 555543 467888 99877 444431
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC----CCceE-----EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
.+. ..+.|.+. ..+++.+.||.+.+.|+++ ..... .+.....+. + ++++..++..+. +
T Consensus 165 ~~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 165 ASC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp SSC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred CCc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 111 12334433 4556677888888888876 22111 011112233 3 566666665542 5
Q ss_pred eEEEEeCCCCc--eeEEeecc------cC---CceeEEEEeCCCCEEEEEec---------CCeEEEEECCCCeeeEEEe
Q 001157 568 HLVEWNESEGA--IKRTYSGF------RK---RSLGVVQFDTTRNRFLAAGD---------EFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 568 ~i~~wd~~~~~--~~~~~~~~------~~---~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 627 (1135)
.+.+.|..++. .+..+... .. .....+.++|++++++.+.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 68889986432 22222111 00 01222689999998887543 2356699999999988886
Q ss_pred CCCCCCCcCeEEEecCCC-EEEEEe-CCCcEEEEECCCcchheeecc
Q 001157 628 ADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 628 ~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 543 468999999998 455566 5899999999998 6666654
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.14 E-value=6.4e-08 Score=108.94 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=100.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCC---------CCCeEE-EEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEec
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h---------~~~v~~-l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1135)
.++.++.++.|..+|..+|+.+..+... ...+.+ +.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5778888999999999999988766542 122322 222 22678888999999999999998877665
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCc----eeEEEEeCCCCEEEEEecCCeEEE
Q 001157 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~i 614 (1135)
............ +..++.++ .++.|+.+|..+|+.+..+....... ....... +..++.++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHT----SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEEC----TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEc----CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221112222 34566654 36789999999999888776543210 0112222 457888888999999
Q ss_pred EECCCCeeeEEEeC
Q 001157 615 WDMDNMNMLTTVDA 628 (1135)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1135)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988877654
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=1.3e-08 Score=110.77 Aligned_cols=232 Identities=12% Similarity=0.071 Sum_probs=153.1
Q ss_pred cCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999999 55666678899999984 43 22 3344566789999999998 66666667889999975
Q ss_pred CCeeEEEec---C-CCCCeEEEEeccCCCccEEEE----EEc-------------CCeEEEEeCCCCCceEEecCCCCeE
Q 001157 486 AGRKQYTFE---G-HEAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 486 ~~~~~~~l~---~-h~~~v~~l~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~~~v 544 (1135)
++...... + ....++.+++.++ |.+.++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 65332211 1 1234667888764 477776 321 256777777655544332 33456
Q ss_pred EEEEEcCCCCEEEEEeeCC--CCCceEEEEeCCCCcee--EEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 545 TMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
..++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+..++ ..+ .|.+|+. ++
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 7899999999887765310 01367999998755411 1221111224556889999985444 444 5999998 57
Q ss_pred eeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
+.+..+.... .+.+++|+++++.|..++.++..
T Consensus 268 ~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 268 QLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp CEEEEEECSS---CCCEEEECTTSCEEEEEETTEEE
T ss_pred CEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEE
Confidence 7777776543 47899999999988888876433
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=1.6e-07 Score=105.67 Aligned_cols=258 Identities=11% Similarity=0.073 Sum_probs=163.5
Q ss_pred EEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 001157 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~ 441 (1135)
+++++.++.|..+|..+|+.+-+ .... ......... .+..+++++.++.|..+|..+|+
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~-------~~~~------------~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQ-------TKVA------------GEALSRPVV--SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE-------EECS------------SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEE-------EeCC------------CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 55677899999999999986532 1110 000111112 24578888899999999999988
Q ss_pred ceeeeeEeecCCCC-----eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCC-------eEEEEeccCC
Q 001157 442 ELRQHLEIDAHVGG-----VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-------VYSVCPHHKE 509 (1135)
Q Consensus 442 ~~~~~~~~~~h~~~-----v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~-------v~~l~~~~~~ 509 (1135)
.+... ...... ....... ++ .++.++.++.|..+|..+|+.+......... +..+...|.-
T Consensus 165 ~~W~~---~~~~~~~~~~~~~~~~~~-~~---~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 165 VKWTV---NLDMPSLSLRGESAPTTA-FG---AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp EEEEE---ECCC-----CCCCCCEEE-TT---EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred EEEEE---eCCCCceeecCCCCcEEE-CC---EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 65532 211111 0222222 33 5777888999999999999988776532110 0001111111
Q ss_pred CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC
Q 001157 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1135)
.+..++.++.++.+..+|..+++........ ....+.. ++..++.++. ++.|..+|..+|+.+.........
T Consensus 238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 238 VNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp ETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTTTS
T ss_pred ECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccCCC
Confidence 2257888888999999999988877665532 2334433 3566666653 667999999999988776632221
Q ss_pred ceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEE
Q 001157 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 660 (1135)
.+..... .+..++.++.+|.++++|..+++.+......... ....... .+..|+.++.+|.|..|+
T Consensus 310 ~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~-~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG-FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC-BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc-ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 2333333 2568888999999999999999998887753221 1122222 255778889999999886
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=6e-09 Score=115.10 Aligned_cols=301 Identities=10% Similarity=0.038 Sum_probs=181.4
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 458 ~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
++....++. +..++.++.|..|| .+++.+..+......+.++.... ++ .+..++.+ |..+|. +++....+
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEec--CC-cEEEecCc--EEEECC-CCcEEEEE
Confidence 345555665 66777888999999 88887766554444445555533 33 45555544 888885 44443333
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEEC
Q 001157 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
...........+. +..+..++. ++.|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|.
T Consensus 94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINP 164 (330)
T ss_dssp CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECT
T ss_pred ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECC
Confidence 3222222223333 445555542 5679999988 777766665433 456666777766 556777899999999
Q ss_pred CCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCC
Q 001157 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1135)
. ++.+....... ..+.++.+.+++.+.+ ++ +.+..+| .++.. ......
T Consensus 165 ~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-~~~~~~------------------------ 212 (330)
T 3hxj_A 165 D-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-KWNFYA------------------------ 212 (330)
T ss_dssp T-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE-EEEECC------------------------
T ss_pred C-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE-EEEEcc------------------------
Confidence 8 77776666442 2466777777776544 33 6777776 44311 100000
Q ss_pred CCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEE
Q 001157 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVR 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEE
Q 001157 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1135)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~ 857 (1135)
. ...+.+++++++|.+.+.
T Consensus 213 ------------------------------------------------------------~-~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 213 ------------------------------------------------------------G-YWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp ------------------------------------------------------------S-SCCCSCCEECTTSCEEEE
T ss_pred ------------------------------------------------------------C-CcceeceEECCCCeEEEE
Confidence 0 112334455556655444
Q ss_pred EeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCCC
Q 001157 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 858 ~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1135)
..++.|..+|. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT 307 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC
T ss_pred cCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE
Confidence 44667777763 4555555554444455566665 44 4556888888999995 6777777665566677888877776
Q ss_pred eEEEEcCCCcEEEEeCCC
Q 001157 938 ALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~ 955 (1135)
+ ..++.+|.+++...+.
T Consensus 308 l-~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 308 I-YFGTRNGKFYALFNLE 324 (330)
T ss_dssp E-EEECTTSCEEEEEC--
T ss_pred E-EEEcCCCeEEEEeccc
Confidence 4 4588899998887665
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=4.2e-08 Score=107.39 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=146.9
Q ss_pred CCcceeeeecc-cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEe-
Q 001157 782 NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1135)
Q Consensus 782 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~s- 859 (1135)
.++++|++.+. ++.|.++|+.+....+.-..+. + ..++... .+ ......+..+||| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i-------e--~~~~~~~--~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI-------E--PEEVKKV--SG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE-------C--HHHHHHH--HC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee-------c--hhhcccc--cC----CCcccceeECCCe-EEEEcCC
Confidence 77887766555 6889999876433211111000 0 0000000 00 1123457888999 555553
Q ss_pred C------CeEEEEeCCCceEEEEeeCCCC---CeeEEEEeCCCCcEEEEEe-------------------CCccEEEEEc
Q 001157 860 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 911 (1135)
Q Consensus 860 d------g~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~ 911 (1135)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. ...+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999873322 234588899 888888775 3689999999
Q ss_pred ccceEeEeecCc--cCceEEEEE--cCCCCeEEEEc------CCCcEEEEeCCCcccccceeeecCC----CCCC-----
Q 001157 912 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPA----GRQS----- 972 (1135)
Q Consensus 912 ~~~~~~~~l~~h--~~~i~~l~~--s~d~~~l~s~~------~D~~i~iWd~~~~~~~~~~~~~~~~----~~~~----- 972 (1135)
.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++-.....+.... +...
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 233456666 99999877666 4668888776654322222221111 0000
Q ss_pred ---CCCCceeEEECCCCcEEEEEE--CCcEEEEecc-C---CcccccCCCC-----CC------CCCeEEEEEccCCCEE
Q 001157 973 ---PLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-L---ECSRSWSPKD-----AL------PAPISSAIYSCDGLLV 1032 (1135)
Q Consensus 973 ---~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~-~---~~~~~~~~~~-----~h------~~~i~~~~~s~dg~~l 1032 (1135)
.......+.+|+||++|.++. .+.|.+||+. . +.+.....+. .| .+.-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 013468999999999999974 6789999982 2 2222221110 00 1124679999999999
Q ss_pred EEEe
Q 001157 1033 YAGF 1036 (1135)
Q Consensus 1033 ~s~~ 1036 (1135)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9888
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=1.7e-08 Score=114.74 Aligned_cols=238 Identities=11% Similarity=0.055 Sum_probs=161.5
Q ss_pred EEeec-----CCCEEEEEe--CCeEEEEeCCCceEEEEeeCCC-CCeeEEEE-e-CCCCcEEEEEe--------------
Q 001157 846 IALSK-----NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPP-PAATFLAF-H-PQDNNIIAIGM-------------- 901 (1135)
Q Consensus 846 l~~s~-----dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~-s-p~~~~~lasg~-------------- 901 (1135)
..+|. ||+++.+.. ++.|.+.|+.+.++...+.-.. ..+..+++ + | ++.++.+++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55555 999999887 5779999999999888654333 45888998 5 8 777877774
Q ss_pred ----CCccEEEEEcccceEeEeecCccCceEEEEEcCCCCeEEEEcCCC-------------------------------
Q 001157 902 ----EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA------------------------------- 946 (1135)
Q Consensus 902 ----~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~------------------------------- 946 (1135)
.++.+.+.|.++.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34689999999999888876322 356788999999988887543
Q ss_pred -------cEEEEeCCC--cccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE--ECCcEEEEeccCC----------
Q 001157 947 -------QLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE---------- 1005 (1135)
Q Consensus 947 -------~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~~---------- 1005 (1135)
.|.+.|..+ ++.. ...+.. + ....++.++|||++++++ .+.+|.++|+...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~-~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLF-TRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSS-EEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEECcEEEEeCcccCCcee-EEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 366666665 2210 011111 1 235689999999999996 4788999999422
Q ss_pred ---cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC----------CceeeccCCCcccCccccCCCCCC
Q 001157 1006 ---CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSSNTAH 1072 (1135)
Q Consensus 1006 ---~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1135)
....... ...-..++|++||....+...|+.|.+||+++ ...+.++..+ |.| +|...
T Consensus 320 ~~~v~~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-----Gh~~~ 389 (595)
T 1fwx_A 320 RSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-----GHLKT 389 (595)
T ss_dssp GGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-----EEEEE
T ss_pred ccceEEEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-----cccee
Confidence 1122221 45688999999994344566799999999987 3444444322 222 22112
Q ss_pred cEEEeeCCCCCCEEEEEecCC--cE-----------EEEecCCCc
Q 001157 1073 PLVIAPHPSEPNQIALGMSDG--AV-----------HVVEPSDAE 1104 (1135)
Q Consensus 1073 ~~~~~~sp~~~~~l~s~~~Dg--~i-----------~lW~~~~~~ 1104 (1135)
...+..+| ||++|+++..-. ++ .|+|++.++
T Consensus 390 ~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 390 VMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 22334577 889999877533 33 789997666
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=2.9e-09 Score=120.82 Aligned_cols=273 Identities=17% Similarity=0.113 Sum_probs=171.3
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEE-e-CCCCEEEEEe------------------cCC
Q 001157 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG------------------DEF 610 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~dg 610 (1135)
+||++++.+.. .+..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48999988653 46789999999999888554433335777887 5 9999999984 346
Q ss_pred eEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCC
Q 001157 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+.|..+.+...++...+. ...++++|+|+++++.+.+..- + ..+......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~---------------- 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAA---------------- 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCC----------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhcccc----------------
Confidence 799999999999998875432 3678899999999998865320 1 000000000
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCC
Q 001157 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1135)
.-..+.+.+....
T Consensus 229 ----------------------------------------------------~~d~v~V~~~~~~--------------- 241 (595)
T 1fwx_A 229 ----------------------------------------------------EMDHIVVFNIAEI--------------- 241 (595)
T ss_dssp ----------------------------------------------------SEEEEEEEEHHHH---------------
T ss_pred ----------------------------------------------------ccceEEEeeccce---------------
Confidence 0011111111110
Q ss_pred CCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec
Q 001157 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1135)
Q Consensus 771 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~ 850 (1135)
..+.++|+.... +.|.+.|....+ +......++. .....++.++|
T Consensus 242 -------~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ipv----g~~PhGv~~sP 286 (595)
T 1fwx_A 242 -------EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIPI----ANNPHGCNMAP 286 (595)
T ss_dssp -------HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEEE----ESSCCCEEECT
T ss_pred -------eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEec----CCCceEEEEcC
Confidence 002223332222 235555543210 1110000111 22344799999
Q ss_pred CCCEEEEEe--CCeEEEEeCCCce------------EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---
Q 001157 851 NDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--- 913 (1135)
Q Consensus 851 dg~~la~~s--dg~i~iwd~~~~~------------~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~--- 913 (1135)
||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++..-|+.|.+||+.+
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~ 364 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIR 364 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHH
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhh
Confidence 999999887 6899999999753 333333 234578999999 776666777899999999987
Q ss_pred -------ceEeEeecCccCce-----EEEEEcCCCCeEEEEc---CCCc----------EEEEeCCCcc
Q 001157 914 -------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSG---ADAQ----------LCMWSIDKWE 957 (1135)
Q Consensus 914 -------~~~~~~l~~h~~~i-----~~l~~s~d~~~l~s~~---~D~~----------i~iWd~~~~~ 957 (1135)
.+.+.++..|-.+- .++.++|||++|++.. .|+- -.++|+.+++
T Consensus 365 ~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 365 AYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777776664421 2235589999999874 3442 1889996544
No 241
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.04 E-value=4.4e-05 Score=90.55 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=119.9
Q ss_pred CCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
.-..+.+++|++.+..++.+-...+.|..+++........ ++...-.....+++.+.+..|.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly 99 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLY 99 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEE
Confidence 4457889999997776776666678888888875421100 1112224688999999666555
Q ss_pred EE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEEcCCCeeEEEe-cCCCCCeE
Q 001157 425 VA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVY 501 (1135)
Q Consensus 425 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~l-~~h~~~v~ 501 (1135)
.+ ...+.|.+.++++..... .+...-.....|++.|.+.. +++|- +..+.|...++. |.....+ ...-...+
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 54 567899999988653221 12233445778999997663 33333 234667777754 4333333 23345678
Q ss_pred EEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 502 ~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.|++++.. +.+.++-...+.|...|++................++++..+ .++.+.. +.+.|...|..+++..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 89998754 255555566778988888754333322212223346666554 5555432 3566888887766543
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=7.4e-08 Score=105.45 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=150.9
Q ss_pred e--cCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccC-CCeeEEEEcCCCCEEEEEeCC--
Q 001157 355 H--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSK-- 429 (1135)
Q Consensus 355 s--pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~la~~~~d-- 429 (1135)
+ ++++++++.|-.++.|.|.|+.+.....+ -.++.+ +..+..... ..-..+..+||| .++++..+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~-~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~ 159 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPK-IIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE 159 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE-EEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCce-eeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCCcC
Confidence 7 89998888888999999999975421100 000000 000111111 134567888999 66666555
Q ss_pred ----CeEEEEEcCCCCceeeeeEeecCC-CCeeEEEEecCCCceEEEEEc-------------------CCCcEEEEEcC
Q 001157 430 ----HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWDVV 485 (1135)
Q Consensus 430 ----g~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~-------------------~d~~i~iwd~~ 485 (1135)
+.|.++|.++.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||+.
T Consensus 160 g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 160 GEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp SCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 789999999988766332 12222 2234688999999 677764 47899999999
Q ss_pred CCeeEEEecCC-C-CCeEEEEeccCCCccEEEEEE------cCCeEEEEeCCCCCceE--E--ecCC-------------
Q 001157 486 AGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRV--D--YDAP------------- 540 (1135)
Q Consensus 486 ~~~~~~~l~~h-~-~~v~~l~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~--~--~~~~------------- 540 (1135)
+++.+.++.-- . .....+.|..+++++++..++ .+++|.+|..+.+.... . +...
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888887642 1 234455563344446666555 56788877665432111 1 1110
Q ss_pred ---CCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC---CceeEEeecccC-------------CceeEEEEeCCCC
Q 001157 541 ---GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRK-------------RSLGVVQFDTTRN 601 (1135)
Q Consensus 541 ---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~-------------~~v~~~~~s~~~~ 601 (1135)
......+.+|+||++|+++.. +.+.|.++|+.. .+.+..+..... ..-..+.++|||+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred ccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence 235678999999999998764 577899999853 345555443210 0246789999999
Q ss_pred EEEEEe
Q 001157 602 RFLAAG 607 (1135)
Q Consensus 602 ~l~~~~ 607 (1135)
+|+++.
T Consensus 394 ~LyVaN 399 (462)
T 2ece_A 394 RVYVTN 399 (462)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999876
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=5.9e-10 Score=124.55 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=112.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67889999999999999999998765 3333 4565666667777 677788999999999999998777654321
Q ss_pred CeEEEEeccCC-CccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 499 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 499 ~v~~l~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
... ..+|.- ++..+++++.|+.|+.||..+++.+..+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 011111 23578888999999999999988877665443 2345678888888764 678999999999
Q ss_pred ceeEEeecccCCceeEEEEeCCC---CEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876665321 1223334432 5677788999999999999998877764
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=5e-08 Score=107.60 Aligned_cols=265 Identities=12% Similarity=0.017 Sum_probs=172.5
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
..+.++.+.++|. ++ .|+.+ |..+|. +++.+.... ..........+. +..|.++
T Consensus 60 ~~~~~~~~~~~g~-l~-v~t~~--l~~~d~-~g~~~~~~~-------------------~~~~~~~~~~~~--~~~l~v~ 113 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IY-FGSDK--VYAINP-DGTEKWRFD-------------------TKKAIVSDFTIF--EDILYVT 113 (330)
T ss_dssp EEEECCEETTTTE-EC-CSSCE--EEEECC-CGGGGGGSC-------------------C-----CCEEEE--TTEEEEE
T ss_pred CcccceEEecCCc-EE-EecCc--EEEECC-CCcEEEEEE-------------------CCCCcccCceEE--CCEEEEE
Confidence 3457778888885 44 45544 888886 555443211 111112223333 5567778
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
+.++.+..+|.. ++... ....+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...
T Consensus 114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 889999999988 65443 3333445567777777776 5667788999999988 88777776555566666654
Q ss_pred cCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecc
Q 001157 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
. ++. +..++ +.|..+| .+++...........+.++...++|...+... ++.|..+|. +++.+..+...
T Consensus 186 ~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 K--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp T--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEECS
T ss_pred C--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeCC
Confidence 3 334 44444 8899999 66666666666666788888888887666542 456888874 56666666543
Q ss_pred cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
.. .+..+.+.+++ .|+.++.+|.|..+|. +++.+....... ..+.++...++|. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 34445555555 5667778889999996 677776666442 3567788878876 45588999999877543
No 245
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.96 E-value=0.00049 Score=87.21 Aligned_cols=283 Identities=7% Similarity=0.041 Sum_probs=148.0
Q ss_pred eEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC----CCEEEE
Q 001157 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 425 (1135)
Q Consensus 350 ~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~la~ 425 (1135)
.|+++-.+| +++.|+..|.=.+|.+.....-....+.+.+ .+ ..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 556666666 6778888888888887653211000001000 01 23457777776432 235555
Q ss_pred Ee---CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEec---CCCceEEEEEcCCCcEEEEEcCCCeeEEEec--CCC
Q 001157 426 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 497 (1135)
Q Consensus 426 ~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~--~h~ 497 (1135)
++ .+|.+++..-.-+-.......+.+ -..++.+.... ... +|+.+..+.+ .|+.+. ++.+..+. +..
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccccc
Confidence 54 367888875432221111123332 24566665432 123 6666666655 555543 22333332 211
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+.+..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111222111111 2333332 2346667665444554555433 3566666543 4565553 34577777766
Q ss_pred CceeEEeecccCCceeEEEEeCC------CCEEEEEec-CCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEec--CCCEE
Q 001157 577 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 647 (1135)
++........-...|.|+++.|. +++++.|.. |++|+|+++.+.+.+........ ....++.+.. ...+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54333222222337999998863 368888885 99999999998777765554321 1234444432 34578
Q ss_pred EEEeCCCcEEEEEC
Q 001157 648 AVTTSDNGIKILAN 661 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~ 661 (1135)
.+|-.||.+.-+.+
T Consensus 621 ~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 621 LCALGDGALFYFGL 634 (1158)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 88888988766654
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=9.1e-10 Score=123.01 Aligned_cols=258 Identities=10% Similarity=-0.006 Sum_probs=136.4
Q ss_pred CCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001157 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd 436 (1135)
++. .+++|+.||.|..||..+|+.+-+ . .. +.+.+..+..++..+++++.|+.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~-------~------------~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWT-------L------------KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEE-------E------------EC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEE-------e------------cC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 344 577889999999999999987642 1 11 3444555667888888888999999999
Q ss_pred cCCCCceeeeeEeecCCC-Cee-EEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE
Q 001157 437 YNPTGELRQHLEIDAHVG-GVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~-~v~-~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l 514 (1135)
..+|+.+.. +..+.. .+. +..+. ++. .+++++.|+.|+.||..+|+.+..+..+.. ..++| ++..+
T Consensus 66 ~~tG~~~w~---~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v 133 (369)
T 2hz6_A 66 SKNNEGLTK---LPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLL 133 (369)
T ss_dssp ----CCSEE---CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------E
T ss_pred CCCCceeee---eeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEE
Confidence 998876542 222211 111 11111 233 577788899999999999999888765542 23444 44789
Q ss_pred EEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC---CEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCce
Q 001157 515 FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
++++.|+.|+.||.++++....+... .....+++.+. ..+++++ .++.|+.||..+|+.+..+..... .+
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~----~dg~v~a~d~~tG~~~W~~~~~~p-v~ 206 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFVSN----GDGLVVTVDSESGDVLWIQNYASP-VV 206 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEEEE----TSCEEEEECTTTCCEEEEEECSSC-EE
T ss_pred EEEecCCEEEEEECCCCCEEEeEecc--cccCccccCCccccceEEEEC----CCCEEEEEECCCCcEEEEecCCCc-eE
Confidence 99999999999999988876554321 11223333332 4455554 378899999999998887764322 33
Q ss_pred eEEEEeCCCCEEEE--EecCCeEEEEECCCCe----eeEEEeCCCCCCCcCeEEEec--CCCEEEEEeCCCcEEEEECC
Q 001157 592 GVVQFDTTRNRFLA--AGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 592 ~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~ 662 (1135)
....+++++...+. ...++.++.+|..+|+ .+....... .+. +| .+..|+.++.+|.++.++..
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~---~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK---ETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC---HHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc---ccc----ccccccceEEEecccCCEEecCcc
Confidence 33445555543211 0013345566665554 332222111 111 22 34567778888888888765
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=1.4e-06 Score=105.13 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=87.9
Q ss_pred cEEEEEEcCCeEEEEeCCCCCceEEecCCCCe-----------EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCcee
Q 001157 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|.-+|..+++.+..+...... ...+++ .+..++.++ .++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 56777888899999999998888776543221 011222 345666664 3788999999999999
Q ss_pred EEeecccCC---ceeE-EEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEEeCCCCC------------------
Q 001157 581 RTYSGFRKR---SLGV-VQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDADGGL------------------ 632 (1135)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------ 632 (1135)
..+...... .+.+ ..+ .+..++++.. +|.|+.+|..+|+.+-.+......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 887653210 1111 111 1345555543 589999999999999887642110
Q ss_pred -----------CCcCeEEEecCCCEEEEEeCCCc
Q 001157 633 -----------PASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 633 -----------~~v~~~~~s~~~~~l~~~~~dg~ 655 (1135)
.....+++.++..+++.++.++.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 01134788888888888877653
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=1e-05 Score=85.56 Aligned_cols=224 Identities=10% Similarity=0.021 Sum_probs=144.8
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC
Q 001157 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
..+.+++|++++..|..+ ..++.|..++..++.... .+.........+++++++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 357899999977666555 457899999998754321 22222346789999998664 4555666789999997643
Q ss_pred eeEEEecCCCCCeEEEEeccCCCccEEEEEEc--CCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001157 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 488 ~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
.....+.........++++|.+ +.++++... .+.|..++++.................+++++++..|+.+.. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~ 187 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G 187 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence 3222222222456889998754 244444433 468888887654333233233456889999999888877653 4
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
.+.|..+|.........+... . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|++
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~ 262 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQ 262 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSC
T ss_pred CCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCcc
Confidence 678999998754433333322 2 33456554 45555554 66899999999999988886432 1236788888876
Q ss_pred C
Q 001157 645 S 645 (1135)
Q Consensus 645 ~ 645 (1135)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.81 E-value=0.00078 Score=79.89 Aligned_cols=520 Identities=9% Similarity=0.012 Sum_probs=270.2
Q ss_pred CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceee
Q 001157 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQ 445 (1135)
Q Consensus 367 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~ 445 (1135)
..+.|+.-++.+....... .+ ..-..+..++|++.+..|..+ ..++.|..++++......
T Consensus 13 ~~~~I~~i~l~~~~~~~~~-----------------~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~- 73 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAI-----------------PL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH- 73 (628)
T ss_dssp ETTEEEEEESSCTTCEEEC-----------------CC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred eCCcEEEEECCCCCcceEE-----------------Ec-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-
Confidence 3568888888764321100 01 122457899999976666655 457889999987653321
Q ss_pred eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEE-EcCCeEE
Q 001157 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIK 524 (1135)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~-s~dg~i~ 524 (1135)
.+.........+++.+.+.. +.++-...+.|.+.++........+...-.....|++.|.. |.++++- +..+.|.
T Consensus 74 --v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 74 --VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKID 149 (628)
T ss_dssp --EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEE
Confidence 22222245778999877664 44566667899999976443222222344557899998754 2444443 2356788
Q ss_pred EEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEE
Q 001157 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1135)
..+++........ ........++++++++.|+.+-. +.+.|...|+..... ..+..... ....+++.. ..++
T Consensus 150 r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav~~--~~ly 221 (628)
T 4a0p_A 150 RAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQYQ--DYIY 221 (628)
T ss_dssp EEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEEET--TEEE
T ss_pred EEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEEEC--CEEE
Confidence 8887755444333 34557889999999888887753 467899999865433 33333222 345677764 3454
Q ss_pred EEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEE-EecCCCEEEEEeCCCcEEEEECCCcchheee-ccCc-ccccCC
Q 001157 605 AAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGSLLAVTTSDNGIKILANSDGVRLLRM-LEGR-AMDKNR 680 (1135)
Q Consensus 605 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~-~~~~~~ 680 (1135)
.+. ..+.|...|..+++....+..... ....+. +++..+. +..... ..++ .+.+. +... ....-.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~~n~C~-----~~ng-~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---GWNECA-----SSNG-HCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---CCCTTT-----TTGG-GCSSEEEEETTTEEEEE
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---cceEec-----cCCC-CcchhhhcCCCCCeeEE
Confidence 444 678899999888876666653321 233332 2221110 000000 0000 00000 0000 000000
Q ss_pred CCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCc
Q 001157 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1135)
|+.. +.+.++ ...+ .+...+++.+....|+-..+......
T Consensus 291 C~~g---------------------~~l~~d----------------~~~C-~~~~~~Ll~s~~~~i~~i~l~~~~~~-- 330 (628)
T 4a0p_A 291 CPAH---------------------YSLNAD----------------NRTC-SAPTTFLLFSQKSAINRMVIDEQQSP-- 330 (628)
T ss_dssp CSTT---------------------CEECTT----------------SSCE-ECCSSEEEEEETTEEEEECCCTTCCC--
T ss_pred cCCC---------------------cEeccc----------------CCcC-ccccceeeeeccceEEEEecccccCc--
Confidence 0000 000000 0000 11123344444444443333221100
Q ss_pred eeEEEcCCCCCCCceEEEEEeCCcceeeeecc-cceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCC
Q 001157 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 839 (1135)
...++.. .-..+..++|.+....|..+.. .+.|+.++..... .. .++.....+...
T Consensus 331 --~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-------~~------------~v~~~~~~~~~~- 387 (628)
T 4a0p_A 331 --DIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-------GF------------TVVVSSVPSQNL- 387 (628)
T ss_dssp --CEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CE------------EEEC---------
T ss_pred --eEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-------ce------------EEEEcccccccc-
Confidence 0112211 2345778999887665655443 4666666432110 00 011000000001
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEe-eCCCCCeeEEEEeCCCCcEEEEEeCCc--cEEEEEcccc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVD 914 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~ 914 (1135)
...+..+++...++.|..+. .+.|.+.++. |+....+ .........|++.|..+.++.+-.... .|...+++..
T Consensus 388 ~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~ 466 (628)
T 4a0p_A 388 EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT 466 (628)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC
Confidence 34578999999888776665 6889999986 4444443 334567899999994454444432222 5666666543
Q ss_pred eEeEeecCccCceEEEEEcCCCCeEEEE-cCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-
Q 001157 915 EVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV- 992 (1135)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~- 992 (1135)
.........-....+|++.++++.|..+ +..+.|...+++..... .+.. +.. .....++... ..|+.+
T Consensus 467 ~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~--~~ly~tD 536 (628)
T 4a0p_A 467 EREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE--NWLYWID 536 (628)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET--TEEEEEE
T ss_pred CcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC--CEEEEEE
Confidence 3322233334457899999987766655 44578999998654321 1211 111 2345666544 344443
Q ss_pred -ECCcEEEEec
Q 001157 993 -HESQISVYDS 1002 (1135)
Q Consensus 993 -~d~~i~vwd~ 1002 (1135)
..+.|...|.
T Consensus 537 ~~~~~i~~~~k 547 (628)
T 4a0p_A 537 KQQQMIEKIDM 547 (628)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEEC
Confidence 3455666665
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=2e-06 Score=88.76 Aligned_cols=208 Identities=8% Similarity=-0.026 Sum_probs=140.5
Q ss_pred cceeEEEEecCCCC--eeEEEeecCCCeEEEEEeC--CCcEEEEEcCCccccccccceeecccccccccccccccccCCC
Q 001157 335 LTKTVVRTLNQGSN--VMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~--V~~~~fspdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+.+.+.++.|... ...++|+|||. +.++.+. ++.|.+.|+.+++.+.... +..+ ..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~f 67 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YF 67 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CC
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cc
Confidence 34677888887754 68999999975 5555443 5799999999998775311 1111 11
Q ss_pred eeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee
Q 001157 411 VNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 411 V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
...+++ +|+.|..+ -.++.+.++|..+.+.+. .+..-.. ....+++||+. ++.+..++.|.++|..+.+.
T Consensus 68 geGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~~---~i~~g~~--~g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 68 GEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNIK---NFTHQMK--DGWGLATDGKI--LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEEE--ETTEEEEEETTCSEEEEEETTTTEEEE---EEECCSS--SCCEEEECSSS--EEEECSSSEEEEECTTTCCE
T ss_pred eEEEEE--eCCEEEEEEecCCEEEEEECCCCcEEE---EEECCCC--CeEEEEECCCE--EEEECCCCeEEEEECCCCcE
Confidence 223444 45555555 457899999999987665 3321111 12446678885 44445688999999999988
Q ss_pred EEEecCCC-----CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC-------------CCeEEEEEEcC
Q 001157 490 QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSA 551 (1135)
Q Consensus 490 ~~~l~~h~-----~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~ 551 (1135)
+..+.-.. ...+.+.|. +|...+....++.|.+.|..+++....+... ......++|+|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 88775321 236677776 3455566657899999999999887766542 13568999999
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCC
Q 001157 552 DGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
+++.+++++. ....+.+.++..
T Consensus 216 ~~~~lfVTgk---~~~~v~~i~l~~ 237 (266)
T 2iwa_A 216 ENKRIFVTGK---LWPKLFEIKLHL 237 (266)
T ss_dssp TTTEEEEEET---TCSEEEEEEEEE
T ss_pred CCCEEEEECC---CCCeEEEEEEec
Confidence 9998887763 456677777654
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.70 E-value=9.2e-07 Score=91.20 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=141.0
Q ss_pred CeeEEEeecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCC-CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 842 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
....++|++|+.+.++.+ ++.|.++|+.+++.+..+.-... ....++++. +++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555543 47899999999999998763222 234566653 455555557889999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
.++..-... ...+++||+.++.+..++.|.++|..+.+......+.. .+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~------------------~~----------- 148 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY------------------NG----------- 148 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT-----------
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC------------------CC-----------
Confidence 988532111 23456788877777778899999998866332211110 00
Q ss_pred EEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCc--cccCCCCCCcEE
Q 001157 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT--YAVSSNTAHPLV 1075 (1135)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1075 (1135)
+. -...+.+.|. ||+..+....++.|.+.|..+++.+.++......+. .........+..
T Consensus 149 -------~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -------HR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -------cc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 00 1235677777 776555555678999999999999988864311110 000011245678
Q ss_pred EeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1076 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1076 ~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
++|+|++.++++++...+.+.+-++....
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999656677888888999999987543
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=4.3e-06 Score=98.59 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=69.7
Q ss_pred cEEEEEEc-CCeEEEEeC-CCCCceEEecCCCCe-----------EEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 512 ~~l~s~s~-dg~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
..++.++. ++.|.-+|. .+++.+......... ...+++ ++..++.++ .++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ----ANGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe----CCCEEEEEECCCCC
Confidence 45666666 788888888 788877765543210 011222 345666664 37789999999999
Q ss_pred eeEEeecccC---Ccee-EEEEeCCCCEEEEEec------CCeEEEEECCCCeeeEEEeCC
Q 001157 579 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..+..... ..+. ..... +..+++++. ++.|+.+|..+++.+-.+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 9887654320 0111 11111 345666554 799999999999998887643
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.70 E-value=2.2e-05 Score=83.07 Aligned_cols=241 Identities=8% Similarity=-0.026 Sum_probs=148.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCcee--eeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~ 498 (1135)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..+|+..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 44555543 478889987654210 00011112235789999997764 455666788999999876554333333335
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
....+++++.+ +.++++....+.|.+++++.................++++|++..|+.+... ...+.|..+++.. .
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDG-T 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTS-C
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCC-C
Confidence 67889998753 2556666677899999987544333333333567899999987777665421 1146788888753 3
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
....+....-.....++++++++.|+.+. ..+.|.+++.........+... .....++.. ++.++++....+.|.
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCCeEE
Confidence 33333211222567899999887776655 6689999999865544444321 123566654 344444444568999
Q ss_pred EEECCCcchheeec
Q 001157 658 ILANSDGVRLLRML 671 (1135)
Q Consensus 658 iw~~~~~~~~~~~~ 671 (1135)
.++..++ +....+
T Consensus 233 ~~d~~~g-~~~~~i 245 (267)
T 1npe_A 233 AMDLAIS-KEMDTF 245 (267)
T ss_dssp EEETTTT-EEEEEE
T ss_pred EEeCCCC-CceEEE
Confidence 9999887 444444
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=2.2e-06 Score=87.01 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=125.0
Q ss_pred eeEEEeecCCCEEEEEe-CC--eEEEEeCCCceEEEEeeCCCCCee--EEEEeCCCCcEEEEEeCCccEEEEEcccceEe
Q 001157 843 AACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~~~~~~~~v~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 917 (1135)
...+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.-.. ... .+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 4678998 666555555 55 79999999999999887543 333 35554 3445444556889999999999999
Q ss_pred EeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcE
Q 001157 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1135)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i 997 (1135)
.++..-. ....+++|++.|+....++.|.++|..+.+......+. .+|+
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~------------------~~g~---------- 169 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT------------------AHGE---------- 169 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE------------------ETTE----------
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec------------------cCCc----------
Confidence 9887532 22334467777776666788999999986643221110 0000
Q ss_pred EEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc-cCCCCCCcEEE
Q 001157 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA-VSSNTAHPLVI 1076 (1135)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1076 (1135)
. -..++.+.|. +|++.+..-.+..|.+.|..+|+.+..+......+... ........-.+
T Consensus 170 --------~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGI 230 (262)
T 3nol_A 170 --------E----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGI 230 (262)
T ss_dssp --------E----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEE
T ss_pred --------c----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEE
Confidence 0 1234456665 78766655578899999999999999887554333210 01122455689
Q ss_pred eeCCCCCCEEEEE
Q 001157 1077 APHPSEPNQIALG 1089 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~ 1089 (1135)
+|+|+..+++++|
T Consensus 231 A~dp~~~~lfVTG 243 (262)
T 3nol_A 231 AWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEC
Confidence 9999544445544
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=5.2e-06 Score=100.11 Aligned_cols=269 Identities=9% Similarity=0.048 Sum_probs=166.3
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeC------CCeEEE
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS------KHIVHL 434 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~------dg~i~i 434 (1135)
.+++++.|+.|..+|..+|+.+-+ ......... ......++ + .++ .++++.. +|.|..
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~-------~~~~~~~~~---~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWS-------QQTTDPAKP---YSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEE-------EECSCTTSS---CBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeee-------eccCCCCCc---ceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEE
Confidence 356678899999999999987642 211100000 00011111 1 134 4444432 589999
Q ss_pred EEcCCCCceeeeeEeecC----------------------------CCCeeEEEEecCCCceEEEEEcCCC---------
Q 001157 435 YTYNPTGELRQHLEIDAH----------------------------VGGVNDIAFAHPNKQLCIVTCGDDK--------- 477 (1135)
Q Consensus 435 wd~~~~~~~~~~~~~~~h----------------------------~~~v~~l~~s~d~~~~~l~s~~~d~--------- 477 (1135)
+|..+|+.+-......+. ......+++.+++. +++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~--~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD--LLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHS
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC--EEEEeCCCCCccccCCCC
Confidence 999999876543221110 11123578888877 677776665
Q ss_pred ----------cEEEEEcCCCeeEEEecC--CC-------CCeEEEEeccCCC-ccEEEEEEcCCeEEEEeCCCCCceEEe
Q 001157 478 ----------MIKVWDVVAGRKQYTFEG--HE-------APVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 478 ----------~i~iwd~~~~~~~~~l~~--h~-------~~v~~l~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~ 537 (1135)
.|..+|..+|+.+..++. |. .+.....+..++. ...++.++.+|.++++|..+++.+...
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 499999999999987764 32 2222222222221 126889999999999999998876432
Q ss_pred cCCC------------CeE------------------------EEEEEcCCCCEEEEEeeC-------------------
Q 001157 538 DAPG------------NWC------------------------TMMAYSADGTRLFSCGTS------------------- 562 (1135)
Q Consensus 538 ~~~~------------~~v------------------------~~~~~s~~~~~l~~~~~~------------------- 562 (1135)
.... ..+ ..++++|+...++....+
T Consensus 341 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~ 420 (668)
T 1kv9_A 341 KFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFN 420 (668)
T ss_dssp ESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCC
T ss_pred cccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccc
Confidence 2111 011 126788887777653210
Q ss_pred -------------CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 563 -------------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 563 -------------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
...++.|..||+.+|+.+....... ......+...+..++.++.|+.++.||..+++.+..+...
T Consensus 421 ~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 421 TAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp CSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 0123789999999999988776543 2333345567889999999999999999999999998865
Q ss_pred CCCCCcCeEEEecCCCE-EEEE
Q 001157 630 GGLPASPRLRFNKEGSL-LAVT 650 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~-l~~~ 650 (1135)
... ...-+.+..+|++ ++.+
T Consensus 499 ~~~-~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 499 SGI-VAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp SCC-CSCCEEEEETTEEEEEEE
T ss_pred CCc-ccCceEEEECCEEEEEEE
Confidence 432 2234556667763 4433
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.62 E-value=3.8e-05 Score=90.52 Aligned_cols=191 Identities=10% Similarity=0.030 Sum_probs=121.6
Q ss_pred EEEEEcC-CCcEEEEEc-CCCeeEEEecCCCC-C---------e-EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-P---------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 469 ~l~s~~~-d~~i~iwd~-~~~~~~~~l~~h~~-~---------v-~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666666 889999999 89999887653221 0 0 11222 12578888899999999999998887
Q ss_pred EecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCceEEEEeCCCCceeEEeecccCC-------------------
Q 001157 536 DYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 589 (1135)
Q Consensus 536 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 589 (1135)
....... .+.+ ... .+..+++++... ..++.|+.+|..+|+.+.++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 1111 111 134555554211 01678999999999998877643210
Q ss_pred ------------------ceeEEEEeCCCCEEEEEecC----------------CeEEEEECCCCeeeEEEeCCCCC---
Q 001157 590 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 632 (1135)
Q Consensus 590 ------------------~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 632 (1135)
....+++.++...++.+..+ +.|..+|..+++.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00135677777777776532 36999999999998888753221
Q ss_pred -CCcCe---EEEecCCC---EEEEEeCCCcEEEEECCCcc
Q 001157 633 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 -~~v~~---~~~s~~~~---~l~~~~~dg~v~iw~~~~~~ 665 (1135)
..+.. +....+|+ .++.++.+|.+.++|..+++
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 01112 22224674 67788889999999999993
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=1e-05 Score=88.45 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=147.5
Q ss_pred eeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCC-------------------CCCeeEEEEeCCCCcEEEEEeC
Q 001157 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-------------------PPAATFLAFHPQDNNIIAIGME 902 (1135)
Q Consensus 843 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~-------------------~~~v~~l~~sp~~~~~lasg~~ 902 (1135)
..+++++++|+++.++. ++.|..||..+++........ ...+..+++++++++ |.+++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 45689999999677766 889999998876543221100 135788999973444 444555
Q ss_pred CccEEEEEcccceEeEeec----C-ccCceEEEEEcC-CCCeEEEEcC-----------------CCcEEEEeCCCcccc
Q 001157 903 DSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWEKL 959 (1135)
Q Consensus 903 dg~v~iwd~~~~~~~~~l~----~-h~~~i~~l~~s~-d~~~l~s~~~-----------------D~~i~iWd~~~~~~~ 959 (1135)
.+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 55588898776642 2221 1 113467899999 9988776543 367888888765532
Q ss_pred cceeeecCCCCCCCCCCceeEEECCCCcEEEEEE--CCcEEEEeccCCcc---cccCCCCCCCCCeEEEEEccCCCEEEE
Q 001157 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECS---RSWSPKDALPAPISSAIYSCDGLLVYA 1034 (1135)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~~~~~---~~~~~~~~h~~~i~~~~~s~dg~~l~s 1034 (1135)
. ..... .....++|+|||++|.++. .+.|.+|++.+... ..+... .+ ...++++++|.+.++
T Consensus 179 ~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 179 L--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp E--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEE
T ss_pred E--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEE
Confidence 1 11111 2346899999999777753 57899999854221 111111 23 678999999987666
Q ss_pred Eec----------CCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1035 GFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1035 ~~~----------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
... .+.|..+|.. |+.+..+....-. .-..+..+++. ++++.++....+.|..+++....
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~-------~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF-------AGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT-------TTSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC-------ccccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 544 4678888875 7776665422100 01335556552 56666766678899999886433
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.59 E-value=2.1e-05 Score=92.33 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=124.1
Q ss_pred EEEEEcC-CCcEEEEEc-CCCeeEEEecCCCCC-----------eEEEEeccCCC--ccEEEEEEcCCeEEEEeCCCCCc
Q 001157 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEAP-----------VYSVCPHHKES--IQFIFSTAIDGKIKAWLYDYLGS 533 (1135)
Q Consensus 469 ~l~s~~~-d~~i~iwd~-~~~~~~~~l~~h~~~-----------v~~l~~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~ 533 (1135)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.|.++ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666776 889999999 899998877533211 11233322221 12378888999999999999988
Q ss_pred eEEecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCceEEEEeCCCCceeEEeecccCCc----------------
Q 001157 534 RVDYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKRS---------------- 590 (1135)
Q Consensus 534 ~~~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~---------------- 590 (1135)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|.++|+.+..+.......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876544321 1111 111 134 444443110 126789999999999988776432100
Q ss_pred --------------------e-eEEEEeCCCCEEEEEecC----------------CeEEEEECCCCeeeEEEeCCCCCC
Q 001157 591 --------------------L-GVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 591 --------------------v-~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+ ...++.++...++.+..+ +.|..+|..+++.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 135667778888887654 489999999999998887543310
Q ss_pred ----CcCe-EEEe---cCC---CEEEEEeCCCcEEEEECCCcc
Q 001157 634 ----ASPR-LRFN---KEG---SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 634 ----~v~~-~~~s---~~~---~~l~~~~~dg~v~iw~~~~~~ 665 (1135)
.... +.+. .+| ..++.++.+|.+.++|..+|+
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 1111 2222 467 567778899999999999993
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.58 E-value=1.8e-06 Score=87.51 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=126.1
Q ss_pred CeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCe--eEEEEeCCCCcEEEEEeCCccEEEEEcccceEeE
Q 001157 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 918 (1135)
....+.|+. +.+..+.+ +|.|+++|+.+++.+..+ -. ... ..+++.. +++.+..-.++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788873 44444444 789999999999988877 22 333 3356543 4555555578899999999999999
Q ss_pred eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEE
Q 001157 919 KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1135)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~ 998 (1135)
++..- ..-.+++ +|++.|+.+..++.|.++|.++.+......+.. ++
T Consensus 131 ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~g------------ 177 (268)
T 3nok_A 131 TTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------RG------------ 177 (268)
T ss_dssp EEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT------------
T ss_pred EEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------CC------------
Confidence 98753 2223444 578877777778899999999876433211110 00
Q ss_pred EEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccc--cCCCCCCcEEE
Q 001157 999 VYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA--VSSNTAHPLVI 1076 (1135)
Q Consensus 999 vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 1076 (1135)
.. -..++.+.|. +|++.+..-.+..|.+.|..+|+.+..+......+... ........-.+
T Consensus 178 ------~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGI 240 (268)
T 3nok_A 178 ------QP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGI 240 (268)
T ss_dssp ------EE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred ------cc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEE
Confidence 00 1234556665 77766555568899999999999998887543222110 01122455679
Q ss_pred eeCCCCCCEEEEEe
Q 001157 1077 APHPSEPNQIALGM 1090 (1135)
Q Consensus 1077 ~~sp~~~~~l~s~~ 1090 (1135)
+|+|+..+++++|-
T Consensus 241 A~dp~~~rlfVTGK 254 (268)
T 3nok_A 241 AVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCCEEEEET
T ss_pred EEcCCCCEEEEeCC
Confidence 99996666777664
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=7.2e-05 Score=88.15 Aligned_cols=205 Identities=10% Similarity=-0.016 Sum_probs=123.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCC-------eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE
Q 001157 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+..+.+++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|..+|..+|+.+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 3445555554458889999988765331 1111000 012233 233 577788899999999999999877
Q ss_pred ecCCCC----CeE-EEEeccC-CCcc-EEEEEE------cCCeEEEEeCCCCCceEEecCCCCeE---------------
Q 001157 493 FEGHEA----PVY-SVCPHHK-ESIQ-FIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWC--------------- 544 (1135)
Q Consensus 493 l~~h~~----~v~-~l~~~~~-~~~~-~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v--------------- 544 (1135)
...... .+. +..+... .+|+ .++.++ .++.|.-+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 653321 111 1111111 1222 566655 37899999999988776543321000
Q ss_pred --------------------------EEEEEcCCCCEEEEEeeCC----------CC----------CceEEEEeCCCCc
Q 001157 545 --------------------------TMMAYSADGTRLFSCGTSK----------EG----------ESHLVEWNESEGA 578 (1135)
Q Consensus 545 --------------------------~~~~~s~~~~~l~~~~~~~----------~~----------~~~i~~wd~~~~~ 578 (1135)
..++++|+...++.+..+. .+ .+.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 1356777777887665311 11 2689999999999
Q ss_pred eeEEeecccC------C--ceeEEEEe-CCCC---EEEEEecCCeEEEEECCCCeeeEEEeCC
Q 001157 579 IKRTYSGFRK------R--SLGVVQFD-TTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~~~------~--~v~~~~~s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..++.... . ....+... .+|+ .++.++.+|.++++|..+++.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 9988764211 0 11112222 4674 6778899999999999999998777643
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=5.5e-05 Score=89.12 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=121.4
Q ss_pred EEEEcCCCcEEEEEcCCCeeEEEecCCCCCe---------EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCC
Q 001157 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v---------~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1135)
++.++.++.|.-+|..+|+.+.++....... ..+++ . +..++.++.|+.|.-+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~--~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--Y--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--E--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--E--CCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543449999999999988775432210 11122 1 257888899999999999999988765543
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEeeCC--CCCceEEEEeCCCCceeEEeecccC---------------------
Q 001157 541 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 588 (1135)
Q Consensus 541 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1135)
.. .+. ...+.. +|+ .+++++... ..++.|+-+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 454443211 1267899999999998876543210
Q ss_pred -------------------CceeEEEEeCCCCEEEEEec--------------------C----CeEEEEECCCCeeeEE
Q 001157 589 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 589 -------------------~~v~~~~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1135)
..-...+++|+...++.+.. | +.|..+|..+++.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00113567777778887653 2 6899999999999988
Q ss_pred EeCCCCC----CCcCe-EEEe---cCCC---EEEEEeCCCcEEEEECCCcchheee
Q 001157 626 VDADGGL----PASPR-LRFN---KEGS---LLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 626 ~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~ 670 (1135)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+| +.+..
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~ 361 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNA 361 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC-CEecc
Confidence 8653221 01111 2222 4674 7888999999999999999 44433
No 262
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.58 E-value=0.0049 Score=75.95 Aligned_cols=529 Identities=10% Similarity=0.029 Sum_probs=273.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|.++....+|. +. .|+.+ -+..||..+.+.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-lW-igT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LY-MGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-EE-EEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-EE-EEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34689988888885 33 45544 478899876532110 0112235777654 345 4555
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEe-e-cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEE-ecCC----CC
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEI-D-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH----EA 498 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~-~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-l~~h----~~ 498 (1135)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -|..+|..+++.... +... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6665 58888987654221 1000 0 1134688888877776 333 4444 577888777654321 1111 22
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|.++..... +..|..|+. +-+..+|..+.............|.++....+|...+.. . . -+.+++..++.
T Consensus 192 ~i~~i~~d~~--~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDTT--RQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEETT--TTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSC
T ss_pred eeEEEEEECC--CCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCc
Confidence 4777766433 344445553 467788876544322211223468888888888776654 1 2 27888877655
Q ss_pred eeEEee------cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC-----CCCCCCcCeEEEecCCCEE
Q 001157 579 IKRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----DGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l 647 (1135)
...-.. .-....|.++....+|...+ |+..| +.++.... ....+.. ......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 432211 11223588888887776544 44556 55443321 1222210 1112356777777777755
Q ss_pred EEEeCCCcEEEEECCCcch-heeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccc
Q 001157 648 AVTTSDNGIKILANSDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+ |+.+ .+..++..++.. .+..+.....
T Consensus 339 i-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 366 (758)
T 3ott_A 339 F-GGAN-GLIRFTDPAGERHDAIWYRMGDK-------------------------------------------------- 366 (758)
T ss_dssp E-EETT-EEEEESCTTSSCCCCEEECTTCS--------------------------------------------------
T ss_pred E-eeCC-cceeecccccccceeEEeccCCc--------------------------------------------------
Confidence 5 4444 455555443210 0000000000
Q ss_pred cCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCC
Q 001157 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 806 (1135)
. .......|.++.-..+|...+ ++. +-+..|+......
T Consensus 367 -------------------------------~---------~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~ 404 (758)
T 3ott_A 367 -------------------------------T---------YPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQF 404 (758)
T ss_dssp -------------------------------S---------SCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEE
T ss_pred -------------------------------C---------CCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcE
Confidence 0 000224577777777777444 333 3566665432111
Q ss_pred CCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCc-----eEE---EEee
Q 001157 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TMFM 878 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~-----~~~---~~~~ 878 (1135)
..+.... ...... ...|.++...++|++.+....+.+.++|..+. ... ..+.
T Consensus 405 ------------~~~~~~~-------~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 464 (758)
T 3ott_A 405 ------------IHYNIVD-------NTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS 464 (758)
T ss_dssp ------------EEEEEEC-------CC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred ------------EEeecCC-------CcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc
Confidence 0000000 000001 34688888888887666444667888885431 111 1221
Q ss_pred ---C-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC---ccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 879 ---S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 879 ---~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
+ ....|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..+
T Consensus 465 ~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~ 541 (758)
T 3ott_A 465 VHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRI 541 (758)
T ss_dssp GGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEE
T ss_pred cccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEE
Confidence 1 223588999988 677665333344588899887765433211 13457888888888877654 455 8888
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEc-cCCC
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGL 1030 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s-~dg~ 1030 (1135)
+..+++.... . ..+- +...|.++... +|.+. .+.++.+..+|.....+..+... ...+....+. +||.
T Consensus 542 ~~~~~~~~~~---~-~~gl--~~~~i~~i~~~-~g~lW-i~t~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~ 610 (758)
T 3ott_A 542 NPKDESQQSI---S-FGSF--SNNEILSMTCV-KNSIW-VSTTNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKEDC 610 (758)
T ss_dssp CC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEE-EEESSCEEEEETTTCCEEEC--C---CCCCSEEEEETTTTE
T ss_pred ecCCCceEEe---c-ccCC--CccceEEEEEC-CCCEE-EECCCCeEEEcCCCceeEEecCC---CCceeeeEEECCCCc
Confidence 8876543211 1 1111 11456777663 66544 44466688889854444433221 2233444444 5665
Q ss_pred EEEEEecCCcEEEEecC
Q 001157 1031 LVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~~ 1047 (1135)
|+.|+.+|.+. ++.+
T Consensus 611 -l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 611 -VYLGGADGFGI-SHSN 625 (758)
T ss_dssp -EEEECBSEEEE-EEC-
T ss_pred -EEEecCCceEE-EChh
Confidence 55567677544 4443
No 263
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=6e-06 Score=83.75 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=128.4
Q ss_pred eeEEEEecCCCceEEEEEcCCC--cEEEEEcCCCeeEEEecCCCCCeE--EEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 456 VNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~l~~h~~~v~--~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
...+.|+ ++. ++.+.+.+| .|+++|+++|+.+.++.-.. ... .+++ .++ ...+..-.++.+.+||..+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCC-EEEEEEeeCCEEEEEECccC
Confidence 4788998 554 566666665 99999999999998876432 332 3444 332 45555556899999999999
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC----CceeEEEEeCCCCEEEEEe
Q 001157 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~ 607 (1135)
+.+.++..... ...+++|++.|+.+. +.+.|.++|..+.+.+..+....+ ..++.+.|. +|..++..-
T Consensus 118 ~~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 98887775432 234446788777652 467899999999999888776421 134456776 665444344
Q ss_pred cCCeEEEEECCCCeeeEEEeCCCC----------CCCcCeEEEecCCCEEEEEeC
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADGG----------LPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.++.|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999975311 124578999998887777665
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.55 E-value=2.6e-05 Score=91.58 Aligned_cols=274 Identities=9% Similarity=0.069 Sum_probs=164.3
Q ss_pred EEEeecCCCe---EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 351 SMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 351 ~~~fspdg~~---lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.++++|.+.. .+++++.|+.|.-+|..+|+.+- .......... ..-...++ + .++ .+++++
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W-------~~~~~~~~~~---~~~~ssP~----v-~~g-~V~vg~ 173 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVW-------KVENSDIKVG---STLTIAPY----V-VKD-KVIIGS 173 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE-------EEECCCGGGT---CBCCSCCE----E-ETT-EEEECC
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEE-------eecCCCCCcc---ceeecCCE----E-ECC-EEEEEe
Confidence 3566554432 25667889999999999998753 3221110000 00011111 1 144 444444
Q ss_pred ------CCCeEEEEEcCCCCceeeeeEeecC----------------------------------CCCe-eEEEEecCCC
Q 001157 428 ------SKHIVHLYTYNPTGELRQHLEIDAH----------------------------------VGGV-NDIAFAHPNK 466 (1135)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~~h----------------------------------~~~v-~~l~~s~d~~ 466 (1135)
.++.|+-+|..+|+.+-........ ...+ ..+++.++..
T Consensus 174 ~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g 253 (599)
T 1w6s_A 174 SGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN 253 (599)
T ss_dssp BCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT
T ss_pred cccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC
Confidence 3799999999999876432211100 0001 1356666766
Q ss_pred ceEEEEEcCC----------------CcEEEEEcCCCeeEEEecCCCC----------CeEEEEeccCCCc---cEEEEE
Q 001157 467 QLCIVTCGDD----------------KMIKVWDVVAGRKQYTFEGHEA----------PVYSVCPHHKESI---QFIFST 517 (1135)
Q Consensus 467 ~~~l~s~~~d----------------~~i~iwd~~~~~~~~~l~~h~~----------~v~~l~~~~~~~~---~~l~s~ 517 (1135)
+++.+..+ +.|..+|..+|+.+..++.... ++. +.. .+.+| ..++.+
T Consensus 254 --~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~-~~~~G~~~~~v~~~ 329 (599)
T 1w6s_A 254 --LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQ-KDKDGKARKLLTHP 329 (599)
T ss_dssp --EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE-ECTTSCEEEEEEEE
T ss_pred --EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-Eec-cccCCcEEEEEEEE
Confidence 45555544 4899999999999887764221 121 111 11244 467778
Q ss_pred EcCCeEEEEeCCCCCceEEecCC-------------CCeE--------------------------EEEEEcCCCCEEEE
Q 001157 518 AIDGKIKAWLYDYLGSRVDYDAP-------------GNWC--------------------------TMMAYSADGTRLFS 558 (1135)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v--------------------------~~~~~s~~~~~l~~ 558 (1135)
+.+|.+.+.|.++++.+...... ..++ ..++++|+...+++
T Consensus 330 ~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv 409 (599)
T 1w6s_A 330 DRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFM 409 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEE
T ss_pred CCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEE
Confidence 99999999999998877654321 1111 24677888777665
Q ss_pred EeeC------------------------------CC-----CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEE
Q 001157 559 CGTS------------------------------KE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 559 ~~~~------------------------------~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1135)
...+ .. ..+.|..||+.+|+.+.+..... ....-.+...+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~v 487 (599)
T 1w6s_A 410 GINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLV 487 (599)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEE
T ss_pred eccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEE
Confidence 4210 00 35789999999999887775322 11111233456788
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE
Q 001157 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1135)
+.++.|+.++.||.++++.+..++..... ...-+.+..+|++.
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQY 530 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEE
Confidence 88999999999999999999988765442 22446666677643
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.55 E-value=8.4e-06 Score=100.10 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=135.6
Q ss_pred CeeEEEee-cCCCeEEEEEeCCC----cEEEEEcCCc-cccccccceeecccccccccccccccccCCCeeEEEEcCCCC
Q 001157 348 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 348 ~V~~~~fs-pdg~~lla~gs~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 421 (1135)
.+...+|| |||++++.+.+.+| +|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 57889999 99996665555444 4999999988 63321 0 11 1245789999999
Q ss_pred EEEEEeCC-----CeEEEEEcCCCCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCe-eE--E
Q 001157 422 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 491 (1135)
Q Consensus 422 ~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 491 (1135)
.|+....+ ..|.++++.++..... ..+. ........+.|||||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887665 3588888877642211 1222 223346788999999953222222 24478889988752 22 3
Q ss_pred Eec-CCCCCeEEEEeccCCCccEEEEEEcC----CeEEEEeCCCCCceEE-ecCCCC--eEEEEEEcCCCCEEEEEeeCC
Q 001157 492 TFE-GHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 492 ~l~-~h~~~v~~l~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1135)
.+. .......++.|+. + +.+++....+ ..|..+|+.+...... +..+.. .+..+.+ .++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~-g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG-T-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET-T-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee-C-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 343 3445556665432 2 1344444443 3566677664222122 222222 4455555 4566655442 2
Q ss_pred CCCceEEEEeC-------CCCceeEEeecccCCceeEEEE----eCCCC-EEEEEec---CCeEEEEECCCCee
Q 001157 564 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRN-RFLAAGD---EFQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~---dg~i~iwd~~~~~~ 622 (1135)
++...|+++|+ .+++....+.......+..+.+ +++++ .+++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34556788886 3444133332211111222322 34554 3444332 25678888877753
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=1.5e-05 Score=80.16 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=127.2
Q ss_pred CCCeeEEEeecCCCEEEEEe-C--CeEEEEeCCCceEEEEeeCCCCC-eeEEEEeCCCCcEEEEEeCCccEEEEEcccce
Q 001157 840 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 915 (1135)
......+.|+. +.+..+.+ + ..|+.+|+.+++.+....-.... -..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456899986 55444444 3 48999999999999988744332 2345554 34555556678999999999999
Q ss_pred EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC
Q 001157 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1135)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1135)
.+.++..-.. -.+++ +|++.|+.+..++.|.++|.++.+......+.. ++
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~------------------~g--------- 146 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA------------------GG--------- 146 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE------------------TT---------
T ss_pred EEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc------------------CC---------
Confidence 9999875332 23444 567766666668889999999866432211110 00
Q ss_pred cEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcccc--CCCCCCc
Q 001157 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV--SSNTAHP 1073 (1135)
Q Consensus 996 ~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 1073 (1135)
.. -..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... .......
T Consensus 147 ---------~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 147 ---------RP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp ---------EE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred ---------cc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 00 1234455554 777666555678999999999999998875543332211 1122455
Q ss_pred EEEeeCCCCCCEEEEEe
Q 001157 1074 LVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1074 ~~~~~sp~~~~~l~s~~ 1090 (1135)
-.++|+|+..+++++|-
T Consensus 207 NGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEcCCCCEEEEECC
Confidence 67999995555666553
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=2.3e-05 Score=85.61 Aligned_cols=252 Identities=9% Similarity=0.022 Sum_probs=145.7
Q ss_pred ceEEEEEeCCcceeeeecccceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCC------CCCCCCCeeEEE
Q 001157 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE------SKPTEESAACIA 847 (1135)
Q Consensus 774 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~v~~l~ 847 (1135)
...++++.++|+.+.++..++.|..|+...... ..|.............+ ... ...+..++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~p~gi~ 86 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPL-CGRTYDIS 86 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHH-HCCEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhcccc-CCCCceEE
Confidence 456788999998777877788888886532111 01100000000000000 000 23467899
Q ss_pred eec-CCCEEEEEeCCeEEEEeCCCceEEEEeeC-----CCCCeeEEEEeCCCCcEEEEEeC-----------------Cc
Q 001157 848 LSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME-----------------DS 904 (1135)
Q Consensus 848 ~s~-dg~~la~~sdg~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~~lasg~~-----------------dg 904 (1135)
+++ +|+++++...+.|..+|..+++. ..+.. .......+++.+.++++.++-.. ++
T Consensus 87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 87 YNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 998 66555443466688999876543 22221 11346789999823455444322 37
Q ss_pred cEEEEEcccceEeEeecCccCceEEEEEcCCCCeEE-EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEEC
Q 001157 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 905 ~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
.|..||..+++....... ......|+|+|+|++|. +-...+.|..+++..........+.... . ...+++.
T Consensus 166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d 237 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRN 237 (322)
T ss_dssp EEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEEC
T ss_pred eEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEEC
Confidence 799999877764332221 23356799999998554 4466788999998863221111222111 2 5789999
Q ss_pred CCCcEEEEE-E----------CCcEEEEeccCCcccccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 984 NDQTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 984 pdg~~l~~~-~----------d~~i~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
++|++.++. . .+.|..+|..++.+..+....+. ...++++++ .+|++.++....+.|.++++..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999877774 3 35688888876666555433221 235667776 5666666666788899998864
No 268
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.50 E-value=0.0078 Score=74.14 Aligned_cols=572 Identities=12% Similarity=0.089 Sum_probs=298.8
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...|+++.-..+|. +. .|+.+| +..||-..-+... .. .......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~-lW-igT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IW-IGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSC-EE-EEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCC-EE-EEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 35799999999996 33 456565 5566632211100 00 01123568888877766 4555
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec-----CCCCCe
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-----~h~~~v 500 (1135)
|+.+| +..||..+.+... ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. -....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 55665 7889987753211 11112335777654 4554 4444544 6888998776543 331 123457
Q ss_pred EEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-ecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCC
Q 001157 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 501 ~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.++.... +|.+.+ ++.+ -+..++..+...... ... ....|.++...+++..|..++. +-+..+|..
T Consensus 149 ~~i~~d~--~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEEcC--CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 7776643 334444 5544 577787665433221 111 1224888888887776555542 138889987
Q ss_pred CCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC------CCCCcCeEEEecCCCEEEE
Q 001157 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~ 649 (1135)
+++... +.......|.++....+|...+. +. +-+.+++..+++.. .+.... ....|.++....+|.+-+
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 765432 22212225788888877766554 44 45888888765543 222111 112466777777776544
Q ss_pred EeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCccccCC
Q 001157 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1135)
Q Consensus 650 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1135)
|+..| +.++... . ..+.+....
T Consensus 295 GT~~G-l~~~~~~-~--~~~~~~~~~------------------------------------------------------ 316 (758)
T 3ott_A 295 GTDYG-ISLSRYN-S--ALQFIPISQ------------------------------------------------------ 316 (758)
T ss_dssp EESSS-EEEECCC-C---CEEEEHHH------------------------------------------------------
T ss_pred EeCCc-ccccccC-C--ceeEEeccc------------------------------------------------------
Confidence 44555 4443221 1 111000000
Q ss_pred CcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecccceeEEEeecccCCCCC
Q 001157 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 809 (1135)
. ........|.++....+|...+. +.+| +..++.......
T Consensus 317 ----------------------~--------------~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~-- 356 (758)
T 3ott_A 317 ----------------------I--------------TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH-- 356 (758)
T ss_dssp ----------------------H--------------SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC--
T ss_pred ----------------------C--------------CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc--
Confidence 0 00001234677777777774444 4445 333432210000
Q ss_pred CcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEee-C-----CCCC
Q 001157 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-S-----PPPA 883 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~-~-----~~~~ 883 (1135)
....+...... ..+ . ...|.++.-.++|++-+.. ++.+..||..+++...-.. . ....
T Consensus 357 -------~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (758)
T 3ott_A 357 -------DAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNW 420 (758)
T ss_dssp -------CCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSS
T ss_pred -------eeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCce
Confidence 00000000000 001 1 4568899888888866543 6689999998876543221 1 1245
Q ss_pred eeEEEEeCCCCcEEEEEeCCccEEEEEcccc------eEe--Eeec---C-ccCceEEEEEcCCCCeEEEEcCCCcEEEE
Q 001157 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------EVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1135)
Q Consensus 884 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------~~~--~~l~---~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1135)
|.++...+ ++.+. .|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+
T Consensus 421 v~~i~~d~-~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 421 TYYIFEDT-AGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp EEEEEECT-TSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred EEEEEEcC-CCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence 88888877 55544 4666666888886531 111 1111 1 12358999999999877644434458889
Q ss_pred eCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCE
Q 001157 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL 1031 (1135)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~ 1031 (1135)
|..+++... +. ..+ ......+.++....+|.+.+.+ .+.+..||........+....--...|.++... +|.
T Consensus 499 d~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~- 570 (758)
T 3ott_A 499 NPRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS- 570 (758)
T ss_dssp ETTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-
T ss_pred eCCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEEecccCCCccceEEEEEC-CCC-
Confidence 987755221 11 111 0001356788888888877665 456888998444443332111113568888763 564
Q ss_pred EEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1032 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
|..++.+| |..+|..+.+... +. ++. .......+...+| .|..|+.+|- ..++...
T Consensus 571 lWi~t~~G-l~~~~~~~~~~~~-~~----~~~-------~~~~~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 571 IWVSTTNG-LWIIDRKTMDARQ-QN----MTN-------KRFTSLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp EEEEESSC-EEEEETTTCCEEE-C------CC-------CCCSEEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred EEEECCCC-eEEEcCCCceeEE-ec----CCC-------CceeeeEEECCCC-cEEEecCCce-EEEChhh
Confidence 55566555 7788888765432 21 111 1112333333244 5556777764 5566654
No 269
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.48 E-value=1.4e-05 Score=80.90 Aligned_cols=183 Identities=8% Similarity=0.012 Sum_probs=127.9
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE
Q 001157 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1135)
...+.|+. +. +.++.+.++.|+++|+++|+.+.++-.....-..+++ .++ .+.+..-.++.+.+||..+.+.+.
T Consensus 57 tqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGE-RLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSS-CEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEE--eCC-EEEEEEccCCEEEEEECCcCcEEE
Confidence 46888873 33 6778888889999999999998877211112233554 332 555666678999999999999888
Q ss_pred EecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccCC----ceeEEEEeCCCCEEEEEecCCe
Q 001157 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~ 611 (1135)
++...... ..+++|++.|+.+. +.+.|.++|..+.+.+.++.....+ .++.+.|. +|..++..-.+..
T Consensus 131 ti~~~~eG---wGLt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 131 TTRYSGEG---WGLCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEECSSCC---CCEEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEeCCCce---eEEecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 77754332 23346788888763 4778999999999998887654321 34556776 6644433446889
Q ss_pred EEEEECCCCeeeEEEeCC-----------CCCCCcCeEEEecCCCEEEEEeC
Q 001157 612 IKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
|.+.|..+++.+..+... ......+.+|++|+++.|++.+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999999988743 11234578999997766655543
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.47 E-value=5.5e-05 Score=81.72 Aligned_cols=228 Identities=13% Similarity=0.076 Sum_probs=139.9
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCC-cEEEEEcCC
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 486 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 486 (1135)
.....++|+++|+++++-..++.|..||..+. ... .+ ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 35678999999997777778899999998753 221 11 1234688999999998 444443 333 477778778
Q ss_pred CeeEEEec-CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEE-e-------c--CCCCeEEEEEEcCCCCE
Q 001157 487 GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 487 ~~~~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 555 (1135)
++...... ........++..+ ++..+++...++.|.++|...+..... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 77543222 1222334455433 224455555688888888765321111 0 0 111234555 888988
Q ss_pred EEEEeeCCCCCceEEEEeCCC-Cce--eEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCC
Q 001157 556 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999864 332 1222111 134558899999887776678899999975 5543322222222
Q ss_pred CCcCeEEEe---cCCCEEEEEeCC
Q 001157 633 PASPRLRFN---KEGSLLAVTTSD 653 (1135)
Q Consensus 633 ~~v~~~~~s---~~~~~l~~~~~d 653 (1135)
....+++|. +++..|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357889998 888877776654
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=8.4e-05 Score=80.29 Aligned_cols=239 Identities=9% Similarity=-0.006 Sum_probs=143.7
Q ss_pred cceeEEEEecCCCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~l~h~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+.+.+..+........++|+|+|+ ++++...++.|..||...+. .. .+ .....+.++
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~---------------~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HA---------------TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EE---------------ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EE---------------eCCCCceeE
Confidence 4456666776556789999999997 77776678899999876532 11 11 112358899
Q ss_pred EEcCCCCEEEEEeCCC--eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCee-EE
Q 001157 415 VWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QY 491 (1135)
Q Consensus 415 ~~spdg~~la~~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~ 491 (1135)
++.++|+++++..... .|..++..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999766654432 4666777776532 222221 122334555555554 556665688999999776532 21
Q ss_pred Eec---------CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC-CCc--eEEecCCCCeEEEEEEcCCCCEEEEE
Q 001157 492 TFE---------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 492 ~l~---------~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
... +.-...+.+ ++++ +.++++-+..+.|..++++. +.. ...+. .......++++++|++.++.
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEEC
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEe
Confidence 111 111234445 4543 24556666778999999874 211 11111 11234568999999875554
Q ss_pred eeCCCCCceEEEEeCCCCceeE--EeecccCCceeEEEEe---CCCCEEEEEecC
Q 001157 560 GTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDE 609 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 609 (1135)
. +.+.|.++|.. ++... .+.... ....+++|. |+++.|+.++..
T Consensus 230 ~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 230 H----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp B----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECT
T ss_pred C----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCC
Confidence 3 35679999975 65533 222221 257889998 888887776543
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=4.7e-05 Score=76.63 Aligned_cols=184 Identities=13% Similarity=0.082 Sum_probs=127.1
Q ss_pred CeeEEEEecCCCceEEEEEcCC--CcEEEEEcCCCeeEEEecCCCCC-eEEEEeccCCCccEEEEEEcCCeEEEEeCCCC
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~l~~h~~~-v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1135)
-...+.|+. +. ++.+.+.+ ..|+.+|+++|+.+.++.-.... -..+++ .++ ...+..-.++.+.+||..+.
T Consensus 22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~-~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRD-RLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCC-EEEEEEeeCCEEEEEECCcC
Confidence 467899986 43 55666665 49999999999999887533221 133444 332 55555667899999999999
Q ss_pred CceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeecccC----CceeEEEEeCCCCEEEEEe
Q 001157 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~ 607 (1135)
+.+.++...... .. ++++++.|+.+ ++++.|.++|..+.+.+.++..... ..++.+.+. +|+.++..-
T Consensus 96 ~~~~ti~~~~~G-wg--lt~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEG-WA--LTSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCC-CE--EEECSSCEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCc-eE--EeeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 888877754432 23 34677777765 3477899999999999888776432 134556655 555443343
Q ss_pred cCCeEEEEECCCCeeeEEEeCCC-----------CCCCcCeEEEecCCCEEEEEeC
Q 001157 608 DEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
.+..|.+.|..+++.+..+...+ .....+.+|++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67899999999999999987431 1124578999998777776654
No 273
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.43 E-value=0.014 Score=74.05 Aligned_cols=643 Identities=9% Similarity=0.027 Sum_probs=311.7
Q ss_pred eEEEEecCCCCeeEEEeecCC----CeEEEEEe--CCCcEEEEEcCCccccccccceeecccccccccccccccccCCCe
Q 001157 338 TVVRTLNQGSNVMSMDFHPQQ----QTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 338 ~~~~~l~h~~~V~~~~fspdg----~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
..+.++..-++|..++..... ..++++++ .+|.+++..-.-+-.... .+ .+.+ -..+
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~-~~---------------~l~g-v~~i 428 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA-SI---------------DLPG-IKGL 428 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE-EE---------------CCCS-CCEE
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE-ee---------------cCCC-ccEE
Confidence 456677777899999886432 24555543 567787765322111100 00 0111 1334
Q ss_pred eEEEEc---CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEe--cCCCceEEEEEcCCCcEEEEEcCC
Q 001157 412 NRCVWG---PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 412 ~~v~~s---pdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+.+... ....+|+.+..+.+ .|+.+... .+... ...+.......++.. .++ .++=.. ...|++.+...
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l~~~---~ivQVt-~~~Irli~~~~ 501 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNVAHQ---QLIQIT-SASVRLVSQEP 501 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEETTT---EEEEEE-SSCEEEEESSS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEcCCC---eEEEEe-cCEEEEEECCC
Confidence 444432 23568888777766 56665432 22211 111111111122221 222 233333 34577788666
Q ss_pred CeeEEEecCC-CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCce--EEecCCCCeEEEEEEcCC------CCEEE
Q 001157 487 GRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSAD------GTRLF 557 (1135)
Q Consensus 487 ~~~~~~l~~h-~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~------~~~l~ 557 (1135)
+..+..+... ...|...+.+. ..++.++ ++.+.++.++.++.. .... -...|.|+++.|. +++++
T Consensus 502 ~~~~~~w~~p~~~~I~~As~n~----~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 502 KALVSEWKEPQAKNISVASCNS----SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp CCEEEEECCTTCCCCCEEEECS----SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEE
T ss_pred CeEEEEEECCCCCEEEEEEeCC----CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEE
Confidence 6666666543 33566666432 3455554 678888877654321 1222 2457999999764 36777
Q ss_pred EEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEe--CCCCEEEEEecCCeEEEEEC--CCCeeeEEEeCCCCCC
Q 001157 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLP 633 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~ 633 (1135)
.+.. .+++++++++.+.+.+....-.......++.+. ....+|..|-.||.+..+.+ .++++...-...-+..
T Consensus 576 Vg~~---~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~ 652 (1158)
T 3ei3_A 576 IGLW---TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQ 652 (1158)
T ss_dssp EEET---TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSS
T ss_pred EEEC---CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCC
Confidence 7763 477899999988776654333221133333332 23357788889998865554 4555443321111122
Q ss_pred CcCeEEEecCCCEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCC
Q 001157 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 634 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1135)
++.-..+...|..-+.+..+.-..++..+.. -.+..+...
T Consensus 653 pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~--------------------------------------- 692 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLK--------------------------------------- 692 (1158)
T ss_dssp CCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSS---------------------------------------
T ss_pred ceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChH---------------------------------------
Confidence 4444444444443333444555555543221 111111110
Q ss_pred CCCCCCcccCccccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeeccc
Q 001157 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 793 (1135)
++.....|.+ ...++ -++...++.+++..++... .-..+.+.+ ...+..++++|+.+.++++..+
T Consensus 693 ----~v~~~~~F~s---e~~~~--g~v~~~~~~LrI~~i~~~~-~~~~~~ipL-----~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 693 ----EVNYMCPLNS---DGYPD--SLALANNSTLTIGTIDEIQ-KLHIRTVPL-----YESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp ----CCCEEEEECC---SSSTT--EEEEECSSCEEEEEECCSS-SEEEEEEEC-----SSEEEEEEEEGGGTEEEEEEEE
T ss_pred ----HhceEeccCc---ccCCC--cEEEEcCCceEEEEecccC-CeeEEEEeC-----CCCceEEEEcCCCCEEEEEEEe
Confidence 0000111111 01111 1233344568887775432 222333332 3478999999998877776654
Q ss_pred ceeEEEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeec-CCCEEEEEeCCeEEEEeCCCce
Q 001157 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFK 872 (1135)
Q Consensus 794 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~-dg~~la~~sdg~i~iwd~~~~~ 872 (1135)
... ++.. +... .-. ....... ...... ...+..-...+ +..+-.--..+.|++.|..+++
T Consensus 758 ~~~--~~~~-------~~~~------~~~-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~ 818 (1158)
T 3ei3_A 758 IEV--QDTS-------GGTT------ALR-PSASTQA--LSSSVS-SSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFE 818 (1158)
T ss_dssp EEE--ECSS-------SSEE------ESS-CCHHHHC--SEEEEC-CCCCC----------CCCEEEEEEEEEEETTTCC
T ss_pred ccc--cccc-------cccc------hhh-hhhhhhh--hhhccc-ccccccccccCchhhcCCceeeEEEEEEeCCCCe
Confidence 311 1100 0000 000 0000000 000000 00000000000 0000000013568999998888
Q ss_pred EEEEeeCCC-CCeeEEE---EeCCCCcEEEEEe----------CCccEEEEEcccceEeEee-cCccCceEEEEEcCCCC
Q 001157 873 VMTMFMSPP-PAATFLA---FHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLN 937 (1135)
Q Consensus 873 ~~~~~~~~~-~~v~~l~---~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~ 937 (1135)
.+..+.-.. ..+.+++ |..+...+|++|+ ..|.|++|++..+++.... ....+.|++|+-- +|+
T Consensus 819 ~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~ 897 (1158)
T 3ei3_A 819 VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGK 897 (1158)
T ss_dssp EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTE
T ss_pred EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCE
Confidence 877665333 3455554 3332357898887 3488999999865432221 2245778888743 465
Q ss_pred eEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE-CCcEEEEec--cCCcccccCCCC
Q 001157 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS--KLECSRSWSPKD 1014 (1135)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~i~vwd~--~~~~~~~~~~~~ 1014 (1135)
+||..+ .+|++|++...+.+...+ ... ..+..+.....+.++++++ -..|.++.. ....+..+. .+
T Consensus 898 Lla~ig--~~l~vy~l~~~~~L~~~~-~~~-------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D 966 (1158)
T 3ei3_A 898 LLASIN--STVRLYEWTTEKELRTEC-NHY-------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RD 966 (1158)
T ss_dssp EEEEET--TEEEEEEECTTSCEEEEE-EEC-------CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-EC
T ss_pred EEEEcC--CEEEEEECCCCceEEEEe-ecc-------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-ee
Confidence 555544 679999998654332111 111 1123333334567777765 345555443 333332222 23
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEe---eCCCC--------C
Q 001157 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIA---PHPSE--------P 1083 (1135)
Q Consensus 1015 ~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~sp~~--------~ 1083 (1135)
.+...++++.|-.++ .++.+..+|.+.+...+....- ............. .....++++. ..+.. .
T Consensus 967 ~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~-~~~~~~L~~~~~f-hlG~~vt~~~~~sl~~~~~~~~~~~~~ 1043 (1158)
T 3ei3_A 967 FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATT-DEERQHLQEVGLF-HLGEFVNVFCHGSLVMQNLGETSTPTQ 1043 (1158)
T ss_dssp CSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCS-TTGGGBEEEEEEE-ECSSCEEEEEECCSCCC-------CEE
T ss_pred cccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCC-ccccceeeeEEEE-eCCCcEeeEEeeeeecCCCcccccccc
Confidence 346678898887665 5666899999999987652110 0000000000001 1124455554 23311 2
Q ss_pred CEEEEEecCCcEEEEecCC
Q 001157 1084 NQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1084 ~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
..++-|+.+|.|-+.-.-+
T Consensus 1044 ~~il~~T~~GsIg~l~pl~ 1062 (1158)
T 3ei3_A 1044 GSVLFGTVNGMIGLVTSLS 1062 (1158)
T ss_dssp EEEEEEETTSCEEEEEEEC
T ss_pred ceEEEEecCCEEEEEEEcC
Confidence 3578889999998876543
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=2e-05 Score=95.36 Aligned_cols=280 Identities=9% Similarity=0.014 Sum_probs=155.6
Q ss_pred eEEEeec-CCCeEEEEEeCCC-----------cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 350 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 350 ~~~~fsp-dg~~lla~gs~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.++++.| +|+ +++.|+.++ .+.+||..+++..... .....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCC
Confidence 4677888 776 777776432 5788888877543210 0011233344567888
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CC-----CcEEEEEcCCCeeE
Q 001157 418 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRKQ 490 (1135)
Q Consensus 418 pdg~~la~~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 490 (1135)
++|+.+++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++..
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 5689999998764221 11222111 123455667888 777777 44 57999999887644
Q ss_pred EEe----cCCCCCeEEEEeccCCCccEEEEEEcCC---------eEEEEeCCCCCceEEecCC---------CCeEEEEE
Q 001157 491 YTF----EGHEAPVYSVCPHHKESIQFIFSTAIDG---------KIKAWLYDYLGSRVDYDAP---------GNWCTMMA 548 (1135)
Q Consensus 491 ~~l----~~h~~~v~~l~~~~~~~~~~l~s~s~dg---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~~ 548 (1135)
..- ......-....+. .++..++.++.+| .+..||..+.......... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCccccccccccccceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 320 0000000000111 1224455555444 5677887765533222111 11224445
Q ss_pred EcC-CCCEEEEEeeCCC----CCc---eEEEEeCCCCceeEEe--ecccCCceeEEEEeCCCCEEEEEecC---------
Q 001157 549 YSA-DGTRLFSCGTSKE----GES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE--------- 609 (1135)
Q Consensus 549 ~s~-~~~~l~~~~~~~~----~~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 609 (1135)
|.. +++.++.|+.+.. ... .+.+||..+....... .......-.+.+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 544 5666666654211 012 5888898877655433 22222123345677899999998754
Q ss_pred --CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeC
Q 001157 610 --FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 652 (1135)
..+.+||..+.+-...-..........+..+.++|++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999987654322111111112234556789999999885
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.33 E-value=0.0012 Score=72.29 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=151.3
Q ss_pred CCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE
Q 001157 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~ 426 (1135)
+..+|.+..+++ .++++ ..+.|+..++....... +......+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677766754 34443 24567777776543211 11123347899999876666555
Q ss_pred -eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEe
Q 001157 427 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 -~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~ 505 (1135)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 457889999988764322 12222334678999986664 4556666789999997644333333334456788999
Q ss_pred ccCCCccEEEEEEcC-CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 506 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+|.. +.++++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 3555555555 78888888754333322333446789999998888887642 46789999986433222232
Q ss_pred cccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45667773 34444444467788888876776666554
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00084 Score=74.82 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=152.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEE-
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~- 426 (1135)
.-+|.+..+.+ .++++ ....|+..++..+.... +......+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34566666644 34433 34678888876543221 11123457899999866655555
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEec
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~ 506 (1135)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....++++
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 457889999988754221 12222234578899986664 45566667788888876443333333344567889998
Q ss_pred cCCCccEEEEEEcC-CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeec
Q 001157 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
|.. +.++++-... +.|..++++...........-.....++++|++..|+.+-. +.+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 754 3455555455 78888888755444444444456789999998888887643 467899999764333222322
Q ss_pred ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeC
Q 001157 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
... ....+++. .+..+++-...+.|..++..+++.+..+..
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 45667773 344445555778888888777776666653
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.30 E-value=0.0015 Score=70.45 Aligned_cols=231 Identities=10% Similarity=0.005 Sum_probs=144.3
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC---CeeEE-EecCCCC
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQY-TFEGHEA 498 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~l~~h~~ 498 (1135)
|+.+ ....|+..|+.+.+... .+ .....+..++|++++.. ++++-..++.|..+++.. +.... .+...-.
T Consensus 4 ll~~-~~~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFT-NRHEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEE-CBSSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEE-CCCeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 4444 33558888988765433 22 23456789999987664 455666678999999875 12222 2322334
Q ss_pred CeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc
Q 001157 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
....+++.+.+ +.+.++-...+.|.+.+++.................++++|.+..|+.+.. ...+.|...++. |.
T Consensus 78 ~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 78 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-GV 153 (316)
T ss_dssp CCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-SC
T ss_pred CcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-CC
Confidence 55788886543 256666677899999998754444334434457789999998777766542 113678888875 44
Q ss_pred eeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEE
Q 001157 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 657 (1135)
....+....-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33433222222577899999888777765 5679999999754333333322222345677775 355555666678899
Q ss_pred EEECCCc
Q 001157 658 ILANSDG 664 (1135)
Q Consensus 658 iw~~~~~ 664 (1135)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 9987776
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.27 E-value=0.00018 Score=86.85 Aligned_cols=118 Identities=11% Similarity=0.137 Sum_probs=74.9
Q ss_pred EEEEcC-CCCEEEEEeeCCCC-------CceEEEEeCCCCceeE--EeecccCCceeEEEEeCCCCEEEEEe-cCCeEEE
Q 001157 546 MMAYSA-DGTRLFSCGTSKEG-------ESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKF 614 (1135)
Q Consensus 546 ~~~~s~-~~~~l~~~~~~~~~-------~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i 614 (1135)
++++.+ +++.++.++.+.+. ...+.+||..+++... .+.........++++..+++.+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 77777877754321 1268899998876432 33222222334577888999999988 5568999
Q ss_pred EECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEe-CC-----CcEEEEECCCc
Q 001157 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SD-----NGIKILANSDG 664 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~v~iw~~~~~ 664 (1135)
||..+.+-...-..... ..-.+++..++|++++.|+ .+ ..+.+||..++
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99987754433222211 1123556667999999888 34 46788887665
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.27 E-value=0.00058 Score=73.81 Aligned_cols=207 Identities=10% Similarity=-0.012 Sum_probs=131.1
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCC---ceE-EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMT---FKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~---~~~-~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
...+..++|++++..|..++ ++.|..+++.+ +.. ...+...-.....+++++.++.+.++-..++.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 44578899999877777765 68899999876 122 2223323345688999973555556656778999999875
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEcC-C-CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
......+........++++.|.+..|..+.. . +.|...+++.... . ..... . ......+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~-~~~~~-~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y-SLVTE-N-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E-EEECS-S-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-E-EEEEC-C-----CCCceEEEEeccCCEEEE
Confidence 5433333333456789999997665554443 2 6788888764321 1 11111 1 135689999999888887
Q ss_pred EE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc
Q 001157 992 VH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 992 ~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+. .+.|..+|..+.....+............|++. .+.++++-...+.|..++..+|+.+..+
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 54 568999999655444432211112345677774 4555666667788999998888765554
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0012 Score=72.33 Aligned_cols=242 Identities=10% Similarity=-0.013 Sum_probs=152.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+|.+..+++ +|+.+ ....|+..++.+..... .+ .....+..++|++.+.. ++.+-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~---~~-~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTL---LL-NNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEE---EE-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEee-cccceEEEeCCCCeeEE---ee-cCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 345566666643 44444 34458878876643221 22 23345789999987664 44555677899999987665
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCce
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.........+++.+.. +.+.++-...+.|.+.+++.................++++|.+..|+.... ...+.
T Consensus 107 ~~~~~~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCE
T ss_pred ceEEEeCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc--CCCCE
Confidence 443333333455678887543 356677777889999998765544444444457789999998777776542 11377
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEE
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 647 (1135)
|...++.. .....+....-.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.+.
T Consensus 184 I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly 259 (349)
T 3v64_C 184 IEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 259 (349)
T ss_dssp EEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEE
Confidence 88888764 333333222222567899999887777665 5678999998764433333322 234567777 345555
Q ss_pred EEEeCCCcEEEEECCCc
Q 001157 648 AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 648 ~~~~~dg~v~iw~~~~~ 664 (1135)
++-...+.|..++..++
T Consensus 260 ~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 260 WTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EecCCCCeEEEEEccCC
Confidence 55566778888886666
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00063 Score=69.61 Aligned_cols=201 Identities=10% Similarity=0.101 Sum_probs=130.7
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
.+.+..++|+|++.+|+++...++.|...|.. ++.+.+.. +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999988788888888899999987 66554311 122 245778899999987777
Q ss_pred EeCCCeEEEEEcCCCCcee--eeeEee----cCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC---CCeeEEEec--
Q 001157 426 AFSKHIVHLYTYNPTGELR--QHLEID----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFE-- 494 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~--~~~~~~----~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~l~-- 494 (1135)
.-.++.+.++++.....+. ....+. ..+.....++|+|+++. |.++.+.....||.+. .+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999987655322 111111 23456789999999985 4444443344444443 111122221
Q ss_pred -----CCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCC---------CeEEEEEEcCCCCEEEEEe
Q 001157 495 -----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 495 -----~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~ 560 (1135)
.+...+.+++++|.. +.+++.....+.+..+|... +.+..+.... ..-..|+|.++|+..+++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-
Confidence 134567899999874 47777777888899999763 4444443332 267899999999866553
Q ss_pred eCCCCCceEEEEeC
Q 001157 561 TSKEGESHLVEWNE 574 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~ 574 (1135)
. .+.++.+..
T Consensus 242 E----~n~~y~f~~ 251 (255)
T 3qqz_A 242 E----PNRFYRFTP 251 (255)
T ss_dssp T----TTEEEEEEC
T ss_pred C----CceEEEEEe
Confidence 2 445666643
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.23 E-value=0.0025 Score=69.18 Aligned_cols=279 Identities=8% Similarity=-0.013 Sum_probs=150.1
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~ 425 (1135)
...+.+|.|.+++. ++++| ..|.| +...+.|+.-. .... ........+.+|+|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~--------~~~~-------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWE--------PRTL-------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCE--------ECCC-------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCe--------ECCC-------CCCCCCccEEEEEecC-CeEEE-
Confidence 34789999988876 56655 45654 33334343211 1000 0111244688999976 44444
Q ss_pred EeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEE-EecCCCCCeEEEE
Q 001157 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVC 504 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~l~~h~~~v~~l~ 504 (1135)
++.++.|.. ..+.|+..........+...+..+.+.+++. .++.+. ++.|.. ....|+.-. ....+...+..++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 455664433 4444554442211112345678888887776 555554 554432 112343322 2234566788888
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCc-eEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEe
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+.+++ .+++.+...+..+-+|-. +.. ...-......+..+++.++++.++.+. ++.+++.+...|+.-..+
T Consensus 170 ~~~~~--~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 170 RSPSG--EYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp ECTTS--CEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred EcCCC--cEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 87643 566555433333334321 111 111223455788999999988776552 556766642223322222
Q ss_pred ecc---cCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCC-CCCCCcCeEEEecCCCEEEEEeCCCcEEEE
Q 001157 584 SGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 584 ~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 659 (1135)
... ....+..+.+.+++..++++ .+|.| ++..+.++.-..+... .....+.++.|.+++. +++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 211 11247788898877766655 46766 4556666655555422 1123578898976554 5566778877665
Q ss_pred E
Q 001157 660 A 660 (1135)
Q Consensus 660 ~ 660 (1135)
+
T Consensus 319 ~ 319 (327)
T 2xbg_A 319 V 319 (327)
T ss_dssp C
T ss_pred c
Confidence 4
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.23 E-value=0.0013 Score=73.40 Aligned_cols=240 Identities=10% Similarity=-0.003 Sum_probs=151.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeE
Q 001157 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
-.|.+..+. .+|+.+ ....|+..++.+..... .+ .....+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~---~~-~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTL---LL-NNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEE---EE-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCcccc-ceeEee-cCccceeeccCCCcEEE---Ee-cCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 445555553 344444 34568888887654322 22 23345789999987664 4556667789999998766544
Q ss_pred EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 491 ~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..+.........+++.+.. +.++++-...+.|.+.+++.......+.........++++|.+..|+.... ...+.|.
T Consensus 152 ~~~~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEE
T ss_pred EEEeCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEE
Confidence 3333333445677776543 356667677788999888755544444444457789999998887776542 1237788
Q ss_pred EEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEE
Q 001157 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 649 (1135)
.+++.... ...+....-.....++++|++..|+.+. ..+.|..+++........+... ......+++ .++.++++
T Consensus 229 r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 229 ASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp EEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEE
T ss_pred EEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEe
Confidence 88876433 3333222222467899998877777664 6678999998754443333322 234567887 44555566
Q ss_pred EeCCCcEEEEECCCc
Q 001157 650 TTSDNGIKILANSDG 664 (1135)
Q Consensus 650 ~~~dg~v~iw~~~~~ 664 (1135)
-...+.|..++..++
T Consensus 305 d~~~~~V~~~~~~~G 319 (386)
T 3v65_B 305 DWHTKSINSANKFTG 319 (386)
T ss_dssp ETTTTEEEEEETTTC
T ss_pred eCCCCeEEEEECCCC
Confidence 666788888886666
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00016 Score=74.02 Aligned_cols=204 Identities=11% Similarity=0.082 Sum_probs=129.9
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 916 (1135)
...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -......|++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 45799999999877666654 6789999998 888888752 235678899998 777777666778899998865432
Q ss_pred ---eEeec------CccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccc-ccceeeec--CCCCCCCCCCceeEEECC
Q 001157 917 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK-LKSRFIQA--PAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 917 ---~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~-~~~~~~~~--~~~~~~~~~~v~~~~fsp 984 (1135)
+.... .......+|+|+|+++.|.++.+.....+|.+..-.. ........ ..+ ......+..+++.|
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~-~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR-QFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH-TCCSSCCCEEEEET
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc-ccccCCceeEEEcC
Confidence 22221 1234468999999997777766655555665541000 00011111 000 00114578999999
Q ss_pred CCcEEEE-E-ECCcEEEEeccCCcccccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEEecC
Q 001157 985 DQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1135)
Q Consensus 985 dg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~ 1047 (1135)
....+.+ + ..+.+.++|.+++.+..+.-..+. -..-..|+|.++|+ |+..++-..++++.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 8777666 4 356788889877754443332211 13567899999998 4555777777766543
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.22 E-value=0.0035 Score=68.05 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=112.4
Q ss_pred CCeeEEEeecCCCEEEEEeCCeE-EEEeCCCceEEEE-eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE-EEc--ccce
Q 001157 841 ESAACIALSKNDSYVMSASGGKV-SLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDE 915 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sdg~i-~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~ 915 (1135)
..+..+.+.++++.++++.+|.| +-.| .++.-.. .......+..+++.+ ++.+++++. +|.++. +|- .+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCcee
Confidence 45677888888888877766654 3333 2322222 234456789999999 788887664 444444 442 2334
Q ss_pred EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECC
Q 001157 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1135)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1135)
.+. ......+..++++++++.++ ++.+|.+++++.+.++.-. .+... .......+..+++.+++..++++.++
T Consensus 198 ~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g 270 (327)
T 2xbg_A 198 PHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAG 270 (327)
T ss_dssp EEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred ECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCC
Confidence 432 23456788999999987665 4457877777533232110 01111 00001347889999999888888888
Q ss_pred cEEEEec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEec
Q 001157 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1135)
Q Consensus 996 ~i~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~ 1046 (1135)
.+. +.. .++.-........+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 271 ~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 271 ALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp CEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred eEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 773 333 2333222221111245678899986665 555667898777654
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00021 Score=80.81 Aligned_cols=248 Identities=13% Similarity=0.099 Sum_probs=144.8
Q ss_pred CeeEEEeec-CCCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeC-Cc----cEEEEEcccc
Q 001157 842 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 914 (1135)
Q Consensus 842 ~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 914 (1135)
....++++| ++..|.++. .+.|+.+|+.+++..... ........++|++ ++++|.++.. ++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456799998 466676666 588999999876654433 3456688999999 7775555544 22 3444443 33
Q ss_pred eEe--EeecCccCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 915 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 915 ~~~--~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
... ..+.. .....+++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|++
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 22221 23356788999 77777777778899999998755311 1111111 24578999999997777
Q ss_pred E--ECCcEEEEeccCC--cc---cccCCC---CCC----------CCCeEEEEEc--------cCCCEEEEEecCCcEEE
Q 001157 992 V--HESQISVYDSKLE--CS---RSWSPK---DAL----------PAPISSAIYS--------CDGLLVYAGFCDGAIGV 1043 (1135)
Q Consensus 992 ~--~d~~i~vwd~~~~--~~---~~~~~~---~~h----------~~~i~~~~~s--------~dg~~l~s~~~dg~V~v 1043 (1135)
+ ..+.|..++..+. .+ ..+... .+. ..+-..++.. ++|.+.++=...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 5 4678888887432 11 111100 000 1111145553 34566665566788998
Q ss_pred EecCCCceeeccCCC-----cccCc-cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1044 FDAETLRFRCRIGPS-----AYIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1044 wd~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
++ .+|......... .+... ....+.-..+..++++|+++.++++-...+.|+..++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 446443222110 00000 00011123688999998556677776677888888764
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.18 E-value=0.00042 Score=78.34 Aligned_cols=250 Identities=8% Similarity=0.027 Sum_probs=147.1
Q ss_pred CeeEEEeecC--CCEEEEEe-CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC---c-cEEEEEcccc
Q 001157 842 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 914 (1135)
Q Consensus 842 ~v~~l~~s~d--g~~la~~s-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 914 (1135)
....++++|+ +..|.++. .+.|+.+|..+++..... ........++|++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 45555555 588999999887765443 3455689999999 77754443321 1 2333333222
Q ss_pred eE-eEeecCccCceEEEEEcC-CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 915 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 915 ~~-~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
.. ...+. .......+++.| +|.+.++-..++.|+.+|..++..... ...... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 223456788999 677777777788899999987654111 111111 1 123479999999977775
Q ss_pred E--CCcEEEEecc--CCccc---ccCC---CCC---------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEE
Q 001157 993 H--ESQISVYDSK--LECSR---SWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1044 (1135)
Q Consensus 993 ~--d~~i~vwd~~--~~~~~---~~~~---~~~---------h~~~i~~~~~---------s~dg~~l~s~~~dg~V~vw 1044 (1135)
. .+.|..++.. ...+. .+.. ..+ .-..-..+++ .++|.+.++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 4 5688887763 22111 1110 001 0123567999 6777777776777889999
Q ss_pred ecCCCceeeccCCCc-----ccCc-cccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1045 DAETLRFRCRIGPSA-----YIPT-YAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1045 d~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
+. +|.......... +..- ......-..+..++++|.+++++++-...+.|+..+++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 464432221100 0000 00011224578899995577788877778899888764
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0031 Score=70.47 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=148.0
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC----eeEEEecCCC
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~h~ 497 (1135)
+|+.+ ....|+..++.+..... +......+..++|++.+.. ++.+-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888888754332 2234557889999987664 4455556788999997652 2233333344
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567788887643 266677777889999998865554455445556889999998777776532 12367888887643
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
. ...+....-.....+++++++..|+.+. ..+.|..+|+........+...........+++. .+.++.+-...+.|
T Consensus 236 ~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp S-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred c-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 3 3333222212578899999888887765 5678999998765544444432223344567763 34455555667889
Q ss_pred EEEECCCc
Q 001157 657 KILANSDG 664 (1135)
Q Consensus 657 ~iw~~~~~ 664 (1135)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887777
No 289
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.14 E-value=0.00021 Score=87.71 Aligned_cols=200 Identities=6% Similarity=-0.049 Sum_probs=114.2
Q ss_pred ccCC-CeeEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-CceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-
Q 001157 406 DAAI-SVNRCVWG-PDGLMLGVAFS-K----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD- 476 (1135)
Q Consensus 406 ~h~~-~V~~v~~s-pdg~~la~~~~-d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d- 476 (1135)
+|.- .+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4443 67889999 99999987643 2 25999999998 63321 1111 2457899999984 4444433
Q ss_pred ----CcEEEEEcCCCee--EEEec-CCCCCeEEEEeccCCCccEEEEEEc---CCeEEEEeCCCCC-ce--EEec-CCCC
Q 001157 477 ----KMIKVWDVVAGRK--QYTFE-GHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDYD-APGN 542 (1135)
Q Consensus 477 ----~~i~iwd~~~~~~--~~~l~-~h~~~v~~l~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~-~~--~~~~-~~~~ 542 (1135)
..|+++++.++.. ...+. ........+.|+|++ ++|+..+. ...|.++|+.++. .. ..+. ....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688889877642 22332 233446677887765 66665553 3458888887753 22 3332 2333
Q ss_pred eEEEEEEcCCCCEEEEEeeCC-CCCceEEEEeCCCC-ceeE-EeecccCCceeEEEEeCCCCEEE-EEecCCe--EEEEE
Q 001157 543 WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQ--IKFWD 616 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd 616 (1135)
...++.|+ +|+.|+..+... .+...|..+|+.++ .... .+....+..+..+.+ .++.|+ +...++. |++++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEe
Confidence 44444443 366666554321 24567888888753 3222 232222213444444 455554 4556775 45556
Q ss_pred C
Q 001157 617 M 617 (1135)
Q Consensus 617 ~ 617 (1135)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 4
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.12 E-value=0.0014 Score=73.41 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=135.2
Q ss_pred CCCeeEEEeecCCCEEEEEe--CCeEEEEeCCCc----eEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc
Q 001157 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 913 (1135)
...+..++|++.+..|...+ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999877777775 688999998752 222333334456788999974455555556678999999876
Q ss_pred ceEeEeecCccCceEEEEEcCCCCeEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEE
Q 001157 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1135)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1135)
......+........+|++.|.+.+|.... ..+.|...+++...... .+.. + ......+++++++..|+.
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 654444444445678999999766655443 24678888887643211 1111 1 135689999999888888
Q ss_pred EE--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 992 VH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 992 ~~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
++ .+.|..+|+.+.....+...........++++ ..+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 64 56899999866554444322112234456776 334455566677889999988887766553
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.00083 Score=75.95 Aligned_cols=240 Identities=8% Similarity=0.113 Sum_probs=139.6
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-CC----cEEEEE
Q 001157 410 SVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK----MIKVWD 483 (1135)
Q Consensus 410 ~V~~v~~sp-dg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~----~i~iwd 483 (1135)
....++++| ++..|.++...+.|+.+|..++... .+.........++|+++|+. |+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 567899998 4566666655588999998875432 22234456889999999984 444432 22 333344
Q ss_pred cCCCeeE--EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecC-CCCeEEEEEEcCCCCEEEEEe
Q 001157 484 VVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 484 ~~~~~~~--~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 560 (1135)
..+... ..+.. ......++++|. +|.++++-..++.|..++.+.......... .......++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333322 22321 233566778773 336677766788999999876544222222 234577899999999777664
Q ss_pred eCCCCCceEEEEeCCC--Cce--eEEeecc------cC--------Ccee-EEEEe--------CCCCEEEEEecCCeEE
Q 001157 561 TSKEGESHLVEWNESE--GAI--KRTYSGF------RK--------RSLG-VVQFD--------TTRNRFLAAGDEFQIK 613 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~s--------~~~~~l~~~~~dg~i~ 613 (1135)
. ..+.|..++... +.. +..+.+. .+ .... .++.. +++..+++=...+.|+
T Consensus 289 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 V---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp T---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred C---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 3 467788877542 222 2222221 00 0122 45553 3355555545678899
Q ss_pred EEECCCCeeeEEEeC---------CC------CCCCcCeEEEecC-CCEEEEEeCCCcEEEEECC
Q 001157 614 FWDMDNMNMLTTVDA---------DG------GLPASPRLRFNKE-GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~ 662 (1135)
.++. +++....... .+ .......++++++ +.++++-...+.|+.++++
T Consensus 366 ~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 9884 4544433321 00 0224568999984 6555555556778877653
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=0.003 Score=71.25 Aligned_cols=254 Identities=6% Similarity=-0.029 Sum_probs=148.7
Q ss_pred CeeEEEeec-CCCEEEEEe--CCeEEEEeCCCceEEEEeeCC---CCCeeEEEE-------eCCCCcEEEEEeCCc----
Q 001157 842 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 904 (1135)
Q Consensus 842 ~v~~l~~s~-dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~-------sp~~~~~lasg~~dg---- 904 (1135)
....|+|+| ++..|.++. .+.|++.|+.++......... ......++| ++ ++..|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455565555 367999999987776555432 235889999 99 777555555543
Q ss_pred ---cEEEEEccc-ceEe-----EeecCccCceEEEEEcCC-CCeEEEEcCCCcEEEEeCC-------Cccc------c--
Q 001157 905 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 959 (1135)
Q Consensus 905 ---~v~iwd~~~-~~~~-----~~l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~-------~~~~------~-- 959 (1135)
.|.+.+... ++.. ..+... ....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 122211 23457788995 5556677788889999998 4443 0
Q ss_pred --cceeeecCCCCCCCCCCceeEEECCCCcEEEEE--ECCcEEEEeccCC--cc---cccCC---CCCC---------CC
Q 001157 960 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE--CS---RSWSP---KDAL---------PA 1018 (1135)
Q Consensus 960 --~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~i~vwd~~~~--~~---~~~~~---~~~h---------~~ 1018 (1135)
...+.....+ .....++|+|+|++|.++ ....|+.++..+. .+ ..+.. ..++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222111 345799999999976665 4677888666322 11 11110 1111 11
Q ss_pred CeE-EEEEc-------cCCCEEEEEecCCcEEEEecCCCceeeccCCCc------------ccCc-cccCCCCCCcEEEe
Q 001157 1019 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA------------YIPT-YAVSSNTAHPLVIA 1077 (1135)
Q Consensus 1019 ~i~-~~~~s-------~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~ 1077 (1135)
.-. .++.. ++|.+.++=..+.+|+.++ .+|. +.++.... +..- ......-..+..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 44554 4566666666788999998 4564 33332110 0000 01112235678899
Q ss_pred eCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1078 PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1078 ~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
++++++++.++=+..+.|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998447777777778899999987544
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.94 E-value=0.0022 Score=72.50 Aligned_cols=241 Identities=9% Similarity=0.098 Sum_probs=140.2
Q ss_pred CCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC---Cc-EEEE
Q 001157 409 ISVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD---KM-IKVW 482 (1135)
Q Consensus 409 ~~V~~v~~spd--g~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d---~~-i~iw 482 (1135)
.....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|. ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 445555544488999998776533 2333445688999999998 55555422 22 3333
Q ss_pred EcCCCee-EEEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceE-Eec-CCCCeEEEEEEcCCCCEEEEE
Q 001157 483 DVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYD-APGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 483 d~~~~~~-~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~ 559 (1135)
+...+.. ...+. .-.....+++++. +|.+.++-..++.|+.+|..++.... .+. .....-..++|+|++++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 3222211 01111 1233455677663 33666666677889999987655412 221 122234579999999977766
Q ss_pred eeCCCCCceEEEEeCC--CCce--eEEeecc------c--------CCceeEEEE---------eCCCCEEEEEecCCeE
Q 001157 560 GTSKEGESHLVEWNES--EGAI--KRTYSGF------R--------KRSLGVVQF---------DTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~--~~~~--~~~~~~~------~--------~~~v~~~~~---------s~~~~~l~~~~~dg~i 612 (1135)
.. ..+.|+.++.. ++.. ...+.+. . -.....+++ .++++.+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 42 46789887765 3322 1222221 0 012456888 6666666666677889
Q ss_pred EEEECCCCeeeEEEeCCCC----------------CCCcCeEEEe-cCCCEEEEEeCCCcEEEEECC
Q 001157 613 KFWDMDNMNMLTTVDADGG----------------LPASPRLRFN-KEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~dg~v~iw~~~ 662 (1135)
+.++. ++.. .++.+... ......++++ ++|.++++=...+.|+.++++
T Consensus 368 ~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 4543 33332211 1234578888 566666655567778777653
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.88 E-value=0.022 Score=61.19 Aligned_cols=209 Identities=8% Similarity=-0.029 Sum_probs=129.7
Q ss_pred CeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCe
Q 001157 410 SVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
.+..++|.+.+..|..+ ...+.|..++.+++..... .+...-.....+++.+.+.. +.++-...+.|.++++....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCc
Confidence 46789999865555544 5578899999887642211 12222335678999876654 45566667899999976433
Q ss_pred eEEEecCCCCCeEEEEeccCCCccEEEEEE-cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCc
Q 001157 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 489 ~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
....+.........+++.|.. |.++++-. ..+.|...+++...........-.....+++++++..|+.+-. +.+
T Consensus 113 ~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~ 188 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLN 188 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTT
T ss_pred EEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCC
Confidence 222233444567889998754 23444432 3578888887654433333333456789999998888887642 467
Q ss_pred eEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 001157 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.|..+|+.... .+.+..........+++.. +..+++-...+.|..++..+++....+.
T Consensus 189 ~I~~~d~dG~~-~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 189 FIHKSNLDGTN-RQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTSCS-CEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEcCCCCc-eEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 89999986433 2333221122455677653 3344444467889989988777666654
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.88 E-value=9.1e-05 Score=89.41 Aligned_cols=207 Identities=11% Similarity=-0.009 Sum_probs=127.0
Q ss_pred CCeeEEEeecCCCEEEEEe--CCeEEEEeCCC----ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc
Q 001157 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 914 (1135)
..+..++|++.+..|..+. .+.|..+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456799999888887776 57899999875 22212222122345678888635666665556789999998765
Q ss_pred eEeEeecCccCceEEEEEcCCCCeEEEEcC-C-CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
.....+.........|++.|++.+|..+.. . +.|...++...... .++.. + ......++|+|++..|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~~--~----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE--N----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESCS--S----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEeC--C----CCCccEEEEeccCCEEEEE
Confidence 543333333345678899987655554432 2 67887777643211 11111 0 1345789999988777775
Q ss_pred E--CCcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccC
Q 001157 993 H--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1135)
Q Consensus 993 ~--d~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~ 1056 (1135)
. .+.|.++++.+.....+...........+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4 56799999865444433321111222344555443 445555667899999999998887775
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.87 E-value=0.0085 Score=64.39 Aligned_cols=209 Identities=11% Similarity=-0.002 Sum_probs=130.0
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCE-EEEE
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM-LGVA 426 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-la~~ 426 (1135)
.+.+++|.+.+..+..+-...+.|..++...+..... ++...-.....+++.+.+.. .++-
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~d 97 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWTD 97 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEEE
Confidence 5779999997666777777778899999876532110 01112235678999975554 4555
Q ss_pred eCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEE-cCCCcEEEEEcCCCeeEEEe-cCCCCCeEEEE
Q 001157 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVC 504 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~l~ 504 (1135)
...+.|.+++++...... .+.........+++.|.+.. ++.+- +..+.|...++. |.....+ ...-..-+.++
T Consensus 98 ~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 98 SETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp TTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEE
T ss_pred CCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEE
Confidence 567889999987643211 22233456789999987663 33333 235788888865 4333333 22334568899
Q ss_pred eccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee
Q 001157 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+++.. +.+.++-+..+.|..+|++.................+++. +..++.... +.+.|..++..+|+....+.
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEEe
Confidence 98754 2555666677899999987544443343344556677774 334444321 46778888887777655554
Q ss_pred c
Q 001157 585 G 585 (1135)
Q Consensus 585 ~ 585 (1135)
.
T Consensus 247 ~ 247 (318)
T 3sov_A 247 S 247 (318)
T ss_dssp C
T ss_pred C
Confidence 3
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.014 Score=70.78 Aligned_cols=232 Identities=8% Similarity=-0.010 Sum_probs=144.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCC----eeEEEecCCC
Q 001157 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~l~~h~ 497 (1135)
+|+.+ ....|+..++....... +......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~----l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCccee----eecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 34333 44568888887654322 2234456789999986664 4556666788999998642 2233333344
Q ss_pred CCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001157 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....|++.+.+ +.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-. .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 556778887654 256677777899999998865544444445557889999998777776532 12367888888643
Q ss_pred ceeEEeecccCCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcE
Q 001157 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 656 (1135)
....+....-.....|++++.+..|+.+. ..+.|...++........+...........|++.. +.+.++-...+.|
T Consensus 548 -~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp -CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred -ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 33333332222678899998887777765 56789999997665555554333323344566533 2344444456788
Q ss_pred EEEECCCc
Q 001157 657 KILANSDG 664 (1135)
Q Consensus 657 ~iw~~~~~ 664 (1135)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 88887676
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.78 E-value=0.029 Score=68.01 Aligned_cols=213 Identities=8% Similarity=-0.057 Sum_probs=129.3
Q ss_pred CCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCce-eeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC
Q 001157 408 AISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 408 ~~~V~~v~~spdg~~la~~-~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
...+..++|.+.+..|..+ ...+.|+.+++...... .....+.........|++.+.+.. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 4567899999865555544 55678999988763210 011122223456778999988865 45566778899999976
Q ss_pred CCeeEEEecCCCCCeEEEEeccCCCccEEEEEEcC-CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001157 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 486 ~~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
.......+...-.....|++.|.. |.++++-... +.|...+++.......+...-.....|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 444333333344568899998764 2444444333 78888888755444444444467899999998888887642
Q ss_pred CCceEEEEeCCCCceeEEeeccc-CCceeEEEEeCCCCEEEEEe-cCCeEEEEECCCCeeeEEEe
Q 001157 565 GESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 627 (1135)
+...|...++........+.... -.....|++. +.+|+.+. ..+.|...+..+++.+..+.
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 46679999986444333333211 1123345553 34555543 56778777777776655553
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.76 E-value=0.054 Score=56.07 Aligned_cols=258 Identities=10% Similarity=0.103 Sum_probs=152.8
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
..+|.+.|+..+..+....-.. .+.-.+|..+.++.-. ..++.++|+++.+.+....... .|.-=.|-. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A----dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis-~~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECS-SS
T ss_pred CCEEEEEECCCCCCcccccccc----ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecC-CC
Confidence 4468899998866554333222 2355799888777764 7889999999999998887653 344444443 44
Q ss_pred EEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCcc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
.|+..+. ..|+-|++.......+.+..|..-
T Consensus 119 ~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEES-SEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 5665554 489999987654555555444311
Q ss_pred ccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecc-------cceeEE
Q 001157 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 798 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~i 798 (1135)
...+|.....+++.+.++..+- .|.+.+
T Consensus 150 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 150 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 1123444445555554433322 366777
Q ss_pred EeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEE-EeecCC-----CEEEEEe----CCeEEEEeC
Q 001157 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI-ALSKND-----SYVMSAS----GGKVSLFNM 868 (1135)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l-~~s~dg-----~~la~~s----dg~i~iwd~ 868 (1135)
|..+.... ..+.+ | ..+. .+-.+| ++++.+. .+++.|.++
T Consensus 185 YS~er~~s------------------------Q~ieG--h----aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi 234 (365)
T 2xzh_A 185 YSVDRKVS------------------------QPIEG--H----AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV 234 (365)
T ss_dssp EETTTTEE------------------------EEECC--S----EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEEC
T ss_pred Eeeccccc------------------------ceeee--e----eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence 76543211 01111 2 1111 111122 1333332 257899988
Q ss_pred CCc--------eEEEE-eeCC---CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 869 MTF--------KVMTM-FMSP---PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 869 ~~~--------~~~~~-~~~~---~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
... +.... +-.+ .+-.-++..|+ .-.++..-+.-|.|++||++|+.++..-+-..+.|..-+-..+.
T Consensus 235 ~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~ 313 (365)
T 2xzh_A 235 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT 313 (365)
T ss_dssp SSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGG
T ss_pred CCCCCCCCCcccccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCC
Confidence 432 11111 1111 33456788888 67788889999999999999999988776666666655554444
Q ss_pred CeEEEEcCCCcEEEEeCCCcc
Q 001157 937 NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
.=++.....|.|.--.++...
T Consensus 314 ~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 314 AGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEcCCCEEEEEEECccc
Confidence 456666677877766666544
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.008 Score=67.75 Aligned_cols=245 Identities=12% Similarity=0.099 Sum_probs=141.4
Q ss_pred CeeEEEEcC-CCCEEEEE-eCCCeEEEEEcCCCCceeeeeEee-cCCCCeeEEEE-------ecCCCceEEEEEcCCC--
Q 001157 410 SVNRCVWGP-DGLMLGVA-FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAF-------AHPNKQLCIVTCGDDK-- 477 (1135)
Q Consensus 410 ~V~~v~~sp-dg~~la~~-~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~-------s~d~~~~~l~s~~~d~-- 477 (1135)
....|+|+| ++..|.++ ...+.|++.|.+++.... +.... ........++| ++++.. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 45555555 444678888888754332 11110 12235889999 999984 44444332
Q ss_pred -----cEEEEEcCC-CeeE-----EEecCCCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCC-------CCCc------
Q 001157 478 -----MIKVWDVVA-GRKQ-----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-------YLGS------ 533 (1135)
Q Consensus 478 -----~i~iwd~~~-~~~~-----~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~-------~~~~------ 533 (1135)
.|.+.+... |... ..+... .....++++|. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666433 2221 222211 23346677764 33667777788899999987 4432
Q ss_pred -----e-EEec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC--CCCce--eEEeecc------cC--------
Q 001157 534 -----R-VDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--SEGAI--KRTYSGF------RK-------- 588 (1135)
Q Consensus 534 -----~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~--~~~~~~~------~~-------- 588 (1135)
. ..+. ........++|+|+|++|+.+-. +...|+.++. .++.. ...+.+. .+
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345689999999997666542 4677888554 33332 1222221 00
Q ss_pred Ccee-EEEEe-------CCCCEEEEEecCCeEEEEECCCCeeeEEEeCCC----------------------CCCCcCeE
Q 001157 589 RSLG-VVQFD-------TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG----------------------GLPASPRL 638 (1135)
Q Consensus 589 ~~v~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~~ 638 (1135)
.... .++.. +++..+++=.....|+.++ .++. +.++.+.+ .......|
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 0123 45554 4566666656788999998 4553 44443321 11234578
Q ss_pred EEecC-CCEEEEEeCCCcEEEEECCCc
Q 001157 639 RFNKE-GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 639 ~~s~~-~~~l~~~~~dg~v~iw~~~~~ 664 (1135)
+++++ |.+.++=...+.||.++++..
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 88886 666666566788888887655
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.73 E-value=0.061 Score=55.71 Aligned_cols=234 Identities=16% Similarity=0.153 Sum_probs=148.5
Q ss_pred eEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-ceEeEeecC
Q 001157 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKG 922 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 922 (1135)
.+.-.+|..+.+|.-...++.|||+++.+.+..+.- ...|.-=.|-. .+.|+..+. ..|+-|++.. ..+.+.+.-
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT~-taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEES-SEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEcC-CcEEEEcccCCCCCceeeec
Confidence 356678988988888888999999999988888774 35666666664 356665554 4799999975 355566655
Q ss_pred cc----CceEEEEEcCCCCeEEEEcC-------CCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC----c
Q 001157 923 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----T 987 (1135)
Q Consensus 923 h~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg----~ 987 (1135)
|. ..|..-..+++.++++..|- .|.+.+|+.+.+. -+..+||.. .-..|-.+| .
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCc
Confidence 53 45777888999998776542 3678888888643 233445421 112222232 2
Q ss_pred -EEEEEE----CCcEEEEec-cC---C------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCcee
Q 001157 988 -HLLVVH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1135)
Q Consensus 988 -~l~~~~----d~~i~vwd~-~~---~------~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~ 1052 (1135)
.++.+. .+.+.|-++ .. . .+..+.+.+.-.+---+|..|+.-..++.-+.-|.|++||+++|.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 333332 257888888 22 1 11112222222344456888888888888899999999999999998
Q ss_pred eccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1053 CRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
.+-+.. + ..+...+.+.+.+ =++.-...|.|.--.+....
T Consensus 295 ~~nrIS---------~--d~iF~ta~~~~~~-Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 295 YMNRIS---------G--ETIFVTAPHEATA-GIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEECC---------S--SCEEEEEEEGGGT-EEEEEETTCEEEEEEECTTT
T ss_pred EEeccC---------C--CceEEecccCCCC-cEEEEcCCCEEEEEEECccc
Confidence 765411 1 3333334433233 34445588888777776544
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.69 E-value=0.091 Score=56.72 Aligned_cols=260 Identities=9% Similarity=0.079 Sum_probs=157.1
Q ss_pred CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCC
Q 001157 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 644 (1135)
+...|.+.|+.++..+..-.-.. .+.-++|..+.++.-. ..++.+||+++.+.+....... .|.-=.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-
Confidence 34578899998866554333222 2355899888777654 7899999999999998887653 3555555543
Q ss_pred CEEEEEeCCCcEEEEECCCcchheeeccCcccccCCCCCCCCcCCCCccccCCCCCccccccCCCCCCCCCCCCCcccCc
Q 001157 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
+.|+..+ +..|+-|++.......+.+..|..-
T Consensus 117 ~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L----------------------------------------------- 148 (494)
T 1bpo_A 117 NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL----------------------------------------------- 148 (494)
T ss_dssp TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-----------------------------------------------
T ss_pred CeEEEEc-CCeeEEecccCCCCchhheecchhc-----------------------------------------------
Confidence 3555554 4589999997654555555444311
Q ss_pred cccCCCcccccCccccccccccccccccCcccCCCceeEEEcCCCCCCCceEEEEEeCCcceeeeecc-------cceeE
Q 001157 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHK 797 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~ 797 (1135)
....|.....+++.++++..+- .|.+.
T Consensus 149 ----------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 149 ----------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp ----------------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred ----------------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 1123444455555555443322 36777
Q ss_pred EEeecccCCCCCCcccccccceeccCCCCCccccCCCCCCCCCCCeeEEEeecCC-----CEEEEEe----CCeEEEEeC
Q 001157 798 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMSAS----GGKVSLFNM 868 (1135)
Q Consensus 798 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~l~~s~dg-----~~la~~s----dg~i~iwd~ 868 (1135)
+|..+.... . .+.+ | -..- ..+-.+| ++++.+. .+.+.|.++
T Consensus 183 LYS~er~~s----------------------Q--~ieG--h-aa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei 233 (494)
T 1bpo_A 183 LYSVDRKVS----------------------Q--PIEG--H-AASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV 233 (494)
T ss_dssp EEESTTCCE----------------------E--EECC--S-EEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEEC
T ss_pred Eeecccccc----------------------c--hhee--e-eeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEc
Confidence 776643211 0 1112 3 1111 1111122 2334343 278999998
Q ss_pred CCc--------eEEEEee-C---CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCceEEEEEcCCC
Q 001157 869 MTF--------KVMTMFM-S---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1135)
Q Consensus 869 ~~~--------~~~~~~~-~---~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1135)
... +....+. . ..+-..++..|+ .-.++...+.-|.|++||++++.++..-+-..+.|..-+-..+.
T Consensus 234 ~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~ 312 (494)
T 1bpo_A 234 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT 312 (494)
T ss_dssp SCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT
T ss_pred CCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCC
Confidence 542 1111111 1 123456888898 77788899999999999999999988776666667665555555
Q ss_pred CeEEEEcCCCcEEEEeCCCcc
Q 001157 937 NALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
.=++.....|.|.--.++...
T Consensus 313 ~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 313 AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TEEEEEETTCEEEEEEECTTT
T ss_pred CcEEEEccCceEEEEEEcccc
Confidence 556666688877776666544
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.68 E-value=0.00028 Score=85.12 Aligned_cols=228 Identities=8% Similarity=-0.027 Sum_probs=131.6
Q ss_pred EEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc----ceEeEeecCccCceEEE
Q 001157 855 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGL 930 (1135)
Q Consensus 855 la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~l 930 (1135)
|+.+..+.|+..++.+.+....+. ....+..|+|++.++.++++-...+.|+.+++.+ ......+........+|
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred EEecCccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 334445678888887766544333 2345778999983444444444567899999875 22222222222335678
Q ss_pred EEcCCC-CeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEE---CCcEEEEeccCCc
Q 001157 931 AFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH---ESQISVYDSKLEC 1006 (1135)
Q Consensus 931 ~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~---d~~i~vwd~~~~~ 1006 (1135)
++.+.+ +++++-...+.|.+.++....... .+. .+ ......+++.|++.+|+.+. .+.|.++++.+..
T Consensus 459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~--~~----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR--EQ----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp ECCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECC--CS----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred EEEeeCCcEEEEeccCCeEEEEecCCCceEE--EEe--CC----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 887544 555555667889999987643211 111 11 13457899999877666643 2678888875544
Q ss_pred ccccCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCE
Q 001157 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1007 ~~~~~~~~~h~~~i~~~~~s~dg~~l~s~-~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 1085 (1135)
...+.... -..-..|+|+|++..|+.+ +..+.|.++++........+... .....+..+++.. +.+
T Consensus 531 ~~~l~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~---------~~~~~P~glavd~--~~l 597 (699)
T 1n7d_A 531 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---------KRLAHPFSLAVFE--DKV 597 (699)
T ss_dssp CCEESCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS---------SSCSSCCCCEEET--TEE
T ss_pred eeEEEeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC---------CcCCCceEeEEEC--CEE
Confidence 33332111 2345679999986655544 55678999999753322222110 1112333444433 356
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001157 1086 IALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1086 l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+++....+.|..++..+++
T Consensus 598 ywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECSTTTCEEEEETTTEE
T ss_pred EEEeCCCCeEEEEEccCCC
Confidence 6666677899999876665
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.67 E-value=0.0089 Score=63.38 Aligned_cols=194 Identities=12% Similarity=0.142 Sum_probs=121.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCC--Ccc---EEEEEE-c--CCeEEEEeCCC-CCceEEecC
Q 001157 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTA-I--DGKIKAWLYDY-LGSRVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~--~~~---~l~s~s-~--dg~i~~wd~~~-~~~~~~~~~ 539 (1135)
+++.....+-+.++|+ +|+.++.+.. +.++.+..-|.- .|. ++++.. . +++|++|+++. ...+..+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666789999998 9999998864 567777665421 111 223333 3 57899997742 223333311
Q ss_pred ------CC-CeEEEEEE--cCC-CC-EEEEEeeCCCCCceEEEEeCC-------CCceeEEeecccCCceeEEEEeCCCC
Q 001157 540 ------PG-NWCTMMAY--SAD-GT-RLFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 540 ------~~-~~v~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1135)
.. ..+..+|+ +|. ++ ++++.. +++.+..|++. +.+.+++|.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 46667777 775 44 344442 35788888872 346677777654 577888999999
Q ss_pred EEEEEecCCeEEEEECC-----CCeeeEEEeCCCCCCCcCeEEE--ecCCC-EEEEEe-CCCcEEEEECCCcchheeec
Q 001157 602 RFLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~ 671 (1135)
+|+.+-++.-|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .++++.+||.....+.+..+
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999988777777754 3445554432211225677777 45555 566555 57799999986332444444
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.67 E-value=0.0075 Score=63.36 Aligned_cols=202 Identities=11% Similarity=0.063 Sum_probs=125.1
Q ss_pred CeeEEEeecCCCEEEEEe--CCeEEEEeCCCceEEEE-eeC----CCC--CeeEEEE---eCCCCcEEEEEeC-------
Q 001157 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMS----PPP--AATFLAF---HPQDNNIIAIGME------- 902 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~-~~~----~~~--~v~~l~~---sp~~~~~lasg~~------- 902 (1135)
...+++|++....+..++ .++|..||...+..... +.+ ... .+..|.| .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345689988666666666 89999999986654433 222 111 3578999 68 6888876442
Q ss_pred ------CccEEEEEcc---cceEeEeec--Ccc-----------CceEEEEEcCCCCeEEEEcCC-CcEEEEeCCCcccc
Q 001157 903 ------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWEKL 959 (1135)
Q Consensus 903 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~i~~l~~s~d~~~l~s~~~D-~~i~iWd~~~~~~~ 959 (1135)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. ..
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 6789999999 787665432 221 247899999999999988877 77666666543 22
Q ss_pred cceeeecCCCCCCCCCCceeEEECCCCcEEEEE-ECCcEEEEeccCCccc-ccC----CCCCCCCCeEEE-EEccCCCE-
Q 001157 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSR-SWS----PKDALPAPISSA-IYSCDGLL- 1031 (1135)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~i~vwd~~~~~~~-~~~----~~~~h~~~i~~~-~~s~dg~~- 1031 (1135)
....+....... ......++++|||..|++. ..+.+..+|++. ... .+. ...+.......| ..-.+|+.
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~-pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSK-PYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSS-SSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC-CcceeecccccCCcccccCcccccccccCCEEE
Confidence 212222222111 1457799999999988883 488899999852 111 011 100112234443 33357887
Q ss_pred EEEEecCCcEEEEecCC
Q 001157 1032 VYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1032 l~s~~~dg~V~vwd~~~ 1048 (1135)
|++....+.+.+.+-+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 44555566666655443
No 306
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.63 E-value=4.1e-05 Score=61.38 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCc
Q 001157 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1135)
Q Consensus 1 ~~~~~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1135)
|+.++.||..||..||.|.||..||.+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 889999999999999999999999999999999864
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.57 E-value=0.021 Score=60.56 Aligned_cols=196 Identities=13% Similarity=0.194 Sum_probs=119.2
Q ss_pred EEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC----CC---EEEEEe-C--CC
Q 001157 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GL---MLGVAF-S--KH 430 (1135)
Q Consensus 361 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----g~---~la~~~-~--dg 430 (1135)
+++.-...+.+.+||+ +|+.+.. +. .+.++.+..-|+ |+ ++++.. . ++
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~-------------------~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n 99 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHS-------------------YN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN 99 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEE-------------------EC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEE-------------------cc--CCCcccEEEecccccCCceEeEEEEeCCCCCCC
Confidence 3444456788999999 6776653 11 145666665552 33 223333 3 57
Q ss_pred eEEEEEcCC-CCceeeeeEe--e-cCC-CCeeEEEE--ecCCCceEEEEEcCCCcEEEEEcC-------CCeeEEEecCC
Q 001157 431 IVHLYTYNP-TGELRQHLEI--D-AHV-GGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV-------AGRKQYTFEGH 496 (1135)
Q Consensus 431 ~i~iwd~~~-~~~~~~~~~~--~-~h~-~~v~~l~~--s~d~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~l~~h 496 (1135)
+|++|++.. ...+...... . +.. ..+..+++ ++.+..++++....++.+..|++. +++.+++|.-
T Consensus 100 ~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l- 178 (355)
T 3amr_A 100 TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM- 178 (355)
T ss_dssp EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-
Confidence 899998842 1223322110 0 111 56777888 675444468888889999999983 3456777763
Q ss_pred CCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCCC-----CceEEecC--CCCeEEEEEE--cCCCC-EEEEEeeCCCCC
Q 001157 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----GSRVDYDA--PGNWCTMMAY--SADGT-RLFSCGTSKEGE 566 (1135)
Q Consensus 497 ~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----~~~~~~~~--~~~~v~~~~~--s~~~~-~l~~~~~~~~~~ 566 (1135)
.+.+..+...+.. ..|+.+-.+..|..++.+.. ..+..+.. -...+..|++ .++++ +|++.+. ++
T Consensus 179 gsq~EgcvvDd~~--g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ---G~ 253 (355)
T 3amr_A 179 NSQTEGMAADDEY--GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ---GN 253 (355)
T ss_dssp SSCEEEEEEETTT--TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG---GG
T ss_pred CCCcceEEEcCCC--CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC---CC
Confidence 4567777776544 78888888877777775422 22223221 1236788887 56666 6776653 57
Q ss_pred ceEEEEeCC-CCceeEEee
Q 001157 567 SHLVEWNES-EGAIKRTYS 584 (1135)
Q Consensus 567 ~~i~~wd~~-~~~~~~~~~ 584 (1135)
..+.+||.+ +.+.+..|.
T Consensus 254 ~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 254 SSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEESSTTCCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEE
Confidence 789999986 555555554
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.56 E-value=0.036 Score=60.48 Aligned_cols=231 Identities=11% Similarity=0.078 Sum_probs=126.0
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEeCCCce-EEEEee---CCCCCeeEEEEeCC---CCcEEEEEeC---C----ccE
Q 001157 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SSV 906 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~~lasg~~---d----g~v 906 (1135)
.....++|.|||+++++-.+|.|+++|. +++ .+..+. ........|+|+|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999766655899999974 454 222221 12346889999993 3555544432 3 567
Q ss_pred EEEEcccc-------eEe-Eeec---CccCceEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCcccc---
Q 001157 907 QIYNVRVD-------EVK-TKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL--- 959 (1135)
Q Consensus 907 ~iwd~~~~-------~~~-~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~--- 959 (1135)
..|+.... +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 77876643 111 1122 232 3579999999887775432 3444444432 100
Q ss_pred ---cceeeecCCCCCCCCCCceeEEECC-CCcEEEEE--ECC--cEEEEeccCCc---------------ccccCCCCCC
Q 001157 960 ---KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HES--QISVYDSKLEC---------------SRSWSPKDAL 1016 (1135)
Q Consensus 960 ---~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~--~d~--~i~vwd~~~~~---------------~~~~~~~~~h 1016 (1135)
...... .++ .....++|+| +|.++++- .+. .|.+... +.. ..........
T Consensus 185 pf~~~~i~a--~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFPNSPIWS--YGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SSTTCCEEE--ECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCcEEE--Ecc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 000110 111 2457899999 66665552 222 2433322 110 0000000001
Q ss_pred CCCeEEEEE-------ccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEE
Q 001157 1017 PAPISSAIY-------SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALG 1089 (1135)
Q Consensus 1017 ~~~i~~~~~-------s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~ 1089 (1135)
......++| ..+|.++++....+.|...+++....+.... .++ .+....+..+++.| |+.+.++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~-----~~~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFF-----KNVFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EEC-----TTTSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eec-----cCCCCCeeEEEECC-CCcEEEEE
Confidence 345778888 3678777777777788888887532121100 001 12235788999999 66766655
Q ss_pred e
Q 001157 1090 M 1090 (1135)
Q Consensus 1090 ~ 1090 (1135)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 3
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.46 E-value=0.033 Score=60.88 Aligned_cols=231 Identities=14% Similarity=0.116 Sum_probs=121.5
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCCceE--EEEee---CCCCCeeEEEEeCC---CCcEEEEEeCC-----ccEEE
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQ---DNNIIAIGMED-----SSVQI 908 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~~lasg~~d-----g~v~i 908 (1135)
....++|.|||+++++-.+|.|.+++ +++. +..+. ........|+|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999966665589999998 4432 22221 12346789999993 24444444432 67888
Q ss_pred EEcccce-----E-eEeec---CccCceEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCccccc------
Q 001157 909 YNVRVDE-----V-KTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLK------ 960 (1135)
Q Consensus 909 wd~~~~~-----~-~~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~~------ 960 (1135)
|+...+. . +..+. +.......|+|.|||.+.++.+.. +.|.-++.+. +...
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 8876431 1 22233 111123589999999877775432 4455555442 1000
Q ss_pred -----ceeeecCCCCCCCCCCceeEEECC-CCcEEEEE-ECCc--------EEEEeccCCcc-----------cccC-C-
Q 001157 961 -----SRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQ--------ISVYDSKLECS-----------RSWS-P- 1012 (1135)
Q Consensus 961 -----~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~-~d~~--------i~vwd~~~~~~-----------~~~~-~- 1012 (1135)
...+. .++ .....++|+| +|.++++- ..+. |.+... +... ..+. +
T Consensus 189 ~~~~~~~i~a--~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 189 RRGARPEVYS--LGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTSCTTEEE--ECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCccEEE--EcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcCCe
Confidence 00000 011 2357899999 66666652 2222 333222 1100 0000 0
Q ss_pred -CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeecc-CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEe
Q 001157 1013 -KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGM 1090 (1135)
Q Consensus 1013 -~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~ 1090 (1135)
...+......++| .+|.++++....+.|...+++........ ....++ .....+..+++.| |+.+.++..
T Consensus 262 ~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~------~~~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 262 YFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL------SGFGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp EECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE------ESSCCEEEEEECT-TSCEEEEEC
T ss_pred EecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec------ccCCCeeEEEECC-CCcEEEEEe
Confidence 0011234567787 67777766666677887777644311000 000111 1125688999999 666666543
No 310
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=97.44 E-value=0.00028 Score=65.64 Aligned_cols=79 Identities=14% Similarity=0.294 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhHHHHH
Q 001157 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSARNIM 143 (1135)
Q Consensus 71 ~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1135)
.++|+|+.|+|||||..|+..+|..||++.-..+...+.+.+++|..+....++.+++....++. .+.+-..|
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL 130 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 130 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHH
Confidence 49999999999999999999999999998877776778899999999999999988888877765 35556777
Q ss_pred HHHHHh
Q 001157 144 LVELKK 149 (1135)
Q Consensus 144 ~~~l~~ 149 (1135)
+..|++
T Consensus 131 ~~fL~~ 136 (156)
T 2nxp_A 131 KRHLQE 136 (156)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777776
No 311
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=97.41 E-value=0.00014 Score=65.71 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=74.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|+||||+..|+.++|..|+.+.-..+... .+.+++|..+....++.+++....++. ++.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4444 999999999999999999999999999887777666 889999999999999988887766644 3666
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHH
Q 001157 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1135)
-+.|+..|++.- ..-|..+|++.+.
T Consensus 107 ~~lL~~fL~~~~----------------~~~ll~Iin~~i~ 131 (138)
T 2j4b_A 107 FDLLINFLEERN----------------LTYILKILNQHLD 131 (138)
T ss_dssp HHHHHHHHHHTT----------------CHHHHHHHHHHEE
T ss_pred HHHHHHHHHHCC----------------ChHHHHHHHHhee
Confidence 678888887632 2267777776543
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.19 E-value=0.0062 Score=63.98 Aligned_cols=167 Identities=9% Similarity=0.108 Sum_probs=109.7
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEe-ecC----cc--CceEEEEE---cCCCCeEEEEc------
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKG----HQ--NRITGLAF---SPTLNALVSSG------ 943 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~----h~--~~i~~l~~---s~d~~~l~s~~------ 943 (1135)
..---.+++|++.++.++++.-..++|..||...+..... +.+ .. ..+.+|.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 3344567899885566666666899999999986643333 332 11 13689999 68887777543
Q ss_pred -------CCCcEEEEeCC---CcccccceeeecCC-------CCCCCCCCceeEEECCCCcEEEE-EEC-CcEEEEeccC
Q 001157 944 -------ADAQLCMWSID---KWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLV-VHE-SQISVYDSKL 1004 (1135)
Q Consensus 944 -------~D~~i~iWd~~---~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~-~~d-~~i~vwd~~~ 1004 (1135)
.+..|..+|+. +++.....-+.... +.. ......++..++|+..++ +.. +.|...+..+
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 26779999999 76654322221110 001 034679999999998887 556 6777777665
Q ss_pred CcccccCCC---CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCC
Q 001157 1005 ECSRSWSPK---DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1135)
Q Consensus 1005 ~~~~~~~~~---~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~ 1048 (1135)
+.+..+... .......+.|+++|||++|++....|.+..+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 544433211 11123477999999999988887799999999984
No 313
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=97.07 E-value=0.00034 Score=63.91 Aligned_cols=100 Identities=20% Similarity=0.268 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCC-------chhH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++. .++|+||.|+||||+..| .++|..|+.+.-..+...+.+.+++|..+....++.+++....++. ++.+
T Consensus 31 EL~-~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELS-YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 444 499999999999999999 9999999998777666567788899999988888888887766655 3666
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHH
Q 001157 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~ 181 (1135)
-..|+..|++.-. .-.+-|..+|++.+..
T Consensus 109 ~~lL~~fL~~~~~-------------~gg~~ll~Iin~~i~i 137 (148)
T 2j49_A 109 LNLLLYFLNENES-------------IGGSLIISVINQHLDP 137 (148)
T ss_dssp HHHHHHHHHHTGG-------------GTHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHcCc-------------ccHHHHHHHHHHheeE
Confidence 6777777775321 1133677888766543
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.06 E-value=0.049 Score=59.44 Aligned_cols=229 Identities=12% Similarity=0.021 Sum_probs=118.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEee---cCCCCeeEEEEecC---CCceEEEEEcCC-----Cc
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 478 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~s~d---~~~~~l~s~~~d-----~~ 478 (1135)
....++|.|||+++++ ..+|.|.+++ +++ ......+. ........|+|+|| +..+ .++-..+ ..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l-Yv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYV-YAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEE-EEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEE-EEEEecCCCCCccE
Confidence 4679999999995555 5679999998 333 22111111 12346789999998 5532 3333322 57
Q ss_pred EEEEEcCCCe-----eE-EEec---CCCCCeEEEEeccCCCccEEEEEEc-------------CCeEEEEeCCCC-----
Q 001157 479 IKVWDVVAGR-----KQ-YTFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 531 (1135)
Q Consensus 479 i~iwd~~~~~-----~~-~~l~---~h~~~v~~l~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~----- 531 (1135)
|..++...+. .+ ..+. +.......++|.|++ .+.++.+. .|.|..++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876442 11 1233 111223578887754 56665432 256666665430
Q ss_pred -------CceEEecCCCCeEEEEEEcC-CCCEEEEEeeCCCC-----CceEEEEeCCC----------------CceeEE
Q 001157 532 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 582 (1135)
Q Consensus 532 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 582 (1135)
.....+...-.....++|+| +++..++-.. .+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 00011111123467889999 5555444321 111 11244332211 012222
Q ss_pred eecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCee------eEEEeCCCCCCCcCeEEEecCCCEEEEEe
Q 001157 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 651 (1135)
+..+. ....++| .+|..+++.-..+.|...++..... ...+-. ....+..+++.|||.+.++..
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 21111 3456777 4566655555667787777654321 112211 123678999999998776654
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.03 E-value=0.5 Score=50.83 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=119.0
Q ss_pred CCeeEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCC-ceeeeeEeec-----CCCCeeEEEEec--CCCce
Q 001157 409 ISVNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTG-ELRQHLEIDA-----HVGGVNDIAFAH--PNKQL 468 (1135)
Q Consensus 409 ~~V~~v~~spdg~~la~~~------------~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~s~--d~~~~ 468 (1135)
...-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3456777889886666652 68999999998432 12222 3333 234567777766 45431
Q ss_pred EEEEEcC--CCcEEEEEcCCC--e--eEEEecCC-CCCeEEEEeccCCCccEEEEEE-----------------cCCeEE
Q 001157 469 CIVTCGD--DKMIKVWDVVAG--R--KQYTFEGH-EAPVYSVCPHHKESIQFIFSTA-----------------IDGKIK 524 (1135)
Q Consensus 469 ~l~s~~~--d~~i~iwd~~~~--~--~~~~l~~h-~~~v~~l~~~~~~~~~~l~s~s-----------------~dg~i~ 524 (1135)
++++-.. +.+|.+|++..+ . .+.++.+. -...+.+.+.+++ .+.++.. ..|.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333332 568888887653 2 22344432 2456788887654 6666653 124455
Q ss_pred EEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCC-Cce--eEEeecccCCceeEEEEeC-CC
Q 001157 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TR 600 (1135)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~s~-~~ 600 (1135)
.+|. ++.. .+...-...+.++|+||++.++.+.. ..+.|+.|++.. +.. .+.+. .......+++.+ +|
T Consensus 207 r~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 207 YYSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTG 278 (355)
T ss_dssp EECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTC
T ss_pred EEEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCC
Confidence 5544 2222 22222335689999999999887753 356799999863 332 22332 123567799999 59
Q ss_pred CEEEEEecC-CeEEEEECC--CCeeeEEEe
Q 001157 601 NRFLAAGDE-FQIKFWDMD--NMNMLTTVD 627 (1135)
Q Consensus 601 ~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 627 (1135)
++.+++..+ +.|..|+.. .+..+..+.
T Consensus 279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 887766533 344445544 244444444
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.02 E-value=0.087 Score=57.49 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=126.8
Q ss_pred CeeEEEeecCCC-EEEEEeCCeEEEEeCCCceEEEEee-------CCCCCeeEEEEeCC---CCcEEEEEeC-------C
Q 001157 842 SAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME-------D 903 (1135)
Q Consensus 842 ~v~~l~~s~dg~-~la~~sdg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~sp~---~~~~lasg~~-------d 903 (1135)
....++|.|||+ ++++-..|.|++++.. ++....+. ........|+|+|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 6655558999999854 33221111 12245688999993 3444444332 2
Q ss_pred ccEEEEEcccc-------eEe-Eeec-----CccCceEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCcc
Q 001157 904 SSVQIYNVRVD-------EVK-TKLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWE 957 (1135)
Q Consensus 904 g~v~iwd~~~~-------~~~-~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~ 957 (1135)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 132 3579999999777766542 345555554310
Q ss_pred cc----------cceeeecCCCCCCCCCCceeEEECC-CCcEEEEEE--CCcEEEEec-cCCc----------------c
Q 001157 958 KL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVH--ESQISVYDS-KLEC----------------S 1007 (1135)
Q Consensus 958 ~~----------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~--d~~i~vwd~-~~~~----------------~ 1007 (1135)
.. ...... .++ .....++|.| +|.+.++-. ++.=.|.-+ .+.. +
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000000 011 2467899999 666555522 222233222 1110 0
Q ss_pred --------cccCCC---CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCC
Q 001157 1008 --------RSWSPK---DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSN 1069 (1135)
Q Consensus 1008 --------~~~~~~---~~h~~~i~~~~~s~-------dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
..+... ..+......++|.. +|.++++....+.|...+++.++...... ++ ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~-----~~~ 321 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---IL-----TDR 321 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ES-----GGG
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cc-----cCC
Confidence 000000 01223566778753 57777777777888888887654332211 11 122
Q ss_pred CCCcEEEeeCCCCCCEEEEEe-cCCcEEEEec
Q 001157 1070 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEP 1100 (1135)
Q Consensus 1070 ~~~~~~~~~sp~~~~~l~s~~-~Dg~i~lW~~ 1100 (1135)
...+..+++.| |+.+.++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 25788999999 777666433 344 45555
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.98 E-value=0.039 Score=59.61 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=80.3
Q ss_pred EEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCC----CCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccce------
Q 001157 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 915 (1135)
Q Consensus 846 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------ 915 (1135)
.....+|..++++.++.||.-++......+.+... -..|..+..+| +|.+||..+.. .|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~~-~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFNDN-EIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEECSS-EEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEecCC-eEEEEEecCccccCccc
Confidence 44567889999998999999998754444455433 23688999999 89999988654 79998887331
Q ss_pred ------EeEeecC------ccCceEEEEEcCCC---CeEEEEcCCCcEEEEeCCC
Q 001157 916 ------VKTKLKG------HQNRITGLAFSPTL---NALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 916 ------~~~~l~~------h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~ 955 (1135)
..+.+.- ...+|..+.|+|-+ ..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0112211 24679999999965 5799999999999999986
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.96 E-value=0.058 Score=57.53 Aligned_cols=192 Identities=10% Similarity=-0.036 Sum_probs=98.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCc--eeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCC
Q 001157 419 DGLMLGVAFSK-----HIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (1135)
Q Consensus 419 dg~~la~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~ 486 (1135)
+++.++.|+.+ ..+.+||..+.+. ......+.........+. .+++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777777754 4688999888651 222112221111222222 2555 56666543 3688999887
Q ss_pred CeeEE--EecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEE
Q 001157 487 GRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~--~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~ 557 (1135)
.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+..-...-..... ....+. -+++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 211 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYV 211 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEE
Confidence 76433 22211111222222 33677777654 4588888876543332111111 122222 2556666
Q ss_pred EEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCe
Q 001157 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMN 621 (1135)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 621 (1135)
.++.+... ...+.+||+.+.+....-..... .....+..-+++.++.|+.+ ..+.+||..+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 66543322 35699999988765443221111 11111222256666777654 457788887654
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.95 E-value=0.22 Score=56.15 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=62.7
Q ss_pred CeeEEEeecCCCEEEEEeC-CeEEEEeCCCceEE--EEeeC------CCCCeeEEEEeCC---CCcEEEEEeC-------
Q 001157 842 SAACIALSKNDSYVMSASG-GKVSLFNMMTFKVM--TMFMS------PPPAATFLAFHPQ---DNNIIAIGME------- 902 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sd-g~i~iwd~~~~~~~--~~~~~------~~~~v~~l~~sp~---~~~~lasg~~------- 902 (1135)
....++|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 47999987655432 22321 1345679999994 3444444332
Q ss_pred -----CccEEEEEcccc-------eEeE-eecC-ccCceEEEEEcCCCCeEEEEcC
Q 001157 903 -----DSSVQIYNVRVD-------EVKT-KLKG-HQNRITGLAFSPTLNALVSSGA 944 (1135)
Q Consensus 903 -----dg~v~iwd~~~~-------~~~~-~l~~-h~~~i~~l~~s~d~~~l~s~~~ 944 (1135)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655422 1121 1221 1123678999999998887654
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.85 E-value=0.067 Score=57.03 Aligned_cols=232 Identities=12% Similarity=0.030 Sum_probs=116.9
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCCC
Q 001157 419 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1135)
Q Consensus 419 dg~~la~~~-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~ 487 (1135)
++..++.|+ .+ ..+.+||..+.+- .....+....... .+...++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~--~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYV--ASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSC--EEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccc--cEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 3688899887542 2111222111111 22223455 56666654 46899998876
Q ss_pred e---eEE--EecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCE
Q 001157 488 R---KQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 ~---~~~--~l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~ 555 (1135)
+ ... .+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-... +........++. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 6 322 22211122222222 23677777654 3578888876543332 221111222222 25666
Q ss_pred EEEEeeCCC-CCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCC
Q 001157 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.++.+.. ....+.+||+.+.+....-.......-.++ ..-++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceE-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 666654322 135689999988765443211111011112 22256666677653 56899999887644332222
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCC-----CcEEEEECCCc
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~ 664 (1135)
.. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 12222333367777777655 35778888765
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.84 E-value=0.53 Score=51.13 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=120.5
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC---CCE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~ 422 (1135)
-...+.++|.|||+ ++++ ..+|.|.+++ .+++ .. +. ++ . +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35789999999997 5554 5569998887 3443 10 00 00 0 11122346889999998 555
Q ss_pred EEEEeC----C----CeEEEEEcCCCC-ce---eee-eEeec-CCCCeeEEEEecCCCceEEEEEcC-------------
Q 001157 423 LGVAFS----K----HIVHLYTYNPTG-EL---RQH-LEIDA-HVGGVNDIAFAHPNKQLCIVTCGD------------- 475 (1135)
Q Consensus 423 la~~~~----d----g~i~iwd~~~~~-~~---~~~-~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~------------- 475 (1135)
|.++.. + ..|..|+...+. .+ +.. ..+.. .......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 544433 3 567778876541 11 111 11221 111346799999997 4444332
Q ss_pred CCcEEEEEcCCCe----------eEEEecCCCCCeEEEEeccCCCccEEEEEEcCC---eEEEEeCCC------------
Q 001157 476 DKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDY------------ 530 (1135)
Q Consensus 476 d~~i~iwd~~~~~----------~~~~l~~h~~~v~~l~~~~~~~~~~l~s~s~dg---~i~~wd~~~------------ 530 (1135)
.+.|.-++.. |+ .+.. .++.. ...++|++.. +.++++-...+ .|.+..-..
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~-g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHRN-PQGIDWHRAS-GVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG 243 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCSC-CCEEEECTTT-CCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccCC-cceEEEeCCC-CCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence 1345555533 32 2222 23433 4578887732 24444433222 133221100
Q ss_pred ----CCceEEecCCCCeEEEEEEc-------CCCCEEEEEeeCCCCCceEEEEeCCCC-cee--EEeecccCCceeEEEE
Q 001157 531 ----LGSRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVVQF 596 (1135)
Q Consensus 531 ----~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~~~ 596 (1135)
......+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..+++
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~ 319 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI 319 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence 01122221223467788884 4665555542 3566888887643 322 2232211236788999
Q ss_pred eCCCCEEEEEe
Q 001157 597 DTTRNRFLAAG 607 (1135)
Q Consensus 597 s~~~~~l~~~~ 607 (1135)
.|||..+++..
T Consensus 320 ~pDG~lyv~~~ 330 (354)
T 3a9g_A 320 DDDGGILISTS 330 (354)
T ss_dssp CTTSCEEEEEC
T ss_pred CCCCcEEEEEe
Confidence 99997666653
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.82 E-value=0.39 Score=52.23 Aligned_cols=236 Identities=10% Similarity=0.007 Sum_probs=119.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----ecCCCCeeEEEEecC---CCceEEEEEcC------C
Q 001157 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHVGGVNDIAFAHP---NKQLCIVTCGD------D 476 (1135)
Q Consensus 410 ~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~s~d---~~~~~l~s~~~------d 476 (1135)
....|+|.|||+.|.++...|.|++++... ........+ .........++|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999444556789999998543 211111111 112345789999996 55333332221 2
Q ss_pred CcEEEEEcCCC--e--eEEE-ecC------CCCCeEEEEeccCCCccEEEEEEc-------------CCeEEEEeCCCCC
Q 001157 477 KMIKVWDVVAG--R--KQYT-FEG------HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYLG 532 (1135)
Q Consensus 477 ~~i~iwd~~~~--~--~~~~-l~~------h~~~v~~l~~~~~~~~~~l~s~s~-------------dg~i~~wd~~~~~ 532 (1135)
..|..|++..+ . .... +.. ....-..|+|.|++ .+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666533 1 1111 111 11123568887754 55555433 2466666665320
Q ss_pred ------------ceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeC--------CCC---------------
Q 001157 533 ------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--------SEG--------------- 577 (1135)
Q Consensus 533 ------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--------~~~--------------- 577 (1135)
....+.........++|+|+...|.++-...++...|.+... ..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111111122357889999944444444322111122322110 000
Q ss_pred ------ceeEEeecccCCceeEEEEeC-------CCCEEEEEecCCeEEEEECCCCeeeEEEeCC-CCCCCcCeEEEecC
Q 001157 578 ------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKE 643 (1135)
Q Consensus 578 ------~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 643 (1135)
.++..+..+. ....+.|.. +|.++++.-..+.|...++..++.......- .....+..+++.||
T Consensus 256 ~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111122111 355677753 4666666557788888888766544332211 11235788999999
Q ss_pred CCEEEEE
Q 001157 644 GSLLAVT 650 (1135)
Q Consensus 644 ~~~l~~~ 650 (1135)
|.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866643
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.81 E-value=0.1 Score=55.74 Aligned_cols=230 Identities=7% Similarity=-0.034 Sum_probs=116.5
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC----CcEEEEEcCCCeeEEE--
Q 001157 421 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYT-- 492 (1135)
Q Consensus 421 ~~la~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~-- 492 (1135)
..++.|+. ...+.+||..+++-. ....+.........+. -++. +++.|+.+ ..+.++|+.+++-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 356888998875422 1112221111222222 3555 56666654 5788999888764332
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCC
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..... ...++. -+++.++.++.+..
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2211111222222 23677777765 4588888876543332111111 112222 35666666654332
Q ss_pred C-----CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCCCCCCC
Q 001157 565 G-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 565 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
. ...+.+||+.+.+....-.......-.+++.. +++.++.|+.+ ..+.+||+.+.+-...-..... .
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 238 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--G 238 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--B
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--c
Confidence 2 45689999988765433221111011122222 56666666643 4688999988753332111111 1
Q ss_pred cCeEEEecCCCEEEEEeCC-----CcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~ 664 (1135)
....+..-++.+++.|+.+ ..+.+||..+.
T Consensus 239 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1112222367778888743 56888888765
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.81 E-value=0.79 Score=49.61 Aligned_cols=260 Identities=7% Similarity=0.133 Sum_probs=159.5
Q ss_pred CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE
Q 001157 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448 (1135)
Q Consensus 369 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~dg~i~iwd~~~~~~~~~~~~ 448 (1135)
.+|.|-|+.++....+++. .--+.-.+|..+.+|.-. ..++.|+|+++.+.++ .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi----------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk---s 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI----------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---A 101 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC----------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---E
T ss_pred CeEEEEECCCCCcceeccc----------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---c
Confidence 3788888887665432111 233556788888777765 6789999999977655 2
Q ss_pred eecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEEecCCC----CCeEEEEeccCCCccEEEEEE-----
Q 001157 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHE----APVYSVCPHHKESIQFIFSTA----- 518 (1135)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~h~----~~v~~l~~~~~~~~~~l~s~s----- 518 (1135)
+. ....|.-=.|-.+.. |+-.+ +..|+-|++.. ..+++.|..|. ..|..... +.+.++++..+
T Consensus 102 ~~-~~e~VvfWkWis~~~---l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~--d~~~kW~~l~GI~~~~ 174 (494)
T 1bpo_A 102 HT-MTDDVTFWKWISLNT---VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT--DAKQKWLLLTGISAQQ 174 (494)
T ss_dssp EE-CSSCCCEEEEEETTE---EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEE--CTTSSEEEEEEEEEET
T ss_pred ee-cCCCceEEEecCCCe---EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEE--CCCCCeEEEEeecccC
Confidence 22 244677777776554 44443 56899999864 35566665543 33333344 44557766543
Q ss_pred --cCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCC--CEEEEEeeCCCCCceEEEEeCCCC---c------eeEEe-e
Q 001157 519 --IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEG---A------IKRTY-S 584 (1135)
Q Consensus 519 --~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~---~------~~~~~-~ 584 (1135)
-.|.+.+|..+.. ....+.+|......+.+..+. ..+++-.......+.+++.++... . .+..+ .
T Consensus 175 ~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp 253 (494)
T 1bpo_A 175 NRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (494)
T ss_dssp TEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred CcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence 3477899987643 334555665544444332221 123322222223478999988532 1 11111 1
Q ss_pred c-ccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCCcEEEEECCC
Q 001157 585 G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 585 ~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 663 (1135)
. ......-++..++.-..++..+.-|.|++||+.++.++..-..... .|...+......-++.....|.|.-..++.
T Consensus 254 pe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred cccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 1 1122345688899888999999999999999999999988775533 555555555555566667888887777765
Q ss_pred c
Q 001157 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 332 ~ 332 (494)
T 1bpo_A 332 E 332 (494)
T ss_dssp T
T ss_pred c
Confidence 5
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.80 E-value=0.11 Score=55.34 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=115.4
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-----CcEEEEEcCCCee
Q 001157 419 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRK 489 (1135)
Q Consensus 419 dg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~ 489 (1135)
++..++.|+.+ ..+..||..+.+ ......+......- +++. -++. +++.|+.+ ..+.+||..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRA-GMVY-MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-EEEE-ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccc-eEEE-ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34455555543 357888888754 22211222111111 2222 2455 56666644 3688999887764
Q ss_pred EEE--ecCCCCCeEEEEeccCCCccEEEEEEcCC-----eEEEEeCCCCCceEEecCCC--CeEEEEEEcCCCCEEEEEe
Q 001157 490 QYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 490 ~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~ 560 (1135)
... +......-..+.+ ++.+++.|+.++ .+.+||..+.+-...-.... ....++. -+++.++.++
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 163 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGG 163 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeC
Confidence 332 1111111222222 236777777553 47778877654333211111 1112222 2556666665
Q ss_pred eCCCC---CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCCCCC
Q 001157 561 TSKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 561 ~~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
.+... ...+.+||+.+.+....-.......-.+++ .-++..++.|+.+ ..+.+||..+.+-...-.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 43322 345889999887654332111110111222 2256667777654 4689999988754433222111
Q ss_pred CCcCeEEEecCCCEEEEEeCCC-----cEEEEECCCc
Q 001157 633 PASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~s~~~~~l~~~~~dg-----~v~iw~~~~~ 664 (1135)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222334677777777553 4888888765
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.77 E-value=0.23 Score=52.93 Aligned_cols=231 Identities=7% Similarity=-0.074 Sum_probs=115.9
Q ss_pred eEEEEEeCC--CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEeCC----CeEE
Q 001157 360 TILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVH 433 (1135)
Q Consensus 360 ~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~~d----g~i~ 433 (1135)
.+++.|+.+ ..+.+||..+++-.... . +......-.++. -+++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~------------~-----~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIR------------C-----PFEKRRDAACVF--WDNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECC------------C-----CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCC------------C-----CCcccceeEEEE--ECCEEEEEeCCCCCCcceEE
Confidence 467777653 57888888776532110 0 001111122222 367777787754 6788
Q ss_pred EEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC------CcEEEEEcCCCeeEEE--ecCCCCCeEEEEe
Q 001157 434 LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQYT--FEGHEAPVYSVCP 505 (1135)
Q Consensus 434 iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~~~~--l~~h~~~v~~l~~ 505 (1135)
+||..+++- .....+.........+. -+++ +++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 74 ~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSW-YSKLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEE-EEEECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeE-EECCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 999887642 22212221111122222 2555 56666654 4688999888764332 1111111122222
Q ss_pred ccCCCccEEEEEEc---------CCeEEEEeCCCCCceEEecCCCC--eEEEEEEcCCCCEEEEEeeCCC-CCceEEEEe
Q 001157 506 HHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE-GESHLVEWN 573 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd 573 (1135)
++.+++.|+. -..+.+||..+..-...-..... ....+.+ +++.++.++.+.. ....+.+||
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd 222 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYD 222 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEE
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEee
Confidence 2366666654 34578888876543332111111 1122222 5566666654221 124588999
Q ss_pred CCCCceeEEeecccCC-ceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCee
Q 001157 574 ESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1135)
+.+.+....-...... ...++.+ ++..++.|+.+ ..+.+||..+.+-
T Consensus 223 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 223 IKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 9887644321111110 1222222 56677777743 5688999887653
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.76 E-value=0.44 Score=51.01 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=121.5
Q ss_pred CCeeEEEeecCCCEEEEEe-CCeEEEEeCCCceEE--EEee----CCCCCeeEEEEeCC---CCcEEEEEe--CCccEEE
Q 001157 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TMFM----SPPPAATFLAFHPQ---DNNIIAIGM--EDSSVQI 908 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~--~~~~----~~~~~v~~l~~sp~---~~~~lasg~--~dg~v~i 908 (1135)
...+.++|.|||+++++-. .|.|++++..+++.. ..+. ........|+|+|+ ++.+.++-+ .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4578999999999888887 899999987665542 2221 12345789999993 244444322 3456666
Q ss_pred EEcccc----------eEe-Eeec---CccCceEEEEEcCCCCeEEEEcC-------------CCcEEEEeCCCccccc-
Q 001157 909 YNVRVD----------EVK-TKLK---GHQNRITGLAFSPTLNALVSSGA-------------DAQLCMWSIDKWEKLK- 960 (1135)
Q Consensus 909 wd~~~~----------~~~-~~l~---~h~~~i~~l~~s~d~~~l~s~~~-------------D~~i~iWd~~~~~~~~- 960 (1135)
|.+..+ +.+ ..+. .|. ...|+|.|||.+.++.+. -|.|.-.+.+.. ...
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence 665541 111 1222 232 356999999998887653 233433343321 000
Q ss_pred -----ceeeecCCCCCCCCCCceeEEECCCCcEEEE--EECCcEEEEec-cCCcccccCCC----------------CCC
Q 001157 961 -----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQISVYDS-KLECSRSWSPK----------------DAL 1016 (1135)
Q Consensus 961 -----~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~i~vwd~-~~~~~~~~~~~----------------~~h 1016 (1135)
..+.. .|+ .....++|+|+|.+.++ +.++.-.|.-+ .+.. .-|... ..+
T Consensus 189 nPf~~~~i~a--~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~n-yGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 189 NPFPGSPVYS--YGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDN-YGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp CSSTTCCEEE--BCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCB-CCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCCCCCeEEe--eCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCE-ecCCcccCCCCCccccCCcEecCCC
Confidence 00010 122 34578999999887776 33433333333 1111 000000 001
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1017 ~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
......|+|. +|.++...-..+.|....++.+..... .. ..+.+...++..++..| |+.++++
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e-----~~l~~~~gR~~dv~~~p-DG~lyv~ 324 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQ-----AFLEGEYGRLRTVAPAG-GDKLWLV 324 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CE-----EESTTTSSCEEEEEEEE-TTEEEEE
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecc--eE-----EeecCCCCCccEEEECC-CCcEEEE
Confidence 1244566765 466666655566666666654432111 01 11123335677888888 5555444
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.61 E-value=0.13 Score=64.14 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=138.7
Q ss_pred EEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-ceEeEeecCc
Q 001157 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 923 (1135)
Q Consensus 845 ~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 923 (1135)
+.-.+|..+.+|.-...++.|||+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 45677888888877788899999998877766653 34565556653 34555554 44799999974 3444455544
Q ss_pred ----cCceEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 924 ----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 924 ----~~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
...|..-..+++.++++..| -.|.+.+|+++.+. -+...||........--...+..+.++.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhhhheeccCCCCCCceEEEEE
Confidence 45677788899999977554 34788889887643 22334443110000000001112233323
Q ss_pred E----CCcEEEEec-cC---C------cccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 993 H----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 993 ~----d~~i~vwd~-~~---~------~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
. .+.+.|-++ .. . .+..+.+...-..--.+|..|+.-..+...+.-|.|+++|+.||.++.+-+..
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 2 267888887 22 1 11111221112233346777887788888889999999999999988764411
Q ss_pred cccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCCCc
Q 001157 1059 AYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~ 1104 (1135)
+ ..+...+.....+.++. ....|.|.--.+....
T Consensus 300 ---------~--~~iF~~~~~~~~~g~~~-vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 300 ---------G--ETIFVTAPHEATAGIIG-VNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ---------C--CceEEeccCCCCCceEE-EcCCceEEEEEEccch
Confidence 2 22333333332333443 4477777666665433
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.55 E-value=1 Score=50.32 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=69.4
Q ss_pred eEEEeecCCCEEEEEe--CCeEEEEeCCCc------eE-------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 844 ACIALSKNDSYVMSAS--GGKVSLFNMMTF------KV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 844 ~~l~~s~dg~~la~~s--dg~i~iwd~~~~------~~-------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
-.+.++|||+++++++ +.++.++|+... +. ..... -.-.....+|.+ +|....+..-|..|.-
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQVVK 403 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceEEE
Confidence 3689999999999998 789999998742 11 22222 233567899999 7776777779999999
Q ss_pred EEcccc----------eEeEeecCccCceEEEEE------cCCCCeEEEEc
Q 001157 909 YNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG 943 (1135)
Q Consensus 909 wd~~~~----------~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~ 943 (1135)
|++... ..+.++.-|-.+ -.+.- .+||++|++..
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 999864 456666666443 23333 57899999874
No 330
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.37 E-value=0.18 Score=53.63 Aligned_cols=191 Identities=7% Similarity=-0.011 Sum_probs=94.7
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCC-----cEEEEEcCCCe
Q 001157 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGR 488 (1135)
Q Consensus 419 dg~~la~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~-----~i~iwd~~~~~ 488 (1135)
+++.++.|+.+ ..+.+||..+.+- .....+.........+. -+++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQW-TSVANMRDRRSTLGAAV--LNGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE--ETTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCce-eeCCCCCccccceEEEE--ECCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777654 3588899887542 21112221111122222 2454 555665443 57788988776
Q ss_pred eEEE--ecCCCCCeEEEEeccCCCccEEEEEEcC-------CeEEEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEE
Q 001157 489 KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 489 ~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~ 557 (1135)
-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..-...-... ......+. -+++.++
T Consensus 136 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 209 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYA 209 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred EeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEE
Confidence 4332 1111111122222 23666666643 34788888765433321111 11122222 2566666
Q ss_pred EEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCe
Q 001157 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMN 621 (1135)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 621 (1135)
.++.+... ...+.+||+.+.+....-..... .....+..-++..++.|+.++ .+.+||+.+.+
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 66543221 34699999988765433211111 111111223566667776543 47888887764
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.28 E-value=0.67 Score=49.44 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=92.6
Q ss_pred CCeEEEEeCCCceEEE-EeeCCCCCeeEEEEeCCCCcEEEEEeC-----C------ccEEEEEcccceEeE--eecCccC
Q 001157 860 GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGME-----D------SSVQIYNVRVDEVKT--KLKGHQN 925 (1135)
Q Consensus 860 dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~lasg~~-----d------g~v~iwd~~~~~~~~--~l~~h~~ 925 (1135)
...+.+||..+++=.. .+..+.......+... ++.+++.|+. . ..+..||..+++-.. .+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998876432 2222223333333444 6778888873 1 137888988775322 2221111
Q ss_pred ceEEEEEcCCCCeEEEEcCC--------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE-E-C-
Q 001157 926 RITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H-E- 994 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D--------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~-d- 994 (1135)
.-..+.+ ++++++.||.+ ..+.+||..+.+-.. +...... ... ..+ ..-+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~---r~~-~~~-~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYV---VYG-HTV-LSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCCSSC---CBS-CEE-EEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCCCCc---ccc-eeE-EEECCEEEEEeCCCCC
Confidence 1112222 66777777732 458899988754211 1111110 011 122 22456666664 3 2
Q ss_pred ----CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEecCCCcee
Q 001157 995 ----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFR 1052 (1135)
Q Consensus 995 ----~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg-----~V~vwd~~~~~~~ 1052 (1135)
..+.+||+....-....... .......+..-++++++.|+.++ .+.+||..+.+-.
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 46899998443322222111 11111122233778888887655 4889999877543
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.25 E-value=1.1 Score=47.85 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=113.4
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEee----cCccCceEEEEEcCC----CCeEEEE--cCCCc
Q 001157 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKL----KGHQNRITGLAFSPT----LNALVSS--GADAQ 947 (1135)
Q Consensus 880 ~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l----~~h~~~i~~l~~s~d----~~~l~s~--~~D~~ 947 (1135)
.-.....|+|.| ++.++++--..|.|++++..+++. +..+ .........|+|+|| +.+.++- ..++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 888777665589999998765543 2222 123456789999996 4444432 24455
Q ss_pred EEEEeCCCcc----cc-c-ceeeecCCCCCCCCCCceeEEECCCCcEEEEEEC--------------CcEEEEeccCCc-
Q 001157 948 LCMWSIDKWE----KL-K-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--------------SQISVYDSKLEC- 1006 (1135)
Q Consensus 948 i~iWd~~~~~----~~-~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--------------~~i~vwd~~~~~- 1006 (1135)
|.-|.+..+. .. . ..++...... .......++|.|||.+.++..| +.|.-.+..+..
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~--~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKG--VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCC--SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCC--CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 6667665521 11 1 1122222110 0123568999999987777322 344444444331
Q ss_pred -------ccccCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEecCCCceee----cc--CCCc-ccCccccCCCCC
Q 001157 1007 -------SRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRC----RI--GPSA-YIPTYAVSSNTA 1071 (1135)
Q Consensus 1007 -------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~-~~dg~V~vwd~~~~~~~~----~~--~~~~-~~~~~~~~~~~~ 1071 (1135)
...+. .+| .....++|+|+|++.++= +.|+.=.|--+..|.... .- .... ..|...+..+..
T Consensus 187 ~~nPf~~~~i~a--~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYS--YGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp TTCSSTTCCEEE--BCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCCCCCCCeEEe--eCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11111 233 245579999998866653 233333333333333210 00 0000 112222222224
Q ss_pred CcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1072 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1072 ~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
.+..++|.. +.+++..-..+.|....+..
T Consensus 264 ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 264 SPSGIAYAE--GSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp CEEEEEEET--TEEEEEESTTCSEEEEEEET
T ss_pred CCcceEEEc--CceeeccccCCEEEEEEecC
Confidence 677888874 56666666666666666654
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.24 E-value=0.5 Score=50.27 Aligned_cols=233 Identities=13% Similarity=0.107 Sum_probs=118.7
Q ss_pred eecCCCEEEEEe-C----CeEEEEeCCCceEEEEeeCCCCCe-eEEEEeCCCCcEEEEEeC----C-----ccEEEEEcc
Q 001157 848 LSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNVR 912 (1135)
Q Consensus 848 ~s~dg~~la~~s-d----g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~ 912 (1135)
..-++.+++.|+ + ..+.+||..+.+-...-..+.... .+++.. ++.+++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 334667777775 2 469999998765332211111111 223332 5677777776 2 468899988
Q ss_pred cceEeE--eecCccCceEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCC
Q 001157 913 VDEVKT--KLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 913 ~~~~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1135)
+.+-.. .+......-..+.+ ++++++.|+.+ ..+.+||..+.+-... ...... ......+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~---r~~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV---APMLTR---RIGVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEEC---CCCSSC---CBSCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeEC---CCCCcc---ccceEEEEE--C
Confidence 775332 22211112222222 67777777643 3588899887542211 111110 012223333 5
Q ss_pred CcEEEEE-EC-----CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEecCCCceeec
Q 001157 986 QTHLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCR 1054 (1135)
Q Consensus 986 g~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d-----g~V~vwd~~~~~~~~~ 1054 (1135)
++.++.+ .+ ..+.+||+....-............-.++. -++++++.|+.+ ..+.+||+.+.+-...
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 22 468899984433222211110011112222 377788888765 5699999988654322
Q ss_pred cCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecC-----CcEEEEecCCCccccC
Q 001157 1055 IGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~D-----g~i~lW~~~~~~~~~~ 1108 (1135)
-. +|.. -..| ..+.. ++++++.|+.+ ..+.+||+.+.+ |.
T Consensus 247 ~~----~p~~-r~~~----~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~ 291 (308)
T 1zgk_A 247 AP----MKHR-RSAL----GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WS 291 (308)
T ss_dssp CC----CSSC-CBSC----EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EE
T ss_pred CC----CCCC-ccce----EEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--Ee
Confidence 11 1111 0122 22222 56788888755 357788887644 54
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.22 E-value=0.28 Score=52.51 Aligned_cols=229 Identities=10% Similarity=-0.022 Sum_probs=110.8
Q ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC-----C------CcEEEEEcCCCeeEE
Q 001157 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQY 491 (1135)
Q Consensus 423 la~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~ 491 (1135)
++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . ..+.+||..+++-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44444 568899998865321 23322222223333334565 5666662 1 127788988776432
Q ss_pred EecCCCCCe--EEEEeccCCCccEEEEEEcC--------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEee
Q 001157 492 TFEGHEAPV--YSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 492 ~l~~h~~~v--~~l~~~~~~~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1135)
+..-..+- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 21111111 112221 23666777643 45888888765422211111111111112235556666654
Q ss_pred CC--CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCC-----eEEEEECCCCeeeEEEeCCCCCCC
Q 001157 562 SK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 562 ~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+. .....+.+||+.+.+....-.......-.+++ .-+++.++.|+.++ .+.+||+.+.+-...-..... .
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 234 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--R 234 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--C
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 11 11346899999877644322111110111222 22566777777543 588899988754433222211 1
Q ss_pred cCeEEEecCCCEEEEEeCC--------------CcEEEEECCCc
Q 001157 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~s~~~~~l~~~~~d--------------g~v~iw~~~~~ 664 (1135)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 235 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 1222223366777777653 24677887765
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.20 E-value=1.8 Score=46.57 Aligned_cols=194 Identities=12% Similarity=0.133 Sum_probs=108.8
Q ss_pred CCeeEEEeecCCCeEEEEE------------eCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEE
Q 001157 347 SNVMSMDFHPQQQTILLVG------------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 347 ~~V~~~~fspdg~~lla~g------------s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.....++..|+|. +++++ ..+|.|.++|..+...... .+. ++.. .+....-....+
T Consensus 50 ~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~---~~g~-------~~~~~~f~PhGi 117 (355)
T 3sre_A 50 NGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELE---IIGN-------TLDISSFNPHGI 117 (355)
T ss_dssp SCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEE-ECE---EECS-------SCCGGGCCEEEE
T ss_pred CCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEE---ccCC-------CCCcCceeeeee
Confidence 3567778889885 33333 2689999999874321110 111 1000 001122345556
Q ss_pred EEcC--CCC-EEEEE-eC--CCeEEEEEcCCCCc-eeeeeEeecC-CCCeeEEEEecCCCceEEEEEcC-----------
Q 001157 415 VWGP--DGL-MLGVA-FS--KHIVHLYTYNPTGE-LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD----------- 475 (1135)
Q Consensus 415 ~~sp--dg~-~la~~-~~--dg~i~iwd~~~~~~-~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~----------- 475 (1135)
.+.+ +|+ +|.++ .. +.+|.+|+++.+.. ......+.+. -...+.+++.++|. +.++...
T Consensus 118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHH
T ss_pred EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccch
Confidence 6655 454 45444 22 56888988876533 2222234332 23578999999998 5666541
Q ss_pred ------CCcEEEEEcCCCeeEEEecCCCCCeEEEEeccCCCccEE-EEEEcCCeEEEEeCCCCCce---EEecCCCCeEE
Q 001157 476 ------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCT 545 (1135)
Q Consensus 476 ------d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~ 545 (1135)
.+.|.-+|. ++. ..+...-..-+.++|+|++ +.+ ++-+..+.|..|+++..... ..+. ......
T Consensus 196 ~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg--~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PD 269 (355)
T 3sre_A 196 MHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDG--KYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVD 269 (355)
T ss_dssp HHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEE
T ss_pred hhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCC--CEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCc
Confidence 234444443 432 2332233457889998865 444 45556789999998643322 2332 245678
Q ss_pred EEEEcC-CCCEEEEEe
Q 001157 546 MMAYSA-DGTRLFSCG 560 (1135)
Q Consensus 546 ~~~~s~-~~~~l~~~~ 560 (1135)
.+++.+ +|++.+++.
T Consensus 270 Gi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 270 NISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEECTTTCCEEEEEE
T ss_pred eEEEeCCCCcEEEEec
Confidence 889999 588877664
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.10 E-value=0.51 Score=59.13 Aligned_cols=97 Identities=7% Similarity=0.092 Sum_probs=60.0
Q ss_pred CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCC
Q 001157 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 645 (1135)
..+|.|.|+..+..+..-.- ...+.-++|..+.++.-. ..++.|||+.+.+.+....... .|.-=.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCC-C
Confidence 44788999887665432221 122345788887666653 7899999999988877766542 3444444433 3
Q ss_pred EEEEEeCCCcEEEEECCCcchheeecc
Q 001157 646 LLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 646 ~l~~~~~dg~v~iw~~~~~~~~~~~~~ 672 (1135)
.|+..+ +..|.-|++.....+.+.+.
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 455444 44899999865433444443
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.07 E-value=0.31 Score=51.95 Aligned_cols=233 Identities=7% Similarity=-0.023 Sum_probs=115.1
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC----C-----CcEEEEEc
Q 001157 418 PDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWDV 484 (1135)
Q Consensus 418 pdg~~la~~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~----d-----~~i~iwd~ 484 (1135)
-++..++.|+.+ ..+.+||..+.+-.. ...+....... +++. .++. +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 366677777632 358889988754221 11111111111 2222 2454 5666664 2 46889998
Q ss_pred CCCeeEEE--ecCCCCCeEEEEeccCCCccEEEEEEcC-----CeEEEEeCCCCCceEE--ecCCCCeEEEEEEcCCCCE
Q 001157 485 VAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 485 ~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~ 555 (1135)
.+.+.... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+-... +........++.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 87764321 1111112222222 23667776644 3577888876543221 1111112222222 5566
Q ss_pred EEEEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCC
Q 001157 556 LFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.++.+... ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 6666543221 35689999987764432111111011122222 56666777654 56899999887543322211
Q ss_pred CCCCCcCeEEEecCCCEEEEEeCC-----CcEEEEECCCc
Q 001157 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iw~~~~~ 664 (1135)
... .-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 251 ~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111 1122222 367777777643 45778888765
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.93 E-value=2.9 Score=46.76 Aligned_cols=198 Identities=12% Similarity=0.107 Sum_probs=112.2
Q ss_pred cCCCEEEEEe--CCeEEEEeCCCceEEEEeeCC-CCCeeEEEEe--CCCCcEEEEEeCC-------ccE---------EE
Q 001157 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFH--PQDNNIIAIGMED-------SSV---------QI 908 (1135)
Q Consensus 850 ~dg~~la~~s--dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s--p~~~~~lasg~~d-------g~v---------~i 908 (1135)
.||+||.+-. +..|...++...++-..+.-+ ...+..+.|- | ...+++.++.. |.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999988 578999999999887776644 3568888886 6 56677666532 221 11
Q ss_pred E---EcccceEeEeecCccCceEEEEEcCCCCeEEEEcCC---------------CcEEEEeCCC-------cc--ccc-
Q 001157 909 Y---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---------------AQLCMWSIDK-------WE--KLK- 960 (1135)
Q Consensus 909 w---d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------~~i~iWd~~~-------~~--~~~- 960 (1135)
| |..+.+....+.- .+....+...++|++.++.+.+ ..+.++++.. |+ .+.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 2222222111110 1122234557777777765422 2355565532 11 111
Q ss_pred --ceeeecCC----CCC-----CCCCCceeEEECCCCcEEEEEE--CCcEEEEecc-CCc-----c----cccCCCCCCC
Q 001157 961 --SRFIQAPA----GRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-LEC-----S----RSWSPKDALP 1017 (1135)
Q Consensus 961 --~~~~~~~~----~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~i~vwd~~-~~~-----~----~~~~~~~~h~ 1017 (1135)
..++.... +.. +.......+.++|||+++++++ +.++.|+|.+ ... + ........-.
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111111 000 0113456889999999999964 7889999983 111 1 0000011114
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCC
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~ 1049 (1135)
..-...+|.++|.-..+-.-|..|.-|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 56678999999954455568999999999764
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.92 E-value=0.75 Score=49.14 Aligned_cols=223 Identities=12% Similarity=0.016 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcC----CC-------cEEEEEcCCCeeEEE--ecCCC
Q 001157 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQYT--FEGHE 497 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~--l~~h~ 497 (1135)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988765322 12221111222223334555 6667762 11 277888877764321 11111
Q ss_pred CCeEEEEeccCCCccEEEEEEcC-------CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCC--CCce
Q 001157 498 APVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE--GESH 568 (1135)
Q Consensus 498 ~~v~~l~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~~ 568 (1135)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.+.+ ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11122222 23677777754 34777887765433322222111111122245666666654221 1345
Q ss_pred EEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecC
Q 001157 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 643 (1135)
+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-...-..... .....+...+
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~ 253 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSLA 253 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEET
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEEC
Confidence 8999998876543321111111112222 256666667633 3577899887653332111111 1122223345
Q ss_pred CCEEEEEeCC--------------CcEEEEECCCc
Q 001157 644 GSLLAVTTSD--------------NGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~d--------------g~v~iw~~~~~ 664 (1135)
+++++.|+.+ ..+.+||+.+.
T Consensus 254 ~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 6777777653 35778887765
No 340
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.86 E-value=0.13 Score=55.53 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCcccccc-----c--cceeecccccccccccccccccCCCeeEEEEcC--
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-----K--PFKVWDISAASMPLQNALLNDAAISVNRCVWGP-- 418 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-- 418 (1135)
.|..+..||+|+ +||..+ +..|.|-.+..+..... . ..+.|.+... ......+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence 788999999998 555544 67899999885432221 0 1112222110 012467899999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCCceee-------eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001157 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQ-------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 419 -dg~~la~~~~dg~i~iwd~~~~~~~~~-------~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+..|++-..|+.|++||+......-. ...+......|.+++|..++-.+|+++.++.|.|+-.
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 466899999999999999986321110 0111123356788888887765555556666766543
No 341
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.63 E-value=0.012 Score=46.99 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCccH--HHHHHHhhcccHHHHHHHhc
Q 001157 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KHFEDQVQAGEWDEVERYLC 58 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~l~~~i~~g~w~~~~~~l~ 58 (1135)
.+|+.+-|++||..+||.+++.+|.+|.++..+- ..--...++=.|..++++=+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 5689999999999999999999999999988751 22234577888888877543
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.61 E-value=0.91 Score=48.45 Aligned_cols=197 Identities=8% Similarity=-0.037 Sum_probs=92.7
Q ss_pred EEcCCCCEEEEEeC----CC-------eEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCC-------
Q 001157 415 VWGPDGLMLGVAFS----KH-------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------- 476 (1135)
Q Consensus 415 ~~spdg~~la~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------- 476 (1135)
+...++..++.|+. ++ .+.+||..+.+- .....+.........+.+ +++ +++.|+.+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~ 126 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-VGLPPLPSARCLFGLGEV--DDK--IYVVAGKDLQTEASL 126 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE-EECSCBSSCBCSCEEEEE--TTE--EEEEEEEBTTTCCEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE-EECCCCCccccccceEEE--CCE--EEEEcCccCCCCccc
Confidence 34567888888873 12 277788776532 211122211111122222 454 55556543
Q ss_pred CcEEEEEcCCCeeEEE--ecCCCCCeEEEEeccCCCccEEEEEEcC------CeEEEEeCCCCCceEEecCCC--CeEEE
Q 001157 477 KMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPG--NWCTM 546 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~--l~~h~~~v~~l~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~~v~~ 546 (1135)
..+.++|+.+.+-... +......-..+.. ++.+++.|+.+ ..+.+||..+..-...-.... ....+
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 202 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVISH----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEESCEEEEE----TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCCEeECCCCCCcccccEEEEE----CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceE
Confidence 2578889887764432 1111111111211 23666666642 358888887654332211111 11122
Q ss_pred EEEcCCCCEEEEEeeCCCC-CceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEEecC--------------Ce
Q 001157 547 MAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------FQ 611 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~ 611 (1135)
+. -+++.++.++.+.++ ...+.+||+.+.+....-.......-.++ ..-++..++.|+.+ ..
T Consensus 203 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 279 (318)
T 2woz_A 203 AI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL-VSLAGSLYAIGGFAMIQLESKEFAPTEVND 279 (318)
T ss_dssp EE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE-EEETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred EE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE-EEECCEEEEECCeeccCCCCceeccceeee
Confidence 22 256666666643221 24578899887764432111111011112 22345666666643 34
Q ss_pred EEEEECCCCeee
Q 001157 612 IKFWDMDNMNML 623 (1135)
Q Consensus 612 i~iwd~~~~~~~ 623 (1135)
+.+||+.+.+-.
T Consensus 280 v~~yd~~~~~W~ 291 (318)
T 2woz_A 280 IWKYEDDKKEWA 291 (318)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEeCCCCEeh
Confidence 667777665533
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.47 E-value=0.14 Score=49.79 Aligned_cols=147 Identities=13% Similarity=-0.011 Sum_probs=84.9
Q ss_pred CeeEEEeecCCCEEEEEeCCeEEEEeCCCceE------EEEeeC-CCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccc
Q 001157 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV------MTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1135)
Q Consensus 842 ~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~------~~~~~~-~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 914 (1135)
.+..++|+|+|.+.++ ++|.+.-.+..+... -..+-. --..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 4668999999998887 888877777654211 111110 001147899999 8888777 5698988876432
Q ss_pred eEeE-------eecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccc----ceeeecCCCCCCCCCCceeEEEC
Q 001157 915 EVKT-------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK----SRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 915 ~~~~-------~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
..-. .-.+-=..+..|.|.|+|.+.+.. |+.++-+...++.... ...+..... ..-+.+.|.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~f~ 190 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLFFS 190 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEEEC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEEEC
Confidence 1111 111111457899999999877766 7765433333211000 001110000 233457799
Q ss_pred CCCcEEEEEECCcEEEEec
Q 001157 984 NDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 984 pdg~~l~~~~d~~i~vwd~ 1002 (1135)
++|...++. ++ ++|..
T Consensus 191 ~~G~l~~v~-~g--~~Y~~ 206 (236)
T 1tl2_A 191 SVGTLFGVQ-GG--KFYED 206 (236)
T ss_dssp TTSCEEEEE-TT--EEEEE
T ss_pred CCCcEEEEe-CC--eEEec
Confidence 999988887 66 44443
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.37 E-value=0.88 Score=49.58 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=49.4
Q ss_pred CCCEEEEEe--CCeEEEEeCCC-ceEEEEeeC-C-CCC-eeEEEEeCCCCcEEEEEeC-C---------ccEEEEEcccc
Q 001157 851 NDSYVMSAS--GGKVSLFNMMT-FKVMTMFMS-P-PPA-ATFLAFHPQDNNIIAIGME-D---------SSVQIYNVRVD 914 (1135)
Q Consensus 851 dg~~la~~s--dg~i~iwd~~~-~~~~~~~~~-~-~~~-v~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~~~ 914 (1135)
++++++.|+ ...+.+||+.+ ...-..+.. + ... -.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 777777776 46799999864 111122221 1 111 1223332 5677777776 2 46899999877
Q ss_pred eEeEeecCc-cCceEEEEEcCCCCeEEEEcCC
Q 001157 915 EVKTKLKGH-QNRITGLAFSPTLNALVSSGAD 945 (1135)
Q Consensus 915 ~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D 945 (1135)
+-...-... .......+...++++++.||.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 533221111 1111111222577888888865
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.27 E-value=0.51 Score=51.49 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=110.4
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC-CCceeeeeEee-cCCCCeeEEEEecCCCceEEEEEcC-C---------CcEEEEEcC
Q 001157 419 DGLMLGVAFS-KHIVHLYTYNP-TGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGD-D---------KMIKVWDVV 485 (1135)
Q Consensus 419 dg~~la~~~~-dg~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~-d---------~~i~iwd~~ 485 (1135)
+++.++.|+. ...+.+||..+ .........+. .....-.++. -+++ +++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGN--LYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTE--EEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCE--EEEEcCCCCCCCccceeeccEEEEeCC
Confidence 6777777754 34688888874 22233222222 1111112222 2455 5555654 2 468899988
Q ss_pred CCeeEEE--ec-CCCCCeEEEEeccCCCccEEEEEEcC---------------------------------------CeE
Q 001157 486 AGRKQYT--FE-GHEAPVYSVCPHHKESIQFIFSTAID---------------------------------------GKI 523 (1135)
Q Consensus 486 ~~~~~~~--l~-~h~~~v~~l~~~~~~~~~~l~s~s~d---------------------------------------g~i 523 (1135)
+.+-... +. .....-.++. . ++.+++.|+.+ ..+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFV--H--NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEE--E--TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCcEEECCCCCCcccccceEEE--E--CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 8764331 11 1111112222 2 33677777754 578
Q ss_pred EEEeCCCCCceEEecCC--CCeEEEEEEcCCCCEEEEEeeCCCC--CceEEEEeC--CCCceeEEeecc-cCCceeEEEE
Q 001157 524 KAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNE--SEGAIKRTYSGF-RKRSLGVVQF 596 (1135)
Q Consensus 524 ~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~--~~~~~~~~~~~~-~~~~v~~~~~ 596 (1135)
.+||..+..-...-... ...-.+++. -+++.++.++.+..+ ...+..+|+ .+.+....-... ........+.
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~ 249 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG 249 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE
Confidence 88988765433322211 111122222 255566666543221 345777876 444432211110 1101111223
Q ss_pred eCCCCEEEEEecC----------------------CeEEEEECCCCeeeEEEeCCCCCCCcCeEEEecCCCEEEEEeCCC
Q 001157 597 DTTRNRFLAAGDE----------------------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 597 s~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 654 (1135)
..++..++.|+.+ ..+.+||+.+.+-...-..... .....+...++++++.|+.++
T Consensus 250 ~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp EETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEECG
T ss_pred EECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeCC
Confidence 3356666667632 2578899887654333222221 222333445778888888542
Q ss_pred ------cEEEEECCCc
Q 001157 655 ------GIKILANSDG 664 (1135)
Q Consensus 655 ------~v~iw~~~~~ 664 (1135)
.|.++++.++
T Consensus 328 ~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDN 343 (357)
T ss_dssp GGCEEEEEEEEEC-CC
T ss_pred CCCEeeeEEEEEEcCc
Confidence 4556677776
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.26 E-value=0.97 Score=47.61 Aligned_cols=173 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred eecCCCEEEEEe---CCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCC--------------ccEEEEE
Q 001157 848 LSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED--------------SSVQIYN 910 (1135)
Q Consensus 848 ~s~dg~~la~~s---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~d--------------g~v~iwd 910 (1135)
|+.+|.+|.... ++.|...+.+.... ..+.. . .+--+++ ++.+|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~--~--~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN--D--TAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE--E--EEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC--C--ceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345777777764 46788887754432 22221 1 2345577 66777666543 4677777
Q ss_pred cccceEeEeecCccCceEEEEEcCCCCeEEEEc--CC--CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCC
Q 001157 911 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--AD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1135)
Q Consensus 911 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1135)
+..++... +... . +..|++++++|+-.. .+ ..|..-++...+. . .+... .+ .+|+++|
T Consensus 95 ~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~-~lt~~--------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--K-KIKNH--------YL--FTCNTSD 156 (302)
T ss_dssp TTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--E-EEESS--------CC--CCSEEET
T ss_pred CCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--E-EEeCC--------Cc--eEeeEEC
Confidence 77665322 3211 1 236788999888765 33 3455555554331 1 12211 11 3568899
Q ss_pred cEEEEEEC--CcEEEEeccCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecC--CcEEEEecCCCc
Q 001157 987 THLLVVHE--SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--GAIGVFDAETLR 1050 (1135)
Q Consensus 987 ~~l~~~~d--~~i~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d--g~V~vwd~~~~~ 1050 (1135)
+.|+.+.+ ..|.+.++.+.....+.. +... ..++|++.+|+-...+ ..|..-+++.+.
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 99888654 567777775544433321 2222 3467999998876543 357777777554
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.06 E-value=0.14 Score=49.89 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=83.7
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecCccCc--------eEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR--------ITGLAFSPTLNALVSSGADAQLCMWSI 953 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~--------i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1135)
..++.++|+| ++.+.++ .+|.++-.+..+.+.. .+.+-... -.++.|.|+|.+.++ .||.|+-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887776 6777766665442211 11111112 368999999988887 5698887876
Q ss_pred CCcccccc----eeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCccccc----CCCCCCCCCeEEEE
Q 001157 954 DKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSW----SPKDALPAPISSAI 1024 (1135)
Q Consensus 954 ~~~~~~~~----~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~~----~~~~~h~~~i~~~~ 1024 (1135)
.+.....- ..+..- .-..+..+.|.|+|.+.++. |+.+.-... ......-+ .........-+-+.
T Consensus 115 P~~~~~~Wl~~a~~vg~~-----gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSG-----GWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp CCSTTCCHHHHSEEEECS-----SGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred CcCCCCceeccccEeccC-----CCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 43221100 011000 01356899999999999888 888543322 21111100 00001122344577
Q ss_pred EccCCCEEEEEecCCcEE
Q 001157 1025 YSCDGLLVYAGFCDGAIG 1042 (1135)
Q Consensus 1025 ~s~dg~~l~s~~~dg~V~ 1042 (1135)
|+++|.+.++. +|.++
T Consensus 189 f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp ECTTSCEEEEE--TTEEE
T ss_pred ECCCCcEEEEe--CCeEE
Confidence 88888877665 66443
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.02 E-value=0.58 Score=52.74 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceE--eEeecC------ccCceEEEEEcCC----CCeEEEEcC-----
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKG------HQNRITGLAFSPT----LNALVSSGA----- 944 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~i~~l~~s~d----~~~l~s~~~----- 944 (1135)
.....|+|.| +++++++-...+.|++++..+++. +..+.. .......|+|+|| +.+.++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888776544435788888655543 222321 2456779999995 444444332
Q ss_pred -------CCcEEEEeCCCcc-cc--cceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 945 -------DAQLCMWSIDKWE-KL--KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 945 -------D~~i~iWd~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
...|.-|++.... .+ ...++....... ......++|.|||.+.++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~--~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK--DHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS--SCCEEEEEECTTSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC--CCCCCeEeECCCCeEEEEE
Confidence 2346666654321 01 111222122111 1346899999999977774
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.61 E-value=1 Score=47.97 Aligned_cols=114 Identities=8% Similarity=-0.028 Sum_probs=69.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEeecC-CCCeeEEE---EecCCCceEEEEE-cCCCcEEEEEcCCCeeEEEecC
Q 001157 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIA---FAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 421 ~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~---~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~l~~ 495 (1135)
..+++++.||.|.-.|..+|+..-. +... ..++.... ...++. .++.. +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~---~~~~~~~p~~~~~~~~~~~~~~--~~vv~p~~dG~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS---IEPENFQPLIEIQEPSRLETYE--TLIIEPFGDGNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE---ECGGGSCCSEECCCSCTTTSSE--EEEECCSTTTEEEEEETTTEEEEEEEEH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE---ecCCccCCcEEecCCccccCCc--EEEEEECCCCEEEEEECCCCcEEeeecc
Confidence 3677888999999999888876542 2221 11221111 001223 33333 6899999999988866544421
Q ss_pred ----CCCCeEEEEeccCC-------CccEEEEEEcCCeEEEEeCCCCCceEEecCC
Q 001157 496 ----HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 496 ----h~~~v~~l~~~~~~-------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1135)
...++.. .-.|-- .+..+++|+.+|.+...|+.+++.+..+...
T Consensus 86 ~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 86 RQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2222221 100000 2368899999999999999999998887654
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.41 Score=50.97 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=103.1
Q ss_pred cEEEEEeCCccEEEEEcccceEeEeecCc-cCceEEEEE--cC-CCCeEEEE-cCCCcEEEEeCCCcccccceeeecCCC
Q 001157 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--SP-TLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1135)
Q Consensus 895 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~i~~l~~--s~-d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1135)
.++++++.||.|+-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999988754 122222110 01 22333333 689999999988875332111111110
Q ss_pred CCCCCCCcee---EEE------CCCCcEEEEEECCcEEEEec-cCCcccccCCCCCCC----CCeEEEEEc-----cCCC
Q 001157 970 RQSPLVGETK---VQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1030 (1135)
Q Consensus 970 ~~~~~~~v~~---~~f------spdg~~l~~~~d~~i~vwd~-~~~~~~~~~~~~~h~----~~i~~~~~s-----~dg~ 1030 (1135)
. .+... ... +.+|..++.+.++.+...|+ +++.+..+....... ....+.... ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 01110 001 13444444478999999998 777766665432100 001111111 1235
Q ss_pred EEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcE-EEeeCCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001157 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPL-VIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1031 ~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sp~~~~~l~s~~~Dg~i~lW~~~~~~~~~ 1107 (1135)
.|+.+..+..|.+.+ .+|+ +-.+....+.+.. ....+. ....+. |+.+ +.++.||.|.-.|..+++..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~----~~~~~~~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV----LDVPLALQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT----TTHHHHTTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc----ccccccccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 5564 2222101110100 000000 000011 4555 447889999999998888888
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.45 E-value=3.1 Score=49.86 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=102.9
Q ss_pred cCCCEEEEEe-C----CeEEEEeCCCceEEEEe-e-----CCC--CCeeEEEEeCCCCcEEEEEeCCc------cEEEEE
Q 001157 850 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-----SPP--PAATFLAFHPQDNNIIAIGMEDS------SVQIYN 910 (1135)
Q Consensus 850 ~dg~~la~~s-d----g~i~iwd~~~~~~~~~~-~-----~~~--~~v~~l~~sp~~~~~lasg~~dg------~v~iwd 910 (1135)
.++..++.|+ + ..+.+||..+++-...- . .+. ..-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 35889998876533322 1 111 1233444433 467788887543 588999
Q ss_pred cccceEeE--eecCccCceEEEEEcCCCCeEEEEcCCC--cEEEEeCCCcccccceeee-cCCCCCCCCCCceeEEECCC
Q 001157 911 VRVDEVKT--KLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQ-APAGRQSPLVGETKVQFHND 985 (1135)
Q Consensus 911 ~~~~~~~~--~l~~h~~~i~~l~~s~d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~fspd 985 (1135)
..+.+-.. .+......- +++...++++++.||.++ .+.+||..+..-....... .+... .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 88854322 222111111 223324788888888654 6899999875521111000 00011 22234566655
Q ss_pred -CcEEEEEE---C-----CcEEEEeccCCc------ccccCCCCCCCCCeEEEEEccCCCEEEEEecC--------CcEE
Q 001157 986 -QTHLLVVH---E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIG 1042 (1135)
Q Consensus 986 -g~~l~~~~---d-----~~i~vwd~~~~~------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~d--------g~V~ 1042 (1135)
++.++.|+ + +.+.+||+.... .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 55666642 2 358899983333 11110000001111123333447888888743 4599
Q ss_pred EEecCCCcee
Q 001157 1043 VFDAETLRFR 1052 (1135)
Q Consensus 1043 vwd~~~~~~~ 1052 (1135)
+||..+++-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999987654
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.40 E-value=3.7 Score=42.61 Aligned_cols=223 Identities=14% Similarity=0.058 Sum_probs=115.4
Q ss_pred CCeeEEEeecCCCEEEEEeCCeEEEEeCCCceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEee
Q 001157 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 920 (1135)
..|..++.... ..++.. ||.|..|-......+..-......|..++... ...++. . ||.|+.|-....-.+..-
T Consensus 24 ~~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 34556655433 223333 78888886553211111111124677777754 234444 5 999999976543222111
Q ss_pred cCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEE
Q 001157 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1135)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vw 1000 (1135)
..-...|..++...+...+ .. ||.|+.|-......+.... . ....|..++...+... +.. |+.|..|
T Consensus 98 ~~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~~~---~-----~~~~i~~i~~G~~~~~-~l~-~G~v~~w 164 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTVPA---E-----AQSGVTALDGGVYTAL-AVK-NGGVIAW 164 (282)
T ss_dssp GGGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSCCG---G-----GGSSEEEEEECSSEEE-EEE-TTEEEEE
T ss_pred cccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCCCc---c-----CCCCeEEEEcccCEEE-EEE-CCEEEEe
Confidence 1113468888776543333 34 8999999876533221100 0 0134566655444332 234 8999999
Q ss_pred ec-cCCcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeC
Q 001157 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1079 (1135)
-. ....+...... ...|..++...+.. ++. .||.|+.|-....-.+. .|.. ....+..++.-
T Consensus 165 G~n~~gqlg~p~~~---~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~----~~~~v~~i~~G 227 (282)
T 3qhy_B 165 GDNYFGQTTVPAEA---QSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE----ALSGVSAIASG 227 (282)
T ss_dssp ECCTTSTTSCCGGG---GSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG----GGSSCCEEEEC
T ss_pred cCCCCCCCCCceec---CCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc----cCCCceEEEcC
Confidence 87 22222211111 35687777655433 333 59999999776543321 1111 01235555543
Q ss_pred CCCCCEEEEEecCCcEEEEecCCC
Q 001157 1080 PSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1080 p~~~~~l~s~~~Dg~i~lW~~~~~ 1103 (1135)
. ...++. + ||+|..|--...
T Consensus 228 ~--~h~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 228 E--WYSLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp S--SCEEEE-E-TTEEEEESTTCC
T ss_pred C--CEEEEE-E-CCEEEEecCCCC
Confidence 2 233443 4 999999987653
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.39 E-value=12 Score=41.80 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=59.6
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEee---------cCCCCeeEEEEecC---CCceEEEEEc-C
Q 001157 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP---NKQLCIVTCG-D 475 (1135)
Q Consensus 410 ~V~~v~~spdg~-~la~~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d---~~~~~l~s~~-~ 475 (1135)
....|+|.|||+ .|+++...|.|++++.........+..+. ........|+|+|+ +..+|++-.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 56666789999999754321111111111 11456789999997 3333333222 1
Q ss_pred C----------CcEEEEEcCC----------CeeEEEec--CCCCCeEEEEeccCCCccEEEEEEcC
Q 001157 476 D----------KMIKVWDVVA----------GRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAID 520 (1135)
Q Consensus 476 d----------~~i~iwd~~~----------~~~~~~l~--~h~~~v~~l~~~~~~~~~~l~s~s~d 520 (1135)
+ ..|.-|.+.. .+.+..+. ........|+|.|++ .+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG--~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG--FLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS--CEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC--cEEEEeCCC
Confidence 1 1344465542 12333332 222345788998754 666665543
No 354
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.76 E-value=11 Score=39.47 Aligned_cols=179 Identities=8% Similarity=0.058 Sum_probs=99.3
Q ss_pred EEEeecCCCeEEEEEeCC-------------CcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEc
Q 001157 351 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 351 ~~~fspdg~~lla~gs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+--++++|+++..+...+ ..|+..++..++... +.. -.+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~----~~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP----DPCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC----SCEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec----CCccEEE
Confidence 455689998777666543 355656665543221 111 1233788
Q ss_pred CCCCEEEEEe--C--CCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEc-CCCcEEEEEcCCCeeEEE
Q 001157 418 PDGLMLGVAF--S--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 418 pdg~~la~~~--~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~ 492 (1135)
+++++|+-.. . +..|...++++... . .+..+.. .+|+++++. |+-.+ ....|.+-++..+.....
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~---~lt~~~~----~~~~~~g~~--iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEEK-K---KIKNHYL----FTCNTSDRY--FYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCCC-E---EEESSCC----CCSEEETTE--EEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCCe-E---EEeCCCc----eEeeEECCE--EEEEeCCCceEEEEECCCCCEEEE
Confidence 8999999876 2 34555556654332 2 3333322 467888984 44333 467888888776654433
Q ss_pred ecCCCCCeEEEEeccCCCccEEEEEEcC--CeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEE
Q 001157 493 FEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 493 l~~h~~~v~~l~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+. +... ..++|.+ .+|+-...+ ..|..-+++.... ..+.. ..+ ..|+|++++|+.+.. . ....|.
T Consensus 183 ~~---~~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~-~-~~~~i~ 249 (302)
T 3s25_A 183 YD---CNCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRG-G-DNPALC 249 (302)
T ss_dssp EC---SCEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEEC-S-SSCEEE
T ss_pred eC---CCcc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEEC-C-CCcEEE
Confidence 33 2222 2345654 566655543 3555556654443 33322 223 347889999986642 1 235677
Q ss_pred EEeCCC
Q 001157 571 EWNESE 576 (1135)
Q Consensus 571 ~wd~~~ 576 (1135)
.-++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 777653
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.55 E-value=14 Score=38.13 Aligned_cols=223 Identities=13% Similarity=0.083 Sum_probs=112.6
Q ss_pred CeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEEEEe
Q 001157 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la~~~ 427 (1135)
.|..++-... +.++. . ||.|..|-......+.. + ......|..++...+-..++ .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs~~l--~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHSLAL--K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEEEEE--E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEEEEE--E
Confidence 5666665444 33444 4 88999997665443321 0 01123577777654433333 4
Q ss_pred CCCeEEEEEcCCCCceeeeeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEecCCCCCeEEEEecc
Q 001157 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~h~~~v~~l~~~~ 507 (1135)
||.|..|-......+..... -...|..++...+- .+.-. |+.|..|-....-.+..-......|..++...
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~~---~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPAE---ARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCGG---GSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCcc---cCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 89999998765433321111 13467777765443 33334 89999997654221111111234576666432
Q ss_pred CCCccEEEEEEcCCeEEEEeCCCCCceEEecCCCCeEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEeeccc
Q 001157 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
. ..++ -. ||.|..|-.......-........|..++...+...++ . ++.|+.|-......+-. ....
T Consensus 151 ~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~~ 217 (282)
T 3qhy_B 151 Y---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTEA 217 (282)
T ss_dssp S---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGGG
T ss_pred C---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Cccc
Confidence 1 3333 34 79999996554332211111123566665544322222 2 56688886543211111 1111
Q ss_pred CCceeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 001157 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
...|..++..... .++-. ||.|+.|-....
T Consensus 218 ~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 218 LSGVSAIASGEWY--SLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GSSCCEEEECSSC--EEEEE-TTEEEEESTTCC
T ss_pred CCCceEEEcCCCE--EEEEE-CCEEEEecCCCC
Confidence 1246666655433 23333 899999976653
No 356
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.33 E-value=19 Score=39.26 Aligned_cols=205 Identities=11% Similarity=0.080 Sum_probs=107.0
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-----------eEeEeecCc-cCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-----------EVKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-----------~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
.+..++++. +....+..+.||.|+.|-.... .....+..- ...|..|+.. ..+.+....||.|+.
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677877 6777777889999999965321 111112211 2256666654 345555667999999
Q ss_pred EeCCCcccc---------cceeeecCCCCCCCCCCceeEEECC-CCcEEEEEECCcEEEEec-cCCccc-----------
Q 001157 951 WSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVHESQISVYDS-KLECSR----------- 1008 (1135)
Q Consensus 951 Wd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~d~~i~vwd~-~~~~~~----------- 1008 (1135)
|-.....++ ....+..+.+ ..+..++... +...++...++.|..|-. ....+.
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~-----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 257 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQG-----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE
T ss_pred eCCCCCCCcCCCCCcccccceEecccCC-----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE
Confidence 976542211 1111111211 2455666554 344455578899999976 211110
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCCCCEEE
Q 001157 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1009 ~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~ 1087 (1135)
...... ...|..++...+ +.++-..||.|+.|-....-.+..-.. ....|.....-....+..++. +....+
T Consensus 258 ~v~~~~--~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~ 330 (389)
T 3kci_A 258 KIDSLT--GLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCV 330 (389)
T ss_dssp ECGGGT--TSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEE
T ss_pred EecccC--CCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEE
Confidence 000000 224555554333 444456899999997754322211000 001111110111234555554 345556
Q ss_pred EEecCCcEEEEecCC
Q 001157 1088 LGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1088 s~~~Dg~i~lW~~~~ 1102 (1135)
.-..||+|..|-...
T Consensus 331 al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 331 CCTEDGEVYTWGDND 345 (389)
T ss_dssp EEETTCCEEEEECCT
T ss_pred EECCCCCEEEeeCCC
Confidence 668899999998754
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.04 E-value=11 Score=44.97 Aligned_cols=197 Identities=13% Similarity=0.080 Sum_probs=101.3
Q ss_pred cCCCceEEEEEcCC----CcEEEEEcCCCeeEEEe-c-----CCCCC-eEEEEeccCCCccEEEEEEcCC------eEEE
Q 001157 463 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-----GHEAP-VYSVCPHHKESIQFIFSTAIDG------KIKA 525 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~l-~-----~h~~~-v~~l~~~~~~~~~~l~s~s~dg------~i~~ 525 (1135)
.++. +++.||.+ ..+.+||..+++....- . ..... -.+++.... ++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence 3455 56666643 46888998877644322 1 01111 122222210 336777776543 4778
Q ss_pred EeCCCCCceEEecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCceeEEee---cc-cCCceeEEEEeCC-
Q 001157 526 WLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GF-RKRSLGVVQFDTT- 599 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~-~~~~v~~~~~s~~- 599 (1135)
||..+..-...-..... .-.+++...+++.++.||.+..+ .+.+||..+......-. .. ......++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 88776432221111111 11233332477888887764433 79999998876543321 00 1112233555655
Q ss_pred CCEEEEEec--C-----CeEEEEECCCCee-----eEEEeCC-CCCCCcCeEEEecCCCEEEEEeC--------CCcEEE
Q 001157 600 RNRFLAAGD--E-----FQIKFWDMDNMNM-----LTTVDAD-GGLPASPRLRFNKEGSLLAVTTS--------DNGIKI 658 (1135)
Q Consensus 600 ~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------dg~v~i 658 (1135)
+..++.||. + ..+.+||+.+.+- ...+... .....-.+++...++.+++.|+. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 556666764 2 4689999988761 2222211 00001123333444777777774 346888
Q ss_pred EECCCc
Q 001157 659 LANSDG 664 (1135)
Q Consensus 659 w~~~~~ 664 (1135)
||..+.
T Consensus 631 yd~~t~ 636 (695)
T 2zwa_A 631 LDPLSE 636 (695)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 888766
No 358
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.62 E-value=39 Score=40.09 Aligned_cols=248 Identities=8% Similarity=0.015 Sum_probs=125.4
Q ss_pred eEEE-eecCCCeEEEEEeCCC----cEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCCCCEEE
Q 001157 350 MSMD-FHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 350 ~~~~-fspdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~la 424 (1135)
..+. ++||+++++++-|..| .++++|+.+++.+.. .|. .....+. + -......++|. |++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~------~---~~~~~~~~~W~-d~~~~~ 199 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK------L---LEGKFTYPTWI-NKDTII 199 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC------B---CCEETCCEEEE-ETTEEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc------c---cccccceeeEE-CCCEEE
Confidence 4455 8999987666655544 799999999987642 111 0000000 0 00012344776 333333
Q ss_pred EEe-----------CCCeEEEEEcCCCCceeeeeEeecCCCCe-eEEEEecCCCce---EEEEEcCC---CcEEEEEcCC
Q 001157 425 VAF-----------SKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQL---CIVTCGDD---KMIKVWDVVA 486 (1135)
Q Consensus 425 ~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~s~d~~~~---~l~s~~~d---~~i~iwd~~~ 486 (1135)
.+. ....|+.|.+-+...-. ...+.+....+ .....+++++.. .+++.+.+ ..+.+.|...
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 331 13468888876653211 11333333333 344556676631 34544322 4566667553
Q ss_pred --CeeEEEecCCCCCeEEEEeccCCCccEEEEE----------EcCCeEEEEeCCCCC-------ceEE-e-cCCCCeEE
Q 001157 487 --GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRVD-Y-DAPGNWCT 545 (1135)
Q Consensus 487 --~~~~~~l~~h~~~v~~l~~~~~~~~~~l~s~----------s~dg~i~~wd~~~~~-------~~~~-~-~~~~~~v~ 545 (1135)
++ +..+....... +..+.. +.+++.. ...+.|...|+.+.. .... + ......+.
T Consensus 279 ~~~~-~~~l~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLK-LQKINMPSDAT--LQGSFK--EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCE-EEECCSCTTCE--EEEEET--TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCc-ceEeecCCcce--EeeeEC--CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 43 23332222211 111222 2444422 246778889987641 2222 3 23344778
Q ss_pred EEEEcCCCCEEEEEeeCCCCCceEEEEeCCCCc-eeEE-eecccCCceeEEEEeCCCCEEE-EEe---cCCeEEEEECC
Q 001157 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFL-AAG---DEFQIKFWDMD 618 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~-~~~---~dg~i~iwd~~ 618 (1135)
.+.+..+ ..+++... ++...+.++|+.++. .... +.......+.....++++..++ +.+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 8888876 44444433 345678899887665 2333 3222222566666667765444 333 44778888887
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.30 E-value=41 Score=37.50 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.5
Q ss_pred ceeEEEEeCCCC-EEEEEecCCeEEEEECC
Q 001157 590 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 590 ~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~ 618 (1135)
....++|.|+|. .++++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999996 56666688999999754
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.06 E-value=38 Score=36.86 Aligned_cols=260 Identities=12% Similarity=0.006 Sum_probs=117.5
Q ss_pred CCCeeEEEeec--CCCEEEEEeCC----eEEEEeCCCceEEEEeeC--------------CCCCeeEEEEeCCC-CcEEE
Q 001157 840 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFMS--------------PPPAATFLAFHPQD-NNIIA 898 (1135)
Q Consensus 840 ~~~v~~l~~s~--dg~~la~~sdg----~i~iwd~~~~~~~~~~~~--------------~~~~v~~l~~sp~~-~~~la 898 (1135)
...|.+++++| ++.+.+.+..| .|...+ +.++.-..+.. ....|.+++++|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 56666655554 444432 22222111111 11257789998733 44555
Q ss_pred EEeCCccEEEEEcc--cceEeEeecC----------------ccCceEEEEEcCC-CCeEEEEcCCCcEEEEeCCCcccc
Q 001157 899 IGMEDSSVQIYNVR--VDEVKTKLKG----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEKL 959 (1135)
Q Consensus 899 sg~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~~ 959 (1135)
+++..+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.-
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence 55556655554311 1222221111 1235789999873 34444444344343332 222210
Q ss_pred cceeeec-CCC-CCC-----CCCCceeEEECCC-CcEEEEEECCcEEEEeccCCcccccCCCCCC--CCCeEEEEEcc-C
Q 001157 960 KSRFIQA-PAG-RQS-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSC-D 1028 (1135)
Q Consensus 960 ~~~~~~~-~~~-~~~-----~~~~v~~~~fspd-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~~h--~~~i~~~~~s~-d 1028 (1135)
. .+.. ... ... ....+..+++.|+ ...|.++..+.|...+-.++....+...... ...+.+++++| +
T Consensus 212 ~--~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 K--PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp E--ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred e--ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 0 1110 000 000 0024788999986 3556666666665554333332222110100 13456788876 3
Q ss_pred CCEEEEEec-----------CCcEEEEecCC-CceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEE
Q 001157 1029 GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1029 g~~l~s~~~-----------dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~ 1096 (1135)
...|+++.. ++...+|...+ |+.-..+. .-+|..... .......++++|.++..|..++.++.|
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~-~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAW-LTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCC-CCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCcccc-ceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 334444432 33344554443 34333322 011210000 001123567777665667767666654
Q ss_pred EEecCCCccccC
Q 001157 1097 VVEPSDAELKWG 1108 (1135)
Q Consensus 1097 lW~~~~~~~~~~ 1108 (1135)
|....+-.+|.
T Consensus 366 -~~S~D~G~tW~ 376 (394)
T 3b7f_A 366 -WASADEGEHWQ 376 (394)
T ss_dssp -EEESSTTSBCE
T ss_pred -EEECCCCCCce
Confidence 44444445565
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.49 E-value=54 Score=40.57 Aligned_cols=40 Identities=20% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~ 1057 (1135)
..+.+++..++..++++-+.|++++||++.+++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4577788888999999999999999999999998887654
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=86.20 E-value=40 Score=36.24 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=91.3
Q ss_pred cEEEEEcCCC--eeEEEecC------CCCCeEEEEec-cC-----CCccEEEEEEcCCeEEEEeCCCCCceEEec----C
Q 001157 478 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-HK-----ESIQFIFSTAIDGKIKAWLYDYLGSRVDYD----A 539 (1135)
Q Consensus 478 ~i~iwd~~~~--~~~~~l~~------h~~~v~~l~~~-~~-----~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----~ 539 (1135)
.|.+||+.++ +.++++.- ....+..+++. .. .++...++-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5678888888 87776542 23457788876 21 123334444567889999998876554331 1
Q ss_pred C--------------CCeEEEEEEcCC----CCEEEEEeeCCCCCceEEEEe---CCCC---ceeEEeecccC--CceeE
Q 001157 540 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWN---ESEG---AIKRTYSGFRK--RSLGV 593 (1135)
Q Consensus 540 ~--------------~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd---~~~~---~~~~~~~~~~~--~~v~~ 593 (1135)
. ...+..++++|+ ++.|+..... ...++-.. ++.. ..++.+ +... ..-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls---s~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS---AIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS---CSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC---CCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcce
Confidence 1 136788999998 7787766532 11232222 1111 112222 2121 12334
Q ss_pred EEEe-CCCCEEEEEecCCeEEEEECCCC----eeeEEEeCCCCCCCcCeEEEecCCCEEE
Q 001157 594 VQFD-TTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 594 ~~~s-~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 648 (1135)
.++. .+|..+++--..+.|..|+..+. +....+........+..+.+..+|.+.+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEE
Confidence 5665 56666666668889999998761 2233333222333445555555554333
No 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.35 E-value=51 Score=35.83 Aligned_cols=205 Identities=11% Similarity=0.031 Sum_probs=104.7
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-e----------EeEeecC-ccCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
.|..++- +....+....||.|+.|-.... + ....+.. ....+..++++....+.+....||.|+.
T Consensus 54 ~i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred ceEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 3444543 4456666788999999964421 1 1111221 1223555667666677777788999999
Q ss_pred EeCCCcccc---------cceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCccc-----------c
Q 001157 951 WSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSR-----------S 1009 (1135)
Q Consensus 951 Wd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~-----------~ 1009 (1135)
|-......+ ....+..+.+ ..|..++.. ....++...+|.|..|-. ....+. .
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~-----~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~ 204 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRG-----IEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL 204 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCC-----CeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceE
Confidence 976442211 1111111111 234444433 223344467889999976 211110 0
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCCCCEEEE
Q 001157 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1010 ~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s 1088 (1135)
.... ....|..++......+.++-..||.|+.|-....-.+..-.. ....|.....-....+..++. +....++
T Consensus 205 v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~---G~~hs~a 279 (389)
T 3kci_A 205 VEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC---GSQFSVA 279 (389)
T ss_dssp CGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE---ETTEEEE
T ss_pred eccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC---CCCEEEE
Confidence 0000 134566666654335566667899999997654322211000 001111110111224555554 3355556
Q ss_pred EecCCcEEEEecC
Q 001157 1089 GMSDGAVHVVEPS 1101 (1135)
Q Consensus 1089 ~~~Dg~i~lW~~~ 1101 (1135)
-+.||.|..|-..
T Consensus 280 lt~~G~v~~wG~n 292 (389)
T 3kci_A 280 LTKSGAVYTWGKG 292 (389)
T ss_dssp EETTSCEEEEECC
T ss_pred EeCCCeEEEEeCC
Confidence 6789999999874
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=83.39 E-value=41 Score=39.95 Aligned_cols=242 Identities=9% Similarity=0.039 Sum_probs=119.0
Q ss_pred EEE-EcCCCCEEEEEe-----CCCeEEEEEcCCCCceeeeeEee-cCCC------CeeEEEEecCCCceEEEEE------
Q 001157 413 RCV-WGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEID-AHVG------GVNDIAFAHPNKQLCIVTC------ 473 (1135)
Q Consensus 413 ~v~-~spdg~~la~~~-----~dg~i~iwd~~~~~~~~~~~~~~-~h~~------~v~~l~~s~d~~~~~l~s~------ 473 (1135)
.+. ++||+++++.+- +...++++|+.+++.+.. .+. .-+. ....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~--~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN--GFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT--CSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC--CcccccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 344 889999888762 234699999999865431 111 0000 113458874443 34432
Q ss_pred ----cCCCcEEEEEcCCCe--eEEEecCCCCCe-EEEEeccCCCcc---EEEEEEcC---CeEEEEeCCCCC-ceEEecC
Q 001157 474 ----GDDKMIKVWDVVAGR--KQYTFEGHEAPV-YSVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLG-SRVDYDA 539 (1135)
Q Consensus 474 ----~~d~~i~iwd~~~~~--~~~~l~~h~~~v-~~l~~~~~~~~~---~l~s~s~d---g~i~~wd~~~~~-~~~~~~~ 539 (1135)
+....|+.|.+-+.. -...+.+....+ .+...+.++... .+++.+.+ ..+.+.+.+... ....+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123578888876542 223344433333 223334443322 35554423 345555654322 2233333
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCC------CCCceEEEEeCCCCc-------eeEE-eecccCCceeEEEEeCCCCEEEE
Q 001157 540 PGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~s~~~~~l~~ 605 (1135)
..... +..+.++.+++....+. -..+.|...|+.++. ..+. +....+..+..+.+..+ ..+++
T Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 33211 23344555555332110 135678888887632 1222 44444446777888865 46666
Q ss_pred EecCCe--EEEEECCCCe-eeEE-EeCCCCCCCcCeEEEecCCC-EEEEEeC---CCcEEEEECC
Q 001157 606 AGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGS-LLAVTTS---DNGIKILANS 662 (1135)
Q Consensus 606 ~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~---dg~v~iw~~~ 662 (1135)
...++. ++++++.+++ .... +..... ..+.....++++. ++++.+. -+.+..+|..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666664 6677776664 2333 333211 2344445556554 3333332 3456666654
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.31 E-value=57 Score=34.28 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCeeEEEeec---CCCEEEEEe-CCeEEEEeCCCceE-------EEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEE
Q 001157 840 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKV-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1135)
Q Consensus 840 ~~~v~~l~~s~---dg~~la~~s-dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~i 908 (1135)
...|.++..-+ +..+++..+ +|.|+...+..... ...++. .+.+..+.... +...|+..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45566654433 467888887 89999887754321 122332 34555555555 5567888889999888
Q ss_pred EEcc--c---------ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001157 909 YNVR--V---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1135)
Q Consensus 909 wd~~--~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1135)
+... . |...-.+. ....|.++...+++.+|+.++..|.++.-.+..
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 8776 2 11111232 234577766666667888888888888777664
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.62 E-value=66 Score=34.54 Aligned_cols=169 Identities=11% Similarity=0.160 Sum_probs=91.7
Q ss_pred eEEEEeCCCc--eEEEEeeCC------CCCeeEEEEe---CC---CCcEEEEEe-CCccEEEEEcccceEeEeec-----
Q 001157 862 KVSLFNMMTF--KVMTMFMSP------PPAATFLAFH---PQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKLK----- 921 (1135)
Q Consensus 862 ~i~iwd~~~~--~~~~~~~~~------~~~v~~l~~s---p~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~----- 921 (1135)
+|.+||+.+. ++++++.-+ ......+++. |. ++.++...+ ..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888776532 2347788887 21 134444444 45789999999887554431
Q ss_pred ---------Cc----cCceEEEEEcCC----CCeEEEEcCCCcEEEEeCCCcccccce-----eeecCCCCCCCCCCcee
Q 001157 922 ---------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKSR-----FIQAPAGRQSPLVGETK 979 (1135)
Q Consensus 922 ---------~h----~~~i~~l~~s~d----~~~l~s~~~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~v~~ 979 (1135)
|. ...|..|++||+ ++.|.-....+ -++|.+.+.-..... ......+. ...-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~---~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGK---YNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCT---TCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCC---CCCcce
Confidence 11 136888999998 67766655444 255555432111100 00001110 022234
Q ss_pred EEEC-CCCcEEEE-EECCcEEEEeccC-C----cccccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001157 980 VQFH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1135)
Q Consensus 980 ~~fs-pdg~~l~~-~~d~~i~vwd~~~-~----~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~ 1035 (1135)
.++. .+|..+++ ...+.|..|+..+ . .+..+... ..-.-...+++.++|.+.+..
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d-~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS-SRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC-TTCCSEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC-CCccccCeEEECCCCeEEEEE
Confidence 5665 56766666 4678899999854 2 11221111 112235566666666544443
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.99 E-value=56 Score=33.36 Aligned_cols=205 Identities=10% Similarity=0.035 Sum_probs=111.2
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEE---EEcccceEeEeecCccCceEEEEEcC--CCCeEEEEcCCCcEEEEeCCCcc
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQI---YNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKWE 957 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~i~~l~~s~--d~~~l~s~~~D~~i~iWd~~~~~ 957 (1135)
.+..+.... ....|+.-+.+|.++- |++..+.....+. ....|..+.. + +..+++.++.+|.++-..+....
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 444444444 3445666777777664 4444332111133 3456766654 4 46789999999999999887643
Q ss_pred cccceeeecCCCCCCCCCCceeEEECCCCcE-EEEEECCcEEEEec-cCCc-------ccccCCCCCCCCCeEEEEEccC
Q 001157 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTH-LLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCD 1028 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~-l~~~~d~~i~vwd~-~~~~-------~~~~~~~~~h~~~i~~~~~s~d 1028 (1135)
....-.....-. ..+.+..+....+... ++.+..|.+..+.. .-.. +..+... ....|.++...++
T Consensus 102 -~~~~G~~~i~lk--egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~--~~d~vv~~~~~~~ 176 (276)
T 3no0_A 102 -YKAQGMPIIKLT--EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE--KNDETSGLRIWNG 176 (276)
T ss_dssp -TCSTTEECSCCC--TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEEEESS
T ss_pred -hhcCCeEEEecC--CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC--CCCEEEEEEEeCC
Confidence 111111111100 1145555555544444 44478888877776 2111 1111111 1466777776677
Q ss_pred CCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEE--EecC
Q 001157 1029 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHV--VEPS 1101 (1135)
Q Consensus 1029 g~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~l--W~~~ 1101 (1135)
+..|+..+..|.++...+.......+-... .... .....+..+.... ++..++..+.+|.+.. ++.+
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG----v~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKG----TEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCC----EECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcc----eEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 778888999999999988654433321100 0000 1123444443333 3446666778888877 7764
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.11 E-value=72 Score=32.53 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=73.8
Q ss_pred CCCeeEEEeec--CCCEEEEEe-CCeEEEEeCCCce------EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEE
Q 001157 840 EESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFK------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1135)
Q Consensus 840 ~~~v~~l~~s~--dg~~la~~s-dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 910 (1135)
...|..+.. + +..+++..+ +|.++...+.... ....++ ..+.+..+.... +...|+..+.+|.++.+.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 566766654 4 467888887 8999988876532 111222 234565655555 556788899999998887
Q ss_pred ccc---------ceEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCc
Q 001157 911 VRV---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1135)
Q Consensus 911 ~~~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1135)
... |...-.+.. .+.|.++...+++..++.++..|.++...+...
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 643 222222332 355766666666778999999999999887653
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=72.49 E-value=1.1e+02 Score=33.02 Aligned_cols=238 Identities=8% Similarity=-0.013 Sum_probs=107.6
Q ss_pred CCCeeEEEEcC--CCCEEEEEeCCC--eEEEEEc-CCCCceeeeeE---eec--------CCCCeeEEEEecC--CCceE
Q 001157 408 AISVNRCVWGP--DGLMLGVAFSKH--IVHLYTY-NPTGELRQHLE---IDA--------HVGGVNDIAFAHP--NKQLC 469 (1135)
Q Consensus 408 ~~~V~~v~~sp--dg~~la~~~~dg--~i~iwd~-~~~~~~~~~~~---~~~--------h~~~v~~l~~s~d--~~~~~ 469 (1135)
...|.+|++.| ++...+.+ ..| .-.||-. +.++....... +.. ....|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEe-cCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 34699999998 45555444 333 0123333 34443332211 111 1125778999873 33 3
Q ss_pred EEEEcCCCcEEEEEcCCCeeEEEecC-------------------CCCCeEEEEeccCCCccEEEEEEcCCeEEEEeCCC
Q 001157 470 IVTCGDDKMIKVWDVVAGRKQYTFEG-------------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~~l~~-------------------h~~~v~~l~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1135)
+..+...+.|...+ ..|+.-..+.. ....+.+|.++|...+. +..+..++.|...+ +.
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~~ggl~~s~-Dg 207 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMSSGGVFEST-DA 207 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEETBEEEEES-ST
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEECCCCEEEEC-CC
Confidence 44454455444432 23333222211 12357788887754333 44444444443332 11
Q ss_pred CCceEEecC--C-----------CCeEEEEEEcCC-CCEEEEEeeCCCCCceEEEEeCCCCceeEEeec-ccC---Ccee
Q 001157 531 LGSRVDYDA--P-----------GNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRK---RSLG 592 (1135)
Q Consensus 531 ~~~~~~~~~--~-----------~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~v~ 592 (1135)
++.-..+.. . ...+.++++.|+ ...++++. .+-|+..+- .++.-..+.. ... ..+.
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~ 281 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDR-REGVWKRIGDAMPREVGDIGF 281 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEET-TTTEEECGGGGSCTTTCSCEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCC-CCCcceECCCCCCCCCccceE
Confidence 222111111 0 135889999986 35566554 222544432 2332222221 111 1355
Q ss_pred EEEEeCC-CCEEEEEec-----------CCeEEEEECCC-CeeeEEEeC--CCCC--C--CcCeEEEecC-CCEEEEEeC
Q 001157 593 VVQFDTT-RNRFLAAGD-----------EFQIKFWDMDN-MNMLTTVDA--DGGL--P--ASPRLRFNKE-GSLLAVTTS 652 (1135)
Q Consensus 593 ~~~~s~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~~~~s~~-~~~l~~~~~ 652 (1135)
.+.++|. ...++++.. ++...+|...+ ++....+.. .... . ....++++|. ...|+.++.
T Consensus 282 ~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~ 361 (394)
T 3b7f_A 282 PIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTT 361 (394)
T ss_dssp EEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECT
T ss_pred EEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeC
Confidence 6778763 344555432 23344555443 444444431 1100 0 1236888874 345666665
Q ss_pred CCcEE
Q 001157 653 DNGIK 657 (1135)
Q Consensus 653 dg~v~ 657 (1135)
++.|.
T Consensus 362 ~g~l~ 366 (394)
T 3b7f_A 362 GGEIW 366 (394)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 55543
No 370
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.69 E-value=71 Score=39.52 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=31.6
Q ss_pred ceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccce
Q 001157 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1135)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1135)
.+.+++..++..++++.+.|+++|+|++.+++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888899999999999999999998865543
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=59.89 E-value=1.6e+02 Score=30.39 Aligned_cols=239 Identities=12% Similarity=0.086 Sum_probs=124.0
Q ss_pred CCCEEEEEe-CCeEEEEeCCCceEEEE---------eeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-------
Q 001157 851 NDSYVMSAS-GGKVSLFNMMTFKVMTM---------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------- 913 (1135)
Q Consensus 851 dg~~la~~s-dg~i~iwd~~~~~~~~~---------~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------- 913 (1135)
+..++++.+ +|.|+--.+...+..+. ++ ..+.+..+.... ....|+..+..|.++-.....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455666777 78888777665432211 22 223444444444 456777788888877665432
Q ss_pred --ceEeE---eecCccCceEEEEEc---CCCCeEEEEcCCCcEEEEeCCCcccccc---eeeecCCCCCCCCCCceeEEE
Q 001157 914 --DEVKT---KLKGHQNRITGLAFS---PTLNALVSSGADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQF 982 (1135)
Q Consensus 914 --~~~~~---~l~~h~~~i~~l~~s---~d~~~l~s~~~D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~f 982 (1135)
|..+. .+. ....|.++..- .++.+++.++.+|.++--.+........ ..+....+ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22222 122 33456665442 3566899999999999998764332211 11111111 33444444
Q ss_pred -CCCCcEEEEEECCcEEEEec-cCCcc-------cccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceee
Q 001157 983 -HNDQTHLLVVHESQISVYDS-KLECS-------RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1135)
Q Consensus 983 -spdg~~l~~~~d~~i~vwd~-~~~~~-------~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~ 1053 (1135)
..+...++++.+|.+..++. .-... ..+.. .-...|.++....++..|++.+..|.++-.++.......
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe--CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC
Confidence 44445555578888877776 22111 11111 124567777665666778888999999988875433222
Q ss_pred ccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecCC
Q 001157 1054 RIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
+-... ............+..+.... +..-|+..+.+|.+.-.+++.
T Consensus 232 Rg~kG--~~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 232 RATKG--VISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TTSCC--EESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCC--EEeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 21100 00011112224455544433 334556667788777666643
No 372
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.05 E-value=2.1e+02 Score=30.48 Aligned_cols=241 Identities=10% Similarity=-0.006 Sum_probs=127.8
Q ss_pred cCCCEEEEEe-CCeEEEEeCCC---------ceEEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc------
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMT---------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------ 913 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------ 913 (1135)
|+..++++.+ +|.|+--.+.. +..-..++ ..+.+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 5667777777 88888765432 12222333 345666666665 566777788888877665431
Q ss_pred ---ceEeEe---ecCccCceEEEEEcC---CCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECC
Q 001157 914 ---DEVKTK---LKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1135)
Q Consensus 914 ---~~~~~~---l~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1135)
|..+.. +. ....|.++.... ++.+|+.++..|.++-..+.........-+....-.. .+.+..+....
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~--~d~lv~v~~~~ 159 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE--GDALVGVALTD 159 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT--TCCEEEEEEEC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC--CCEEEEEEEeC
Confidence 222221 22 234566654432 4568999999999999987654421111111111000 13444444443
Q ss_pred -CCcEEEEEECCcEEEEec-cCCc-------ccccCCCCCCCCCeEEEEEcc----------------------------
Q 001157 985 -DQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSC---------------------------- 1027 (1135)
Q Consensus 985 -dg~~l~~~~d~~i~vwd~-~~~~-------~~~~~~~~~h~~~i~~~~~s~---------------------------- 1027 (1135)
+...++++.+|.+..+.. .-.. ++.+.. .....|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL--AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEECCC--------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe--CCCCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 344455577888777776 2111 111111 1145666666554
Q ss_pred -------CCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEec
Q 001157 1028 -------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1028 -------dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~ 1100 (1135)
++..|++.+..|..+...+.......+-... +...........+..+.+.. +...++..+..|.+.-..+
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kG--v~~~k~~~~~g~lv~~~~v~-~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQG--VIGIQTTERNGKLVRAVLLG-STDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGGSCCBCTTSCC--EESSCCCTTTCSEEEEEEEC-TTCEEEEEETTCCEEEEEG
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcc--eEEEEecCCCCcEEEEEEeC-CCceEEEEcCCCeEEEeeH
Confidence 4567888999999999888754443321110 00011112234555554443 3345555566776665554
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.25 E-value=4.6 Score=51.52 Aligned_cols=41 Identities=22% Similarity=0.050 Sum_probs=34.1
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCC
Q 001157 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1135)
Q Consensus 1018 ~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~ 1058 (1135)
..+.+++..++..+|++-+.|++++||++.+++++......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 34556677788999999999999999999999998876543
No 374
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=46.41 E-value=78 Score=32.84 Aligned_cols=112 Identities=13% Similarity=0.239 Sum_probs=61.3
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccccccCHHHHHHHH
Q 001157 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKD-LKVFSSFNEELFKEIT 116 (1135)
Q Consensus 38 ~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~-~~~~~~~~~~~~~~l~ 116 (1135)
..+|++.|.+|+|.||.+.+..+ +.-++.+++.++|+.+|.+- +.=++.-+...-..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67899999999999998876544 11122334455555555442 1111122334445555
Q ss_pred HhhccccccchhhhcccCCchhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCC
Q 001157 117 QLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKN 188 (1135)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~ 188 (1135)
.++..- .+.. ...-..+++.+|. +|-+.+|++. | ....+++.+++|-...+.+
T Consensus 77 ~llvev-~~~~----~~~~~~~~~~rl~-~l~~~~p~~~------------~-~r~~fi~~ai~WS~~~g~~ 129 (312)
T 2wpv_A 77 FYLLEV-YDLA----EVKVDDISVARLV-RLIAELDPSE------------P-NLKDVITGMNNWSIKFSEY 129 (312)
T ss_dssp HHHHHH-HHHT----TCCCSHHHHHHHH-HHHTTCCTTC------------T-THHHHHHHHHHHHHHTSSC
T ss_pred HHHHHH-HHHc----CCCCCHHHHHHHH-HHHHHCCCCC------------c-hHHHHHHHHHHHHhhcCCC
Confidence 544421 1111 1112355666666 4444555522 2 3588999999998775443
No 375
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=45.28 E-value=18 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001157 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1135)
Q Consensus 7 ev~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1135)
-+.-||-.||.=+||+-|+..++-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 36789999999999999999999999986
No 376
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=44.71 E-value=77 Score=27.36 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=50.9
Q ss_pred HhhhhcchHHHHHHHHHhcCCCcc-HH----HHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcC
Q 001157 14 QFLDEEKFKETVHKLEQESGFFFN-MK----HFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQ 88 (1135)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-~~----~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~ 88 (1135)
.|++..-|.++...+++=-.+..+ .. .=.-....|+|++|+..+.+....+... .. . +.-+-.. +...|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a-~~~lg~~---~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-G-YIRKAAC---LVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH---HHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-H-HHHHHHH---HHHCC
Confidence 455555677777777654322222 11 1122345688888888776643332221 11 1 2222222 34468
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 001157 89 DRAKAVEILVKDLKVFSSFNEELFKEITQLL 119 (1135)
Q Consensus 89 ~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l 119 (1135)
+..+|+..+++.+.-- ..+.+-...|..+|
T Consensus 96 ~~~~A~~~~~~al~l~-P~~~~a~~~l~~~l 125 (126)
T 4gco_A 96 EWSKAQRAYEDALQVD-PSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHC-cCCHHHHHHHHHhc
Confidence 8888888888754422 22455555555544
No 377
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=42.93 E-value=3.1e+02 Score=28.54 Aligned_cols=240 Identities=8% Similarity=0.038 Sum_probs=122.2
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCce----EEEEeeCCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc---------ce
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFK----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---------DE 915 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------~~ 915 (1135)
|+..++++.+ +|.|+--.+...+ .-..++ ..+.+..+.... ....|+..+..|.++-..... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4555666666 7888766544211 001122 223444554444 556777788889877665432 33
Q ss_pred EeEe---ecCccCceEEEEEcCC---CCeEEEEcCCCcEEEEeCCCccccc----ceeeecCCCCCCCCCCceeEEEC-C
Q 001157 916 VKTK---LKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLK----SRFIQAPAGRQSPLVGETKVQFH-N 984 (1135)
Q Consensus 916 ~~~~---l~~h~~~i~~l~~s~d---~~~l~s~~~D~~i~iWd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~fs-p 984 (1135)
.+.. +. ....|.++..-++ +.+++.++.+|.++--.+....... ...+....+ +.+..+... .
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2222 22 2234665543333 5689999999999999886543221 111111111 344444443 3
Q ss_pred CCcEEEEEECCcEEEEec-cCCc-------ccccCCCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEecCCCceeecc
Q 001157 985 DQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLRFRCRI 1055 (1135)
Q Consensus 985 dg~~l~~~~d~~i~vwd~-~~~~-------~~~~~~~~~h~~~i~~~~~s~dg~-~l~s~~~dg~V~vwd~~~~~~~~~~ 1055 (1135)
+...++++.+|.+..+.. .-.. +..+.. .-...|.++..-+++. .|++.+..|..+..++.......+-
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg 232 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRA 232 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTT
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe--CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCC
Confidence 444555578888888776 2111 111111 1145677765544455 7778888999888777653222221
Q ss_pred CCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCCcEEEEecC
Q 001157 1056 GPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg~i~lW~~~ 1101 (1135)
......+ .........+..+.... ++..++..+..|.+....++
T Consensus 233 ~kGv~~~-~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 233 KRGVVIL-RELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp SCCEECS-CCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGG
T ss_pred CCCEECe-eecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhh
Confidence 1000000 00111122344332222 33456666777877666664
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=42.50 E-value=3.2e+02 Score=28.52 Aligned_cols=207 Identities=10% Similarity=0.033 Sum_probs=109.5
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEE---ccc------ceEeEe---ecCccCceEEEEEcC---CCCeEEEEcCCCc
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYN---VRV------DEVKTK---LKGHQNRITGLAFSP---TLNALVSSGADAQ 947 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd---~~~------~~~~~~---l~~h~~~i~~l~~s~---d~~~l~s~~~D~~ 947 (1135)
.+..+.... ....|+.-+..|.++-.. +.. |..+.. +. ....|.++..-+ +..+++.++.+|.
T Consensus 43 ~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 43 IVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred EEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 344444333 445566666777666544 332 232222 22 234565554433 5789999999999
Q ss_pred EEEEeCCCcccccc---eeeecCCCCCCCCCCceeEEEC-CCCcEEEEEECCcEEEEecc--CC--------cccccCCC
Q 001157 948 LCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFH-NDQTHLLVVHESQISVYDSK--LE--------CSRSWSPK 1013 (1135)
Q Consensus 948 i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fs-pdg~~l~~~~d~~i~vwd~~--~~--------~~~~~~~~ 1013 (1135)
++--.+........ ..+....+ +.+..+... .+...++.+..|.+..+... .- -+..+..
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke~-----D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L- 194 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRDN-----DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF- 194 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCTT-----CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-
T ss_pred EEEeEHHHhhccccCceEEEEECCC-----CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-
Confidence 99998876442211 11111111 344444443 44444455778877666543 11 1111111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCccccCCCCCCcEEEeeCCCCCCEEEEEecCC
Q 001157 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1014 ~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~Dg 1093 (1135)
.....|.++...+++..|+..+..|.++.-.+.......+-... ............+..+.... +...++..+.+|
T Consensus 195 -~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G--~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G 270 (327)
T 3uc1_A 195 -NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG--VLTVMYDRRRGRLVGALIVD-DDSELYAVTSGG 270 (327)
T ss_dssp -CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--EESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGG
T ss_pred -CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc--EEEEEecCCCCeEEEEEEeC-CCccEEEEcCCC
Confidence 12566888777777778888999999998887654433221000 00000111123455554443 445666677888
Q ss_pred cEEEEecC
Q 001157 1094 AVHVVEPS 1101 (1135)
Q Consensus 1094 ~i~lW~~~ 1101 (1135)
.+..++.+
T Consensus 271 ~~ir~~~~ 278 (327)
T 3uc1_A 271 GVIRTAAR 278 (327)
T ss_dssp CEEEEEGG
T ss_pred eEEEEehh
Confidence 88777764
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=41.04 E-value=88 Score=35.92 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCCEEEEEeeCC--------CCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 543 WCTMMAYSADGTRLFSCGTSK--------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~--------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
..-.|+|+|.|++++.--.+. .+...+.+.+..+++..+-+.+.....++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 457889999999665432110 1235677778888998888888877789999999999888764
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.31 E-value=1.1e+02 Score=35.84 Aligned_cols=78 Identities=8% Similarity=0.006 Sum_probs=46.5
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCcccCcc---ccCC--CCCCcEEEeeCCCCCCEEEEEe--c
Q 001157 1019 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY---AVSS--NTAHPLVIAPHPSEPNQIALGM--S 1091 (1135)
Q Consensus 1019 ~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~sp~~~~~l~s~~--~ 1091 (1135)
.|.++. .+..+|++-+.|+++|+|++.+++++...... ..+.. ...+ ..+..+.+. ++++++=+ .
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~-~~~~~~~s~L~~~~~~~~~Lrl~-----~~~lv~y~P~~ 294 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDMV-SQSDSDPSHFRKVEAVGEYLSLY-----NNTLVTLLPLE 294 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEETT-TTSCCCSSCCCCCCSCCCCEEES-----SSEEEEEETTT
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeeccc-cCccccccccCcccCcchhHhhe-----eeEEEEEecCC
Confidence 355444 45789999999999999999999988776542 11200 0111 112222221 14555433 5
Q ss_pred CCcEEEEecCCCc
Q 001157 1092 DGAVHVVEPSDAE 1104 (1135)
Q Consensus 1092 Dg~i~lW~~~~~~ 1104 (1135)
.|..++|++....
T Consensus 295 ~G~Fk~~~l~~~~ 307 (729)
T 3f7f_A 295 NGLFQMGTLLVDS 307 (729)
T ss_dssp TCEEEEEEEEC--
T ss_pred CCeEEEEEEEEcC
Confidence 6799999996544
No 381
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=39.50 E-value=1.6e+02 Score=24.70 Aligned_cols=90 Identities=8% Similarity=-0.028 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHH
Q 001157 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1135)
Q Consensus 7 ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 81 (1135)
....+-..++...-|.++...+++=.....+ ...-.-....|+|++|+..+.+........ .. + +..+-..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~-~~~la~~- 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IK-G-YTRKAAA- 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hH-H-HHHHHHH-
Confidence 3455566666677788888888775544332 111122356789999888876653332221 11 1 1112222
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 001157 82 LEALDRQDRAKAVEILVKDLK 102 (1135)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~ 102 (1135)
+...|+..+|+..+++.+.
T Consensus 94 --~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 --LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHHH
Confidence 3346888888888887543
No 382
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.08 E-value=3.5e+02 Score=28.09 Aligned_cols=206 Identities=7% Similarity=-0.011 Sum_probs=101.3
Q ss_pred CCCeeEEEeecCCCEEEEE-eCCeEEEEe---CCC------ceEEEEe-e-CCCCCeeEEEEeCC--CCcEEEEEeCCcc
Q 001157 840 EESAACIALSKNDSYVMSA-SGGKVSLFN---MMT------FKVMTMF-M-SPPPAATFLAFHPQ--DNNIIAIGMEDSS 905 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~-sdg~i~iwd---~~~------~~~~~~~-~-~~~~~v~~l~~sp~--~~~~lasg~~dg~ 905 (1135)
...+..+........|+.. +.|.+.-+. +.. |..+..+ . .....|.++..-++ ++.+++.++.+|.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 4455555544444444444 477755444 332 2221111 1 12345665543331 2567889999999
Q ss_pred EEEEEcccce--------EeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCccccc--ceeeecCCCCCCCCC
Q 001157 906 VQIYNVRVDE--------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLV 975 (1135)
Q Consensus 906 v~iwd~~~~~--------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~ 975 (1135)
++--.+.... ....+..- +.+..+....+...|+..+.+|.+..++...-.... ..-.....-. ...
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~--~~d 194 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK--EGD 194 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC--TTC
T ss_pred EEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC--CCC
Confidence 9998875322 11223322 556666555556678888889988888775421110 0001111100 113
Q ss_pred CceeEEECCCCc--EEEEEECCcEEEEeccC--------CcccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001157 976 GETKVQFHNDQT--HLLVVHESQISVYDSKL--------ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1135)
Q Consensus 976 ~v~~~~fspdg~--~l~~~~d~~i~vwd~~~--------~~~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd 1045 (1135)
.|..+..-+++. .++++..|..+..++.. +-+............+..+....++..++..+..|.+....
T Consensus 195 ~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~ 274 (323)
T 1wp5_A 195 YIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIK 274 (323)
T ss_dssp CEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEE
Confidence 455554333343 44446777777766621 11111111111122454443333344555666777776666
Q ss_pred cCC
Q 001157 1046 AET 1048 (1135)
Q Consensus 1046 ~~~ 1048 (1135)
+..
T Consensus 275 ~~~ 277 (323)
T 1wp5_A 275 VGD 277 (323)
T ss_dssp GGG
T ss_pred hhh
Confidence 654
No 383
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=38.62 E-value=3.5e+02 Score=27.93 Aligned_cols=194 Identities=9% Similarity=0.071 Sum_probs=107.5
Q ss_pred cCCCEEEEEe-CCeEEEEeCCCceE-------EEEee-CCCCCeeEEEEeCCCCcEEEEEeCCccEEEEEccc-------
Q 001157 850 KNDSYVMSAS-GGKVSLFNMMTFKV-------MTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------- 913 (1135)
Q Consensus 850 ~dg~~la~~s-dg~i~iwd~~~~~~-------~~~~~-~~~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------- 913 (1135)
++..++++.+ +|.|+-..+...+. +..+. ...+.+..+.... ....++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3556677777 78888776654321 11111 1223455555554 456777888999887776542
Q ss_pred --ceEe---EeecCccCceEEEEEcC---CCCeEEEEcCCCcEEEEeCCCccccc--ceeeecCCCCCCCCCCceeEEEC
Q 001157 914 --DEVK---TKLKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLVGETKVQFH 983 (1135)
Q Consensus 914 --~~~~---~~l~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~fs 983 (1135)
|..+ -.+. ....|.++...+ +..+|+.++..|.++.-.+....... ....-.+.. .+.+..+...
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~----~d~lv~~~~~ 159 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND----KDFVTSAEIV 159 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT----TCCEEEEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC----CCEEEEEEEe
Confidence 1111 1122 223455554433 46788889999999998886543211 111111111 1345555444
Q ss_pred -CCCcEEEEEECCcEEEEec-cCCc-------ccccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCce
Q 001157 984 -NDQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1135)
Q Consensus 984 -pdg~~l~~~~d~~i~vwd~-~~~~-------~~~~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~ 1051 (1135)
++...++++.+|.+..+.. .-.. +..+... ....|.++....++..|++.+..|..+..++.....
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~ 234 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISE 234 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCB
T ss_pred CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcc
Confidence 4444555588888888877 2111 1111111 145677776666677788889999999998875433
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.97 E-value=5.9e+02 Score=30.40 Aligned_cols=158 Identities=13% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCeeEEEeecCCCeEEEEEeCCCcEEEEEcCCccccccccceeecccccccccccccccccCCCeeEEEEcCC-CCEEE
Q 001157 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1135)
Q Consensus 346 ~~~V~~~~fspdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~la 424 (1135)
.+.|.+++++|....++.+++..+.|...+ +.|+. |..-... ... -.-....|.+|++.|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~t--------W~~~~~~--~~~--~~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSK--------WIPLNDF--IEA--QDMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTE--------EEESCTT--CCG--GGGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCC--------eeECccC--CCc--ccccCCceeEEEECCCCCCEEE
Confidence 458999999997544556666667654443 22321 2110000 000 0002346999999984 34444
Q ss_pred EEeCCCe----EEEE-EcCCCCceeeeeE-ee--c---CCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcCC-CeeEEE
Q 001157 425 VAFSKHI----VHLY-TYNPTGELRQHLE-ID--A---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYT 492 (1135)
Q Consensus 425 ~~~~dg~----i~iw-d~~~~~~~~~~~~-~~--~---h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 492 (1135)
++..+.. -.|| ..+.|+....... +. + ....+..+++.|.... .++.+...+. ||--.+ |+.-..
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~g--l~~S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEG--IWKSSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSC--EEEESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCC--EEEECCCCcccCC
Confidence 4433211 2334 3444544432211 00 0 0113567888876443 4555554443 333333 333222
Q ss_pred ecC------CCCCeEEEEeccCCCccEEEEEEcC
Q 001157 493 FEG------HEAPVYSVCPHHKESIQFIFSTAID 520 (1135)
Q Consensus 493 l~~------h~~~v~~l~~~~~~~~~~l~s~s~d 520 (1135)
+.. ....+..+.++|... ..++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 221 124578888887644 345555544
No 385
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=37.55 E-value=2.2e+02 Score=25.22 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCCcc--HH---HHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 001157 21 FKETVHKLEQESGFFFN--MK---HFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVE 95 (1135)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~~---~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~ 95 (1135)
+.++...+++-.....+ +. .=+-....|+|++|+..+.+.....+.. . ..+..+-..| ...|+..+|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~--~a~~~lg~~~---~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-P--KAHRFLGLLY---ELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H--HHHHHHHHHH---HHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H--HHHHHHHHHH---HHcCchHHHHH
Confidence 45555666654443332 11 1122467799999999998764443322 1 1122223333 34799999999
Q ss_pred HHHhhcccccccCHHHHHHHHHhhcc
Q 001157 96 ILVKDLKVFSSFNEELFKEITQLLTL 121 (1135)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~l~~ 121 (1135)
.+++.+.-- ..+.+-+..|+.++..
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999865422 3367778888877654
No 386
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=37.50 E-value=1.2e+02 Score=31.74 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=59.6
Q ss_pred HHHHHHHhhcccH---HHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-cccccccCHHHHH
Q 001157 38 MKHFEDQVQAGEW---DEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKD-LKVFSSFNEELFK 113 (1135)
Q Consensus 38 ~~~l~~~i~~g~w---~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~-~~~~~~~~~~~~~ 113 (1135)
+.+|++.|.+|+| .||.+.+..+ - .+ ++..++.++|+.+|.+- +.=++.-+...-.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi------~----~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV------A----AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH------H----HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH------H----HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6789999999999 9998866544 0 11 22334444455544432 1111122334444
Q ss_pred HHHHhhccccccchhhhcccCCchhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCC
Q 001157 114 EITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKN 188 (1135)
Q Consensus 114 ~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~ 188 (1135)
.|+.++.. -.+..+ ..-...++.+|.+-+. .+|++ .| ....+|+.+++|-.....+
T Consensus 76 DL~~llve-vy~~~~----~~~~~~~~~rL~~L~~-~~~~~------------~p-~r~~fi~~ai~WS~~~g~~ 131 (336)
T 3lpz_A 76 DLAVLLVD-TFRQAG----QRVDGASRGKLLGCLR-LFQPG------------EP-VRKRFVKEMIDWSKKFGDY 131 (336)
T ss_dssp HHHHHHHH-HHHHHT----CCCCHHHHHHHHHHHT-TSCTT------------CH-HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHH-HHHHcC----CCCCHHHHHHHHHHHH-hCCCC------------Cc-HHHHHHHHHHHHHhhcCCC
Confidence 55554442 111111 1123455666655554 44442 13 3488999999999764433
No 387
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.17 E-value=89 Score=36.53 Aligned_cols=37 Identities=5% Similarity=0.140 Sum_probs=29.8
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccceEeEeecC
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 922 (1135)
.|.++.+ +..+|++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 457999999999999999999998887554
No 388
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.88 E-value=1.6e+02 Score=33.37 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=46.5
Q ss_pred CeEEEEEEcCCCCEEEEEeeC--------CCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCCEEEEE
Q 001157 542 NWCTMMAYSADGTRLFSCGTS--------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1135)
.....|+|.++|.+.+..-.. ..+...++.++..+++....+.+.....++.++|+||++.|++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 356789999999877743211 01233688888888887777765544468999999999988875
No 389
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=33.58 E-value=4.1e+02 Score=27.28 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=95.0
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceee------eeEeecCCCCeeEEEEecCCCceEEEEEcCCCcEEEEEcC------
Q 001157 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------ 485 (1135)
Q Consensus 418 pdg~~la~~~~dg~i~iwd~~~~~~~~~------~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~------ 485 (1135)
|+...+++.+.+|.|+--.+..-+..+. ...+.. .+.+..+....... .|+..+..|.++-....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556788888999888766543211110 001111 22333443443444 45555666765555432
Q ss_pred ---CCeeEE---EecCCCCCeEEEEecc-CCCccEEEEEEcCCeEEEEeCCCCCc-----eE--EecCCCCeEEEEEEcC
Q 001157 486 ---AGRKQY---TFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGS-----RV--DYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 486 ---~~~~~~---~l~~h~~~v~~l~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~--~~~~~~~~v~~~~~s~ 551 (1135)
.|..+. .+. ....|.++.... ..+..+++..+.+|.++...+..... .. .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 122211 122 334566554322 12336899999999999987642211 11 22222 4444444444
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCC----C---ceeEEeecccCCceeEEEEeCCCCEEEEEecCCeEEEEECC
Q 001157 552 DGTRLFSCGTSKEGESHLVEWNESE----G---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~----~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
+...++..+. .|.+..++... + .-+.-+.-..+..|..+....++..+++.+..|.++..++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555442 56666666532 1 11111222222245555544556678888899998888764
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=33.13 E-value=80 Score=36.25 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCeEEEEcCC------------CcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEE
Q 001157 927 ITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1135)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1135)
.-.|+|+|.|.+++.-..+ ..+.+.+..+++. ..++..+.+ .+++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~--~rf~~~P~g-----aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI--RRFMVGPIG-----CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE--EEEEECCTT-----CEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE--EEEEeCCCC-----ccCcCeeECCCCCEEEEE
Confidence 4568999999877765432 2244445555553 234444443 689999999999988773
No 391
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=32.57 E-value=56 Score=28.74 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHhhhhcchH-HHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHhcCCCccc--ccchhhHHHHHHH--
Q 001157 3 SLSRELVFLILQFLDEEKFK-ETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVE--DNRYSMKIFFEIR-- 77 (1135)
Q Consensus 3 ~~~~ev~rli~q~L~~~g~~-~s~~~L~~Esg~~~~~~~l~~~i~~g~w~~~~~~l~~l~~~~--~~~~~~~~~~~l~-- 77 (1135)
-...++...|+..|.+.||- .+...+.++-|+..+ ++..|++.++.|.+.. ...+..-++.-+.
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 34567889999999999984 455666666665442 2344555555554331 1122221111111
Q ss_pred -------HHHHHH-HHhcCCHH-HHHHHHHhhccc
Q 001157 78 -------KQKYLE-ALDRQDRA-KAVEILVKDLKV 103 (1135)
Q Consensus 78 -------~~~~lE-ll~~~~~~-~A~~~l~~~~~~ 103 (1135)
-..+|| +|.++++. +|+.++| .|.|
T Consensus 88 ~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P 121 (130)
T 2k9m_A 88 YPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRL 121 (130)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCS
T ss_pred chhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCC
Confidence 124667 77776644 4666665 4444
No 392
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.36 E-value=2.8e+02 Score=28.13 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhhhhcc-hHHHHHHHHH--hcCCCc-c--HHHH--HHHhhcccHHHHHHHhcCCCcccccchhhHHHHHH
Q 001157 5 SRELVFLILQFLDEEK-FKETVHKLEQ--ESGFFF-N--MKHF--EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEI 76 (1135)
Q Consensus 5 ~~ev~rli~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~~~l--~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l 76 (1135)
.-+.++++.+++...| +.++.+.|++ +.++.. + ...+ .-....|++++|+..+.+ +.. .. + +..
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~--~~-~-~~~ 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS--LE-C-MAM 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS--HH-H-HHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC--HH-H-HHH
Confidence 3456778888888887 7778887776 333322 2 2111 234577999999998877 111 11 1 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc
Q 001157 77 RKQKYLEALDRQDRAKAVEILVKDL 101 (1135)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~ 101 (1135)
.-+. ++..|+..+|+..+++.+
T Consensus 136 l~~~---~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 136 TVQI---LLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHHH---HHHCCCHHHHHHHHHHHH
Confidence 2222 345788888888888753
No 393
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=31.34 E-value=5.2e+02 Score=27.75 Aligned_cols=204 Identities=11% Similarity=-0.003 Sum_probs=99.2
Q ss_pred CeeEEEEeCCCCcEEEEEeCCccEEEEEcccc-e----------EeEeecCc-cCceEEEEEcCCCCeEEEEcCCCcEEE
Q 001157 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 950 (1135)
Q Consensus 883 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1135)
.|..|+- +....+..+.||.|+.|-.... + ....+... ...|..++.. ..+.+....||.|+.
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEE
Confidence 5666665 3456666788999999975431 1 11112211 2256666654 345555668999999
Q ss_pred EeCCCccccc------ceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCcccc-----------cCC
Q 001157 951 WSIDKWEKLK------SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRS-----------WSP 1012 (1135)
Q Consensus 951 Wd~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~~-----------~~~ 1012 (1135)
|-......+. ........... ...+..++... ...++...++.|..|-. ....+.. ...
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 273 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA 273 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecc
Confidence 9754322110 00001111000 02344444322 22334467888888875 2211110 000
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCC-CcccCccccCCCCCCcEEEeeCCCCCCEEEEEec
Q 001157 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP-SAYIPTYAVSSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1013 ~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~s~~~ 1091 (1135)
. ....|..++-. ..+.++-..||.|+.|-....-++..-.. ....|..........+..++. +....++-+.
T Consensus 274 ~--~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~alt~ 346 (406)
T 4d9s_A 274 L--SNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLAVTE 346 (406)
T ss_dssp G--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEEEET
T ss_pred c--CCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEEEeC
Confidence 0 02346555543 33445556899999997654322211000 000111100011234555554 3455666678
Q ss_pred CCcEEEEecC
Q 001157 1092 DGAVHVVEPS 1101 (1135)
Q Consensus 1092 Dg~i~lW~~~ 1101 (1135)
||.|..|--.
T Consensus 347 ~G~v~~wG~n 356 (406)
T 4d9s_A 347 RNNVFAWGRG 356 (406)
T ss_dssp TSCEEEEECC
T ss_pred CCCEEEecCC
Confidence 9999999874
No 394
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=28.78 E-value=2.1e+02 Score=29.06 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=54.8
Q ss_pred HHHHhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHH
Q 001157 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEAL 85 (1135)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll 85 (1135)
+-..++....|.++...+++=-....+ ...-+-.+..|++++|+..+.++....... ....-..-++++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~~~~~~~l~ 196 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------RYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------HHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------HHHHHHHHHHHH
Confidence 333444555566666666543322222 222233456788888888888774443221 112223334455
Q ss_pred hcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 001157 86 DRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121 (1135)
Q Consensus 86 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 121 (1135)
..++..+|+..|++.+.-. ..+.+-+..|+.++..
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 5666667777777654432 2345555666655543
No 395
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.75 E-value=1.8e+02 Score=29.68 Aligned_cols=105 Identities=9% Similarity=0.096 Sum_probs=56.5
Q ss_pred HHHHHHHH-hhhhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHH
Q 001157 7 ELVFLILQ-FLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLE 83 (1135)
Q Consensus 7 ev~rli~q-~L~~~g~~~s~~~L~~Esg~~~~--~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lE 83 (1135)
++..++.+ ++...-|.++...|++ +-..+ ...-.-....|++++|+..+..+....+.. ..+.+. ..++.
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~~~ 174 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAWVS 174 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHHHH
Confidence 34333334 4444458888888887 22223 222233457799999999988764433221 212111 22333
Q ss_pred HH-hcCCHHHHHHHHHhhcccccccCHHHHHHHHHhh
Q 001157 84 AL-DRQDRAKAVEILVKDLKVFSSFNEELFKEITQLL 119 (1135)
Q Consensus 84 ll-~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l 119 (1135)
++ ..|+.++|+.++++-+... ..+..-+..+..++
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACH 210 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 22 3477888888888755432 22445455554443
No 396
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=27.93 E-value=7e+02 Score=28.14 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=96.6
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEe-cCCCCCeEEEEeccCCCccEEEEEEcCC----eEEEEeCCC
Q 001157 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDY 530 (1135)
Q Consensus 456 v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~~~l~s~s~dg----~i~~wd~~~ 530 (1135)
..-..+.-||+. -|+.|+ .++| .+|+.+.+. .+|...+....|.|+..|.-++.+..++ -..+.|..+
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CEEECCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CeeEeCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 344556667766 455454 1344 455555543 3788888888899887777788877652 345578888
Q ss_pred CCceEEecCC--CCeEEEEEEcCCCC--EEEEEeeCCCCCceEEEEeCCCCceeEEeecccCCceeEEEEeCCCC-EEEE
Q 001157 531 LGSRVDYDAP--GNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLA 605 (1135)
Q Consensus 531 ~~~~~~~~~~--~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 605 (1135)
++.+...... .+......|.|+.. .+.+ . -.+++. +|+.+.... ....-..+-|..|.. .++-
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~--------~~l~~~-~G~~i~~~~--p~~~N~~i~WdGDl~relld 468 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N--------GSLYSA-KGVKIGSGV--PSSTNFGIWWDGDLLREQLD 468 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T--------TEEECT-TSCBCSSCC--CSCCSEEECCSSSSSCEEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe-c--------CceECC-CCCEecCCC--CCCcceeEEECCCCcHhhhC
Confidence 8877766543 22333333444322 2222 0 024443 234333211 110122466777763 3443
Q ss_pred EecCCeEEEEECCCCeeeEEEeCCC-----CCCCcCeEEEe--cCC--CEEEEEeCCCcEEEEECC
Q 001157 606 AGDEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFN--KEG--SLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s--~~~--~~l~~~~~dg~v~iw~~~ 662 (1135)
.+.|.-|+...++....+...+ +...-.++... -|. ++|.-...+..++||...
T Consensus 469 ---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 469 ---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp ---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred ---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 3478889988777444444321 11122233332 232 234434455679999764
No 397
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=27.53 E-value=34 Score=27.54 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHhhhhc
Q 001157 1 MSSLSRELVFLILQFLDEE 19 (1135)
Q Consensus 1 ~~~~~~ev~rli~q~L~~~ 19 (1135)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999864
No 398
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=27.03 E-value=7.2e+02 Score=28.02 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=32.2
Q ss_pred CceeEEee-cccCCceeEEEEeCCC--CEEEEEecCC----eEEEEECCCCeeeEEEeCC
Q 001157 577 GAIKRTYS-GFRKRSLGVVQFDTTR--NRFLAAGDEF----QIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 577 ~~~~~~~~-~~~~~~v~~~~~s~~~--~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~ 629 (1135)
|+.+.... +|.+ .+....|.|+. ..++.+.+++ -..+.|..+++.+......
T Consensus 352 G~~L~st~~gHGD-a~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 352 GKGMYSTGLGHGD-ALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp SCEEEECSCCCCS-CEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCEeeeCCCCCCC-eeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 44444433 4444 66777788874 4566655541 3556899999998877654
No 399
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.02 E-value=2.2e+02 Score=32.37 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCeeEEEeecCCCEEEEEe-C------------CeEEEEeCCCceEEEEeeCCC-CCeeEEEEeCCCCcEEEEE
Q 001157 841 ESAACIALSKNDSYVMSAS-G------------GKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIG 900 (1135)
Q Consensus 841 ~~v~~l~~s~dg~~la~~s-d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~lasg 900 (1135)
.....|+|+++|.+.+..+ . +.+..++..++++.+.+.++. ..++.++|+| |++.|.+.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 4467899999998777432 1 257777887888777676543 5689999999 77766554
No 400
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=26.54 E-value=6.6e+02 Score=27.44 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=37.4
Q ss_pred cCccccccccccccccccCccc--CCCceeEEEcCCC--CCCCceEEEEEeCC--------cceeeeecccceeEEEee
Q 001157 735 DVKPRVAEDVDKIKSWRIPDIS--DPSQIKALRLPDS--IAASKVVRLIYTNS--------GLSLLALASNAVHKLWKW 801 (1135)
Q Consensus 735 ~~~~~~~~~~~~i~~w~~~~~~--~~~~~~~~~~~~~--~~~~~i~~~~~s~~--------g~~l~~~~~dg~i~iw~~ 801 (1135)
...+...-....+.+|++.... ....|+.+.+|.. .+.....++...+. .--+++....|.|+.|.-
T Consensus 47 ~~GyAlvv~~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsptG~VryWes 125 (450)
T 1xks_A 47 EGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPS 125 (450)
T ss_dssp TTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECTTCEEEEESC
T ss_pred CCcEEEEEeCCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcCCccEEEccc
Confidence 4445555566789999987652 2246667777753 22232334332222 112444444999999953
No 401
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=26.35 E-value=2.5e+02 Score=22.54 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHH
Q 001157 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYL 82 (1135)
Q Consensus 8 v~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~l 82 (1135)
...+...++....|.++...+++=-....+ ...-.-....|+|++|+..+.......... .. ..+ .+-..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~-~~a~~-- 81 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GK-GYS-RKAAA-- 81 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHH--
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HH-HHH-HHHHH--
Confidence 445555666666677777777653322221 111122345688888888776653332221 11 111 11122
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001157 83 EALDRQDRAKAVEILVKDLK 102 (1135)
Q Consensus 83 Ell~~~~~~~A~~~l~~~~~ 102 (1135)
+...|+..+|+..+++.+.
T Consensus 82 -~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 -LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp -HHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHhhHHHHHHHHHHHHH
Confidence 3346888888888877544
No 402
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=25.34 E-value=2.8e+02 Score=23.33 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=30.5
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec
Q 001157 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1135)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~ 1002 (1135)
..+.+..||.+++... ++ +|...+... .....+.+..||.+++...++.+.+|..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 4566677777666432 22 777554210 1124567788888776644444446643
No 403
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.19 E-value=5.7e+02 Score=26.24 Aligned_cols=157 Identities=9% Similarity=0.018 Sum_probs=85.7
Q ss_pred CCCeeEEEeecCCCEEEEEe-CCeEEEEeCC---CceEEE---------EeeCCCCCeeEEEEeCC--CCcEEEEEeCCc
Q 001157 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMM---TFKVMT---------MFMSPPPAATFLAFHPQ--DNNIIAIGMEDS 904 (1135)
Q Consensus 840 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~---~~~~~~---------~~~~~~~~v~~l~~sp~--~~~~lasg~~dg 904 (1135)
...+..+........++..+ .|.++-+... ...... .+. ....|.++...++ +..+|+..+.+|
T Consensus 46 ~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G 124 (312)
T 1suu_A 46 GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASG 124 (312)
T ss_dssp TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCC
Confidence 44555555554445555555 7876655543 221100 122 2344555543321 356788899999
Q ss_pred cEEEEEcccc-------eEeEeecCccCceEEEEEcCCCCeEEEEcCCCcEEEEeCCCcccc----cceeeecCCCCCCC
Q 001157 905 SVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL----KSRFIQAPAGRQSP 973 (1135)
Q Consensus 905 ~v~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~----~~~~~~~~~~~~~~ 973 (1135)
.++--.+... .....+.. .+.+..+....++..++..+.+|.+..+....-... .....-.+..
T Consensus 125 ~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~---- 199 (312)
T 1suu_A 125 KIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE---- 199 (312)
T ss_dssp EEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT----
T ss_pred eEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC----
Confidence 9999887532 22223443 456666666655677888999999988887642111 1111111111
Q ss_pred CCCceeEEECCCCcEEEE-EECCcEEEEec
Q 001157 974 LVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1135)
Q Consensus 974 ~~~v~~~~fspdg~~l~~-~~d~~i~vwd~ 1002 (1135)
...|..+..-.++..+++ +..|..+...+
T Consensus 200 ~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 200 GDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp TCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 134556555444554444 77888888877
No 404
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.43 E-value=45 Score=19.24 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhh
Q 001157 6 RELVFLILQFLDE 18 (1135)
Q Consensus 6 ~ev~rli~q~L~~ 18 (1135)
+||++||-||-..
T Consensus 5 kDvlql~qQy~qs 17 (26)
T 1kdl_A 5 KDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 6888888887654
No 405
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.18 E-value=3e+02 Score=30.82 Aligned_cols=74 Identities=9% Similarity=0.011 Sum_probs=34.9
Q ss_pred hHHHHHHHH--HhcCCCcc----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHHhcCCHHHHH
Q 001157 21 FKETVHKLE--QESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAV 94 (1135)
Q Consensus 21 ~~~s~~~L~--~Esg~~~~----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll~~~~~~~A~ 94 (1135)
+.++.+.|+ ++.|+..+ -..+......|++++|+.++..+.... ..+....|-..-..| ...|+.++|.
T Consensus 121 ~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G--~~Pd~~ty~~Li~~~---~~~g~~d~A~ 195 (501)
T 4g26_A 121 PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE--VVPEEPELAALLKVS---MDTKNADKVY 195 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHH---HHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHH---hhCCCHHHHH
Confidence 444444443 34565555 223344455666666666665542221 112223343333332 2356666666
Q ss_pred HHHHh
Q 001157 95 EILVK 99 (1135)
Q Consensus 95 ~~l~~ 99 (1135)
.+|++
T Consensus 196 ~ll~~ 200 (501)
T 4g26_A 196 KTLQR 200 (501)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 406
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.12 E-value=4.1e+02 Score=25.47 Aligned_cols=104 Identities=9% Similarity=0.104 Sum_probs=60.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccchhhhcccCCchhHHHHHHHH
Q 001157 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146 (1135)
Q Consensus 67 ~~~~~~~~~l~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 146 (1135)
.+-..+.-+|.+|-.+=.+++|++.+|..+|+..+..- ..+...-.+|..++...+. .+..+.++ |-..+++.
T Consensus 107 ~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~-~s~~kLr~kL~~II~~Kd~-~H~~lqnF-----Sy~~~~~k 179 (235)
T 3bu8_A 107 AVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD-PTTQKLRNDLLNIIREKNL-AHPVIQNF-----SYETFQQK 179 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC-GGGHHHHHHHHHHHHHTCT-TSHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC-CCchHHHHHHHHHHhccCc-ccHHHHhc-----cHHHHHHH
Confidence 44556888999999999999999999999999877753 1122233566777665432 22222211 22444555
Q ss_pred HHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCCC
Q 001157 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1135)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~ 189 (1135)
+.+++....= .++. -||..|.+.+.++|...
T Consensus 180 i~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~~ 210 (235)
T 3bu8_A 180 MLRFLESHLD---------DAEP---YLLTMAKKALKSESAAS 210 (235)
T ss_dssp HHHHHHTTSC---------CCCC---HHHHHHHHHTTTC----
T ss_pred HHHHHHHHhc---------ccch---HHHHHHHHHHhhccccc
Confidence 5555443110 1122 46677777777777765
No 407
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.78 E-value=7.3e+02 Score=26.63 Aligned_cols=205 Identities=11% Similarity=-0.082 Sum_probs=97.9
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCccEEEEEc--c-cceE---------eEeecCccCceEEEEEcCCCCeEEEEcCCCcEE
Q 001157 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNV--R-VDEV---------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1135)
Q Consensus 882 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~--~-~~~~---------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1135)
..|..|+. +....+..+.||.|+.|-. . .+++ ..........|..|+... .+.+....||.|+
T Consensus 127 ~~i~~va~---G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~--~hs~alt~~G~v~ 201 (423)
T 3mvd_K 127 GKALCISA---GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA--DHLVILTTAGKVF 201 (423)
T ss_dssp SCEEEEEE---CSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS--SEEEEEETTSCEE
T ss_pred CCEEEEEc---CcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC--CeEEEEecCCeEE
Confidence 35666655 3456666788999999985 2 2221 111111233566666543 4555566789999
Q ss_pred EEeCCCcccccc--------------------eeeecCCCCCCCCCCceeEEECCCCcEEEEEECCcEEEEec-cCCccc
Q 001157 950 MWSIDKWEKLKS--------------------RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSR 1008 (1135)
Q Consensus 950 iWd~~~~~~~~~--------------------~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~i~vwd~-~~~~~~ 1008 (1135)
.|-.....++.. ..+.... ...|..++......+++...++.|..|-. ....+.
T Consensus 202 ~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~-----~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg 276 (423)
T 3mvd_K 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR-----AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLA 276 (423)
T ss_dssp EEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT-----CCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTS
T ss_pred EeeCCcCCccCCCcccccccccccccccccCCeEEeecC-----CccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCC
Confidence 997554322111 0011000 02344444332222222246788888875 211111
Q ss_pred c--------cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEecCCCceeeccCCCc--ccCccccCCCCCCcEEEee
Q 001157 1009 S--------WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSSNTAHPLVIAP 1078 (1135)
Q Consensus 1009 ~--------~~~~~~h~~~i~~~~~s~dg~~l~s~~~dg~V~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 1078 (1135)
. +.+.......|..|+.. ..+.++-..||.|+.|-....-.+..-.... ..|.. +..-...+..++.
T Consensus 277 ~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~-v~~l~~~v~~ia~ 353 (423)
T 3mvd_K 277 HETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTI-VKKLTEKIVSVGC 353 (423)
T ss_dssp SCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEE-CTTCCSCEEEEEE
T ss_pred CCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceE-eccCCCCEEEEEc
Confidence 1 00000002346555543 3344555679999999765432221100000 01111 1111125566654
Q ss_pred CCCCCCEEEEEecCCcEEEEecCC
Q 001157 1079 HPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1079 sp~~~~~l~s~~~Dg~i~lW~~~~ 1102 (1135)
- ...-+.-+.||.|+.|-...
T Consensus 354 G---~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 354 G---EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp E---TTEEEEEETTSCEEEEECCT
T ss_pred C---CCeEEEEcCCCCEEEECCCC
Confidence 3 34455557899999998654
No 408
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=22.76 E-value=67 Score=40.82 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=31.5
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEEcCCCeeEEEec
Q 001157 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 455 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~l~ 494 (1135)
.+.+++..++.. ++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455666777777 89999999999999999999988753
No 409
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=22.71 E-value=2.7e+02 Score=23.70 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=51.5
Q ss_pred HhhhhcchHHHHHHHHHhcCCCcc-HHHH----HHHhhcccHHHHHHHhcCCCcccccchh-hHHHHHHHHHHHHHHHhc
Q 001157 14 QFLDEEKFKETVHKLEQESGFFFN-MKHF----EDQVQAGEWDEVERYLCGFTKVEDNRYS-MKIFFEIRKQKYLEALDR 87 (1135)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-~~~l----~~~i~~g~w~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~~~lEll~~ 87 (1135)
.+++..-|.++...+++=-.+..+ ...+ .-....|+|++|+..+.+.......... ...+-.++-..=.-+...
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 345555678887777654333222 2111 1245679999998877654222111000 001111222222223456
Q ss_pred CCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001157 88 QDRAKAVEILVKDLKVFSSFNEELFKEIT 116 (1135)
Q Consensus 88 ~~~~~A~~~l~~~~~~~~~~~~~~~~~l~ 116 (1135)
++..+|+..+++.+.-. .+++...+|.
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~~l~ 123 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVKKVK 123 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHHHHH
Confidence 88999999888766532 2455555544
No 410
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=22.64 E-value=53 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc
Q 001157 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1135)
Q Consensus 6 ~ev~rli~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1135)
.++.+-|+++|++.| .++..|.+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467888899999999 899999999998774
No 411
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=22.54 E-value=12 Score=31.39 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCccHHHHHHHhhcccHHHHHHHhcCC
Q 001157 25 VHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60 (1135)
Q Consensus 25 ~~~L~~Esg~~~~~~~l~~~i~~g~w~~~~~~l~~l 60 (1135)
+..+-+|||+.+++..+-..| +|+||++++.++++
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 334445899999877776665 59999998877553
No 412
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=21.30 E-value=3.9e+02 Score=25.31 Aligned_cols=109 Identities=9% Similarity=-0.028 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhcchHHHHHHHHHhcCCCcc-H----HHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHH
Q 001157 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-M----KHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYL 82 (1135)
Q Consensus 8 v~rli~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~l 82 (1135)
...+-..++...-|.++...+++--....+ . ..=.-....|++++|+..+.+.....+.. .. . +..+-..|+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~-a-~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LG-G-YMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH-H-HHHHHHHHH
Confidence 445555666667788888888876665543 1 11122456899999999887754333222 11 1 222222232
Q ss_pred HH--------HhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001157 83 EA--------LDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120 (1135)
Q Consensus 83 El--------l~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~~l~ 120 (1135)
+. +..|+..+|+..+++.+.-- ..+.+-+..|..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYA 129 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 22 12288889999998864422 224455555555443
No 413
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.26 E-value=2.9e+02 Score=23.02 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=48.0
Q ss_pred HHHHHHhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHH
Q 001157 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLE 83 (1135)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lE 83 (1135)
..+-..+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+........ .. . +..+-..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~-~~~lg~~--- 81 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VR-A-YIRKATA--- 81 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HH-H-HHHHHHH---
Confidence 34445566666688888777654333222 111122356789999888887653333221 11 1 2222222
Q ss_pred HHhcCCHHHHHHHHHhhc
Q 001157 84 ALDRQDRAKAVEILVKDL 101 (1135)
Q Consensus 84 ll~~~~~~~A~~~l~~~~ 101 (1135)
+...|+..+|+..+++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHH
Confidence 334688888888888653
No 414
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=20.85 E-value=2.7e+02 Score=24.87 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=44.4
Q ss_pred HHHHHHhhhhcchHHHHHHHHHhcCCCcc-----HHHHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHH
Q 001157 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLE 83 (1135)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lE 83 (1135)
..+-..+++..-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+........ .. . +..+-..
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~-~~~lg~~--- 88 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SK-A-WSRLGLA--- 88 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HH-H-HHHHHHH---
Confidence 33444555555577777776654333222 111122356688888887776653332221 11 1 2222222
Q ss_pred HHhcCCHHHHHHHHHhhc
Q 001157 84 ALDRQDRAKAVEILVKDL 101 (1135)
Q Consensus 84 ll~~~~~~~A~~~l~~~~ 101 (1135)
+...|+..+|+..+++.+
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 234578888887777643
No 415
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=20.16 E-value=4.4e+02 Score=23.05 Aligned_cols=84 Identities=10% Similarity=-0.005 Sum_probs=40.0
Q ss_pred HHHHhhhhcchHHHHHHHHHhcCCCcc-HH----HHHHHhhcccHHHHHHHhcCCCcccccchhhHHHHHHHHHHHHHHH
Q 001157 11 LILQFLDEEKFKETVHKLEQESGFFFN-MK----HFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEAL 85 (1135)
Q Consensus 11 li~q~L~~~g~~~s~~~L~~Esg~~~~-~~----~l~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~lEll 85 (1135)
+-..++...-|.++...+++=..+..+ .. .=.-....|+|++|+..+.......... +. ..|. +-.. ++
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~-~~~~-lg~~---~~ 100 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PR-FPFH-AAEC---LL 100 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-TH-HHHH-HHHH---HH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch-HHHH-HHHH---HH
Confidence 344445555567766666543222221 11 1112345677777777766543322211 11 1111 1222 33
Q ss_pred hcCCHHHHHHHHHhh
Q 001157 86 DRQDRAKAVEILVKD 100 (1135)
Q Consensus 86 ~~~~~~~A~~~l~~~ 100 (1135)
..|+..+|+..+++.
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 467777777777764
Done!