BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001159
(1135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 29/268 (10%)
Query: 414 CVWG----PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
VWG PDG + A V L+ N G+L Q L H V +AF+ P+ Q
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVRGVAFS-PDGQ-T 235
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I + DDK +K+W+ G+ T GH + V V + Q I S + D +K W +
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVA--FRPDGQTIASASDDKTVKLWNRN 292
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
L + + W +A+S DG + S K + WN G +T +G
Sbjct: 293 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKT----VKLWNR-NGQHLQTLTGHSS 345
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNKEGSLL 647
GV F +A D+ +K W+ N +L T+ G +S R + F+ +G +
Sbjct: 346 SVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTI 400
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEGRA 675
A + D +K L N +G +LL+ L G +
Sbjct: 401 ASASDDKTVK-LWNRNG-QLLQTLTGHS 426
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+++ ++AH V +AF+ P+ Q I + DDK +K+W+ G+ T GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 62
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
V Q I S + D +K W + L + + + +A+S DG + S
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASAS 117
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620
K + WN G + +T +G GV F +A D+ +K W+ N
Sbjct: 118 DDKT----VKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NG 170
Query: 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675
+L T+ G + + F+ +G +A + D +K L N +G +LL+ L G +
Sbjct: 171 QLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNG-QLLQTLTGHS 221
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV + PDG + A V L+ N G+L Q L H V +AF+ P+ Q
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVWGVAFS-PDDQ-T 440
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I + DDK +K+W+ G+ T GH + V V Q I S + D +K W +
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 497
Query: 530 --YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
L + + + +A+S DG + S K + WN G + +T +G
Sbjct: 498 GQLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLTGHS 549
Query: 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
GV F +A + +K W+
Sbjct: 550 SSVWGVA-FSPDGQTIASASSDKTVKLWN 577
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 841 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
S +A S + + SAS K V L+N +++ + +AF P D IA
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 524
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
+D +V+++N R ++ L GH + + G+AFSP + S+ +D + +W
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 841 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
S +A S + + SAS K V L+N +++ + +AF P D IA
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRP-DGQTIA 278
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W
Sbjct: 279 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 841 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
S +A S + + SAS K V L+N +++ + +AF P D+ IA
Sbjct: 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIA 442
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W+ +
Sbjct: 443 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---- 497
Query: 960 LKSRFIQAPAGRQSPLVG 977
+ +Q G S + G
Sbjct: 498 --GQLLQTLTGHSSSVRG 513
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 835 NESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 893
N + S +A S + + SAS K V L+N +++ + +AF P
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP- 67
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D IA +D +V+++N R ++ L GH + + G+AFSP + S+ D + +W+
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVG 977
+ + +Q G S + G
Sbjct: 127 RN------GQLLQTLTGHSSSVWG 144
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 17/230 (7%)
Query: 841 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
S +A S + + SAS K V L+N + T+ + +AF P D IA
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSP-DGQTIA 360
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W+ +
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---- 415
Query: 960 LKSRFIQAPAGRQSPLVGETKVQFH-NDQTHLLVVHESQISVYDSKLECSRSWSPKDALP 1018
+ +Q G S + G V F +DQT + + +++ + ++ +
Sbjct: 416 --GQLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH---S 467
Query: 1019 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1068
+ + +S DG + + D + +++ + G S+ + A S
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 517
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 841 EESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899
S +A S + + SAS K V L+N +++ + +AF P D IA
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIA 196
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
+D +V+++N R ++ L GH + + G+AFSP + S+ D + +W
Sbjct: 197 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+V+ + P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 102
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
V+ DDK +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 103 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
A + + + ++ DG+ + S +S +G + W+ + G +T
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 214
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
+ V+F LAA + +K WD L T F+ G
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGR 674
V+ S++ + + N +++ L+G
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 196 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 879 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 312
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 313 ENIIASAALENDKTIKLWKSD 333
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1011
+ + LK+ PA P+ + V F+ D + ++ ++ ++D+ +C ++
Sbjct: 158 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 1012 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
D P+S +S +G + A D + ++D
Sbjct: 210 IDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 43 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 93
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 94 -------------------------------------AWSSDSNLLVSASDDKT----LK 112
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 172 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 47 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 106 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFD 1046
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D
Sbjct: 154 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 238 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+V+ + P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 104
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
V+ DDK +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 105 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
A + + + ++ DG+ + S +S +G + W+ + G +T
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 216
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
+ V+F LAA + +K WD L T F+ G
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGR 674
V+ S++ + + N +++ L+G
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 198 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 879 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 314
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 315 ENIIASAALENDKTIKLWKSD 335
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL-VVHESQISVYDSKL-ECSRSW 1011
+ + LK+ PA P+ + V F+ D + ++ ++ ++D+ +C ++
Sbjct: 160 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 1012 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
D P+S +S +G + A D + ++D
Sbjct: 212 IDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 45 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 95
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 96 -------------------------------------AWSSDSNLLVSASDDKT----LK 114
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 174 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 28/172 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 49 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 108 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFD 1046
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D
Sbjct: 156 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 56/230 (24%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 240 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+W++ +GH V S H E+I + D IK W D
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 78 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 133
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 191
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 192 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 249
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 191 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 879 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 307
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 308 ENIIASAALENDKTIKLWKSD 328
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V ++ ++D+ +C +
Sbjct: 153 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 202
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 203 TLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 53/226 (23%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
+ H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 34 FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 88
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
A+S+D L S K
Sbjct: 89 -----------------------------------------AWSSDSNLLVSASDDKT-- 105
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
L W+ S G +T G + F+ N ++ + ++ WD+ L T+
Sbjct: 106 --LKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
A P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 163 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 42 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 101 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 149 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 233 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 879 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 954 I 954
+
Sbjct: 139 V 139
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G + F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 931
+ +M A + + F P + +A D ++I+ + + + GH+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 932 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQT 988
A+S N LVS+ D L +W + + LK+ L G + F N Q+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQS 122
Query: 989 HLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1042
+L+V + + ++D K C ++ LPA P+S+ ++ DG L+ + DG
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 1043 GVFDAET 1049
++D +
Sbjct: 177 RIWDTAS 183
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 879 MS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 954 I 954
+
Sbjct: 139 V 139
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 53/226 (23%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
+ H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 20 FTLAGHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--- 74
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
A+S+D L S K
Sbjct: 75 -----------------------------------------AWSSDSNLLVSASDDKT-- 91
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
L W+ S G +T G + F+ N ++ + ++ WD+ L T+
Sbjct: 92 --LKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
A P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 149 PAHSD-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 28/187 (14%)
Query: 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 931
+ +M A + + F P + +A D ++I+ + + + GH+ I+ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 932 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQT 988
A+S N LVS+ D L +W + + LK+ L G + F N Q+
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQS 122
Query: 989 HLLV--VHESQISVYDSKLE-CSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1042
+L+V + + ++D K C ++ LPA P+S+ ++ DG L+ + DG
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 1043 GVFDAET 1049
++D +
Sbjct: 177 RIWDTAS 183
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L++ H GGV + +AH +V+ D+ ++VWD+ G + FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 545
++I++I + + D + W S D +D P G+ +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605
+ S G + S ++ L+ W+ ++ SG R + +D R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638
A + I+ WD++N ++ T+ L RL
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H + + H K+ CI + D I++WD+ G YT +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 509 ESIQFIFSTAIDGKIKAW 526
S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 418 PDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L V+ DD
Sbjct: 36 PNGEWLAASSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL--VSASDD 89
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
A + + + ++ DG+ + S +S +G + W+ + G +T + V+F
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
LAA + +K WD L T F+ G V+ S++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 657 KILANSDGVRLLRMLEGR 674
+ N +++ L+G
Sbjct: 264 VYIWNLQTKEIVQKLQGH 281
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 879 MSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 294 ENIIASAALENDKTIKLWKSD 314
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 954 IDKWEKLKS 962
+ + LK+
Sbjct: 139 VKTGKCLKT 147
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921
G+ S F + + A + + F P + +A D ++I+ + + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 981
GH+ I+ +A+S N LVS+ D L +W + + LK+ L G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112
Query: 982 QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1032
F N Q++L+V + + ++D K +C ++ LPA P+S+ ++ DG L
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166
Query: 1033 VYAGFCDGAIGVFDAET 1049
+ + DG ++D +
Sbjct: 167 IVSSSYDGLCRIWDTAS 183
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LAASSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 29/213 (13%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L++ H GGV + +AH +V+ D+ ++VWD+ G + FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 545
++I++I + + D + W S D +D P G+ +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605
+ S G + S ++ L+ W+ ++ SG R + +D R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638
A + I+ WD++N + T+ L RL
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H + + H K+ CI + D I++WD+ G YT +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 509 ESIQFIFSTAIDGKIKAW 526
S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 879 MSPP--PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 937 LNALVSS 943
N + S+
Sbjct: 294 ENIIASA 300
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 954 IDKWEKLKS 962
+ + LK+
Sbjct: 139 VKTGKCLKT 147
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921
G+ S F + + A + + F P + +A D ++I+ + + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 981
GH+ I+ +A+S N LVS+ D L +W + + LK+ L G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------------LKGHSNY 112
Query: 982 QF---HNDQTHLLV--VHESQISVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLL 1032
F N Q++L+V + + ++D K +C ++ LPA P+S+ ++ DG L
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSL 166
Query: 1033 VYAGFCDGAIGVFDAET 1049
+ + DG ++D +
Sbjct: 167 IVSSSYDGLCRIWDTAS 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 139 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 188
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 189 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 177 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 937 LNALVSSGAD 946
N + S+ +
Sbjct: 294 ENIIASAALE 303
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 28 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 135 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 82 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 187 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 838 KPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 896
K E+ C A S +DSY+ + S K V +++ T K++ + F + N+
Sbjct: 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 713
Query: 897 II-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
++ A G D ++++++ E + + GH N + FSP L S AD L +W +
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478
DG L + ++ ++ + TG+ ++ + AH V D ++ +++ D
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQ-TGD---YVFLQAHQETVKDFRLLQDSR---LLSWSFDGT 1066
Query: 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+KVW+V+ GR + F H+ V S C ++ +F ST+ D K W +D L +
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLHELK 1124
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
A+S DG L + GE + WN S+G +
Sbjct: 1125 GHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1161
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + L+I AH V AF+ + I TC DK +K+WD G+ +T++ H
Sbjct: 646 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 500 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C +S + +T + D +K W + R N +S D L S
Sbjct: 702 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760
Query: 559 C 559
C
Sbjct: 761 C 761
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMED 904
C + S + ++ A+ KV LF++ T ++ + + F P D+ + I +
Sbjct: 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQ 861
Query: 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
V+++N+ +GH + + G+ FSP ++ +++ D + +W K
Sbjct: 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 867 FNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 925
N T K ++ + + P A + A QD IA D ++Q++ E +K H+
Sbjct: 598 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 657
Query: 926 NRITGLAFSPTLNALVSSGADAQLCMW 952
+ + AFS + + + AD ++ +W
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIW 684
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 609 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 664
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+I + + D K+K W
Sbjct: 665 FSSDDSYIATCSADKKVKIW---------------------------------------- 684
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 624
+ + G + TY ++ + F N L A ++F +K WD++
Sbjct: 685 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
T+ G + RF+ + LLA ++D +++
Sbjct: 738 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 898 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957
+A G ED +++I + + V + GH+ + + F+ L+SS D+ + +W+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 958 EKLKSRFIQA 967
+ F+QA
Sbjct: 1033 QTGDYVFLQA 1042
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 893 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
QD+ +++ D +V+++NV ++ HQ + A S S+ AD +W
Sbjct: 1054 QDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 953 SID 955
S D
Sbjct: 1113 SFD 1115
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 838 KPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 896
K E+ C A S +DSY+ + S K V +++ T K++ + F + N+
Sbjct: 661 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH 720
Query: 897 II-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
++ A G D ++++++ E + + GH N + FSP L S AD L +W +
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478
DG L + ++ ++ + TG+ ++ + AH V D ++ +++ D
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQ-TGD---YVFLQAHQETVKDFRLLQDSR---LLSWSFDGT 1073
Query: 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+KVW+V+ GR + F H+ V S C ++ +F ST+ D K W +D L +
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLHELK 1131
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
A+S DG L + GE + WN S+G +
Sbjct: 1132 GHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1168
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + L+I AH V AF+ + I TC DK +K+WD G+ +T++ H
Sbjct: 653 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 500 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C +S + +T + D +K W + R N +S D L S
Sbjct: 709 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 767
Query: 559 C 559
C
Sbjct: 768 C 768
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMED 904
C + S + ++ A+ KV LF++ T ++ + + F P D+ + I +
Sbjct: 810 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQ 868
Query: 905 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
V+++N+ +GH + + G+ FSP ++ +++ D + +W K
Sbjct: 869 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 867 FNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 925
N T K ++ + + P A + A QD IA D ++Q++ E +K H+
Sbjct: 605 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 664
Query: 926 NRITGLAFSPTLNALVSSGADAQLCMW 952
+ + AFS + + + AD ++ +W
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIW 691
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 616 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 671
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+I + + D K+K W
Sbjct: 672 FSSDDSYIATCSADKKVKIW---------------------------------------- 691
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 624
+ + G + TY ++ + F N L A ++F +K WD++
Sbjct: 692 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
T+ G + RF+ + LLA ++D +++
Sbjct: 745 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 898 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957
+A G ED +++I + + V + GH+ + + F+ L+SS D+ + +W+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 958 EKLKSRFIQA 967
+ F+QA
Sbjct: 1040 QTGDYVFLQA 1049
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 893 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
QD+ +++ D +V+++NV ++ HQ + A S S+ AD +W
Sbjct: 1061 QDSRLLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 953 SID 955
S D
Sbjct: 1120 SFD 1122
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 60 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 115
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 173
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 174 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 173 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 289
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 290 ENIIASAALENDKTIKLWKSD 310
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 135 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 184
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 185 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 24 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 83 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 131 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 20 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 78 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 183 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 236
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 158 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 216 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 57 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 112
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 170
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 171 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 228
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 170 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 286
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 287 ENIIASAALENDKTIKLWKSD 307
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 132 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 181
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 182 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 21 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 80 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 128 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 17 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 75 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 180 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 233
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 155 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 213 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 61 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 116
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 174 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 291 ENIIASAALENDKTIKLWKSD 311
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 136 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 185
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 186 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 132 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 21 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 79 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 184 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 159 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 217 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 62 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 117
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 175
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 176 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 233
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 175 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 291
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 292 ENIIASAALENDKTIKLWKSD 312
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 137 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 186
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 187 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 26 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 85 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 133 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 22 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 80 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 185 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 238
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 160 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 218 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 66 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 121
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 179
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 180 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 237
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 179 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 295
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 296 ENIIASAALENDKTIKLWKSD 316
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 141 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 190
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 191 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 30 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 89 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 137 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 26 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 84 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 189 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 242
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 164 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 222 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 61 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 116
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 174 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 290
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 291 ENIIASAALENDKTIKLWKSD 311
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 136 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 185
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 186 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 25 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 132 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 21 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 79 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 184 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 159 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 217 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 142 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 192 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 138 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 85 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 32/156 (20%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
++WD AS L++D V+ + P+G + A + + L+ Y+ L+ +
Sbjct: 180 RIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 448 EIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIKVWDVVAGRKQYTFEG 495
H N++ CI V+ +D ++ +W++ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 496 HEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
H V S H E+I I S A+ D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 142 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 192 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 138 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 85 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 165 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 223 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH Y C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF 878
++W SG + I++ P + + S N Y+++A+ + L++ K + +
Sbjct: 180 RIWDTASGQCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 879 M--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
F F I G ED+ V I+N++ E+ KL+GH + + A PT
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 296
Query: 937 LNALVSSGA--DAQLCMWSID 955
N + S+ D + +W D
Sbjct: 297 ENIIASAALENDKTIKLWKSD 317
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N++ +D +++I++V + LKGH N + F+P N +VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ---ISVYDSKL-ECSR 1009
+ + LK+ PA P+ + V F+ D + L+V S ++D+ +C +
Sbjct: 142 VKTGKCLKT----LPA-HSDPV---SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLK 191
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046
+ D P+S +S +G + A D + ++D
Sbjct: 192 TLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 943
A + + F P + +A D ++I+ + + + GH+ I+ +A+S N LVS+
Sbjct: 31 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 944 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF---HNDQTHLLV--VHESQI 998
D L +W + + LK+ L G + F N Q++L+V + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 999 SVYDSKL-ECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
++D K +C ++ LPA P+S+ ++ DG L+ + DG ++D +
Sbjct: 138 RIWDVKTGKCLKT------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 27/236 (11%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V +
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TS 562
+ + S + D +K W D C + +F C S
Sbjct: 85 L--LVSASDDKTLKIW-----------DVSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
+ + W+ G +T + V F+ + +++ + + WD +
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678
L T+ D P S ++F+ G + T DN +K+ S G + L+ G +K
Sbjct: 190 LKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 340 VRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF----------- 387
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 388 ---------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432
++WD AS L++D V+ + P+G + A + +
Sbjct: 165 RDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMIK 480
L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 223 KLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 836 ESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 894
E K E+ C A S +D ++ + S KV ++N MT +++ + F
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 895 NNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
++++ A G D ++++++ E + + GH N + FSP L S AD L +W
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 834 INESKPTEES---AACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLA 889
+N P E+ C + S + + +M A+ K+ LF++ T ++ + +
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 949
F PQ N++ + + V+++N +GH + + G+ FSP ++ ++S D +
Sbjct: 854 FSPQ-NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912
Query: 950 CMWSIDK 956
+W K
Sbjct: 913 RLWETKK 919
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + LEI AH V AF+ ++ I TC DK +K+W+ + G +T++ H
Sbjct: 652 TGE--KLLEIKAHEDEVLCCAFSTDDR--FIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707
Query: 500 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C S + +T + D +K W + R N +S D L S
Sbjct: 708 V-NCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766
Query: 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
C S +G L W+ + S ++S+ V QF
Sbjct: 767 C--SADGTLKL--WDAT--------SANERKSINVKQF 792
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535
D +KVW+++ G K+ F H+ V S C ++ +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
+ A+S D T L + G GE + WN S G +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST-LLATG-DDNGEIRI--WNVSNGEL 1167
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+FI + ++D K+K W
Sbjct: 671 FSTDDRFIATCSVDKKVKIW 690
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936
+ + P A + A +D IA D ++Q++ E ++K H++ + AFS
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 937 LNALVSSGADAQLCMWS 953
+ + D ++ +W+
Sbjct: 675 DRFIATCSVDKKVKIWN 691
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 383 AHKPFKVWDISAA----SMPLQNALLN------DAAISVNRCVWGPDGLMLGVAFSKHIV 432
A K+WD ++A S+ ++ LN D + V C W DG + VA +K+ +
Sbjct: 769 ADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA-AKNKI 827
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQ 490
L+ + +G L + H G + I + P L +V +++W+ + K
Sbjct: 828 FLFDIHTSGLLGE-----IHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSKV 881
Query: 491 YTFEGHEAPVYSV 503
GH + V+ V
Sbjct: 882 ADCRGHLSWVHGV 894
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 847 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT----FLAFHPQ-DNNIIAIG 901
+A S ++ ++S GG+ + + K M A T + F P D +I G
Sbjct: 115 VAFSPDNRQIVS--GGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961
D+ V+++++ + T LKGH N +T + SP + SS D +W + K E L
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 962 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-----LECS-RSWSPKD 1015
AP ++ F ++ + E I ++D + +E + K
Sbjct: 233 EMAAGAPI---------NQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKK 283
Query: 1016 ALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045
+P +S A +S DG +Y+G+ D I V+
Sbjct: 284 IVPECVSIA-WSADGSTLYSGYTDNVIRVW 312
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV L +N GE L AH V+ + F+ IV+
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
G D ++KVWD+ GR +GH V SV
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 904 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
D S++++N++ + + K GH + +AFSP +VS G D L +W++
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 61/266 (22%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV---- 503
++ H V+D+A + N V+ D +++W++ G+ QY F GH V SV
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 504 ----------------------CPH------HKESIQFI-FSTAIDGKI---KAW----- 526
C H H + + + FS ++D + W
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 527 LYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583
++D R+ D G N+ T + S DG+ S + K+G + L W+ ++G A+
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL--WDLTKGEALSEMA 235
Query: 584 SGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV--DADGG---LPASPR 637
+G + Q + NR+ + A E I+ +D++N +++ + + G +P
Sbjct: 236 AGAP-----INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVS 290
Query: 638 LRFNKEGSLLAVTTSDNGIKILANSD 663
+ ++ +GS L +DN I++ S+
Sbjct: 291 IAWSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 823 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-----TFKVMTM 877
QP D+ S+ T +S C K + + ASGG L + K + +
Sbjct: 17 QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTKLKGHQNRITG 930
+A+ P ++N+IA G ED +V ++ + + E L+GH R+
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 931 LAFSPTL-NALVSSGADAQLCMWSI 954
+A+ PT N L+S+G D + +W +
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D +I VWDV G T + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641
T G KR V T +N L+AG + I WD+ + T+ D + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGSLLAVTTSDNGIKILANSDG 664
++G+L+ + D ++++ G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 823 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMM-----TFKVMTM 877
QP D+ S+ T +S C K + + ASGG L + K + +
Sbjct: 17 QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTKLKGHQNRITG 930
+A+ P ++N+IA G ED +V ++ + + E L+GH R+
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 931 LAFSPTL-NALVSSGADAQLCMWSI 954
+A+ PT N L+S+G D + +W +
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D +I VWDV G T + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641
T G KR V T +N L+AG + I WD+ + T+ D + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGSLLAVTTSDNGIKILANSDG 664
++G+L+ + D ++++ G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 25/240 (10%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392
++ ++ R N S+V ++ F+ +Q +L G N G+I +W++ + P +
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN---KCTESPSNYTPL 156
Query: 393 S-AASMPLQNALLNDAAISVNRCVWGPDG-----LMLGVAFSKHIVHLYTYNPTGELRQH 446
+ SM + +++ A V+ G + + K ++HL +P ++Q
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTC---GDDKMIKVWDVVAGRK--QYTFEGHEAPVY 501
L + HP + T +D I +WD+ Q +GH+ +
Sbjct: 217 LS----------VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ H++ + S+ D + W + + A GNWC ++ + LF+C +
Sbjct: 267 SLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 126 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 185
Query: 917 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 970
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 186 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 245
Query: 971 RQSPLVGETKVQF 983
P + + K+ F
Sbjct: 246 TNRPFISQ-KIHF 257
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 89 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 917 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 970
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Query: 971 RQSPLVGETKVQF 983
P + + K+ F
Sbjct: 209 TNRPFISQ-KIHF 220
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 89 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 917 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 970
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 208
Query: 971 RQSPLVGETKVQF 983
P + + K+ F
Sbjct: 209 TNRPFISQ-KIHF 220
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 917 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 970
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 209
Query: 971 RQSPLVGETKVQF 983
P + + K+ F
Sbjct: 210 TNRPFISQ-KIHF 221
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916
++ S G + + N +T + + ++ A L FHP+D N++ +D +++++N++ D
Sbjct: 85 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 144
Query: 917 VKT---KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAG 970
+ ++GH++ + + ++S G D L +W I+ +K + P
Sbjct: 145 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNK 204
Query: 971 RQSPLVGETKVQF 983
P + + K+ F
Sbjct: 205 TNRPFISQ-KIHF 216
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 45/262 (17%)
Query: 446 HLEIDAHVGGVNDIAFAHPNKQLCI-VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H + H V+D+A + N C ++ DK +++WD+ G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125
Query: 505 --PHHKESIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAY-----SADG 553
P +++ I S + +IK W + LG S + + +W + + Y SA+
Sbjct: 126 FSPDNRQ----ILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 554 TRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLA-AGDEF 610
+ F+ + G + L WN + I+ T F+ V + N +++A G +
Sbjct: 180 VQPFAPYFASVGWDGRLKVWN-TNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
++ WD+ N+ + D G + ++ FN + +AV T D G+KI
Sbjct: 236 KLLIWDILNLTY-PQREFDAGSTIN-QIAFNPKLQWVAVGT-DQGVKIF----------- 281
Query: 671 LEGRAMDKNRCPSEPISSKPLT 692
M +++ P I ++P+T
Sbjct: 282 ---NLMTQSKAPVCTIEAEPIT 300
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 893 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
Q+N D +++++++R + GHQ+ + +AFSP ++S+GA+ ++ +W
Sbjct: 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 953 SI 954
+I
Sbjct: 146 NI 147
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 6/150 (4%)
Query: 904 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 963
D ++++N +++ K H++ + L+ SP + + G D +L +W I +
Sbjct: 193 DGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Query: 964 FIQAPAGRQ---SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPA 1019
F Q +P + V ++ +S+ V + E +++ K P
Sbjct: 252 FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311
Query: 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
S A ++ G ++AGF DG I F ET
Sbjct: 312 CTSLA-WNALGKKLFAGFTDGVIRTFSFET 340
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-------TKLKGHQNRITGLAFSPTL 937
A F +D+ ++ G D +V I+ + +E L GH + ++ LA S
Sbjct: 29 AGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88
Query: 938 NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HES 996
+SS D L +W + K RF+ G QS + V F D +L E
Sbjct: 89 CFAISSSWDKTLRLWDLRTGTTYK-RFV----GHQSEVYS---VAFSPDNRQILSAGAER 140
Query: 997 QISVYDSKLECSRSWSPKDALPAPISSAIYS 1027
+I +++ EC S + K+ +S YS
Sbjct: 141 EIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 106/288 (36%), Gaps = 29/288 (10%)
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
KVWD L SV + G +L + + L+ + +R
Sbjct: 132 IKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
D +V V+ + PN IV+ DK IK+W+V G TF GH V V P+
Sbjct: 189 HGHDHNVSSVSIM----PNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCTMMAYS----ADGTRL 556
++ I S + D ++ W+ + + + W +YS A G+
Sbjct: 244 QDGTL--IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 557 FSCGT------SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610
G S + + W+ S G T G GV+ F + L+ D+
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDK 360
Query: 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
++ WD N + T++A S L F+K + + D +K+
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
I++C DDK ++VWD R T HE V S+ H ++ ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 944
T + FHP +++ ED+++++++ + + LKGH + + ++F + L S
Sbjct: 111 VTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 945 ADAQLCMWSIDKWEKLKS 962
AD + +W +E +++
Sbjct: 170 ADMTIKLWDFQGFECIRT 187
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H V + F HP + +V+ +D IKVWD G + T +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLG 532
S + + S + D IK W D+ G
Sbjct: 161 -SGKLLASCSADMTIKLW--DFQG 181
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955
K L GH++ +T + F P + +VS+ DA + +W +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 893 QDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 950
+++ + G D V+++ R + +++ L+GHQ + + S TL SS DA +
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 951 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR 1009
+W ++ +++KS AG P+ T + F D +L H +++++ +E +
Sbjct: 106 LWDLENGKQIKS----IDAG---PVDAWT-LAFSPDSQYLATGTHVGKVNIF--GVESGK 155
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
D I S YS DG + +G DG I +FD T
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 847 IALSKNDSYVMS-ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905
IA S + Y+ S A G +++F++ T K++ L F P D+ ++ +D
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDG 228
Query: 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935
++IY+V+ + L GH + + +AF P
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDG 521
HPN+Q + T G D M+ +WDV G + + HEA ++ V H + + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 522 KIKAW 526
+ W
Sbjct: 304 SLWHW 308
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 33/241 (13%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMM-TFKVMTM 877
+LW +GT + +K +A S ++ ++S S K + L+N + K
Sbjct: 88 RLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 143
Query: 878 FMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935
S + + F P +N I++ G D V+++N+ ++KT GH + + SP
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Query: 936 TLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLL 991
+ S G D Q +W +++ + L + I A + F ++ L
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-------------LCFSPNRYWLC 249
Query: 992 VVHESQISVYD-------SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1044
I ++D +L+ + A P +S +S DG ++AG+ D + V
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Query: 1045 F 1045
+
Sbjct: 310 W 310
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV + +N G + ++ ++H V+ + F+ + IV+
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
CG DK++KVW++ + + GH + +V
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 532
D +++WD+ G F GH V SV + I S + D IK W + LG
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 139
Query: 533 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 589
V ++ W + + +S + + + SCG K LV+ WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 194
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
L V + + G + Q WD++ L T+D
Sbjct: 195 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--------PVYS 502
H G +N + + P+ LC + G D +WD+ G+ YT +G + Y
Sbjct: 190 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 247
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 558
+C SI+ ++GKI + D L V A CT +A+SADG LF+
Sbjct: 248 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 300
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 33/241 (13%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMM-TFKVMTM 877
+LW +GT + +K +A S ++ ++S S K + L+N + K
Sbjct: 111 RLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166
Query: 878 FMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935
S + + F P +N I++ G D V+++N+ ++KT GH + + SP
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Query: 936 TLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQFHNDQTHLL 991
+ S G D Q +W +++ + L + I A + F ++ L
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-------------LCFSPNRYWLC 272
Query: 992 VVHESQISVYD-------SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1044
I ++D +L+ + A P +S +S DG ++AG+ D + V
Sbjct: 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Query: 1045 F 1045
+
Sbjct: 333 W 333
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV + +N G + ++ ++H V+ + F+ + IV+
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
CG DK++KVW++ + + GH + +V
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 532
D +++WD+ G F GH V SV + I S + D IK W + LG
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 162
Query: 533 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 589
V ++ W + + +S + + + SCG K LV+ WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 217
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
L V + + G + Q WD++ L T+D
Sbjct: 218 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--------PVYS 502
H G +N + + P+ LC + G D +WD+ G+ YT +G + Y
Sbjct: 213 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 558
+C SI+ ++GKI + D L V A CT +A+SADG LF+
Sbjct: 271 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 904 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 963
D +V+++N+ ++++ L GH ++ +A SP + S G D + +W + + +KL S
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKD-ALPAP 1020
++A + + + H + + ES+ V D K++ D + PA
Sbjct: 599 -LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAA 657
Query: 1021 ISSAIYSC-------DGLLVYAGFCDGAIGVF 1045
+ C DG +++G+ DG I V+
Sbjct: 658 TKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
+LR L H G V+ +A + P+ LC + G D ++ +WD+ G+K Y+ E + ++
Sbjct: 552 KLRSTLA--GHTGYVSTVAVS-PDGSLC-ASGGKDGVVLLWDLAEGKKLYSLEANSV-IH 606
Query: 502 SVC--PHHKESIQFIFSTAIDGKIKAW------LYDYL-------GSRVDYDAPGN---- 542
++C P+ ++ A + IK W + + L + D P
Sbjct: 607 ALCFSPN-----RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 543 --WCTMMAYSADGTRLFS 558
+CT + +SADG+ LFS
Sbjct: 662 VIYCTSLNWSADGSTLFS 679
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 407 AAISVNRCVWGPDGLMLGVAFS---KHIVH------LYTYNPTGELRQHLEI--DAHVGG 455
A +S R V G +L VAFS + IV + +N GE + + + H
Sbjct: 461 AGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
V+ + F+ Q IV+ DK +KVW++ + + T GH V +V
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV------------ 567
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
A S DG+ S G K+G L W+ +
Sbjct: 568 --------------------------------AVSPDGSLCASGG--KDGVVLL--WDLA 591
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
EG K+ YS + + F R +L A E IK WD+++ +++ + D
Sbjct: 592 EG--KKLYSLEANSVIHALCFSPNR-YWLCAATEHGIKIWDLESKSIVEDLKVD 642
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 862 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918
G+V L+N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 884 AATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 942
++ ++P D + +D +++I++ + L+GH + ++ F PTL ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 943 SGADAQLCMWS 953
D L +W+
Sbjct: 246 GSEDGTLKIWN 256
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 862 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918
G+V L+N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 884 AATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 942
++ ++P D + +D +++I++ + L+GH + ++ F PTL ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 943 SGADAQLCMWS 953
D L +W+
Sbjct: 246 GSEDGTLKIWN 256
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947
+ F P D +A G ED ++I+++ ++ L+GH+ I L + P+ + LVS D
Sbjct: 129 VCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 948 QLCMWSI 954
+ +W +
Sbjct: 188 TVRIWDL 194
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
+ T +D++I++WD+ + +GHE +YS+
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTL 937
P FLA++P + + G D ++I+ D K +GHQ + +A+SP
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73
Query: 938 NALVSSGADAQLCMW 952
N L S+ DA C+W
Sbjct: 74 NYLASASFDATTCIW 88
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 896 NIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
N +A D++ I+ D E T L+GH+N + +A++P+ N L + D + +W
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 954 IDK 956
+D+
Sbjct: 134 VDE 136
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNRIT 929
++ +++ S + +HP ++A D +V++Y D+ L+GH++ +
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 930 GLAFSPTLNALVSSGADAQLCMW 952
LAF P+ L S D + +W
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 9/130 (6%)
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP + L G + L G R+ ++W S ++ L +V +
Sbjct: 14 HPDSRCWFLAWNPAGTL-LASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W P G L A ++ N + ++ H V +A+A P+ L + TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWA-PSGNL-LATCS 124
Query: 475 DDKMIKVWDV 484
DK + VW+V
Sbjct: 125 RDKSVWVWEV 134
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
K VW++ ++LN V VW P +L A V LY +
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR-EEEDDWV 185
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482
++ H V +AF ++L +C DD+ +++W
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRL--ASCSDDRTVRIW 221
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 66 PKFGTILASCSYDGKVLIW 84
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 939
+ PQ+ +IA S V +++ K +L+GHQ GL+++P LN
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195
Query: 940 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 991
L+S+ D +C+W I+ K + R I A ++ G T V + HLL
Sbjct: 196 YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 249
Query: 992 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1049
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 1050 LRFR 1053
L+ +
Sbjct: 310 LKLK 313
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 945
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 946 DAQLCMWSIDK 956
D +L +W + K
Sbjct: 343 DRRLHVWDLSK 353
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 259
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 939
+ PQ+ +IA S V +++ K +L+GHQ GL+++P LN
Sbjct: 138 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 197
Query: 940 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 991
L+S+ D +C+W I+ K + R I A ++ G T V + HLL
Sbjct: 198 YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 251
Query: 992 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1049
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 1050 LRFR 1053
L+ +
Sbjct: 312 LKLK 315
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 945
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 946 DAQLCMWSIDK 956
D +L +W + K
Sbjct: 345 DRRLHVWDLSK 355
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 261
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 839 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----------FMSPPPAATF 887
P + I++S +++Y+ + GK+ L+++ + +V T +S PA
Sbjct: 486 PLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946
+ +++A G D+++ IY+V R ++ L H++ + L + T + LVSSGAD
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGAD 604
Query: 947 AQLCMWSI 954
A + W++
Sbjct: 605 ACIKRWNV 612
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
II++ + D ++ Y + DEV + GH IT L T+N L+S D ++ W
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 830 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAA-TFL 888
T DI +S + ++LS+N V G + +F + +V +P A +++
Sbjct: 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494
Query: 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNA-------- 939
+ P + IA G + +Y+++ EVKT + ++I +++ P
Sbjct: 495 SISPSET-YIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 940 -LVSSGA-DAQLCMWSIDKWEKL 960
LV++G+ D + ++S+ + K+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKI 576
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 939
+ PQ+ +IA S V +++ K +L+GHQ GL+++P LN
Sbjct: 140 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 199
Query: 940 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 991
L+S+ D +C+W I+ K + R I A ++ G T V + HLL
Sbjct: 200 YLLSASDDHTICLWDINATPK-EHRVIDA----KNIFTGHTAV-VEDVAWHLLHESLFGS 253
Query: 992 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1049
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 1050 LRFRCRIGPSAYIPTYAVSNTAHPLVI 1076
L+ + S + V + H I
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETI 340
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 945
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 946 DAQLCMWSIDK 956
D +L +W + K
Sbjct: 347 DRRLHVWDLSK 357
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 263
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 38/201 (18%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF----IFSTAIDGKIKA 525
+V+ D M+KVWD +T +GH VY S+QF + S ++D I+
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--------SLQFDGIHVVSGSLDTSIRV 303
Query: 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TSKEGESHLVEWNESEG 577
W + GN ++ G + + G S +S + W+ G
Sbjct: 304 WDVE----------TGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---MNMLTTVDADGGLPA 634
+T G K V +N + + D+ +K WD+ + L T+++ G
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Query: 635 SPRLRFNKEGSLLAVTTSDNG 655
R+R + L+ S NG
Sbjct: 410 VWRIRASNT-KLVCAVGSRNG 429
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 898 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957
+ G D+S+++++V L GHQ+ +G+ N LVS AD+ + +W I
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTG 349
Query: 958 EKLKSRFIQAPAGRQSPLVGETKVQFHND 986
+ L++ +Q P QS + T +QF+ +
Sbjct: 350 QCLQT--LQGPNKHQSAV---TCLQFNKN 373
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 467 QLC---IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
Q C IV+ DD +KVW V G+ T GH V+S +++I I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
K W + + G+ T+ R+ S ++ L W+ G
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVV----SGSRDATLRVWDIETGQCLHVL 235
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
G ++ VQ+D R ++ +F +K WD + L T+
Sbjct: 236 MGHVA-AVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQG 277
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 895 NNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCM 951
+NI+ G DS+V+I++++ + L+G HQ+ +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 952 WSIDKWEKLKSRFIQAPAG 970
W + E +++ G
Sbjct: 387 WDLKTGEFIRNLVTLESGG 405
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 21/158 (13%)
Query: 895 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
+NII G D +++++N E L GH + + + +VS DA L +W I
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDI 226
Query: 955 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE-CSRSWSP 1013
+ + L A R G V ++ + V+D + E C +
Sbjct: 227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSG---------AYDFMVKVWDPETETCLHTLQG 277
Query: 1014 KDALPAPISSAIYSC--DGLLVYAGFCDGAIGVFDAET 1049
++ +YS DG+ V +G D +I V+D ET
Sbjct: 278 H-------TNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 843 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 901
+ C+ L ++ V+S S + ++++ T + + + M A + + D + G
Sbjct: 201 TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSG 255
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961
D V++++ + L+GH NR+ L F +VS D + +W ++
Sbjct: 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVE-----T 308
Query: 962 SRFIQAPAGRQSPLVG 977
I G QS G
Sbjct: 309 GNCIHTLTGHQSLTSG 324
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 846 CIALS--KNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIG 901
C+A S K+ ++ + ++ L++ K + P T LA+HPQ + + G
Sbjct: 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935
E+ +V + + + H +TGL FSP
Sbjct: 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP 267
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPD 419
+LV ++ G + LWE+ E L F ++ + +++ ++ S + V G
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYE--------HDDIVSTVSVLSSGTQAVSGSK 147
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
+ + V V L +Y AH V +A A P+K ++C +D I
Sbjct: 148 DICIKVWDLAQQVVLSSYR------------AHAAQVTCVA-ASPHKDSVFLSCSEDNRI 194
Query: 480 KVWDVVAGRKQYTFEGHEAPVY---SVCPHHKESIQFIF 515
+WD + G AP Y S+ H ++S F+F
Sbjct: 195 LLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEVFVF 232
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH-HKESIQFIFSTAIDGKIKAW--L 527
V+ D IKVWD+ ++ H A V V HK+S+ S + D +I W
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV--FLSCSEDNRILLWDTR 200
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
S++ APG T +A+ + +F G
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 862 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918
G+V L+N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 875 MTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 933
T+ ++ ++P D + +D +++I++ + L+GH + ++ F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 934 SPTLNALVSSGADAQLCMWS 953
PTL ++S D L +W+
Sbjct: 237 HPTLPIIISGSEDGTLKIWN 256
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound Inhibitor
Ck-869 And Atp
Length = 372
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 893 QDNNIIAIGMEDSSVQIYN------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946
+D IAI + V IY V+V E LK H ++TG+ ++P N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 947 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006
+W++ K K + R + V++ ++ V S++ + E
Sbjct: 74 RNAYVWTL-KGRTWKPTLVILRINRAARC-----VRWAPNEKKFAVGSGSRV-ISICYFE 126
Query: 1007 CSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1062
W + PI S + S D +L+ AG CD F+CRI SAYI
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------------FKCRI-FSAYI 173
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
W D + + + H VH+Y + ++ H E+ H G V I +A + + IVTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 476 DKMIKVWDV 484
D+ VW +
Sbjct: 73 DRNAYVWTL 81
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K++ TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVMIW 82
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 893 QDNNIIAIGMEDSSVQIYN------VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946
+D IAI + V IY V+V E LK H ++TG+ ++P N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 947 AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006
+W++ K K + R + V++ ++ V S++ + E
Sbjct: 74 RNAYVWTL-KGRTWKPTLVILRINRAARC-----VRWAPNEKKFAVGSGSRV-ISICYFE 126
Query: 1007 CSRSWSPKDALPAPISSAIYSCD----GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1062
W + PI S + S D +L+ AG CD F+CRI SAYI
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------------FKCRI-FSAYI 173
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
W D + + + H VH+Y + ++ H E+ H G V + +A + + IVTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 476 DKMIKVWDV 484
D+ VW +
Sbjct: 73 DRNAYVWTL 81
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + +W ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 862 GKVSLFNMMT---FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918
G+V ++N T + + + +P A F+A N I +G +D ++++N E
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIA----RKNWIIVGSDDFRIRVFNYNTGEKV 90
Query: 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958
+ H + I +A PT ++S D + +W+ WE
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WE 127
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 875 MTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 933
T+ ++ ++P D + +D +++I++ + L+GH + ++ F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 934 SPTLNALVSSGADAQLCMWS 953
PTL ++S D L +W+
Sbjct: 237 HPTLPIIISGSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I+ DD I+V++ G K FE H + S+ H + ++ S + D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE 127
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
++ ++ +A++ F+ G + + W+ + T + ++
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQE 184
Query: 589 RSLGVVQFDTTRNR--FLAAGDEFQIKFWDMDNMNMLTTVDA 628
R + V + ++ + A D+ IK WD + + T++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 880
LW SG ++ + +P E ++ + + + + S +V L+++ K + S
Sbjct: 140 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 198
Query: 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 939
L++ ++ I++ G + ++VRV E L GH + GL ++P
Sbjct: 199 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 255
Query: 940 LVSSGADAQLCMW 952
L S G D + +W
Sbjct: 256 LASGGNDNLVNVW 268
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 847 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 901
+A S V++ GG + ++N+ + ++ + + L + P +I+ G
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 351
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961
+ + I+ +LKGH +R+ L SP + S+ AD L +W + + +
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
Query: 962 SRFIQAPAGRQSPLV 976
R + + +S L+
Sbjct: 412 RREREKASAAKSSLI 426
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 880
LW SG ++ + +P E ++ + + + + S +V L+++ K + S
Sbjct: 129 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 187
Query: 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 939
L++ ++ I++ G + ++VRV E L GH + GL ++P
Sbjct: 188 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 244
Query: 940 LVSSGADAQLCMW 952
L S G D + +W
Sbjct: 245 LASGGNDNLVNVW 257
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 847 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 901
+A S V++ GG + ++N+ + ++ + + L + P +I+ G
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 340
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961
+ + I+ +LKGH +R+ L SP + S+ AD L +W + + +
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
Query: 962 SRFIQAPAGRQSPLV 976
R + + +S L+
Sbjct: 401 RREREKASAAKSSLI 415
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+V+ D I++WD+ G EGHE V + +K I S A DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW 361
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 27/172 (15%)
Query: 459 IAFAHPNKQLC-------IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
I H LC I+T D ++VWDV G T H V H + +
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLRFNN 223
Query: 512 QFIFSTAIDGKIKAWLY----DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + + D I W D RV G+ + D + S G+
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRV---LVGHRAAVNVVDFDDKYI----VSASGDR 276
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD 618
+ WN S RT +G KR + +Q+ R+R + +G + I+ WD++
Sbjct: 277 TIKVWNTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNTIRLWDIE 324
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 470 IVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+VTC D+ I VWD+ + + GH A V V K +I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVW 281
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+ + Y RL G+S ++ + W+ GA R G
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNTIRLWDIECGACLRVLEG- 334
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617
+ + ++FD R ++ + +IK WD+
Sbjct: 335 HEELVRCIRFDN--KRIVSGAYDGKIKVWDL 363
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFKVMTM- 877
++W +G ++ I+ + A + L N+ +++ S + +++++M + +T+
Sbjct: 196 RVWDVNTGEMLNTLIHHCE------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 249
Query: 878 --FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935
+ A + F D+ I D +++++N E L GH+ I L +
Sbjct: 250 RVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 306
Query: 936 TLNALVSSGADAQLCMWSID 955
L +VS +D + +W I+
Sbjct: 307 RL--VVSGSSDNTIRLWDIE 324
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 945
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 946 DAQLCMWSIDK 956
D +L +W + K
Sbjct: 339 DRRLNVWDLSK 349
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 939
+ PQ+ IIA S V +++ K +L+GHQ GL+++P L+
Sbjct: 132 YMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSG 191
Query: 940 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL------- 991
L+S+ D +C+W I K + + + A ++ G T V + HLL
Sbjct: 192 HLLSASDDHTICLWDISAVPK-EGKVVDA----KTIFTGHTAV-VEDVSWHLLHESLFGS 245
Query: 992 VVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAET 1049
V + ++ ++D++ S+ DA A ++ ++ + A G D + ++D
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
Query: 1050 LRFRCR 1055
L+ +
Sbjct: 306 LKLKLH 311
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ------- 490
+P+GE L + H +++ +PN +++ DD I +WD+ A K+
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK 220
Query: 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLF-GSVADDQKLMIW 255
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 880
LW SG ++ + +P E ++ + + + + S +V L+++ K + S
Sbjct: 49 LWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS 107
Query: 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNA 939
L++ ++ I++ G + ++VRV E L GH + GL ++P
Sbjct: 108 HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164
Query: 940 LVSSGADAQLCMW 952
L S G D + +W
Sbjct: 165 LASGGNDNLVNVW 177
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 847 IALSKNDSYVMSASGG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA-IG 901
+A S V++ GG + ++N+ + ++ + + L + P +I+ G
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL-WSPHYKELISGHG 260
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
+ + I+ +LKGH +R+ L SP + S+ AD L +W
Sbjct: 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 945
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 946 DAQLCMWSIDK 956
D +L +W + K
Sbjct: 341 DRRLNVWDLSK 351
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 939
+ PQ+ +IIA S V +++ K +L+GHQ GL+++ L+
Sbjct: 134 YXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 940 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--GRQSPLVGETKVQFHNDQTHLLVVHES 996
L+S+ D +C+W I+ K + + + A A S +V + ++ V +
Sbjct: 194 HLLSASDDHTVCLWDINAGPK-EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 997 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFRC 1054
++ ++D++ S+ DA A ++ ++ + A G D + ++D L+ +
Sbjct: 253 KLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 1055 RIGPSAYIPTYAVSNTAHPLVI 1076
S + V + H I
Sbjct: 313 HTFESHKDEIFQVHWSPHNETI 334
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSP-TLNALVSSGA 945
L+F+P I+A G D +V ++++R ++K + H++ I + +SP L SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 946 DAQLCMWSIDK 956
D +L +W + K
Sbjct: 341 DRRLNVWDLSK 351
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Query: 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVK----------TKLKGHQNRITGLAFSPTLNA 939
+ PQ+ +IIA S V +++ K +L+GHQ GL+++ L+
Sbjct: 134 YMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 193
Query: 940 -LVSSGADAQLCMWSIDKWEKLKSRFIQAPA--GRQSPLVGETKVQFHNDQTHLLVVHES 996
L+S+ D +C+W I+ K + + + A A S +V + ++ V +
Sbjct: 194 HLLSASDDHTVCLWDINAGPK-EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQ 252
Query: 997 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAETLRFRC 1054
++ ++D++ S+ DA A ++ ++ + A G D + ++D L+ +
Sbjct: 253 KLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 1055 RIGPSAYIPTYAVSNTAHPLVI 1076
S + V + H I
Sbjct: 313 HTFESHKDEIFQVHWSPHNETI 334
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 839 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----------FMSPPPAATF 887
P + I++S +++Y+ + GK+ L+++ + +V T +S PA
Sbjct: 486 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545
Query: 888 LAFHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946
+ +++A G D+++ IY+V R ++ L H++ + L + T + LVSSGAD
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGAD 604
Query: 947 AQLCMWSI 954
A + W++
Sbjct: 605 ACIKRWNV 612
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
II++ + D ++ Y + DEV + GH IT L T+N L+S D ++ WS
Sbjct: 312 IISLSL-DGTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWS 363
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+ TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKR--XATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVXIW 82
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224
Query: 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1009
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 22/162 (13%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W++
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 957 WEKLKSRFIQ--------APAGRQSPLVGETKVQ-FHNDQTHLLVVHESQISVYDSKLEC 1007
+ + + Q +P T ++ F D +L+ + + Y + E
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAE- 286
Query: 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
P +S A +S DG ++AG+ D I V+ T
Sbjct: 287 ----------PHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224
Query: 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1009
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 317
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 224
Query: 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1009
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045
+ K A P +S A +S DG ++AG+ D I V+
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVW 313
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 128
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 163 IISAG-NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--- 218
Query: 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1009
L ++ Q + + F ++ L + I V+ L
Sbjct: 219 ---LAAKKAMYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 273 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVMT 311
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 215
Query: 525 AW 526
W
Sbjct: 216 LW 217
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 44/228 (19%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G++++SMD + TIL W V S + H F++ + +S+ +N
Sbjct: 161 GTHIISMDV--ENVTIL-----------WNVISGTVMQH--FELKETGGSSINAENHS-G 204
Query: 406 DAAISVNRCVWGPDGLML--GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
D ++ V+ W D + G + + + PTG+L H G ++ + F
Sbjct: 205 DGSLGVD-VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI------GHHGPISVLEFND 257
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
NK L ++ DD +++W G Q F GH + S + + S ++DG +
Sbjct: 258 TNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK---VISCSMDGSV 312
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLV 570
+ W T++A S DG +F+ S++G+ + V
Sbjct: 313 RLWSLKQ-------------NTLLALSIVDGVPIFAGRISQDGQKYAV 347
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
Query: 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 965
++ +Y + KL GH I+ L F+ T L+S+ D L +W +
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 966 QAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAI 1025
+ + + VG+ KV + + + ++ K + S D + PI +
Sbjct: 288 HSQSIVSASWVGDDKV--------ISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337
Query: 1026 YSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1055
S DG F DG + V+D + L + R
Sbjct: 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 846 CIAL--SKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIG 901
C+A K+ ++ G++ L++ K T F + T + +HP+ ++ A G
Sbjct: 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
Query: 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 934
E +V + N++ + H ITGLA+S
Sbjct: 246 DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS 278
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421
+LV ++ G + LWE+ +E L F ++ L ++ +D G +
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSD----------GTQAV 155
Query: 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481
G FS V ++ + L+ + +AH VN +A A P K ++CG+D I +
Sbjct: 156 SGGKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLSCGEDGRILL 208
Query: 482 WD 483
WD
Sbjct: 209 WD 210
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 471 VTCGDDKMIKVWDVV--AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW-- 526
V+ G D +KVWD+ A K Y E + CP K++I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+R+D+ A T + + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I WDM NM+ +L T+ ADG + A P L R KE + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 654 NG 655
+G
Sbjct: 107 SG 108
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 167
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 206
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G + + L W+ EG ++T++G +
Sbjct: 207 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 238
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 218
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1013
W+ + Q G +S + F N ++ ++D + +
Sbjct: 219 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 276
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047
D + I+S +S G L+ AG+ D V+DA
Sbjct: 277 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G + + L W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1013
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G + + L W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1013
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G + + L W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1013
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G + + L W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC-DASAKL--WDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
D+N I D++ ++++ + T GH + L+ +P VS DA S
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA-----S 207
Query: 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1013
W+ + Q G +S + F N ++ ++D + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047
D + I+S +S G L+ AG+ D V+DA
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956
II+ G D V+ +N+ +++ GH + I L SP + S+G D ++ +W+
Sbjct: 169 IISAG-NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN--- 224
Query: 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-------SKLECSR 1009
L ++ Q + + F ++ L + I V+ L
Sbjct: 225 ---LAAKKAXYTLSAQDEVF---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049
+ K A P +S A +S DG ++AG+ D I V+ T
Sbjct: 279 AGYSKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVXT 317
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW 134
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DK +K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIX 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 935
AT LA+HP + +A+G + + ++N + + T +K G ITGL F+P
Sbjct: 123 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 175
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 184
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 185 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 243
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 244 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 501 YSVC 504
+ C
Sbjct: 301 NAAC 304
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
G L S V ++ G++ ++ H G V +A+AHP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 480 KVWDVVAG--RKQYTFEGHEAPVYSVC--PH 506
+W G K + GH++ V SVC PH
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 410 SVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA----- 462
SVN W P GL+L S + L TY G+ +AH G N +++A
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164
Query: 463 -----HPNKQ-----LCIVTCGDDKMIKVW---DVVAGRKQYTFEGHEAPVYSV--CPHH 507
HP+ Q + G D +IK+W + +++ E H V V P
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224
Query: 508 KESIQFIFSTAIDGKIKAWLYD 529
I S + DG++ W D
Sbjct: 225 GLPTSTIASCSQDGRVFIWTCD 246
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ TC D+ +K++DV G + GHE PV+ V H + S + D K+ W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 935
AT LA+HP + +A+G + + ++N + + T +K G ITGL F+P
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 501 YSVC 504
+ C
Sbjct: 300 NAAC 303
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSP 935
AT LA+HP + +A+G + + ++N + + T +K G ITGL F+P
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP 174
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 501 YSVC 504
+ C
Sbjct: 300 NAAC 303
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 21/159 (13%)
Query: 813 ATANVAPQLW--QPPSGTLMTNDINESKPTE--ESAACIALSKNDSYVMSASGGKVSLFN 868
A+A+ +LW + SG L+T D + K ++ ESA K + ++ G + L
Sbjct: 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLT 262
Query: 869 MMTFKVMTMFMSPPPAATFLAFHPQDNN-------IIAIGMED--------SSVQIYNVR 913
+ T M ++ S T + + NN ++ G S++ +Y V
Sbjct: 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY 322
Query: 914 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952
E T LKGH + F L S D + W
Sbjct: 323 SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMW--- 952
++A+G VQ+ +++ L+GH+ I +++SP + L ++ AD+++ +W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 953 -------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993
++D+ KS+ +++ + V + F +D HLL V
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKV--NGLCFTSDGLHLLTV 263
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 826 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG-KVSLFNMMTFKVMTMFMSPPPA 884
+ TL T D+ + T S +S V + G KV L ++ + +
Sbjct: 129 TNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE 188
Query: 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR--------VDE--------VKTKLKGHQNRI 928
+++ P+ + I+A DS V++++VR +D+ V++ H ++
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 929 TGLAFSPTLNALVSSGADAQLCMWS 953
GL F+ L++ G D ++ +W+
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
+G + +++ + + + + H + IT L F P+ AL+SS D QL +WS+
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EID AHV + + F + L ++ D +K+W V G T GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+ + + S ++DG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I W+M NM+ +L T+ ADG + A P L R KE + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 654 NG 655
+G
Sbjct: 103 SG 104
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 900 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
+G + +++ + + + + H + IT L F P+ AL+SS D QL +WS+
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EID AHV + + F + L ++ D +K+W V G T GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+ + + S ++DG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 341 RTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
RTL G+ V+ MD+ ++ I+ + G + +W+ F A +MP
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWD----------SFTTNKEHAVTMP- 105
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY--TYNPTGELR-QHLEIDAHVGGV 456
V C + P G + + +Y T++ + + + H +
Sbjct: 106 --------CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL 157
Query: 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 516
+ +F + + Q I+T D +WDV +G+ +F GH A V + E+ S
Sbjct: 158 SACSFTNSDMQ--ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 517 TAIDGKIKAW 526
D K W
Sbjct: 216 GGCDKKAMVW 225
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 904 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKWEKLK 961
D + +++V ++ GH + L +P T N VS G D + +W +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----- 229
Query: 962 SRFIQAPAGRQSPLVGETKVQFH-NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1020
+ +QA +S + V+++ + ++ +YD + + + K+++
Sbjct: 230 GQCVQAFETHESDV---NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 1021 ISSAIYSCDGLLVYAGFCDGAIGVFD 1046
SS +S G L++AG+ D I V+D
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWD 312
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953
++ G D ++ +++V + L GH+NR++ L SP A S D L +W+
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
V+ G DK VWD+ +G+ FE HE+ V SV
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEA 90
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEA 90
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH------------VGGVNDIAFAHPN 465
P G LG + +H NP + + H + VN IAF HP
Sbjct: 228 PTGFALGSIEGRVAIHYI--NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-HP- 283
Query: 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520
+ T G D WD A K T E + P+ + C +H +I F ++++ D
Sbjct: 284 VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI-FAYASSYD 337
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 88
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 86
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEA 90
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 33.1 bits (74), Expect = 0.87, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEA 86
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 33.1 bits (74), Expect = 0.91, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEA 90
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 42/249 (16%)
Query: 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404
Q + S+DF P + ++ G++ ++++E PFK +
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKF-----------KSTF 186
Query: 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY---NPTGELRQ-HLEIDAHVGGVNDIA 460
+ V+ + PDG + + LY TG L+ AH G V +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI----QFIFS 516
++ + I + DK IK+W+V + + T PV + + I Q + S
Sbjct: 247 WSPDGTK--IASASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTKQALVS 299
Query: 517 TAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574
+ +G I ++ LGS +V Y T ++ SADG LFS + E H+ W+
Sbjct: 300 ISANGFIN-FVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSA----DAEGHINSWDI 353
Query: 575 SEGAIKRTY 583
S G R +
Sbjct: 354 STGISNRVF 362
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 893 QDNNIIAIGMEDSSVQIYNV---RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 949
D +A+G +DS V +Y + V EVKT + H IT +AFS LV++ ++
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 950 CMWSI 954
+S+
Sbjct: 516 IPYSV 520
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT---- 919
V++F FK + F + ++P D ++ A D ++ +YN VD KT
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN-GVDGTKTGVFE 229
Query: 920 ----KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954
K H + GL +SP + S+ AD + +W++
Sbjct: 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
H ++ H+ V+D F ++C +D +IK+ D G T+EGHE+ VY +
Sbjct: 183 HNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I W +MD + +L T+ ADG + A P L R KE + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 654 NG 655
+G
Sbjct: 103 SG 104
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 100/268 (37%), Gaps = 49/268 (18%)
Query: 389 VWDISAASMPLQNALL-NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
VW+ + S+ +AL D + V W DG L V +V +Y +LR
Sbjct: 117 VWNADSGSV---SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173
Query: 448 EIDAHVGGV------------------NDIAFAHP--------NKQLC----------IV 471
A VG + +D+ A+ + ++C +
Sbjct: 174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYD 529
+ G+D ++++WD + ++T H A V +V CP + T +D +I W
Sbjct: 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFW-NA 291
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS--GFR 587
G+RV+ G+ T + +S + S T +++L W+ S + +
Sbjct: 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIPAHD 349
Query: 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
R L R AA DE +KFW
Sbjct: 350 TRVLYSALSPDGRILSTAASDE-NLKFW 376
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 1017 LPAPISSAIYSCDGLLVYAGFCDGAIGVFD--AETLRFRCRIGPSAYIPTYAVSNTAHPL 1074
+ AP++ YS DG Y F G G F A L R + P A + TY + TA
Sbjct: 519 MAAPVT---YSVDGEQ-YVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTAKLQ 574
Query: 1075 VIAPHPSEPNQIAL 1088
AP P P AL
Sbjct: 575 EPAPRPDTPKPPAL 588
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL 638
N+ A G F I W +MD + +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWE 375
V S+++HP T + VG+ GDI LW+
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW--EVGSRERLAHKP 386
+Y Q D+ VR + V H + +T+L VGT G +++W + G+R+ A +
Sbjct: 35 LYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEA 94
Query: 387 FKVWDISAASMPLQN 401
K+ D + A + N
Sbjct: 95 TKMADHARALVKANN 109
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWE 375
V S+++HP T + VG+ GDI LW+
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
Length = 197
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 531 LGSRVDYDAPGNWC---TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKR 581
+G R D P N T A A+ LF SK ++ +V S+G AIKR
Sbjct: 63 VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122
Query: 582 TYSGFRKRSLGVVQFDTTRN 601
+ + + GVV F TRN
Sbjct: 123 LSADVQDKIKGVVLFGYTRN 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,890,220
Number of Sequences: 62578
Number of extensions: 1410531
Number of successful extensions: 4165
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 3411
Number of HSP's gapped (non-prelim): 596
length of query: 1135
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1026
effective length of database: 8,152,335
effective search space: 8364295710
effective search space used: 8364295710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)