Query 001159
Match_columns 1135
No_of_seqs 856 out of 5118
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 17:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.1E-67 4.5E-72 523.4 36.4 490 5-663 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.4E-61 3.1E-66 466.0 33.4 489 5-660 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.5E-57 5.4E-62 485.3 48.4 572 352-1103 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 9.3E-56 2E-60 473.3 46.6 568 318-1051 25-622 (775)
5 KOG0318 WD40 repeat stress pro 100.0 4.3E-50 9.2E-55 412.9 62.4 570 352-1101 24-602 (603)
6 KOG0318 WD40 repeat stress pro 100.0 1.6E-50 3.5E-55 416.0 56.2 552 323-1003 37-601 (603)
7 KOG0291 WD40-repeat-containing 100.0 1.4E-49 3.1E-54 425.5 60.4 568 343-1102 52-710 (893)
8 KOG0291 WD40-repeat-containing 100.0 4.6E-49 1E-53 421.6 56.9 587 312-1056 55-717 (893)
9 KOG0306 WD40-repeat-containing 100.0 5.3E-49 1.1E-53 421.0 50.4 505 344-1005 63-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 1.3E-48 2.7E-53 418.1 51.5 577 356-1107 32-670 (888)
11 KOG0271 Notchless-like WD40 re 100.0 2.4E-51 5.3E-56 405.1 27.6 367 404-953 111-479 (480)
12 KOG0271 Notchless-like WD40 re 100.0 5.6E-50 1.2E-54 395.4 29.1 296 341-671 109-447 (480)
13 KOG1408 WD40 repeat protein [F 100.0 1.3E-42 2.9E-47 368.3 41.7 625 351-1102 42-714 (1080)
14 KOG0263 Transcription initiati 100.0 9.9E-43 2.1E-47 378.7 37.6 562 3-620 19-651 (707)
15 KOG0273 Beta-transducin family 100.0 7.8E-42 1.7E-46 347.7 34.7 308 336-670 168-489 (524)
16 KOG1539 WD repeat protein [Gen 100.0 7.9E-38 1.7E-42 340.0 57.8 584 352-1101 39-648 (910)
17 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-41 2.3E-46 342.3 22.9 282 345-660 174-458 (459)
18 KOG1408 WD40 repeat protein [F 100.0 4E-39 8.6E-44 342.0 42.7 572 345-1049 77-714 (1080)
19 KOG0272 U4/U6 small nuclear ri 100.0 7.1E-41 1.5E-45 336.4 24.2 257 406-675 173-430 (459)
20 KOG0276 Vesicle coat complex C 100.0 3.5E-38 7.6E-43 331.0 45.3 475 345-1003 12-489 (794)
21 KOG0286 G-protein beta subunit 100.0 1E-38 2.2E-43 305.6 33.8 292 339-660 47-343 (343)
22 KOG1063 RNA polymerase II elon 100.0 3.2E-37 7E-42 328.5 44.7 632 329-1101 36-763 (764)
23 KOG0279 G protein beta subunit 100.0 7E-38 1.5E-42 298.2 33.0 298 338-662 6-313 (315)
24 KOG1539 WD repeat protein [Gen 100.0 2.4E-35 5.3E-40 320.7 54.1 556 345-1049 75-649 (910)
25 KOG0286 G-protein beta subunit 100.0 2.9E-37 6.3E-42 295.6 31.6 248 404-664 51-305 (343)
26 KOG0292 Vesicle coat complex C 100.0 4.6E-36 9.9E-41 326.7 44.6 582 345-1104 8-597 (1202)
27 KOG0276 Vesicle coat complex C 100.0 1.7E-35 3.7E-40 310.9 43.6 473 404-1101 9-490 (794)
28 KOG1063 RNA polymerase II elon 100.0 4.1E-35 8.9E-40 312.5 45.5 538 352-1101 20-699 (764)
29 KOG0315 G-protein beta subunit 100.0 1.8E-36 3.9E-41 283.1 29.1 287 357-677 8-302 (311)
30 KOG2106 Uncharacterized conser 100.0 9.6E-34 2.1E-38 290.6 49.6 525 351-1047 70-625 (626)
31 KOG0295 WD40 repeat-containing 100.0 3E-36 6.6E-41 297.4 27.0 309 320-661 82-405 (406)
32 KOG0296 Angio-associated migra 100.0 5.4E-35 1.2E-39 288.9 35.3 339 448-955 59-398 (399)
33 KOG0279 G protein beta subunit 100.0 6.3E-35 1.4E-39 278.2 32.3 296 769-1102 12-314 (315)
34 KOG0315 G-protein beta subunit 100.0 6.5E-35 1.4E-39 272.8 31.5 295 512-934 11-309 (311)
35 KOG0284 Polyadenylation factor 100.0 3E-36 6.5E-41 301.5 20.7 343 285-662 24-380 (464)
36 KOG0285 Pleiotropic regulator 100.0 2.3E-35 4.9E-40 289.6 25.9 295 335-663 139-440 (460)
37 KOG0273 Beta-transducin family 100.0 2.6E-34 5.6E-39 293.0 32.5 281 345-662 234-523 (524)
38 KOG0296 Angio-associated migra 100.0 9.4E-34 2E-38 280.1 34.9 329 404-913 60-398 (399)
39 KOG2106 Uncharacterized conser 100.0 6.5E-32 1.4E-36 277.2 47.8 524 413-1100 70-625 (626)
40 KOG0645 WD40 repeat protein [G 100.0 1.8E-33 3.8E-38 267.0 32.3 291 339-662 6-311 (312)
41 KOG0265 U5 snRNP-specific prot 100.0 1.5E-33 3.2E-38 271.6 27.9 285 344-660 45-336 (338)
42 KOG2048 WD40 repeat protein [G 100.0 2.3E-30 5.1E-35 276.4 55.0 549 407-1101 24-601 (691)
43 KOG0292 Vesicle coat complex C 100.0 1.1E-31 2.5E-36 292.7 44.7 386 404-955 5-397 (1202)
44 KOG0295 WD40 repeat-containing 100.0 1.2E-33 2.6E-38 279.0 26.1 305 488-954 99-405 (406)
45 KOG0285 Pleiotropic regulator 100.0 1.4E-33 3E-38 277.1 25.9 247 402-664 145-391 (460)
46 KOG0265 U5 snRNP-specific prot 100.0 3.5E-33 7.5E-38 269.0 27.5 254 400-664 39-298 (338)
47 KOG0266 WD40 repeat-containing 100.0 1.4E-32 3.1E-37 313.6 33.4 286 345-662 158-454 (456)
48 KOG0263 Transcription initiati 100.0 4.7E-33 1E-37 303.5 23.8 247 407-664 377-651 (707)
49 KOG0293 WD40 repeat-containing 100.0 2.3E-32 5E-37 273.6 26.2 292 403-913 219-513 (519)
50 KOG2048 WD40 repeat protein [G 100.0 5.7E-29 1.2E-33 265.8 53.6 503 451-1104 23-551 (691)
51 KOG0316 Conserved WD40 repeat- 100.0 5.6E-32 1.2E-36 250.9 25.0 286 339-661 9-298 (307)
52 KOG1445 Tumor-specific antigen 100.0 1.4E-30 3.1E-35 273.5 36.7 645 340-1052 72-848 (1012)
53 KOG0284 Polyadenylation factor 100.0 6E-33 1.3E-37 277.9 17.4 241 407-662 95-337 (464)
54 KOG0266 WD40 repeat-containing 100.0 2.9E-31 6.4E-36 302.8 33.1 291 771-1101 158-454 (456)
55 KOG0281 Beta-TrCP (transducin 100.0 6.8E-33 1.5E-37 270.8 16.2 272 346-665 197-480 (499)
56 cd00200 WD40 WD40 domain, foun 100.0 1.4E-30 3E-35 285.8 36.6 282 345-660 8-289 (289)
57 KOG0282 mRNA splicing factor [ 100.0 1.3E-32 2.8E-37 282.2 18.4 294 335-660 202-503 (503)
58 KOG0282 mRNA splicing factor [ 100.0 2E-32 4.4E-37 280.7 19.2 291 446-911 207-503 (503)
59 KOG0645 WD40 repeat protein [G 100.0 3.3E-30 7.1E-35 244.9 32.7 242 404-662 10-261 (312)
60 KOG0275 Conserved WD40 repeat- 100.0 2.6E-32 5.6E-37 264.1 16.9 290 773-1099 214-507 (508)
61 KOG0281 Beta-TrCP (transducin 100.0 1.9E-31 4.1E-36 260.8 16.3 232 407-664 196-430 (499)
62 PLN00181 protein SPA1-RELATED; 100.0 3.4E-29 7.4E-34 309.4 40.4 291 345-661 482-792 (793)
63 KOG0316 Conserved WD40 repeat- 100.0 4.1E-30 8.8E-35 238.6 23.1 247 402-664 11-259 (307)
64 KOG0313 Microtubule binding pr 100.0 7E-30 1.5E-34 253.9 25.6 291 334-661 93-417 (423)
65 KOG0278 Serine/threonine kinas 100.0 1.5E-30 3.2E-35 243.5 18.3 284 343-664 11-299 (334)
66 cd00200 WD40 WD40 domain, foun 100.0 1E-28 2.2E-33 270.9 35.6 247 404-664 5-251 (289)
67 KOG1445 Tumor-specific antigen 100.0 5.2E-28 1.1E-32 254.4 37.9 665 403-1105 74-848 (1012)
68 KOG0288 WD40 repeat protein Ti 100.0 4.2E-30 9E-35 258.2 18.3 294 333-659 161-458 (459)
69 KOG0310 Conserved WD40 repeat- 100.0 7.6E-29 1.6E-33 255.3 27.4 283 345-661 25-308 (487)
70 PLN00181 protein SPA1-RELATED; 100.0 4.2E-28 9.1E-33 299.7 39.6 271 368-664 457-740 (793)
71 KOG0641 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 220.0 32.1 310 337-662 23-349 (350)
72 KOG0973 Histone transcription 100.0 2.5E-28 5.5E-33 276.3 29.1 306 345-664 12-357 (942)
73 KOG0278 Serine/threonine kinas 100.0 4.6E-29 1E-33 233.5 18.1 291 533-958 6-300 (334)
74 KOG0277 Peroxisomal targeting 100.0 3E-28 6.4E-33 229.2 21.5 284 350-661 12-308 (311)
75 KOG0643 Translation initiation 100.0 2.9E-27 6.4E-32 224.1 27.7 286 343-664 7-319 (327)
76 PTZ00421 coronin; Provisional 100.0 7.8E-27 1.7E-31 264.0 35.5 287 347-644 21-315 (493)
77 KOG0643 Translation initiation 100.0 6.7E-27 1.5E-31 221.7 27.8 235 403-653 5-252 (327)
78 KOG0283 WD40 repeat-containing 100.0 1.1E-27 2.4E-32 264.3 25.1 301 344-664 265-578 (712)
79 KOG0313 Microtubule binding pr 100.0 3.7E-27 8E-32 234.7 26.2 282 451-912 103-417 (423)
80 KOG1446 Histone H3 (Lys4) meth 100.0 4.9E-26 1.1E-30 222.8 33.5 282 345-662 13-303 (311)
81 KOG0772 Uncharacterized conser 100.0 2E-27 4.2E-32 245.1 24.9 297 771-1103 165-490 (641)
82 KOG0274 Cdc4 and related F-box 100.0 5.4E-27 1.2E-31 264.8 30.9 283 345-671 207-490 (537)
83 KOG0640 mRNA cleavage stimulat 100.0 2.2E-27 4.8E-32 229.1 22.8 312 337-661 103-425 (430)
84 KOG1407 WD40 repeat protein [F 100.0 2.8E-26 6.1E-31 216.9 29.1 274 345-653 19-293 (313)
85 KOG0305 Anaphase promoting com 100.0 6E-27 1.3E-31 252.8 27.9 279 349-664 180-463 (484)
86 KOG0647 mRNA export protein (c 100.0 1.3E-26 2.8E-31 223.9 26.8 274 345-651 26-312 (347)
87 KOG0310 Conserved WD40 repeat- 100.0 7E-27 1.5E-31 240.9 26.4 284 772-1104 26-312 (487)
88 KOG1407 WD40 repeat protein [F 100.0 2.4E-26 5.2E-31 217.4 27.6 277 448-905 15-294 (313)
89 KOG0277 Peroxisomal targeting 100.0 2.1E-27 4.6E-32 223.5 19.6 270 320-617 34-308 (311)
90 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-25 3.3E-30 219.4 31.8 249 841-1108 14-269 (311)
91 KOG0294 WD40 repeat-containing 100.0 8E-26 1.7E-30 219.8 29.1 240 838-1104 41-284 (362)
92 KOG0308 Conserved WD40 repeat- 100.0 7.9E-27 1.7E-31 247.7 23.7 288 351-663 29-328 (735)
93 KOG0640 mRNA cleavage stimulat 99.9 1.4E-26 3E-31 223.6 21.7 253 404-664 108-385 (430)
94 KOG0305 Anaphase promoting com 99.9 3.6E-26 7.8E-31 246.8 26.6 261 329-620 199-463 (484)
95 KOG0299 U3 snoRNP-associated p 99.9 6.4E-26 1.4E-30 231.8 26.8 294 344-659 140-453 (479)
96 KOG0288 WD40 repeat protein Ti 99.9 3.4E-27 7.3E-32 237.4 17.1 247 404-664 171-419 (459)
97 KOG0308 Conserved WD40 repeat- 99.9 1.1E-26 2.3E-31 246.8 21.7 242 413-664 29-287 (735)
98 KOG0283 WD40 repeat-containing 99.9 3.2E-26 6.9E-31 252.9 26.4 272 770-1050 265-578 (712)
99 PTZ00420 coronin; Provisional 99.9 3.3E-25 7.2E-30 251.0 33.9 256 365-644 50-318 (568)
100 KOG0973 Histone transcription 99.9 4.7E-26 1E-30 258.0 26.6 300 773-1104 14-358 (942)
101 KOG0289 mRNA splicing factor [ 99.9 2.1E-25 4.6E-30 225.7 28.4 282 347-661 220-505 (506)
102 PTZ00421 coronin; Provisional 99.9 2.9E-25 6.3E-30 251.3 32.9 250 407-664 19-292 (493)
103 KOG0772 Uncharacterized conser 99.9 6.9E-26 1.5E-30 233.7 24.5 301 336-660 156-485 (641)
104 KOG0274 Cdc4 and related F-box 99.9 2.2E-25 4.9E-30 251.8 29.2 236 407-664 207-443 (537)
105 KOG0300 WD40 repeat-containing 99.9 8.9E-26 1.9E-30 218.5 22.1 297 336-664 137-478 (481)
106 KOG0300 WD40 repeat-containing 99.9 1.1E-25 2.5E-30 217.7 21.8 331 578-1050 139-478 (481)
107 KOG0294 WD40 repeat-containing 99.9 7.1E-25 1.5E-29 213.2 27.1 278 362-664 4-283 (362)
108 KOG0301 Phospholipase A2-activ 99.9 4.2E-25 9E-30 236.7 27.7 283 337-663 4-289 (745)
109 KOG0641 WD40 repeat protein [G 99.9 7.5E-24 1.6E-28 195.4 31.3 307 771-1101 31-349 (350)
110 KOG0299 U3 snoRNP-associated p 99.9 4.5E-25 9.7E-30 225.7 25.4 252 404-666 138-414 (479)
111 KOG2096 WD40 repeat protein [G 99.9 1.4E-24 3E-29 210.9 27.3 253 777-1049 136-403 (420)
112 KOG0647 mRNA export protein (c 99.9 9.9E-25 2.1E-29 211.0 26.0 248 406-664 25-283 (347)
113 KOG0268 Sof1-like rRNA process 99.9 2.7E-26 5.8E-31 226.9 15.4 287 340-664 59-347 (433)
114 KOG1274 WD40 repeat protein [G 99.9 1.4E-21 3E-26 216.8 51.1 276 345-659 12-297 (933)
115 KOG1036 Mitotic spindle checkp 99.9 5.7E-24 1.2E-28 207.0 28.3 269 345-652 12-294 (323)
116 KOG0289 mRNA splicing factor [ 99.9 2.5E-24 5.3E-29 218.0 26.1 239 409-660 220-460 (506)
117 PTZ00420 coronin; Provisional 99.9 1.2E-23 2.5E-28 238.5 33.9 228 426-664 50-295 (568)
118 KOG1963 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 222.8 42.5 511 412-1055 20-590 (792)
119 KOG2096 WD40 repeat protein [G 99.9 6.4E-24 1.4E-28 206.3 26.2 221 400-663 78-309 (420)
120 KOG0264 Nucleosome remodeling 99.9 2E-24 4.2E-29 221.6 23.5 265 338-618 116-404 (422)
121 KOG0639 Transducin-like enhanc 99.9 8E-25 1.7E-29 224.8 20.5 293 338-661 411-703 (705)
122 KOG0268 Sof1-like rRNA process 99.9 2.5E-25 5.4E-30 220.1 15.9 200 448-664 61-261 (433)
123 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.5E-29 204.0 18.4 252 404-662 7-286 (299)
124 KOG1963 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 219.9 41.4 509 457-1107 20-589 (792)
125 KOG0301 Phospholipase A2-activ 99.9 5.7E-24 1.2E-28 228.1 24.3 274 770-1101 12-288 (745)
126 KOG4283 Transcription-coupled 99.9 3.5E-23 7.6E-28 199.0 25.5 300 345-661 42-364 (397)
127 KOG1036 Mitotic spindle checkp 99.9 6.5E-23 1.4E-27 199.7 27.1 241 407-664 12-264 (323)
128 KOG0639 Transducin-like enhanc 99.9 2.2E-23 4.7E-28 214.3 21.2 282 771-1100 418-703 (705)
129 KOG0264 Nucleosome remodeling 99.9 4.3E-23 9.4E-28 211.8 22.2 252 405-663 121-405 (422)
130 KOG1273 WD40 repeat protein [G 99.9 1.9E-22 4.2E-27 195.9 24.9 295 335-664 13-324 (405)
131 KOG1273 WD40 repeat protein [G 99.9 1.4E-22 2.9E-27 197.0 22.1 253 411-675 26-292 (405)
132 KOG1538 Uncharacterized conser 99.9 2.9E-21 6.3E-26 205.1 33.9 273 348-663 14-294 (1081)
133 KOG1332 Vesicle coat complex C 99.9 6.3E-23 1.4E-27 192.4 18.2 252 345-619 10-287 (299)
134 KOG0267 Microtubule severing p 99.9 4.2E-24 9.2E-29 229.8 11.2 235 405-653 25-259 (825)
135 KOG1274 WD40 repeat protein [G 99.9 7.5E-22 1.6E-26 219.0 29.1 283 771-1098 12-297 (933)
136 KOG0646 WD40 repeat protein [G 99.9 7E-22 1.5E-26 203.0 26.7 293 566-988 17-332 (476)
137 KOG2055 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 203.1 25.4 288 590-1048 215-512 (514)
138 KOG0646 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 206.8 22.2 254 359-643 51-330 (476)
139 KOG2055 WD40 repeat protein [G 99.9 4.4E-22 9.5E-27 203.7 24.2 288 346-662 213-512 (514)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-20 3.5E-25 207.4 38.9 292 469-935 3-300 (300)
141 KOG4328 WD40 protein [Function 99.9 9.6E-22 2.1E-26 201.1 25.1 299 340-662 179-495 (498)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 206.8 35.6 275 361-671 3-287 (300)
143 KOG4283 Transcription-coupled 99.9 2.4E-21 5.2E-26 186.4 23.5 245 770-1048 99-365 (397)
144 KOG0650 WD40 repeat nucleolar 99.9 4.3E-21 9.2E-26 202.3 26.9 318 446-952 393-732 (733)
145 KOG0270 WD40 repeat-containing 99.9 2.5E-21 5.5E-26 197.6 24.0 248 419-672 191-459 (463)
146 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.3E-26 213.3 20.3 297 346-664 39-342 (839)
147 KOG0321 WD40 repeat-containing 99.9 3.5E-21 7.5E-26 204.8 23.5 290 351-664 54-393 (720)
148 KOG0269 WD40 repeat-containing 99.9 7.3E-22 1.6E-26 214.6 17.8 249 348-621 89-343 (839)
149 KOG0650 WD40 repeat nucleolar 99.9 9.8E-21 2.1E-25 199.6 24.3 327 580-1002 393-733 (733)
150 KOG0321 WD40 repeat-containing 99.9 9.1E-21 2E-25 201.6 23.0 290 786-1104 65-394 (720)
151 KOG2445 Nuclear pore complex c 99.9 3.7E-20 8E-25 180.0 25.1 255 404-662 9-318 (361)
152 KOG2445 Nuclear pore complex c 99.9 1E-19 2.2E-24 177.0 26.5 258 839-1101 12-318 (361)
153 KOG1538 Uncharacterized conser 99.9 8.3E-20 1.8E-24 194.1 27.8 273 543-955 14-293 (1081)
154 KOG1034 Transcriptional repres 99.9 5.4E-20 1.2E-24 180.4 22.8 298 337-662 27-383 (385)
155 KOG0307 Vesicle coat complex C 99.9 2.8E-21 6E-26 220.4 15.6 252 407-664 63-329 (1049)
156 KOG0267 Microtubule severing p 99.9 8.2E-22 1.8E-26 212.4 10.7 233 345-609 27-259 (825)
157 KOG1009 Chromatin assembly com 99.9 2.2E-19 4.9E-24 181.4 25.7 303 345-664 12-374 (434)
158 KOG2919 Guanine nucleotide-bin 99.8 3E-19 6.5E-24 174.6 22.3 289 348-653 51-361 (406)
159 COG2319 FOG: WD40 repeat [Gene 99.8 7.8E-17 1.7E-21 188.9 47.4 374 448-956 60-443 (466)
160 KOG1034 Transcriptional repres 99.8 3.4E-19 7.3E-24 174.9 21.7 301 770-1101 36-383 (385)
161 KOG4328 WD40 protein [Function 99.8 5.9E-19 1.3E-23 180.9 24.4 209 448-662 181-399 (498)
162 KOG0302 Ribosome Assembly prot 99.8 3.1E-19 6.6E-24 178.3 21.7 267 336-615 141-435 (440)
163 KOG4497 Uncharacterized conser 99.8 6.9E-19 1.5E-23 172.3 21.4 407 413-948 13-425 (447)
164 COG2319 FOG: WD40 repeat [Gene 99.8 2.9E-16 6.3E-21 184.1 48.5 371 404-914 61-443 (466)
165 KOG4378 Nuclear protein COP1 [ 99.8 8.6E-19 1.9E-23 180.6 22.0 294 320-644 7-305 (673)
166 KOG0302 Ribosome Assembly prot 99.8 1E-18 2.3E-23 174.5 21.8 249 404-660 147-436 (440)
167 KOG4378 Nuclear protein COP1 [ 99.8 5.3E-19 1.2E-23 182.2 20.0 286 368-682 11-300 (673)
168 KOG0307 Vesicle coat complex C 99.8 1.5E-19 3.2E-24 206.5 17.3 263 338-621 56-330 (1049)
169 KOG0270 WD40 repeat-containing 99.8 6.3E-19 1.4E-23 180.3 19.8 264 347-623 174-454 (463)
170 KOG0303 Actin-binding protein 99.8 2.2E-18 4.7E-23 173.2 21.7 234 403-643 76-320 (472)
171 KOG1524 WD40 repeat-containing 99.8 9.2E-17 2E-21 167.5 34.0 490 406-1050 12-525 (737)
172 KOG0303 Actin-binding protein 99.8 1.9E-18 4.2E-23 173.5 20.9 252 410-669 29-301 (472)
173 KOG1912 WD40 repeat protein [G 99.8 1.1E-16 2.4E-21 174.0 35.0 243 345-619 14-305 (1062)
174 KOG2919 Guanine nucleotide-bin 99.8 1.8E-17 3.9E-22 162.3 25.8 226 783-1039 121-361 (406)
175 KOG1009 Chromatin assembly com 99.8 3.9E-17 8.5E-22 165.3 26.5 299 773-1104 14-375 (434)
176 KOG1524 WD40 repeat-containing 99.8 4.9E-17 1.1E-21 169.5 26.4 270 345-660 13-284 (737)
177 KOG1310 WD40 repeat protein [G 99.8 5.1E-17 1.1E-21 169.8 23.5 247 403-671 45-312 (758)
178 KOG4497 Uncharacterized conser 99.8 6.7E-17 1.5E-21 158.5 22.1 377 547-1094 14-425 (447)
179 KOG0649 WD40 repeat protein [G 99.8 4.2E-16 9.1E-21 146.6 26.2 286 777-1098 14-313 (325)
180 KOG0322 G-protein beta subunit 99.8 1.5E-17 3.3E-22 158.3 16.1 308 580-954 7-322 (323)
181 KOG0642 Cell-cycle nuclear pro 99.8 5.7E-18 1.2E-22 178.6 14.3 251 404-664 290-563 (577)
182 KOG1188 WD40 repeat protein [G 99.8 7.1E-17 1.5E-21 159.8 20.5 276 360-663 41-347 (376)
183 KOG0290 Conserved WD40 repeat- 99.8 3.2E-16 7E-21 151.4 24.0 291 338-658 36-361 (364)
184 KOG0322 G-protein beta subunit 99.7 3.5E-17 7.7E-22 155.9 16.1 288 340-661 7-322 (323)
185 KOG0649 WD40 repeat protein [G 99.7 7.1E-16 1.5E-20 145.1 24.5 281 348-659 12-313 (325)
186 KOG4227 WD40 repeat protein [G 99.7 2.1E-16 4.5E-21 158.2 22.3 292 343-662 53-387 (609)
187 KOG1188 WD40 repeat protein [G 99.7 5.3E-17 1.1E-21 160.8 17.2 292 469-802 42-345 (376)
188 KOG0642 Cell-cycle nuclear pro 99.7 2.5E-17 5.5E-22 173.8 15.7 268 341-629 288-572 (577)
189 KOG1007 WD repeat protein TSSC 99.7 3.3E-16 7.1E-21 151.1 21.6 256 344-618 61-361 (370)
190 KOG1912 WD40 repeat protein [G 99.7 3.7E-15 8.1E-20 162.4 32.4 496 408-1027 15-572 (1062)
191 KOG0644 Uncharacterized conser 99.7 1.2E-17 2.6E-22 182.9 12.9 279 342-664 186-470 (1113)
192 KOG4227 WD40 repeat protein [G 99.7 4.3E-16 9.3E-21 156.0 22.2 300 535-955 50-387 (609)
193 PRK11028 6-phosphogluconolacto 99.7 5.1E-15 1.1E-19 164.5 32.7 248 841-1104 34-307 (330)
194 KOG1007 WD repeat protein TSSC 99.7 2E-16 4.2E-21 152.7 18.1 215 337-574 112-360 (370)
195 KOG1334 WD40 repeat protein [G 99.7 3.8E-17 8.1E-22 169.0 14.1 298 340-664 135-468 (559)
196 KOG1587 Cytoplasmic dynein int 99.7 7.8E-16 1.7E-20 172.7 25.6 272 327-619 224-517 (555)
197 KOG2110 Uncharacterized conser 99.7 2E-14 4.4E-19 144.3 31.8 242 408-664 5-250 (391)
198 PRK11028 6-phosphogluconolacto 99.7 1.9E-14 4.2E-19 159.8 34.3 273 361-662 4-304 (330)
199 KOG0644 Uncharacterized conser 99.7 6E-17 1.3E-21 177.5 12.3 288 533-959 182-472 (1113)
200 KOG1517 Guanine nucleotide bin 99.7 4.6E-15 9.9E-20 167.2 26.3 258 777-1051 1113-1384(1387)
201 KOG1523 Actin-related protein 99.7 6E-15 1.3E-19 145.1 23.9 228 346-599 10-260 (361)
202 KOG0290 Conserved WD40 repeat- 99.7 4.1E-15 9E-20 143.8 20.7 254 340-614 90-361 (364)
203 KOG1517 Guanine nucleotide bin 99.7 9.2E-15 2E-19 164.8 25.8 291 348-664 1066-1383(1387)
204 KOG0771 Prolactin regulatory e 99.7 8.6E-16 1.9E-20 157.3 16.1 200 886-1103 148-356 (398)
205 KOG1587 Cytoplasmic dynein int 99.7 8.4E-15 1.8E-19 164.4 25.4 250 407-664 241-518 (555)
206 PRK01742 tolB translocation pr 99.7 8.1E-15 1.7E-19 167.7 25.2 235 368-643 183-426 (429)
207 KOG2110 Uncharacterized conser 99.7 5.9E-14 1.3E-18 141.1 27.4 240 841-1104 5-251 (391)
208 KOG0771 Prolactin regulatory e 99.7 1.5E-15 3.2E-20 155.7 14.8 197 845-1049 148-355 (398)
209 PF02239 Cytochrom_D1: Cytochr 99.6 5.7E-13 1.2E-17 146.5 35.9 332 468-962 7-354 (369)
210 KOG1240 Protein kinase contain 99.6 5.8E-14 1.3E-18 161.3 28.4 255 404-664 1044-1336(1431)
211 KOG0974 WD-repeat protein WDR6 99.6 5.3E-12 1.1E-16 144.0 43.1 197 347-576 88-289 (967)
212 PF02239 Cytochrom_D1: Cytochr 99.6 5.4E-13 1.2E-17 146.7 33.0 271 565-958 14-305 (369)
213 KOG2321 WD40 repeat protein [G 99.6 4.9E-14 1.1E-18 149.0 22.9 286 338-662 43-343 (703)
214 KOG1832 HIV-1 Vpr-binding prot 99.6 9.5E-16 2.1E-20 168.7 10.2 301 168-606 1012-1319(1516)
215 KOG1334 WD40 repeat protein [G 99.6 1.3E-14 2.8E-19 150.4 16.7 262 404-673 138-434 (559)
216 KOG2139 WD40 repeat protein [G 99.6 4.2E-13 9.1E-18 134.2 26.2 284 346-661 98-430 (445)
217 COG4946 Uncharacterized protei 99.6 7.8E-11 1.7E-15 122.1 42.9 522 330-1049 62-655 (668)
218 KOG2041 WD40 repeat protein [G 99.6 3.4E-12 7.4E-17 138.1 34.4 537 346-1003 14-618 (1189)
219 KOG1240 Protein kinase contain 99.6 1.9E-13 4.1E-18 157.1 26.1 270 335-620 1036-1336(1431)
220 COG4946 Uncharacterized protei 99.6 8.6E-11 1.9E-15 121.8 42.4 139 777-944 363-507 (668)
221 PRK01742 tolB translocation pr 99.6 6.1E-14 1.3E-18 160.5 22.1 234 328-599 185-426 (429)
222 KOG2139 WD40 repeat protein [G 99.6 4.2E-13 9.1E-18 134.2 24.7 284 773-1101 99-431 (445)
223 KOG0974 WD-repeat protein WDR6 99.6 1.2E-11 2.5E-16 141.3 38.3 278 347-664 8-290 (967)
224 KOG2111 Uncharacterized conser 99.6 7.7E-13 1.7E-17 130.5 24.5 239 410-664 7-258 (346)
225 PF04762 IKI3: IKI3 family; I 99.6 6.9E-09 1.5E-13 127.0 63.7 537 406-1053 73-689 (928)
226 KOG1523 Actin-related protein 99.6 2.3E-13 5E-18 134.1 20.1 235 407-653 9-269 (361)
227 PRK03629 tolB translocation pr 99.6 1.6E-12 3.6E-17 148.1 29.9 237 370-642 180-427 (429)
228 KOG1272 WD40-repeat-containing 99.6 1.5E-14 3.2E-19 149.1 11.7 279 347-664 130-411 (545)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 6.5E-13 1.4E-17 139.6 21.3 252 348-641 125-383 (636)
230 KOG1272 WD40-repeat-containing 99.5 3.5E-14 7.6E-19 146.4 10.3 231 409-660 130-360 (545)
231 KOG2394 WD40 protein DMR-N9 [G 99.5 3.8E-13 8.3E-18 141.3 17.6 210 740-958 190-455 (636)
232 PRK05137 tolB translocation pr 99.5 6.6E-12 1.4E-16 144.4 29.6 237 369-642 182-432 (435)
233 PRK03629 tolB translocation pr 99.5 2.2E-12 4.8E-17 147.1 25.3 238 327-598 179-427 (429)
234 KOG3881 Uncharacterized conser 99.5 2.6E-12 5.6E-17 130.4 22.2 272 346-642 55-341 (412)
235 KOG2041 WD40 repeat protein [G 99.5 1.6E-10 3.5E-15 125.4 37.1 516 339-956 63-620 (1189)
236 PRK02889 tolB translocation pr 99.5 3.7E-12 8.1E-17 145.5 26.6 224 405-642 192-424 (427)
237 PRK04922 tolB translocation pr 99.5 3E-12 6.4E-17 147.0 25.3 238 369-642 184-432 (433)
238 PRK02889 tolB translocation pr 99.5 3.1E-12 6.6E-17 146.2 24.8 239 326-598 175-424 (427)
239 KOG2111 Uncharacterized conser 99.5 5.7E-11 1.2E-15 117.6 29.7 239 348-619 7-257 (346)
240 PRK04922 tolB translocation pr 99.5 3.5E-12 7.6E-17 146.4 24.5 237 328-598 185-432 (433)
241 KOG1310 WD40 repeat protein [G 99.5 2.7E-13 5.9E-18 142.4 13.7 238 345-626 49-311 (758)
242 KOG1409 Uncharacterized conser 99.5 2.5E-12 5.5E-17 128.0 19.7 344 579-1049 16-395 (404)
243 PF04762 IKI3: IKI3 family; I 99.5 3.7E-08 8.1E-13 120.7 59.8 516 409-1101 22-639 (928)
244 KOG2315 Predicted translation 99.5 9.2E-11 2E-15 125.0 30.6 281 347-664 35-346 (566)
245 KOG2314 Translation initiation 99.5 1.5E-11 3.4E-16 129.8 24.5 318 315-664 213-575 (698)
246 COG2706 3-carboxymuconate cycl 99.4 2.6E-10 5.6E-15 116.0 30.7 281 744-1053 15-328 (346)
247 COG5354 Uncharacterized protei 99.4 3.2E-10 7E-15 119.3 31.1 359 524-1040 15-421 (561)
248 KOG2315 Predicted translation 99.4 3.8E-10 8.3E-15 120.4 31.4 334 542-1028 35-410 (566)
249 KOG2321 WD40 repeat protein [G 99.4 6E-11 1.3E-15 126.0 24.8 202 451-664 49-260 (703)
250 PF10282 Lactonase: Lactonase, 99.4 3.5E-10 7.5E-15 125.4 32.4 254 777-1055 40-331 (345)
251 PRK05137 tolB translocation pr 99.4 3.5E-11 7.6E-16 138.4 25.1 239 326-598 181-432 (435)
252 KOG1354 Serine/threonine prote 99.4 4.3E-11 9.4E-16 119.2 21.8 262 345-621 24-362 (433)
253 COG5354 Uncharacterized protei 99.4 2.8E-10 6.1E-15 119.7 27.8 314 314-664 34-397 (561)
254 KOG1354 Serine/threonine prote 99.4 1.8E-10 3.9E-15 114.9 25.0 193 453-664 25-246 (433)
255 KOG3881 Uncharacterized conser 99.4 4.5E-11 9.7E-16 121.6 21.3 250 407-669 54-327 (412)
256 PRK01029 tolB translocation pr 99.4 9E-11 1.9E-15 133.1 26.6 244 327-600 165-426 (428)
257 COG2706 3-carboxymuconate cycl 99.4 2E-09 4.3E-14 109.7 32.0 254 841-1109 39-329 (346)
258 PF08662 eIF2A: Eukaryotic tra 99.4 4.7E-11 1E-15 119.0 20.2 110 841-956 59-180 (194)
259 PRK01029 tolB translocation pr 99.3 5.6E-10 1.2E-14 126.7 29.7 226 406-644 182-426 (428)
260 PRK00178 tolB translocation pr 99.3 2.2E-10 4.7E-15 132.4 26.0 237 329-598 181-427 (430)
261 PF08662 eIF2A: Eukaryotic tra 99.3 1.2E-10 2.7E-15 116.0 20.6 164 411-583 8-186 (194)
262 PRK04792 tolB translocation pr 99.3 4.1E-10 8.9E-15 129.0 27.6 222 405-642 214-446 (448)
263 PRK00178 tolB translocation pr 99.3 7.2E-10 1.6E-14 128.0 29.4 222 405-642 195-427 (430)
264 PRK04792 tolB translocation pr 99.3 1.8E-10 3.8E-15 132.0 23.9 236 330-598 201-446 (448)
265 PF10282 Lactonase: Lactonase, 99.3 7.9E-09 1.7E-13 114.7 36.2 246 409-662 37-322 (345)
266 KOG2314 Translation initiation 99.3 1.9E-09 4.1E-14 114.4 28.9 112 543-663 212-335 (698)
267 TIGR02658 TTQ_MADH_Hv methylam 99.3 5.1E-09 1.1E-13 112.1 32.7 240 849-1106 53-335 (352)
268 TIGR02800 propeller_TolB tol-p 99.3 1.1E-09 2.3E-14 126.8 29.2 210 404-627 185-405 (417)
269 TIGR02800 propeller_TolB tol-p 99.3 6.2E-10 1.3E-14 128.7 25.4 225 328-585 171-406 (417)
270 KOG4547 WD40 repeat-containing 99.3 9.9E-10 2.1E-14 118.4 24.3 194 417-619 2-221 (541)
271 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.5E-08 3.2E-13 108.6 31.6 275 328-627 28-339 (352)
272 KOG4547 WD40 repeat-containing 99.2 3.3E-09 7.1E-14 114.5 23.2 190 360-575 6-220 (541)
273 KOG0280 Uncharacterized conser 99.2 2.5E-09 5.4E-14 104.8 20.1 253 345-619 68-334 (339)
274 TIGR03300 assembly_YfgL outer 99.2 3.5E-08 7.6E-13 112.0 31.9 183 469-664 67-261 (377)
275 TIGR03300 assembly_YfgL outer 99.2 1.8E-08 3.9E-13 114.4 29.3 306 512-952 66-376 (377)
276 KOG1409 Uncharacterized conser 99.1 1.5E-09 3.2E-14 108.6 16.7 212 448-674 19-239 (404)
277 KOG2659 LisH motif-containing 99.1 1.1E-09 2.3E-14 105.6 13.8 169 3-182 24-204 (228)
278 PLN02919 haloacid dehalogenase 99.1 8.1E-08 1.7E-12 120.4 32.9 258 844-1105 570-892 (1057)
279 KOG0309 Conserved WD40 repeat- 99.1 8.5E-10 1.8E-14 120.6 12.8 285 311-619 23-340 (1081)
280 KOG4190 Uncharacterized conser 99.1 1.2E-09 2.7E-14 115.1 13.1 244 403-660 730-986 (1034)
281 PLN02919 haloacid dehalogenase 99.0 2.9E-07 6.4E-12 115.4 34.5 74 885-959 806-892 (1057)
282 KOG0280 Uncharacterized conser 99.0 3.5E-08 7.6E-13 97.0 20.1 247 407-664 68-335 (339)
283 PRK04043 tolB translocation pr 99.0 1.5E-07 3.2E-12 106.1 27.2 217 326-576 168-401 (419)
284 KOG1064 RAVE (regulator of V-A 99.0 2.4E-09 5.2E-14 128.4 12.8 198 345-587 2207-2410(2439)
285 KOG1064 RAVE (regulator of V-A 99.0 2.6E-09 5.6E-14 128.1 12.4 200 405-628 2205-2408(2439)
286 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.7E-14 115.1 8.4 219 875-1114 728-961 (1034)
287 KOG0309 Conserved WD40 repeat- 98.9 2E-08 4.3E-13 110.2 16.1 304 333-664 11-341 (1081)
288 PRK04043 tolB translocation pr 98.9 1.2E-06 2.7E-11 98.8 27.9 197 455-663 189-401 (419)
289 PF15492 Nbas_N: Neuroblastoma 98.8 1.1E-06 2.5E-11 87.2 23.6 237 847-1110 3-270 (282)
290 PF07433 DUF1513: Protein of u 98.8 3.1E-06 6.7E-11 87.3 27.6 209 845-1059 8-258 (305)
291 KOG3617 WD40 and TPR repeat-co 98.8 9.3E-07 2E-11 98.8 24.4 222 412-659 19-256 (1416)
292 COG5170 CDC55 Serine/threonine 98.8 1.5E-07 3.3E-12 92.9 16.2 256 345-617 25-366 (460)
293 PRK11138 outer membrane biogen 98.8 3.2E-06 7E-11 96.2 29.9 188 469-665 71-277 (394)
294 KOG3914 WD repeat protein WDR4 98.8 3.8E-08 8.2E-13 101.4 12.1 168 348-538 64-232 (390)
295 PRK11138 outer membrane biogen 98.8 3.6E-06 7.9E-11 95.8 29.1 143 512-665 70-226 (394)
296 KOG3617 WD40 and TPR repeat-co 98.8 9.1E-07 2E-11 98.9 22.1 111 348-485 17-131 (1416)
297 KOG4532 WD40-like repeat conta 98.7 1.2E-06 2.7E-11 85.1 19.4 235 644-958 84-334 (344)
298 PF15492 Nbas_N: Neuroblastoma 98.7 1.3E-05 2.7E-10 80.0 26.9 240 413-673 2-269 (282)
299 COG5170 CDC55 Serine/threonine 98.7 2.7E-07 5.9E-12 91.1 14.9 247 407-662 25-367 (460)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 9.5E-09 2.1E-13 114.7 5.2 215 404-648 1097-1317(1516)
301 KOG4532 WD40-like repeat conta 98.7 1.9E-06 4.1E-11 83.8 19.9 176 362-560 131-321 (344)
302 KOG4714 Nucleoporin [Nuclear s 98.7 2.6E-07 5.6E-12 89.3 13.4 209 349-576 39-255 (319)
303 PF13360 PQQ_2: PQQ-like domai 98.7 4.8E-06 1E-10 87.9 25.0 224 861-1108 2-237 (238)
304 PF08450 SGL: SMP-30/Gluconola 98.7 1.4E-05 3.1E-10 84.4 28.4 217 845-1088 3-243 (246)
305 KOG0882 Cyclophilin-related pe 98.7 9.7E-07 2.1E-11 92.0 17.9 214 451-673 7-241 (558)
306 PF07433 DUF1513: Protein of u 98.7 2.2E-05 4.8E-10 81.1 27.0 234 348-612 6-279 (305)
307 PRK02888 nitrous-oxide reducta 98.7 8.9E-06 1.9E-10 91.8 26.0 102 841-944 320-450 (635)
308 PRK02888 nitrous-oxide reducta 98.6 9.3E-06 2E-10 91.6 25.4 155 848-1011 283-481 (635)
309 PF08450 SGL: SMP-30/Gluconola 98.6 4.3E-05 9.4E-10 80.7 29.6 219 413-651 4-244 (246)
310 KOG4714 Nucleoporin [Nuclear s 98.6 3.8E-06 8.3E-11 81.5 17.6 95 862-956 159-255 (319)
311 KOG1645 RING-finger-containing 98.6 1.3E-05 2.9E-10 82.8 22.5 249 403-662 188-461 (463)
312 PF13360 PQQ_2: PQQ-like domai 98.6 1.1E-05 2.3E-10 85.2 22.9 219 429-666 2-234 (238)
313 KOG1920 IkappaB kinase complex 98.6 1.2E-05 2.6E-10 94.7 24.4 273 773-1100 69-364 (1265)
314 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00012 2.6E-09 71.4 26.6 144 353-524 17-160 (354)
315 KOG1897 Damage-specific DNA bi 98.5 0.0055 1.2E-07 71.6 53.6 224 855-1102 686-943 (1096)
316 KOG3914 WD repeat protein WDR4 98.5 1.3E-06 2.8E-11 90.4 13.7 166 411-585 65-233 (390)
317 KOG1897 Damage-specific DNA bi 98.5 0.0058 1.3E-07 71.4 53.3 585 345-1049 305-943 (1096)
318 KOG2695 WD40 repeat protein [G 98.5 4.3E-07 9.3E-12 91.4 8.6 165 352-540 217-387 (425)
319 PF00930 DPPIV_N: Dipeptidyl p 98.5 5.1E-05 1.1E-09 84.7 25.7 266 355-652 1-347 (353)
320 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.0015 3.3E-08 63.9 31.3 139 512-660 24-163 (354)
321 PF00400 WD40: WD domain, G-be 98.4 6.7E-07 1.5E-11 62.8 6.1 39 915-953 1-39 (39)
322 KOG0882 Cyclophilin-related pe 98.4 2E-06 4.4E-11 89.7 11.9 214 881-1106 8-236 (558)
323 PF06433 Me-amine-dh_H: Methyl 98.4 0.0004 8.7E-09 72.8 28.3 205 846-1058 99-330 (342)
324 PF06433 Me-amine-dh_H: Methyl 98.4 7E-05 1.5E-09 78.3 22.7 285 567-923 17-330 (342)
325 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.6E-11 88.2 9.1 163 458-629 216-387 (425)
326 KOG1275 PAB-dependent poly(A) 98.4 5.4E-06 1.2E-10 94.2 15.0 180 852-1046 146-340 (1118)
327 KOG1920 IkappaB kinase complex 98.4 0.0001 2.2E-09 87.4 25.4 278 346-661 68-364 (1265)
328 KOG0396 Uncharacterized conser 98.4 3.3E-06 7.1E-11 86.5 11.7 120 6-126 116-243 (389)
329 KOG2114 Vacuolar assembly/sort 98.3 3.4E-05 7.3E-10 87.7 19.1 204 889-1108 30-250 (933)
330 PF00400 WD40: WD domain, G-be 98.3 2.4E-06 5.1E-11 59.9 6.7 39 872-911 1-39 (39)
331 KOG2114 Vacuolar assembly/sort 98.3 6.8E-05 1.5E-09 85.4 21.0 203 847-1057 29-252 (933)
332 PF14583 Pectate_lyase22: Olig 98.2 0.002 4.2E-08 69.2 29.8 280 352-661 41-380 (386)
333 PF10607 CLTH: CTLH/CRA C-term 98.2 5.5E-06 1.2E-10 78.9 9.1 133 38-181 5-140 (145)
334 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00047 1E-08 77.0 25.9 206 777-993 104-345 (353)
335 KOG3621 WD40 repeat-containing 98.2 0.0005 1.1E-08 77.0 24.1 287 345-669 32-360 (726)
336 KOG1645 RING-finger-containing 98.1 8E-05 1.7E-09 77.2 16.0 235 864-1109 175-427 (463)
337 PF04053 Coatomer_WDAD: Coatom 98.1 0.00038 8.2E-09 78.3 22.7 222 841-1104 32-265 (443)
338 KOG1275 PAB-dependent poly(A) 98.1 5E-05 1.1E-09 86.7 15.3 180 362-575 150-342 (1118)
339 PF08513 LisH: LisH; InterPro 98.1 4.9E-06 1.1E-10 51.4 3.7 27 6-32 1-27 (27)
340 KOG2066 Vacuolar assembly/sort 98.1 0.00033 7.1E-09 79.5 20.6 147 850-1004 80-233 (846)
341 KOG3621 WD40 repeat-containing 98.1 0.00071 1.5E-08 75.8 22.4 151 777-956 37-198 (726)
342 cd00216 PQQ_DH Dehydrogenases 98.0 0.0044 9.4E-08 72.4 29.7 108 554-668 62-189 (488)
343 PF02897 Peptidase_S9_N: Proly 98.0 0.0064 1.4E-07 70.0 31.0 251 348-623 125-409 (414)
344 COG0823 TolB Periplasmic compo 98.0 0.0012 2.5E-08 74.3 23.6 196 449-653 188-390 (425)
345 cd00216 PQQ_DH Dehydrogenases 98.0 0.0059 1.3E-07 71.3 30.5 110 512-628 62-193 (488)
346 PF11768 DUF3312: Protein of u 98.0 0.00031 6.7E-09 77.7 18.1 131 335-488 194-332 (545)
347 PF14583 Pectate_lyase22: Olig 98.0 0.0046 1E-07 66.4 26.2 289 777-1100 39-380 (386)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.025 5.4E-07 66.2 34.9 111 512-628 70-199 (527)
349 PF11768 DUF3312: Protein of u 98.0 0.0005 1.1E-08 76.0 19.2 115 841-958 205-332 (545)
350 KOG2066 Vacuolar assembly/sort 97.9 0.0002 4.4E-09 81.1 15.5 189 882-1102 39-234 (846)
351 COG0823 TolB Periplasmic compo 97.9 0.00078 1.7E-08 75.6 19.7 203 329-560 175-388 (425)
352 PF04053 Coatomer_WDAD: Coatom 97.9 0.002 4.4E-08 72.6 22.7 222 406-664 30-264 (443)
353 PF08596 Lgl_C: Lethal giant l 97.9 0.0049 1.1E-07 68.5 25.5 253 348-607 3-325 (395)
354 PF08596 Lgl_C: Lethal giant l 97.9 0.008 1.7E-07 66.9 26.7 242 410-661 3-334 (395)
355 smart00667 LisH Lissencephaly 97.8 2.2E-05 4.8E-10 52.9 4.1 32 4-35 2-33 (34)
356 PF06977 SdiA-regulated: SdiA- 97.8 0.0097 2.1E-07 61.2 24.4 191 346-559 21-239 (248)
357 PF06977 SdiA-regulated: SdiA- 97.8 0.0053 1.1E-07 63.1 22.1 202 841-1045 21-247 (248)
358 PF04841 Vps16_N: Vps16, N-ter 97.8 0.015 3.2E-07 65.9 27.4 200 847-1059 34-257 (410)
359 smart00668 CTLH C-terminal to 97.7 3.2E-05 7E-10 59.9 3.9 52 38-90 5-56 (58)
360 COG3391 Uncharacterized conser 97.7 0.076 1.7E-06 59.8 31.1 278 337-642 21-308 (381)
361 COG3391 Uncharacterized conser 97.6 0.019 4.2E-07 64.5 25.4 208 843-1059 75-294 (381)
362 PF00780 CNH: CNH domain; Int 97.6 0.027 5.9E-07 60.6 25.8 236 783-1059 5-266 (275)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.25 5.4E-06 58.0 34.6 192 469-665 71-336 (527)
364 COG3386 Gluconolactonase [Carb 97.6 0.016 3.5E-07 61.9 22.6 217 848-1088 31-272 (307)
365 KOG1008 Uncharacterized conser 97.6 2.9E-05 6.3E-10 85.2 1.8 202 348-575 58-275 (783)
366 PRK13616 lipoprotein LpqB; Pro 97.5 0.0043 9.4E-08 72.9 19.4 188 842-1043 350-563 (591)
367 KOG1008 Uncharacterized conser 97.5 7.3E-05 1.6E-09 82.1 3.3 159 498-661 57-224 (783)
368 COG3490 Uncharacterized protei 97.5 0.057 1.2E-06 54.3 22.7 234 846-1099 72-346 (366)
369 PF02897 Peptidase_S9_N: Proly 97.5 0.13 2.8E-06 59.2 30.3 244 409-664 124-406 (414)
370 KOG2817 Predicted E3 ubiquitin 97.4 0.0015 3.3E-08 68.6 11.7 111 6-117 117-239 (394)
371 PF00780 CNH: CNH domain; Int 97.4 0.1 2.2E-06 56.1 26.4 229 357-629 6-266 (275)
372 PF03178 CPSF_A: CPSF A subuni 97.4 0.036 7.8E-07 61.1 23.2 177 370-575 3-202 (321)
373 PF03178 CPSF_A: CPSF A subuni 97.3 0.029 6.4E-07 61.8 21.8 175 862-1049 2-203 (321)
374 COG3490 Uncharacterized protei 97.3 0.074 1.6E-06 53.5 21.5 108 545-658 71-185 (366)
375 PF08553 VID27: VID27 cytoplas 97.3 0.032 6.8E-07 66.6 22.6 149 894-1048 492-647 (794)
376 PRK13616 lipoprotein LpqB; Pro 97.2 0.051 1.1E-06 64.0 22.7 162 882-1048 349-525 (591)
377 TIGR03074 PQQ_membr_DH membran 97.2 1 2.2E-05 54.8 40.3 198 469-666 196-481 (764)
378 PF05096 Glu_cyclase_2: Glutam 97.1 0.2 4.4E-06 51.2 23.3 204 841-1096 44-256 (264)
379 PF04841 Vps16_N: Vps16, N-ter 97.1 0.31 6.7E-06 55.3 27.8 176 409-599 81-270 (410)
380 COG3386 Gluconolactonase [Carb 97.1 0.11 2.5E-06 55.6 22.5 224 351-607 29-274 (307)
381 cd08044 TAF5_NTD2 TAF5_NTD2 is 97.1 0.0013 2.8E-08 60.8 6.7 82 67-149 25-113 (133)
382 KOG4640 Anaphase-promoting com 97.1 0.0024 5.1E-08 70.9 9.4 93 883-984 21-114 (665)
383 PF14870 PSII_BNR: Photosynthe 97.1 0.19 4.1E-06 53.5 23.2 160 879-1045 141-301 (302)
384 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.24 5.1E-06 55.1 24.2 84 542-629 308-409 (415)
385 PRK10115 protease 2; Provision 97.0 1.2 2.6E-05 54.3 32.5 244 409-664 127-396 (686)
386 smart00320 WD40 WD40 repeats. 96.9 0.0027 5.9E-08 43.6 5.6 39 915-953 2-40 (40)
387 PRK10115 protease 2; Provision 96.9 2 4.2E-05 52.5 33.8 243 348-621 128-397 (686)
388 KOG4640 Anaphase-promoting com 96.8 0.0058 1.3E-07 67.9 9.4 92 841-934 20-114 (665)
389 PF10647 Gmad1: Lipoprotein Lp 96.7 0.26 5.7E-06 51.7 21.0 159 842-1007 24-200 (253)
390 PF04494 TFIID_90kDa: WD40 ass 96.7 0.0025 5.4E-08 59.6 5.2 82 67-149 36-124 (142)
391 PF05694 SBP56: 56kDa selenium 96.7 0.46 9.9E-06 51.9 22.4 149 511-659 87-274 (461)
392 PHA02713 hypothetical protein; 96.7 0.16 3.5E-06 60.2 21.5 226 863-1115 273-545 (557)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.19 4.2E-06 55.8 20.1 82 841-922 307-407 (415)
394 smart00320 WD40 WD40 repeats. 96.6 0.0058 1.3E-07 41.9 5.5 39 872-911 2-40 (40)
395 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.9 4.1E-05 48.3 31.9 286 785-1110 37-369 (418)
396 KOG2395 Protein involved in va 96.5 0.054 1.2E-06 59.2 14.1 142 467-617 346-499 (644)
397 PF14727 PHTB1_N: PTHB1 N-term 96.5 2 4.4E-05 48.0 32.5 281 355-665 33-363 (418)
398 PF07995 GSDH: Glucose / Sorbo 96.4 1 2.2E-05 49.6 24.3 245 843-1096 3-330 (331)
399 PF10647 Gmad1: Lipoprotein Lp 96.4 0.18 3.9E-06 52.9 17.6 151 884-1041 25-188 (253)
400 PF08553 VID27: VID27 cytoplas 96.4 0.074 1.6E-06 63.5 15.9 146 465-617 492-646 (794)
401 COG3204 Uncharacterized protei 96.4 0.76 1.6E-05 47.2 20.4 178 878-1058 81-272 (316)
402 KOG2395 Protein involved in va 96.4 0.075 1.6E-06 58.2 14.2 145 897-1048 348-500 (644)
403 PF15390 DUF4613: Domain of un 96.3 0.065 1.4E-06 59.7 13.7 157 882-1049 19-187 (671)
404 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.22 4.9E-06 43.2 14.2 84 456-549 2-88 (111)
405 PF07995 GSDH: Glucose / Sorbo 96.3 2.3 5.1E-05 46.8 27.3 113 348-477 3-135 (331)
406 KOG4499 Ca2+-binding protein R 96.3 0.58 1.2E-05 45.9 18.2 56 846-901 216-272 (310)
407 KOG4441 Proteins containing BT 96.3 0.38 8.1E-06 57.0 20.9 234 417-664 282-548 (571)
408 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.15 3.2E-06 44.3 12.4 102 349-480 2-109 (111)
409 PF05096 Glu_cyclase_2: Glutam 96.0 2 4.4E-05 44.2 21.7 196 777-1003 48-258 (264)
410 COG3204 Uncharacterized protei 96.0 1.9 4.2E-05 44.3 20.9 168 405-582 82-269 (316)
411 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.3E-07 40.7 5.6 34 346-381 11-44 (47)
412 PF05694 SBP56: 56kDa selenium 95.9 3.8 8.2E-05 45.2 24.6 257 337-607 52-392 (461)
413 KOG2444 WD40 repeat protein [G 95.8 0.025 5.4E-07 55.2 7.0 105 853-957 70-179 (238)
414 KOG2079 Vacuolar assembly/sort 95.8 0.26 5.6E-06 59.0 16.1 98 361-484 101-202 (1206)
415 TIGR03118 PEPCTERM_chp_1 conse 95.8 2.9 6.2E-05 43.5 21.3 208 885-1104 25-282 (336)
416 TIGR03074 PQQ_membr_DH membran 95.8 2.4 5.2E-05 51.8 24.9 158 469-627 262-486 (764)
417 PHA02713 hypothetical protein; 95.7 0.53 1.1E-05 56.0 19.2 188 851-1053 302-538 (557)
418 KOG2079 Vacuolar assembly/sort 95.7 0.12 2.6E-06 61.6 13.2 104 419-528 98-202 (1206)
419 KOG4441 Proteins containing BT 95.7 1.2 2.7E-05 52.7 22.0 236 850-1112 282-555 (571)
420 KOG2444 WD40 repeat protein [G 95.7 0.036 7.7E-07 54.2 7.2 68 990-1060 73-144 (238)
421 PRK13684 Ycf48-like protein; P 95.5 3.1 6.8E-05 45.8 22.7 156 882-1047 172-330 (334)
422 PF12894 Apc4_WD40: Anaphase-p 95.4 0.053 1.1E-06 39.0 5.7 32 407-438 10-41 (47)
423 KOG2377 Uncharacterized conser 95.2 1.7 3.6E-05 47.1 18.0 156 303-488 33-188 (657)
424 KOG4499 Ca2+-binding protein R 94.9 3.4 7.4E-05 40.8 17.8 94 500-599 160-264 (310)
425 TIGR03118 PEPCTERM_chp_1 conse 94.8 5.9 0.00013 41.2 21.6 210 455-671 24-287 (336)
426 COG3823 Glutamine cyclotransfe 94.7 1.8 4E-05 41.8 15.1 104 852-958 55-161 (262)
427 PF12234 Rav1p_C: RAVE protein 94.5 1.1 2.4E-05 52.4 16.1 112 455-574 31-155 (631)
428 KOG1898 Splicing factor 3b, su 94.2 18 0.00039 44.2 36.3 103 847-954 939-1047(1205)
429 PF12234 Rav1p_C: RAVE protein 94.2 1.1 2.3E-05 52.5 15.3 125 877-1003 24-155 (631)
430 PHA03098 kelch-like protein; P 94.2 2.2 4.7E-05 51.0 19.0 189 851-1052 293-515 (534)
431 KOG2280 Vacuolar assembly/sort 94.2 3.2 7E-05 48.3 18.4 182 863-1059 65-257 (829)
432 PF10168 Nup88: Nuclear pore c 94.0 13 0.00027 45.3 24.2 74 883-958 85-182 (717)
433 PHA03098 kelch-like protein; P 93.8 2.7 5.9E-05 50.2 18.8 150 512-664 344-513 (534)
434 COG4257 Vgb Streptogramin lyas 93.8 8.2 0.00018 39.4 18.2 203 884-1104 63-265 (353)
435 PLN00033 photosystem II stabil 93.7 15 0.00032 41.3 27.5 154 885-1045 241-396 (398)
436 PHA02790 Kelch-like protein; P 93.5 4.2 9.2E-05 47.5 19.0 185 851-1051 270-473 (480)
437 KOG3630 Nuclear pore complex, 93.4 0.67 1.5E-05 55.9 11.8 146 841-992 100-260 (1405)
438 COG4257 Vgb Streptogramin lyas 93.4 10 0.00022 38.7 21.9 232 841-1104 61-308 (353)
439 PF14870 PSII_BNR: Photosynthe 93.3 13 0.00029 39.8 31.1 152 841-1001 144-301 (302)
440 KOG3630 Nuclear pore complex, 93.3 0.81 1.8E-05 55.3 12.2 145 455-605 102-260 (1405)
441 TIGR02604 Piru_Ver_Nterm putat 93.0 3.2 6.8E-05 46.7 16.4 148 926-1093 14-205 (367)
442 KOG1916 Nuclear protein, conta 92.5 0.13 2.8E-06 59.9 4.3 111 848-960 190-328 (1283)
443 TIGR02604 Piru_Ver_Nterm putat 92.5 3.3 7.1E-05 46.5 15.6 151 883-1039 14-204 (367)
444 KOG3616 Selective LIM binding 92.4 13 0.00027 43.2 19.2 87 867-959 323-409 (1636)
445 PF15390 DUF4613: Domain of un 92.1 4.5 9.7E-05 45.9 15.3 147 841-1003 19-185 (671)
446 COG4590 ABC-type uncharacteriz 92.1 2.2 4.8E-05 46.1 12.4 153 841-1003 220-385 (733)
447 PF08728 CRT10: CRT10; InterP 91.8 11 0.00023 45.0 18.7 116 410-528 102-245 (717)
448 PF11725 AvrE: Pathogenicity f 91.8 18 0.00038 46.8 21.3 150 345-531 361-518 (1774)
449 smart00036 CNH Domain found in 91.6 23 0.0005 38.4 26.2 209 841-1058 42-280 (302)
450 PHA02790 Kelch-like protein; P 91.4 14 0.0003 43.3 19.6 185 894-1104 271-473 (480)
451 KOG2280 Vacuolar assembly/sort 91.4 21 0.00045 42.0 19.7 217 347-597 44-268 (829)
452 KOG1916 Nuclear protein, conta 91.3 0.15 3.3E-06 59.3 3.2 199 841-1051 132-377 (1283)
453 PF03022 MRJP: Major royal jel 91.2 18 0.00038 38.8 18.5 189 844-1036 3-253 (287)
454 COG5167 VID27 Protein involved 90.8 8.5 0.00018 42.6 15.3 151 459-618 472-632 (776)
455 KOG2377 Uncharacterized conser 90.6 7.5 0.00016 42.4 14.5 154 871-1034 5-169 (657)
456 PF10313 DUF2415: Uncharacteri 90.4 0.82 1.8E-05 31.9 4.8 33 347-379 1-35 (43)
457 PF10214 Rrn6: RNA polymerase 90.0 60 0.0013 40.5 25.8 173 841-1050 79-278 (765)
458 PRK13684 Ycf48-like protein; P 90.0 34 0.00075 37.7 31.9 152 497-660 172-329 (334)
459 KOG1900 Nuclear pore complex, 89.8 3.9 8.6E-05 50.8 13.2 154 350-531 82-274 (1311)
460 COG5290 IkappaB kinase complex 89.7 35 0.00076 40.3 19.5 59 841-899 295-353 (1243)
461 COG3292 Predicted periplasmic 89.7 31 0.00068 39.3 18.6 277 343-658 161-443 (671)
462 PF10313 DUF2415: Uncharacteri 89.5 1.1 2.4E-05 31.2 4.9 32 883-914 1-34 (43)
463 PF13449 Phytase-like: Esteras 89.3 18 0.00038 39.8 17.1 165 882-1048 19-249 (326)
464 COG5276 Uncharacterized conser 89.2 30 0.00066 35.9 27.4 166 340-536 80-248 (370)
465 PF08728 CRT10: CRT10; InterP 89.2 9.1 0.0002 45.6 15.1 174 853-1047 49-245 (717)
466 PF07676 PD40: WD40-like Beta 89.0 1.4 3.1E-05 30.2 5.5 30 345-374 7-38 (39)
467 PF10168 Nup88: Nuclear pore c 88.8 66 0.0014 39.3 25.1 75 841-915 84-181 (717)
468 KOG1900 Nuclear pore complex, 88.4 3.8 8.2E-05 51.0 11.7 144 902-1049 96-273 (1311)
469 PF12657 TFIIIC_delta: Transcr 88.3 2.6 5.7E-05 41.2 8.8 31 409-439 86-122 (173)
470 TIGR03548 mutarot_permut cycli 88.2 45 0.00097 36.7 22.1 68 512-579 125-198 (323)
471 COG5167 VID27 Protein involved 87.9 11 0.00025 41.7 13.7 152 894-1056 478-642 (776)
472 PF03022 MRJP: Major royal jel 87.8 43 0.00092 35.9 20.7 167 478-650 35-253 (287)
473 COG1520 FOG: WD40-like repeat 87.6 54 0.0012 36.9 23.3 198 422-629 70-279 (370)
474 COG3823 Glutamine cyclotransfe 87.1 32 0.0007 33.8 16.3 173 469-650 58-247 (262)
475 PF13449 Phytase-like: Esteras 87.1 31 0.00068 37.9 17.4 98 843-942 86-231 (326)
476 COG5276 Uncharacterized conser 86.3 45 0.00098 34.7 26.2 192 453-664 86-287 (370)
477 PRK13613 lipoprotein LpqB; Pro 86.3 46 0.001 39.7 18.9 194 842-1042 363-576 (599)
478 KOG2247 WD40 repeat-containing 86.2 0.12 2.5E-06 56.2 -2.0 145 777-951 38-184 (615)
479 PF07569 Hira: TUP1-like enhan 86.0 3 6.4E-05 42.5 8.0 76 933-1008 18-99 (219)
480 KOG2247 WD40 repeat-containing 85.8 0.25 5.5E-06 53.8 0.2 140 319-483 41-186 (615)
481 PF14761 HPS3_N: Hermansky-Pud 85.7 41 0.00088 33.6 15.6 149 896-1048 29-214 (215)
482 PLN02153 epithiospecifier prot 85.5 65 0.0014 35.7 22.2 23 936-958 85-112 (341)
483 KOG2063 Vacuolar assembly/sort 85.3 27 0.00058 43.0 16.5 248 780-1056 21-276 (877)
484 PRK14131 N-acetylneuraminic ac 85.2 71 0.0015 36.0 20.4 21 419-439 38-59 (376)
485 TIGR03606 non_repeat_PQQ dehyd 84.8 23 0.00049 40.4 14.8 63 924-987 28-90 (454)
486 COG4590 ABC-type uncharacteriz 84.7 3.9 8.4E-05 44.4 8.1 170 874-1052 212-390 (733)
487 COG5290 IkappaB kinase complex 84.3 45 0.00098 39.5 16.6 129 979-1119 250-384 (1243)
488 PF14781 BBS2_N: Ciliary BBSom 84.2 33 0.00071 31.3 12.9 128 776-923 1-135 (136)
489 KOG1983 Tomosyn and related SN 84.2 17 0.00036 46.3 14.9 68 977-1052 200-268 (993)
490 PF10433 MMS1_N: Mono-function 83.7 1E+02 0.0022 36.5 33.3 387 352-892 49-503 (504)
491 PF07569 Hira: TUP1-like enhan 83.5 7.1 0.00015 39.8 9.4 73 354-440 18-97 (219)
492 PF11725 AvrE: Pathogenicity f 82.5 1.8E+02 0.0039 38.4 24.3 135 900-1044 618-768 (1774)
493 PF05935 Arylsulfotrans: Aryls 82.0 1E+02 0.0022 36.1 19.3 190 468-664 116-369 (477)
494 KOG1983 Tomosyn and related SN 82.0 27 0.00059 44.4 15.5 72 540-622 197-268 (993)
495 KOG4460 Nuclear pore complex, 81.9 97 0.0021 35.0 19.9 236 854-1097 53-343 (741)
496 PF05935 Arylsulfotrans: Aryls 81.7 16 0.00036 42.5 12.8 131 981-1114 153-314 (477)
497 TIGR02276 beta_rpt_yvtn 40-res 81.0 7.6 0.00016 27.0 6.2 39 851-890 1-41 (42)
498 PLN02193 nitrile-specifier pro 80.5 1.2E+02 0.0027 35.3 22.6 237 419-660 175-460 (470)
499 PF08801 Nucleoporin_N: Nup133 80.4 16 0.00035 42.0 12.2 30 1020-1049 191-220 (422)
500 TIGR03606 non_repeat_PQQ dehyd 80.2 1.2E+02 0.0025 34.9 27.1 61 347-420 30-90 (454)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-67 Score=523.43 Aligned_cols=490 Identities=20% Similarity=0.309 Sum_probs=408.4
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHH
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 81 (1135)
+-|++||++|+|..+||.+|+.+||.|||+.++ .+.|.++++.|+|+.++..+... .++++.-.+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999988777 34445556789999999999
Q ss_pred HHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcc-cCccchhhhccCCCchhHHHHHHHHHHhhcccCcccccc
Q 001159 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL-DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK 160 (1135)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1135)
||++..|....|+.+||+.+.++ .++.+++++|+.-+.. .++..++... -......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999999 6799999999765554 4443444322 113467899999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 001159 161 LSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240 (1135)
Q Consensus 161 ~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f 240 (1135)
+|++||+.||+||+.||+++|+|||+ .+..+|+.||.|++ .++ |. .+.+++.+
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~---- 222 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQD---- 222 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhh----
Confidence 99999999999999999999999994 56689999999999 222 22 22223333
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCccccCCcchhHHHhhcccCCcceeee
Q 001159 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSF 320 (1135)
Q Consensus 241 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1135)
T Consensus 223 -------------------------------------------------------------------------------- 222 (519)
T KOG0293|consen 223 -------------------------------------------------------------------------------- 222 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchh
Q 001159 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1135)
Q Consensus 321 s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1135)
|.++|+.+.||++|+ +||+++.|.+..||++..-..+. +
T Consensus 223 ------------------------htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l----------- 261 (519)
T KOG0293|consen 223 ------------------------HTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L----------- 261 (519)
T ss_pred ------------------------CCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------
Confidence 455899999999998 79999999999999986544321 1
Q ss_pred hhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 401 ~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
...+.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 11277999999999999999999999999999999999998765332 24567899999999999 799999999999
Q ss_pred EEEcCCCeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 481 VWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.||+ +|..+..+++-. ..|.++++.++ |+++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.
T Consensus 338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~D--gk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDL-DGNILGNWEGVRDPKVHDLAITYD--GKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred EecC-CcchhhcccccccceeEEEEEcCC--CcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEE
Confidence 9995 556666666644 56899998764 5899999999999999988765553 33456689999999999999887
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCc-eeEEEec-CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRS-LGVVQFD-TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~i~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
-. +..+++||++....++.+.||..+. +-.-||. .+..++++|++|+.|+||+..+++++.++.+|.. .|++
T Consensus 414 L~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNc 487 (519)
T KOG0293|consen 414 LQ----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNC 487 (519)
T ss_pred cc----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeE
Confidence 64 7789999999999999999998743 2223444 3558899999999999999999999999998865 7999
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001159 638 LRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 638 ~~~~~-~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++|+| +..++|++++||+|+||....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999 678999999999999998753
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-61 Score=466.04 Aligned_cols=489 Identities=19% Similarity=0.295 Sum_probs=408.8
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~ 80 (1135)
+.||||||.|||+|+.++++.++||+|.++.++ +..|.+.|.+|+||.++..+++| +++.+-+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 568999999999999999999999999999998 88999999999999999999998 66777889999999
Q ss_pred HHHHHhccCHHHHHHHHHhc--cccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccc
Q 001159 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1135)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1135)
.|||++.++...|+.+||+- +.-++..++++|-+|+.||..+.++..|.+.+ .+.++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999974 55566678999999999999999998887654 34566667777777654443
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001159 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1135)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 237 (1135)
+||+||..||+|||+||.++++.| |+.. +||.+-...+
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999987 3332 4443222111
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCccccCCcchhHHHhhcccCCcce
Q 001159 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1135)
Q Consensus 238 ~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1135)
+ .++|.+|......|+|++.+.
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~KSh-------------------------------------- 215 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQKSH-------------------------------------- 215 (508)
T ss_pred -h-------------------hHhhhchHHhhhheecccccc--------------------------------------
Confidence 1 244555666666666665554
Q ss_pred eeecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeeccccccc
Q 001159 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1135)
Q Consensus 318 v~~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1135)
+-|..|||||+ +|++|+.||.|.+|++.+|+....-.+.
T Consensus 216 -------------------------------~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQ--------- 254 (508)
T KOG0275|consen 216 -------------------------------VECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQ--------- 254 (508)
T ss_pred -------------------------------hhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhh---------
Confidence 45889999998 7999999999999999999876432221
Q ss_pred chhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 398 ~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
....+.-+...|.|+.||.|...||+|+.||.|++|.+.+|.+++..- .+|...|+|+.|+.|+. .+++++.|.
T Consensus 255 --Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~ 328 (508)
T KOG0275|consen 255 --AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQ 328 (508)
T ss_pred --hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccc
Confidence 111245688999999999999999999999999999999999887432 38999999999999999 689999999
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC--CcEEEEEEcCCC-C
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADG-T 554 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~-~ 554 (1135)
++++.-+.+|++++.|+||...|+...|.+ +|..+++++.||+|++|+..+.++..++...+ ..|.++..-|.+ .
T Consensus 329 tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 999999999999999999999999999976 45899999999999999999999988776543 477787777744 5
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeeccc--CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
.+++|. ..++|++.++. |+.+++|.... ++..-+.+.+|.|.++++.++|+.++.+.+.+|+...++..|..
T Consensus 407 h~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk- 480 (508)
T KOG0275|consen 407 HFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK- 480 (508)
T ss_pred eEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc-
Confidence 677774 36789999875 88888887543 23466678999999999999999999999999999999988755
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.|..++-+|..+.+|+-+.||.+++|.
T Consensus 481 -dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-57 Score=485.31 Aligned_cols=572 Identities=15% Similarity=0.235 Sum_probs=477.2
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCcccc-ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
++|+++|+ +|++... ..|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 6777654 36888899988762 21 1234567899999999999999999999
Q ss_pred eEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC
Q 001159 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1135)
.+++|++++++.++ .+.. |++||.-++|+|.+. .+++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
+...|++|..|+++++||+.+... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 777899999999999999996554 6788899999999999999999999986 8899999998877777776654
Q ss_pred CceeEEEecCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 589 ~~v~~i~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.+.++.+-++ +.+++++|.+|.+++||..+++.+......... .+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~-e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE-EIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch-hhhcceeccccCceEEEEccceEEEEEccc
Confidence 4667777776 679999999999999999999887766544322 366666666666677778888999999887
Q ss_pred CchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 001159 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
. ++.+.+.|....
T Consensus 313 l-~i~k~ivG~ndE------------------------------------------------------------------ 325 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDE------------------------------------------------------------------ 325 (775)
T ss_pred c-EEehhhcCCchh------------------------------------------------------------------
Confidence 7 555555554332
Q ss_pred cccccccccCCcCCccceeEeecCCcccccceEEEEEE-ecCCcceeEecccceeeeEEeccccCCCCCcccccccCeee
Q 001159 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIY-TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 822 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 822 (1135)
| ..+.| .|+.+.+++++..+.+++|++.+..
T Consensus 326 -------------------------------I-~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~---------------- 357 (775)
T KOG0319|consen 326 -------------------------------I-LDMKFLGPEESHLAVATNSPELRLYTLPTSY---------------- 357 (775)
T ss_pred -------------------------------h-eeeeecCCccceEEEEeCCCceEEEecCCCc----------------
Confidence 2 44443 4566778899999999999654321
Q ss_pred cCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc----cEEEEEeCCCCCeEEEEEecCCCcE
Q 001159 823 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNI 897 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~ 897 (1135)
.. .+.+ | ...|.++....+|-+|++|+ |.++++|.+..+ -++....+|.+.|.+++++..+..+
T Consensus 358 ------c~--ii~G--H-~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 358 ------CQ--IIPG--H-TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred ------eE--EEeC--c-hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 11 2444 8 99999999888889999999 999999988443 3456678899999999998866789
Q ss_pred EEEEeCCCcEEEEEccccee---------eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 898 IAIGMEDSSVQIYNVRVDEV---------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 898 lasg~~dg~v~iwd~~~~~~---------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
|++++.|+++++|++...+. ......|...|++++++|+.+++||||.|++.+||+++... .+..+
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vL 501 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVL 501 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-----EEEEe
Confidence 99999999999999986221 11235799999999999999999999999999999999654 56778
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
.||. .+|.++.|+|..+.+++ ++|.+|+||.+ ++.|+.++ .+|...|..+.|-.+|+.|++++.||-|++|+
T Consensus 502 sGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 502 SGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 8988 79999999999999999 68999999999 99999887 46699999999999999999999999999999
Q ss_pred CCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1047 AETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
+.++++++++..|. ..+-+++-++ ...+++||+.||.|.+|.=.+.
T Consensus 576 ikt~eC~~tlD~H~----------DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 576 IKTNECEMTLDAHN----------DRVWALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ccchhhhhhhhhcc----------ceeEEEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 99999999999774 4455666666 5579999999999999975543
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-56 Score=473.25 Aligned_cols=568 Identities=16% Similarity=0.229 Sum_probs=466.3
Q ss_pred eeecCCCCCCccccCCC------cceee-EEeec--CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCce
Q 001159 318 VSFAGVAHTPNVYSQDD------LTKTV-VRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFK 388 (1135)
Q Consensus 318 v~~s~~g~~~~~~~~d~------~~~~~-~~~~~--h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~ 388 (1135)
++++++|+.+.....+. .++.. +.... ..+.+++++.+||++ .|++++..+.+++|++.+++.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 78888898887765543 34444 33333 567899999999998 688899999999999999977653
Q ss_pred eecccccccchhhhhccC-CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCe
Q 001159 389 VWDISAASMPLQNALLND-AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467 (1135)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~ 467 (1135)
.+. |+++|.-++|+|.|.+||+|+.|+.+++||+..+.+.. .|.||.+.|.++.|.|+-.+
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 233 99999999999999999999999999999999987665 89999999999999998876
Q ss_pred EEEEEEcCCCcEEEEEcCCCe-eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEE
Q 001159 468 LCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (1135)
..|++|+.|+++++||+.+.. +++++..|.+.|++++|.+++ ..+++++.|..|.+||+...+....+... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~--~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS--LELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC--ceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 678999999999999999554 488999999999999998864 89999999999999999665555444332 24556
Q ss_pred EEEcCC-----CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 547 MAYSAD-----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 547 ~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+.+-++ +.+++++|. ++.+++||..+++.+..........+..+...+....++..+.|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 666665 668888874 88999999999988766554433345555555556677777788999999999999
Q ss_pred eEEEEeCCCCCCCcceEEEc-CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcc
Q 001159 622 MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 700 (1135)
....+-+... .|..+.|- |+.++|++++..+.+++++..+.. +. .+.+
T Consensus 315 i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~-c~-ii~G--------------------------- 363 (775)
T KOG0319|consen 315 IVKQIVGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSY-CQ-IIPG--------------------------- 363 (775)
T ss_pred EehhhcCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCc-eE-EEeC---------------------------
Confidence 9888876544 68888774 688999999999999999876652 11 2233
Q ss_pred ccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEE
Q 001159 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
|...| .++.
T Consensus 364 ----------------------------------------------------------------------H~e~v-lSL~ 372 (775)
T KOG0319|consen 364 ----------------------------------------------------------------------HTEAV-LSLD 372 (775)
T ss_pred ----------------------------------------------------------------------chhhe-eeee
Confidence 44555 7777
Q ss_pred EecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCC-CEEEEE
Q 001159 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-SYVMSA 859 (1135)
Q Consensus 781 ~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg-~~la~~ 859 (1135)
...+|.+|++++.|.++++|.++.+. +..... ..+.+| .+.|.+++++..+ .+++++
T Consensus 373 ~~~~g~llat~sKD~svilWr~~~~~-------------------~~~~~~--a~~~gH-~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 373 VWSSGDLLATGSKDKSVILWRLNNNC-------------------SKSLCV--AQANGH-TNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred ecccCcEEEEecCCceEEEEEecCCc-------------------chhhhh--hhhccc-ccccceeeecccCccEEEEe
Confidence 77788889999999999999873211 111111 122348 9999999998755 478888
Q ss_pred e-CCeEEEEECCCccE-----E----EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeE
Q 001159 860 S-GGKVSLFNMMTFKV-----M----TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 929 (1135)
Q Consensus 860 ~-dg~i~vwd~~~~~~-----~----~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 929 (1135)
+ |.++++|++...+. . .+...|...|+|++++| +.+++|||+.|++.+||+++..+...+|.||...|+
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw 509 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVW 509 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceE
Confidence 8 99999999976221 1 12346999999999999 889999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCce
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLEC 1007 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~ 1007 (1135)
++.|+|.++.|+|+|.|++|+||.+++.. +++.+.||. ..|..+.|-.+|+.|++ ++||-+++|++ +..|
T Consensus 510 ~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~---~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 510 CVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT---SAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc---ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 99999999999999999999999999988 677889998 78999999999999999 68999999999 8888
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
...+ +.|...|++++.++++.+++||+.||.|.+|.=.|.+
T Consensus 582 ~~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 582 EMTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred hhhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 8775 6679999999999999999999999999999876643
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-50 Score=412.87 Aligned_cols=570 Identities=14% Similarity=0.193 Sum_probs=439.7
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 431 (1135)
+.-.|.|+.++.+.+ ..|.+-++++..... ++.+|...++-..|||.|-|+|+|...|+
T Consensus 24 ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~ 82 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGK 82 (603)
T ss_pred eccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCc
Confidence 445677877887654 478888888765432 37789999999999999999999999999
Q ss_pred EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC
Q 001159 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1135)
|+|||....+.+ ...+++...++|.+++|+.|+++ |+..+ .++..+++-..+|..+-.+.||...|+++.|-|..
T Consensus 83 vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 83 VRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence 999998774433 22366778899999999999995 44443 44444444445888889999999999999999887
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee---cc
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GF 586 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~ 586 (1135)
. -.+++|+.|++|.+|+=...+-...+..|..-|.|+.|+|||.++++++. |+.+.+||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 6 68999999999999975555555567778889999999999999999986 8899999999999999998 67
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+-+|+|.+++...+
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~- 310 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP- 310 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-
Confidence 76 8999999999999999999999999999999999999765431 122344554 568999999999999998887
Q ss_pred hhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccc
Q 001159 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1135)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1135)
...+.+.+
T Consensus 311 ~~~~~i~G------------------------------------------------------------------------ 318 (603)
T KOG0318|consen 311 SVLKVISG------------------------------------------------------------------------ 318 (603)
T ss_pred Chhheecc------------------------------------------------------------------------
Confidence 35555555
Q ss_pred cccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCC
Q 001159 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 825 (1135)
Q Consensus 746 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1135)
|...| +++..++|+++|++++.||.|.-|+...+
T Consensus 319 -------------------------HnK~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g-------------------- 352 (603)
T KOG0318|consen 319 -------------------------HNKSI-TALTVSPDGKTIYSGSYDGHINSWDSGSG-------------------- 352 (603)
T ss_pred -------------------------cccce-eEEEEcCCCCEEEeeccCceEEEEecCCc--------------------
Confidence 44556 99999999999999999999999975432
Q ss_pred CCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEE--EeCCCCCeEEEEEecCCCcEEEEEeC
Q 001159 826 SGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGME 903 (1135)
Q Consensus 826 ~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~lasg~~ 903 (1135)
..- .+.+..| ...|.+++-+..+.++.+|-|.++++.++.....-.. ++-.. .-.+++..+ ++.+++.++.
T Consensus 353 --~~~--~~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~~~ 425 (603)
T KOG0318|consen 353 --TSD--RLAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVACI 425 (603)
T ss_pred --ccc--ccccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEEec
Confidence 211 1333348 9999999999888888888899999999865433222 22122 233888888 6666666665
Q ss_pred CCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEE
Q 001159 904 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 904 dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
++.+.+=|.. .+.... -.-...++|++|++..++.|+.|+.|.||.+...+......... |. ++++++++
T Consensus 426 ~~iv~l~~~~---~~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vay 495 (603)
T KOG0318|consen 426 SDIVLLQDQT---KVSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAY 495 (603)
T ss_pred CcEEEEecCC---cceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEEEE
Confidence 5544443332 222222 33457899999999999999999999999999876433222222 22 68999999
Q ss_pred CCCCcEEEEE-ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceec
Q 001159 984 HNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1062 (1135)
Q Consensus 984 s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~ 1062 (1135)
|||+.|||++ ..+.|.+||+..+.... ..-.-|.+.|.+++|||+.+++|+|+.|.+|.||+++.....-.+.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik----- 569 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK----- 569 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----
Confidence 9999999997 57899999994444322 2223368999999999999999999999999999999765443332
Q ss_pred cccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1063 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.+|...+ ..+.|- |+..|++.+.|..|++|++.
T Consensus 570 --nAH~~gV--n~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 570 --NAHLGGV--NSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred --cccccCc--eeEEEe--cCceEEeccCcceeEEeccc
Confidence 2233334 456665 56899999999999999874
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-50 Score=415.96 Aligned_cols=552 Identities=16% Similarity=0.203 Sum_probs=431.5
Q ss_pred CCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 323 VAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 323 ~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+|+.+.+...+.... .....+|...++-..|||.|- ++|+|...|.|+|||....+.+...+
T Consensus 37 nGksv~ir~i~~~~~-~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne---------------- 98 (603)
T KOG0318|consen 37 NGKSVIIRNIDNPAS-VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE---------------- 98 (603)
T ss_pred CCCEEEEEECCCccc-eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee----------------
Confidence 344444444444333 333345899999999999996 89999999999999988755443322
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..-.++|..++|++|+++|++.+.- |.+.+||. |..+. ++.||...|.+++|-|.... .++||++|++
T Consensus 99 -f~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~ 171 (603)
T KOG0318|consen 99 -FQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNT 171 (603)
T ss_pred -eeecccccccceeCCCCcEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCCe
Confidence 33456889999999999999887652 34666664 44444 78899999999999987765 8999999999
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec---CCCCcEEEEEEcCCCCE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~ 555 (1135)
|.+|+=.-.+-..+++.|..-|.++.|+|+ |.++++++.||+|.+||=.+++.+..+. +|.+.|.+++|+||+..
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 999997666777788899999999999986 4899999999999999999999888887 88999999999999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccC--CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+++++. |.++++||+.+.++++++..... ...-.+-|. +..|++.+.+|+|.+++......+..+.+|..
T Consensus 250 ~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-- 321 (603)
T KOG0318|consen 250 FLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK-- 321 (603)
T ss_pred EEEecC----CceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--
Confidence 999986 88899999999999999875443 122234454 57899999999999999999999999998855
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 713 (1135)
.|+++..++++++|.+|+.||.|.-|+..++......-++|...+..
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~--------------------------------- 368 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG--------------------------------- 368 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE---------------------------------
Confidence 89999999999999999999999999998884332222445444331
Q ss_pred CCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc
Q 001159 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~ 793 (1135)
......+.++.++.|+++++.++......... .+.+ ..+. .+++..+++..+++.+.
T Consensus 369 ----------------~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~-~~~l-----g~QP-~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 369 ----------------MAASESGELFTIGWDDTLRVISLKDNGYTKSE-VVKL-----GSQP-KGLAVLSDGGTAVVACI 425 (603)
T ss_pred ----------------EeecCCCcEEEEecCCeEEEEecccCcccccc-eeec-----CCCc-eeEEEcCCCCEEEEEec
Confidence 12223467888899999999887543222211 0111 1222 78888888876666655
Q ss_pred cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc
Q 001159 794 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF 872 (1135)
Q Consensus 794 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~ 872 (1135)
++.+.+=+.. + +.. .. - .....++|++|+++.+|+|+ |+.|+||.+...
T Consensus 426 ~~iv~l~~~~-----------------------~-~~~--~~---~-~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 426 SDIVLLQDQT-----------------------K-VSS--IP---I-GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred CcEEEEecCC-----------------------c-cee--ec---c-ccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 5444332111 1 111 11 1 56678999999999999999 999999999876
Q ss_pred cEE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE-ecCcCCCeEEEEEcCCCCeEEEEcCCCcE
Q 001159 873 KVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQL 949 (1135)
Q Consensus 873 ~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i 949 (1135)
.+. ..+..|.++|++++||| |+.+||+|...+.|.+||+.+.+.... +.-|..+|.+|+|+|+.+++|||+-|.+|
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred cccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 543 34566999999999999 999999999999999999998876433 44599999999999999999999999999
Q ss_pred EEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 950 CMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 950 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.||+++.... .+.....|. ..|+.+.|-.+...+-++.|..|++|.+
T Consensus 555 iiysv~kP~~----~i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 555 IIYSVKKPAK----HIIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEccChhh----heEeccccc---cCceeEEEecCceEEeccCcceeEEecc
Confidence 9999997653 244455565 5699999998888777799999999986
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-49 Score=425.53 Aligned_cols=568 Identities=16% Similarity=0.240 Sum_probs=439.2
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+.+...|++++.||+|. +|++....|...+-++.....++... -+.+|.|+.|||||++
T Consensus 52 ~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~~ 110 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGKF 110 (893)
T ss_pred eecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCcE
Confidence 34788999999999997 66667888888888887766655321 3567999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCc-----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee--eeeecC
Q 001159 423 LGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK--QYTFEG 495 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~ 495 (1135)
+|+|.. +.+.||....... .....++.+|-..|+++.|+.|.+ +|++|+.|.++++|+++..+- .+.+.+
T Consensus 111 fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 111 FAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred EEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccC
Confidence 999865 5699999875432 223346678999999999999999 999999999999999987665 567889
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-----------------------CCc-----------eeEecCCC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----------------------LGS-----------RVDYDAPG 541 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-----------------------~~~-----------~~~~~~~~ 541 (1135)
|.+.|.+.-|..+. ..+++.+.||.+.+|.... ++. ..-+....
T Consensus 188 Hkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 188 HKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred CCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 99999998886654 7899999999999997661 111 00112233
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC-CCeEEEEECCCC
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDNM 620 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~ 620 (1135)
..+++.+|++..+.|+++-. .|.+.++.+....+++.+.-... .|..++|+..|.+++.|+. -|.+-+|+..+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 67899999999999998875 77899999999999999987766 8999999999999999774 489999999887
Q ss_pred ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcc
Q 001159 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 700 (1135)
.-+...++| ...+++++++|||+++|+|++||.|+|||...+ -++.+|..
T Consensus 341 sYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFte--------------------------- 390 (893)
T KOG0291|consen 341 SYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTE--------------------------- 390 (893)
T ss_pred ceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEecc---------------------------
Confidence 666665555 558999999999999999999999999999888 44444433
Q ss_pred ccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEE
Q 001159 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLI 780 (1135)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 780 (1135)
|+..| +.+.
T Consensus 391 ----------------------------------------------------------------------Hts~V-t~v~ 399 (893)
T KOG0291|consen 391 ----------------------------------------------------------------------HTSGV-TAVQ 399 (893)
T ss_pred ----------------------------------------------------------------------CCCce-EEEE
Confidence 55556 9999
Q ss_pred EecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe
Q 001159 781 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 860 (1135)
Q Consensus 781 ~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~ 860 (1135)
|+..|+.+++.+-||+++.||+... ...+... . +.+....|++..|.|..+..|+
T Consensus 400 f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft-~--P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 400 FTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFT-S--PEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeec-C--CCceeeeEEEEcCCCCEEEeec
Confidence 9999999999999999999987531 1111111 1 1156678999999999999998
Q ss_pred -C-CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEcCCC
Q 001159 861 -G-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTL 937 (1135)
Q Consensus 861 -d-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~ 937 (1135)
| -.|.||++++|+++-.+.||.++|.+++|+| .+..||+|++|.+|++||+-.. ..+.++. +...+.+++|+|||
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDG 532 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCC
Confidence 5 5699999999999999999999999999999 8999999999999999998755 3345555 66779999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCC
Q 001159 938 NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL 1017 (1135)
Q Consensus 938 ~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h 1017 (1135)
+.|+++..||.|.+||++.+... ....|.. =..++... ...+ .......
T Consensus 533 ~elaVaTldgqItf~d~~~~~q~-----~~Idgrk-----------------D~~~gR~~-------~D~~--ta~~sa~ 581 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQV-----GSIDGRK-----------------DLSGGRKE-------TDRI--TAENSAK 581 (893)
T ss_pred CeEEEEEecceEEEEEhhhceee-----ccccchh-----------------hccccccc-------ccee--ehhhccc
Confidence 99999999999999999876532 1122211 00000000 0000 0011122
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceec-----------------------------------
Q 001159 1018 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI----------------------------------- 1062 (1135)
Q Consensus 1018 ~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~----------------------------------- 1062 (1135)
....+++++|+||.++++|+..+.|++|++.++-++..++.....
T Consensus 582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~ 661 (893)
T KOG0291|consen 582 GKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRID 661 (893)
T ss_pred CCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccccc
Confidence 568899999999999999999999999999999888776532211
Q ss_pred ---cc--------cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1063 ---PT--------YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1063 ---~~--------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
|. .-.-..+.+..+.|+| .|+-++.++..| |.||.+.+
T Consensus 662 ~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 662 IALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 00 0000135677999999 567788777766 45666644
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-49 Score=421.64 Aligned_cols=587 Identities=13% Similarity=0.212 Sum_probs=448.2
Q ss_pred cCCcceeeecCCCCCCccccCCC-------cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccccc
Q 001159 312 TGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384 (1135)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~~d~-------~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~ 384 (1135)
...+.+++.||+|..+....-.+ .....++.+.-+.+|.|++|||||+ ++|+|. .+.+.||.......-.-
T Consensus 55 ~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~ 132 (893)
T KOG0291|consen 55 RYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEF 132 (893)
T ss_pred CCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhccc
Confidence 34788999999998776654443 2445566677789999999999998 566654 56899999765332111
Q ss_pred CCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC
Q 001159 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP 464 (1135)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d 464 (1135)
.+|. ....+.+|...|.++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|...|.++-|..+
T Consensus 133 ~pFv-----------l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~ 200 (893)
T KOG0291|consen 133 NPFV-----------LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGAN 200 (893)
T ss_pred Ccce-----------EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccC
Confidence 1121 223377899999999999999999999999999999999877643 3478899999999999999
Q ss_pred CCeEEEEEEcCCCcEEEEEcCC-----------------------Cee-----------eeeecCCCCCeeEEEeeccCC
Q 001159 465 NKQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----------QYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 465 ~~~~~l~s~~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~i~~~~~~~ 510 (1135)
.. -++|.+.||.+.+|.... ++. .+-+......|++.+||+..
T Consensus 201 ~~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t- 277 (893)
T KOG0291|consen 201 SL--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT- 277 (893)
T ss_pred cc--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-
Confidence 88 799999999999998651 111 01122234789999999876
Q ss_pred ccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc
Q 001159 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
+.|++|-..|...+|.+.....+..+......|..++|+..|.+|+.++. +-|++.+|+.++...+....+|.. .
T Consensus 278 -~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~ 352 (893)
T KOG0291|consen 278 -NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-R 352 (893)
T ss_pred -eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-c
Confidence 79999999999999999999999999988999999999999999999874 478999999999999999999988 8
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhh
Q 001159 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 670 (1135)
+.+++++|||+++++|++||+|+|||..++-++.++..|.. .|+.+.|+..|+.+++.+-||+|+.||+... ..+++
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRT 429 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRT 429 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeee
Confidence 99999999999999999999999999999999999997755 8999999999999999999999999999877 44444
Q ss_pred ccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccccc
Q 001159 671 LEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSW 750 (1135)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw 750 (1135)
+....
T Consensus 430 ft~P~--------------------------------------------------------------------------- 434 (893)
T KOG0291|consen 430 FTSPE--------------------------------------------------------------------------- 434 (893)
T ss_pred ecCCC---------------------------------------------------------------------------
Confidence 43211
Q ss_pred ccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccc-eeeeEEeccccCCCCCcccccccCeeecCCCCcc
Q 001159 751 RIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 829 (1135)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1135)
.-+. .+++..|.|..+++|+.|. .|. +|+.++|++
T Consensus 435 ---------------------p~Qf-scvavD~sGelV~AG~~d~F~If----------------------vWS~qTGql 470 (893)
T KOG0291|consen 435 ---------------------PIQF-SCVAVDPSGELVCAGAQDSFEIF----------------------VWSVQTGQL 470 (893)
T ss_pred ---------------------ceee-eEEEEcCCCCEEEeeccceEEEE----------------------EEEeecCee
Confidence 1111 8899999999888887763 344 456667776
Q ss_pred eeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc-EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 830 MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 830 ~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
+.. +.| | +++|.+++|+|+|..||+++ |.+|++||+-+.. .+.++. +...+..++|+| +|+.||+++-||.|
T Consensus 471 lDi-LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqI 544 (893)
T KOG0291|consen 471 LDI-LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQI 544 (893)
T ss_pred eeh-hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceE
Confidence 653 555 8 99999999999999999999 9999999986543 444454 778999999999 99999999999999
Q ss_pred EEEEcccceeeEEec--------------------CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeec
Q 001159 908 QIYNVRVDEVKTKLK--------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 967 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~--------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 967 (1135)
.+||...+..+..+. ......+.+++|+||+.+++||....|.+|++.++-.++...+..
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~ 624 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISD 624 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence 999988665443221 123568999999999999999999999999999987665443322
Q ss_pred CCCCCCCCCCceEEEECCCCcEEEE-E----ecCeEEE-------EecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEE
Q 001159 968 PAGRQSPLVGETKVQFHNDQTHLLV-V----HESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYA 1035 (1135)
Q Consensus 968 ~~~~~~~~~~v~~~~~s~dg~~l~~-~----~d~~v~v-------wd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~ 1035 (1135)
...-.........=.+.+-|.+-.+ . -++.|-+ +|+..+ .+.+ .-.|.++.|||.|+-+|+
T Consensus 625 N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAa 697 (893)
T KOG0291|consen 625 NRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAA 697 (893)
T ss_pred ccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeee
Confidence 2111100011122223333333222 1 0111111 111111 0000 235789999999999999
Q ss_pred EeCCCeEEEEECCCceeeeee
Q 001159 1036 GFCDGAIGVFDAETLRFRCRI 1056 (1135)
Q Consensus 1036 ~~~dg~I~vwd~~~~~~~~~~ 1056 (1135)
++..| +.||.+++.-...-+
T Consensus 698 atTEG-l~IYsld~~~~FDPf 717 (893)
T KOG0291|consen 698 ATTEG-LLIYSLDTTILFDPF 717 (893)
T ss_pred ecccc-eEEEecCCceEEccc
Confidence 98887 678988876554433
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-49 Score=420.97 Aligned_cols=505 Identities=14% Similarity=0.274 Sum_probs=406.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
....+|+|+.-+|+.. +||+|..||.|+||+..++..+.+ +.||...|+++.|...|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456899999999996 799999999999999998765543 78999999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
|+||.|+.|.+||+-....+. .+.||+..|+.+-|..+.+ ++++.+.|+.|++||+.+..|..+...|.+.|+++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999998765443 7899999999999998666 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCce-------------eEecCCCCcEEEEEEcCCCCEEEEEecCC-------
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-------------VDYDAPGNWCTMMAYSADGTRLFSCGTSK------- 563 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~------- 563 (1135)
++++ +.+++++.|+.+++|++...... .......++...++..++++++++-+.++
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9976 68999999999999988211000 00011111222233333333333332200
Q ss_pred -------------------------------------------------------------------CCCCeEEEEECCC
Q 001159 564 -------------------------------------------------------------------EGESHLVEWNESE 576 (1135)
Q Consensus 564 -------------------------------------------------------------------~~~~~i~~wd~~~ 576 (1135)
-.++.+..|.+..
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN 353 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc
Confidence 0134455555443
Q ss_pred -CeE--------EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE
Q 001159 577 -GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 577 -~~~--------~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 647 (1135)
+.. ...+.+|.. .|++++++.+...+++|+ .+.+++|+..+.+++.++... .+.+..|-|.++++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI 427 (888)
T ss_pred CCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence 111 134556666 899999998876666664 568999999999999999754 67899999999999
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++|...|.+.+||+... .+...++.
T Consensus 428 v~G~k~Gel~vfdlaS~-~l~Eti~A------------------------------------------------------ 452 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA-SLVETIRA------------------------------------------------------ 452 (888)
T ss_pred EEeccCCceEEEEeehh-hhhhhhhc------------------------------------------------------
Confidence 99999999999999877 45544443
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccC
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~ 807 (1135)
|.+.| .+++.+||++.+++++.|.+|++|++.....
T Consensus 453 -------------------------------------------HdgaI-Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 453 -------------------------------------------HDGAI-WSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred -------------------------------------------cccce-eeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 44555 8999999999999999999999999865332
Q ss_pred CCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeE
Q 001159 808 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 886 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~ 886 (1135)
.+..+ . ++........ +.- ...|.|+.+||||++||++- |.+|+||-+++.+....+.||.=+|.
T Consensus 489 ~~gt~-~-----k~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 489 VPGTQ-K-----KVLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL 554 (888)
T ss_pred cCccc-c-----eeeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccccee
Confidence 11110 0 0011111111 111 78899999999999999998 99999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeee
Q 001159 887 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 966 (1135)
Q Consensus 887 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 966 (1135)
||.+|| |+++++||+.|.+|++|-++-|.|.+.+-+|.+.|.++.|-|+...+.|+|.|+.|+-||-+.-+ .++
T Consensus 555 smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-----~iq 628 (888)
T KOG0306|consen 555 SMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-----EIQ 628 (888)
T ss_pred EEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----hhe
Confidence 999999 99999999999999999999999999999999999999999999999999999999999998876 677
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCC
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL 1005 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~ 1005 (1135)
.+.+|. ..|.+++.+|+|.++++ ++|..|++|.-+.
T Consensus 629 ~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 629 KLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeccch---heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 788888 79999999999999999 6899999999843
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=418.07 Aligned_cols=577 Identities=15% Similarity=0.235 Sum_probs=443.1
Q ss_pred cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEE
Q 001159 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1135)
Q Consensus 356 p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iw 435 (1135)
..|+. +| ++....|.+||+.+|+.... + ........|+|+.-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~-va-~~a~E~vn~WdlRtge~~~~--l---------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VA-VSALEQVNIWDLRTGEIEKK--L---------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EE-EeccccEeEEeeecchhhhh--h---------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 35774 33 33455899999999954321 0 012344689999999999999999999999999
Q ss_pred EeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEE
Q 001159 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 436 d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1135)
+..++.... .+.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875443 7889999999999999999 89999999999999999988899999999999999887644 7999
Q ss_pred EEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC------------eEEEEe
Q 001159 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------------AIKRTY 583 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------------~~~~~~ 583 (1135)
+.+.|+.|++||+++..+..+...|...++++++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 778999998210 011112
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE--------EeCC------------------------CC
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT--------VDAD------------------------GG 631 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~------------------------~~ 631 (1135)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+.. .+.+ ..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 111111333466677788999989999999999876432110 0000 00
Q ss_pred CCCcceEEEcCCCC---EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCC
Q 001159 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 708 (1135)
...+.++.|.|.+. .|+. -.++++..+.+...... . +
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~-~-----p--------------------------------- 359 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKT-S-----P--------------------------------- 359 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCC-C-----c---------------------------------
Confidence 12345566655432 2222 44556666655331000 0 0
Q ss_pred CCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcce
Q 001159 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSL 788 (1135)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l 788 (1135)
.+.....+.. .+|...| .+++++.|...+
T Consensus 360 ------------------------------------------------~~~~~~~i~~--~GHR~dV-Rsl~vS~d~~~~ 388 (888)
T KOG0306|consen 360 ------------------------------------------------EADRTSNIEI--GGHRSDV-RSLCVSSDSILL 388 (888)
T ss_pred ------------------------------------------------cccccceeee--ccchhhe-eEEEeecCceee
Confidence 0001111222 3488899 999999999855
Q ss_pred eEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEE
Q 001159 789 LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLF 867 (1135)
Q Consensus 789 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vw 867 (1135)
+++ ..+.+++|+. .+...++... .+.+.+..|-|.++++++|. .|.+.||
T Consensus 389 ~Sg-a~~SikiWn~----------------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 389 ASG-AGESIKIWNR----------------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred eec-CCCcEEEEEc----------------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEE
Confidence 544 4567888854 3444444321 45788999999999999999 7999999
Q ss_pred ECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----ceeeEEec-------CcCCCeEEEEEcC
Q 001159 868 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSP 935 (1135)
Q Consensus 868 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-----~~~~~~l~-------~h~~~i~~l~~s~ 935 (1135)
|+.+..++.+.++|.+.|..++.+| |++.+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+||
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 9999999999999999999999999 899999999999999999651 21111121 1346799999999
Q ss_pred CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCC
Q 001159 936 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSP 1013 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~ 1013 (1135)
||++||.+=-|.+|+||-+++-+ ..-.+.||. .+|.++..|||++++++ +.|+.|+||-+ -|.|.+.+.
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f- 589 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF- 589 (888)
T ss_pred CCcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-
Confidence 99999999999999999999865 666788998 89999999999999999 58999999999 788887764
Q ss_pred CCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC
Q 001159 1014 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1014 ~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 1093 (1135)
+|...|.++.|-|+..++.+++.|+.|+-||-+..+.+..+..|. .-+.|++-+| +|.+++|++.|.
T Consensus 590 --AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~----------~ev~cLav~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 590 --AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH----------SEVWCLAVSP-NGSFVVSSSHDK 656 (888)
T ss_pred --cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch----------heeeeeEEcC-CCCeEEeccCCc
Confidence 458999999999999999999999999999999999999888774 3345777788 788999999999
Q ss_pred cEEEEecCCCcccc
Q 001159 1094 AVHVVEPSDAELKW 1107 (1135)
Q Consensus 1094 ~v~~W~~~~~~~~~ 1107 (1135)
+|++|........+
T Consensus 657 sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 657 SIRLWERTDEILIL 670 (888)
T ss_pred eeEeeeccCcceee
Confidence 99999987644333
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-51 Score=405.06 Aligned_cols=367 Identities=19% Similarity=0.302 Sum_probs=303.4
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67999999999999999999999999999999999986655 8889999999999999999 899999999999999
Q ss_pred cCCCeee-eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 484 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
..+|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998766 6789999999999998743 236667788776
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
+||.++|||+..+.++..+.+|.. .|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+.
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 388899999999999999999998 9999999865 4899999999999999999999999999987 789988876
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
|. .|-+|..|.+=+- .+.+.....
T Consensus 299 dy-~LRtgaf~~t~~~---------~~~~se~~~---------------------------------------------- 322 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRK---------PKSFSEEQK---------------------------------------------- 322 (480)
T ss_pred hh-hhhcccccccccc---------CCChHHHHH----------------------------------------------
Confidence 53 2223322211000 000000000
Q ss_pred cccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEe
Q 001159 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
..+.- ...+.-..+.++++++.|.++.+|+-
T Consensus 323 ----------------------~Al~r---------------------------Y~~~~~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 323 ----------------------KALER---------------------------YEAVLKDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred ----------------------HHHHH---------------------------HHHhhccCcceeEEecCCceEEEecc
Confidence 00000 11111223456999999999999953
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h 881 (1135)
.. .......+.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|
T Consensus 354 ~~----------------------~kkpi~rmtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 354 FK----------------------SKKPITRMTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred cc----------------------cccchhhhhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence 21 1111112333 8 99999999999999999999 999999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
-..|..++|+. |.++|++|+.|.++++|++.+.++...|.||.+.|.++.|+|||+.+++++.|+.+++|.
T Consensus 409 v~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999995
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-50 Score=395.43 Aligned_cols=296 Identities=20% Similarity=0.347 Sum_probs=265.3
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.++. |.++|.|+.|+|+|+ .||+|+.|.++++||+.+..+..+ .++|..+|.|++||||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPD 168 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPD 168 (480)
T ss_pred cccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCC
Confidence 3444 899999999999998 689999999999999999877664 7899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec-----CCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+..++++..+.
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred cchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEec
Confidence 99999999999999999999987654 6889999999999965 455 89999999999999999999999999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEc-----------CCCC---------
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT--------- 554 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~~~~--------- 554 (1135)
+|+.+|+|+.|-.. .++++||.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 245 gHT~~VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 245 GHTASVTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred cCccceEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 99999999999543 599999999999999999988899999999999999877 2233
Q ss_pred ----------------EEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 555 ----------------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 555 ----------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
.|++++. |.++.+|+... .+++....+|.. .|+.+.||||++++++++.|..|++|+.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeC
Confidence 4888874 88999999864 457888999988 8999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
++|+.+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+. ++...+
T Consensus 397 ~tGk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DL 447 (480)
T KOG0271|consen 397 RTGKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDL 447 (480)
T ss_pred CCcchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccC
Confidence 9999999999874 48999999999999999999999999999877 443333
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-42 Score=368.29 Aligned_cols=625 Identities=12% Similarity=0.165 Sum_probs=406.7
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe--C
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~--~ 428 (1135)
.++-+|... ++|-- ..-.|.+||....+.-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aYp-AGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAYP-AGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceeec-cCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 455556554 33321 12378899987655432 3566888999999999999999984 6
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC--CCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
...+++|++.....+. ++..|+..|+|++|+|.++ ++++.+. |-.|.+||.+.......- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7789999999877555 7889999999999999999 7887764 456778887755433222 245678888886
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCcee---EecCCCCcEEEEEEcCCCCEEEE-EecCCC--------CCCeEEEEEC
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS-CGTSKE--------GESHLVEWNE 574 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~-~~~~~~--------~~~~i~~wd~ 574 (1135)
. +|.++++.+ +..|++|.++..+... .+.+...-.-.+. +..++++ |+...- ..|.+.-+.
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEFS- 247 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEFS- 247 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeeec-
Confidence 5 558888766 6789999988665221 1111111111111 1112211 110000 012222221
Q ss_pred CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC----------------------CCC
Q 001159 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------GGL 632 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~ 632 (1135)
..+++..+-.-......||+.+ .++|++|+.+|.|++++..+..-+.++... ...
T Consensus 248 -sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 248 -SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred -hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 1111111111111134566666 579999999999999998876544444311 111
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh--hccccccccccCCCCCCCCCCcccccCCCccccccccCCCC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR--MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 710 (1135)
....++.|++....|.+...|..++|||+++-.+.-+ .+-.|..-+..+...+
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p------------------------- 379 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP------------------------- 379 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc-------------------------
Confidence 2335788999899999999999999999987633211 1112221111100000
Q ss_pred CCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeE
Q 001159 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLA 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~ 790 (1135)
...........|.+-++++++|++|++|++.........+. -.++.+-..++.
T Consensus 380 ------------~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR---------------Nils~~l~ki~y 432 (1080)
T KOG1408|consen 380 ------------CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR---------------NILSANLSKIPY 432 (1080)
T ss_pred ------------ccccCcccccCCccceeEecCCCcEEEeecccccccceeec---------------ccchhhhhcCcc
Confidence 00001112223334444555555555555543111111000 000000000000
Q ss_pred ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEEC
Q 001159 791 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 869 (1135)
Q Consensus 791 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~ 869 (1135)
.|++..+. .....-++|..... ..+ . +..+.++++||+|++||+|+ .|.++||++
T Consensus 433 --~d~~~q~~--------------~d~~~~~fdka~~s-----~~d--~-r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 433 --EDSTQQIM--------------HDASAGIFDKALVS-----TCD--S-RFGFRALAVSPDGQHLASGDRGGNLRVYDL 488 (1080)
T ss_pred --ccCchhhh--------------hhccCCcccccchh-----hcC--c-ccceEEEEECCCcceecccCccCceEEEEe
Confidence 00000000 00000011111111 111 2 78899999999999999998 799999999
Q ss_pred CCccEEEEEeCCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEEccc-ceeeEEecCcCCCeEEEEEcCCC--CeEEEEc
Q 001159 870 MTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTL--NALVSSG 944 (1135)
Q Consensus 870 ~~~~~~~~~~~h~~~v~~l~~sp~--~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~i~~l~~s~d~--~~l~s~~ 944 (1135)
...+....+.+|..+|.|+.||.. ..++||+++.|..|.+||+.. ..+++++.+|+..|+++.|.-.| ..++++|
T Consensus 489 q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscG 568 (1080)
T KOG1408|consen 489 QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG 568 (1080)
T ss_pred hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEecc
Confidence 999999999999999999999842 357999999999999999874 46788999999999999998877 7899999
Q ss_pred CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEE
Q 001159 945 ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPIS 1022 (1135)
Q Consensus 945 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~ 1022 (1135)
.|+.|++--.+....- .+-....+......+..++..|..+++++ +.|+.|+||++ +++..+.|...++|.+...
T Consensus 569 ADksimFr~~qk~~~g---~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 569 ADKSIMFRVNQKASSG---RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred CchhhheehhccccCc---eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 9998876544321110 01001111111245788999999999999 78999999999 9999999999999988888
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1023 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1023 ~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.+...|.|-|||+...|+++.++|..+|+++.++.+|. -.++.+.|.+ |-+.|++.+.||.|++|.++.
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs----------E~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS----------EAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc----------hheeeeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999888663 4566899999 678999999999999999864
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.9e-43 Score=378.72 Aligned_cols=562 Identities=16% Similarity=0.223 Sum_probs=367.6
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--------HHHHH--------------------------HH--hh
Q 001159 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQ 46 (1135)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~ 46 (1135)
..++++++++++||+..||+++.+.|.+|.++... ...+| .+ ..
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 34789999999999999999999999999874332 11111 00 01
Q ss_pred cccHHHH------HHHhcCCCcc-------cccchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHH
Q 001159 47 AGEWDEV------ERYLCGFTKV-------EDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1135)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~-------~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1135)
.-.|... +..-..|+.+ -..++. .++|+|+.|.||+|+.++....|..|+.+.--.++....+.+.
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1111111 1111122221 122344 4999999999999999999999999999876666677888888
Q ss_pred HHHHhhcccCccchhhhccCCC----chhHHHHHHHHHHhhcccCcccccccCCCCCchHHHHHHHHHHHHHHHhhCCCC
Q 001159 114 EITQLLTLDNFRQNEQLSKYGD----TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1135)
Q Consensus 114 ~l~~l~~~~~~~~~~~~~~~~~----~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~~ 189 (1135)
+|..+-...++.+++....+.. ..-+|. .++.|.+++.+... +-..-+..+|+|++..++....+.
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~-s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSRD-SFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHH-HHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 9988888887877776655544 223332 23344444444332 224568889999988887655443
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCC----CCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 001159 190 RPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPP----IGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHP 265 (1135)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~f~~~~~~~~~~~~g~~~~~~~~~~~~ 265 (1135)
+.......+ ..|---...+..+.+.+--.-.++..++..+++. +..-.| -+.++-. ++-..+
T Consensus 248 r~~~~~~~~-~g~~~~~i~g~~~~e~~~~~~~l~~~~~e~~~~~~~~~~~e~~D---------~~~~~~~----~~~~~~ 313 (707)
T KOG0263|consen 248 RRTTKPTAM-VGSEQESIAGEAKREINKQKVQLGLLLKEEEIEKKLPILLEVED---------DPNEPDN----EKLKKP 313 (707)
T ss_pred cccccchhh-cccccccccccchhhcccceeeecccccchhhhhcccccccCcc---------ccccccc----cccccc
Confidence 210000000 0000000000011111100000111222111000 000000 0000000 000000
Q ss_pred CccCCCCCCCCCCcc-cccccCCCCCCCCCccccCCcchhHHHhhcccCCcceeeecCCCCCCccccCCCcceeeEEeec
Q 001159 266 SMAAGPPGFVQPSSA-VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN 344 (1135)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~d~~~~~~~~~~~ 344 (1135)
++ ...+...+...+ ....+....|+. .... ....-+.+. +.+.......+.++.-++.++.
T Consensus 314 ~~-~~~~~~~k~~d~~~ps~d~iPlPp~-~~~d-~~~~~~~l~---------------d~~kr~~l~~~~lpSic~YT~~ 375 (707)
T KOG0263|consen 314 KK-KKLLSEEKKRDPNAPSRDRIPLPPL-KQVD-KLAELEALK---------------DEQKRVKLGRNSLPSICMYTFH 375 (707)
T ss_pred hh-hhhhhhhhccccCCCccccCCCCcc-cchh-HHHHHHHHH---------------HHHHHhhcCCCCCCcEEEEEEE
Confidence 00 000000000000 000111111111 0000 000001111 1111122235667888888888
Q ss_pred -CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccC---Ccee---------ecccccccchhhhhccCCCcce
Q 001159 345 -QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKV---------WDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 345 -h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
....++|+.||+|++ ++|.|..|..|++|.+...+...-+ .... -++.+.........+.||.++|
T Consensus 376 nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 577999999999998 8999999999999999854311100 0000 0111111222334488999999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
..+.|+|+.++|++++.|+++++|.+.+..++- .+.||..+|+++.|+|-|- +|||+|.|++.++|......+++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeecccCCchh
Confidence 999999999999999999999999999987655 7789999999999999998 89999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+.+|.+.|.|+.|||+. .++++||.|.++|+||+.++..+..+.+|.++|.+++|||+|++|++|+. ++.|.+
T Consensus 530 ifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKI 603 (707)
T ss_pred hhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEE
Confidence 999999999999999977 89999999999999999999999999999999999999999999999975 899999
Q ss_pred EECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999966 9999999999999999999999999998753
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.8e-42 Score=347.68 Aligned_cols=308 Identities=17% Similarity=0.295 Sum_probs=262.3
Q ss_pred ceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhh-cc----CCCcc
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL-LN----DAAIS 410 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~h~~~ 410 (1135)
+....+.+.|+.+|.+++|+|-..-++|+|+.|-..++|++.......... ..+...+ +. .....
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNKD 237 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccCC
Confidence 344556666999999999999876689999999999999987411111000 0000000 11 13357
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
|++++|+.+|..||+|+.||.++||+.... . ...+..|+++|.++.|+.+|. +|++++.|+++.+||..+|...
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l---~~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGN-L---ISTLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCch-h---hhhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEE
Confidence 999999999999999999999999998874 2 236788999999999999999 8999999999999999999999
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..+.-|..+-..+.|-.. ..+++++.|+.|+++.+...++..++.+|.+.|.++.|+|.|.+|++++. |++++
T Consensus 312 q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlk 384 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLK 384 (524)
T ss_pred EeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeE
Confidence 999999998777888543 68999999999999999999999999999999999999999999999985 89999
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCC---------CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
+|+.........+.+|.. .|..+.|+|.| ..+++++.|++|++||+..+.++.++..|.. +|++++|+
T Consensus 385 iWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS 461 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFS 461 (524)
T ss_pred eeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEec
Confidence 999999999999999998 89999999975 3688999999999999999999999976644 89999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCchhhhh
Q 001159 642 KEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 670 (1135)
|+|+++|+|+.||.|.||+..++ ++++.
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~-~l~~s 489 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTG-KLVKS 489 (524)
T ss_pred CCCcEEEecCCCCeeEeccccch-heeEe
Confidence 99999999999999999999888 54443
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=7.9e-38 Score=339.98 Aligned_cols=584 Identities=15% Similarity=0.150 Sum_probs=431.1
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 431 (1135)
..+..-|..++++.+-+....+||.+.-..+.- -..+...|+|++-..+- ..+|+. ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~--vy~A~g-~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDY--VYVASG-NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCce--EEEecC-cE
Confidence 555556666888888999999999887655432 13477889999875554 444333 34
Q ss_pred EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eee---eee-cCCCCCeeEEEee
Q 001159 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ---YTF-EGHEAPVYSVCPH 506 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~---~~~-~~h~~~v~~i~~~ 506 (1135)
|.+|.- ++.++ ..+..|.+.|.-+.- -|. .++++..++.+.||+...+ ..+ .++ +...+.|+++. |
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 33333 255677777776654 366 7889999999999998874 211 122 22223377764 5
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 6544467899999999999999999999999999999999999998888998875 899999999999999999977
Q ss_pred cCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCceEEEEe-CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 587 RKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+ .|++++|..||+.+.+ |+..|.+.+||++..+.+..+. .| ...|....|-|....+++++.|+.+++|=.+++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 55 8999999999976555 6667999999999988877765 44 347899999999999999999999999866544
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
.-..+.++.
T Consensus 321 dg~pR~LR~----------------------------------------------------------------------- 329 (910)
T KOG1539|consen 321 DGVPRLLRS----------------------------------------------------------------------- 329 (910)
T ss_pred CCcchheee-----------------------------------------------------------------------
Confidence 111111110
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEe-cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeec
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 823 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
..+|..+. .++.|. .+|..+++.+.|.+.+.+++........-. +...
T Consensus 330 -----------------------R~GHs~Pp-~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~-------~~~~ 378 (910)
T KOG1539|consen 330 -----------------------RGGHSAPP-SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG-------QLHN 378 (910)
T ss_pred -----------------------ccCCCCCc-hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc-------cccc
Confidence 01244555 777777 678888888899988887764432211100 0011
Q ss_pred CCCCcceeccCCCCCCCCCceEEEEeecC-----CCEEEEEe-CCeEEEEECCCccE-EEEEe-----CCCCCeEEEEEe
Q 001159 824 PPSGTLMTNDINESKPTEESAACIALSKN-----DSYVMSAS-GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFH 891 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~~h~~~~i~~l~~s~d-----g~~la~~~-dg~i~vwd~~~~~~-~~~~~-----~h~~~v~~l~~s 891 (1135)
..............-- -.+|..+++... .+.++..- +..++.|++..... ...+. .-...+++++.+
T Consensus 379 ~~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred ccccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe
Confidence 1111100000000000 345666666542 22333333 67899999987655 23332 123679999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceeeEEe---cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 892 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 892 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+ .|++.+.|+..|.|-+|++++|-....+ ..|.++|++++...-++.++|++.+|-+++||...........+.
T Consensus 458 ~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-- 534 (910)
T KOG1539|consen 458 F-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-- 534 (910)
T ss_pred c-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--
Confidence 9 9999999999999999999999988888 589999999999888999999999999999999987633322211
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
..+.++..+.....+++ ..|-.|+++|. +-+.++.+ .+|++.|++++|||||++|++++.|++|++||
T Consensus 535 -------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 535 -------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred -------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 45678888888888888 68889999999 66666665 46699999999999999999999999999999
Q ss_pred CCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC-CcEEEEecC
Q 001159 1047 AETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1101 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g~v~~W~~~ 1101 (1135)
+.++.++..+... ...+.+.|+| .|++|||+..| .-|++|--.
T Consensus 605 lpt~~lID~~~vd-----------~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 605 LPTGTLIDGLLVD-----------SPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccCcceeeeEecC-----------CcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 9999999876644 4567899999 78999999999 579999644
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=342.32 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=265.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--CCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--~~~ 422 (1135)
.+.+|..+.||+|++ ++|||+-+|.++||+..+...+.. |.||...|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 456999999999998 799999999999999998866654 8899999999999996 679
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
+|+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999876655 7889999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|+|++ .+++||+.|..-+|||++++.++..+.+|...|.+++|+|+|..|++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9998855 89999999999999999999999999999999999999999999999985 88999999999999999
Q ss_pred eecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
+.+|.+ -|+.+.|+| .|.+|++++.|++++||...+..+++++.+|.+ .|.++++++|+..+++++.|+++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 899999998 678999999999999999999999999998866 799999999999999999999999995
No 18
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4e-39 Score=342.03 Aligned_cols=572 Identities=13% Similarity=0.138 Sum_probs=375.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+..+++|++|||+|+ ++|+|- ..-.++||++.....+.. +..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 788884 455899999987665543 6789999999999999999
Q ss_pred EEEEeC--CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee---ecCCC
Q 001159 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEGHE 497 (1135)
Q Consensus 423 las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~h~ 497 (1135)
+++.+. |-.|.+||.+...... -+.-...|..++|+.||. +++|.+ +..|++|.++.++.... |.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5578889877643322 122456799999999999 889888 67899999987763321 11211
Q ss_pred CCeeEEEeec-----cCCc---cEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 498 APVYSVCPHH-----KESI---QFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 498 ~~v~~i~~~~-----~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
.-.-.+.++- .+.| .--++-+..|.+.-|. ..+.+-.+ ........|++.+ .+++++|.. ++.
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa----~g~ 281 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCA----KGM 281 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeec--hhhhhhhhhhhhccccceeeee--cceEEEeec----cce
Confidence 1111111100 0000 0011112233333331 11111100 1112233455554 568888775 889
Q ss_pred EEEEECCCCeEEEEeeccc--------------------C---CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001159 569 LVEWNESEGAIKRTYSGFR--------------------K---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--------------------~---~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
|++++..+-..+.++...+ . ...-.+.|++....+.+...|..++|||++.-+.+..
T Consensus 282 vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 282 VRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK 361 (1080)
T ss_pred eeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccc
Confidence 9999988755443332111 0 0223477898889999999999999999987443321
Q ss_pred ---EeCCCCCCCcceEEEcCC-----------CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCc
Q 001159 626 ---VDADGGLPASPRLRFNKE-----------GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 626 ---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+-.|. ..|+.+.--|- ...+++++.|++||+|++..+.. -..+..+.-...
T Consensus 362 ~~s~lyHS--~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils~~------------ 426 (1080)
T KOG1408|consen 362 CSSMLYHS--ACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILSAN------------ 426 (1080)
T ss_pred eeeeeecc--ceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccchhh------------
Confidence 11221 13443333220 23588999999999999976310 011100000000
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
..+..... ....+.. |...-++|-.. ......
T Consensus 427 l~ki~y~d----------------------------~~~q~~~---------d~~~~~fdka~-----------~s~~d~ 458 (1080)
T KOG1408|consen 427 LSKIPYED----------------------------STQQIMH---------DASAGIFDKAL-----------VSTCDS 458 (1080)
T ss_pred hhcCcccc----------------------------Cchhhhh---------hccCCcccccc-----------hhhcCc
Confidence 00000000 0000000 00001111000 000113
Q ss_pred ccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 772 ASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
...+ .+++++|+|++|++|...|.+++|++..... ...+ ..| +.+|.|+.||.
T Consensus 459 r~G~-R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------~~~~--eAH-esEilcLeyS~ 511 (1080)
T KOG1408|consen 459 RFGF-RALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------TCFM--EAH-ESEILCLEYSF 511 (1080)
T ss_pred ccce-EEEEECCCcceecccCccCceEEEEehhhhh-----------------------hhhe--ecc-cceeEEEeecC
Confidence 3445 9999999999999999999999998764211 0011 128 99999999986
Q ss_pred ---CCCEEEEEe-CCeEEEEECCC-ccEEEEEeCCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEEcccceeeEEecCc-
Q 001159 852 ---NDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQD-NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH- 924 (1135)
Q Consensus 852 ---dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~sp~~-~~~lasg~~dg~v~iwd~~~~~~~~~l~~h- 924 (1135)
..++||+++ |.-|.|+|+.. ..+++++.+|...|+++.|.-.+ +...++++.|+.|.+-..........+.-|
T Consensus 512 p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 512 PVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHT 591 (1080)
T ss_pred chhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccc
Confidence 467999999 88999999864 56788899999999999998722 267788899988765433321111222222
Q ss_pred ----CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEE
Q 001159 925 ----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQIS 999 (1135)
Q Consensus 925 ----~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~ 999 (1135)
...++.++..|..+++++++.|..|+||++++++..+. .+...+|. +....+...|.|.|+|+ +.|+++.
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~--FKgs~~~e---G~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS--FKGSRDHE---GDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee--ecccccCC---CceEEEEECCCccEEEEeecCCceE
Confidence 24588999999999999999999999999999986543 33334443 56778999999999999 6899999
Q ss_pred EEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1000 VYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1000 vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
++|. +++++.+.. +|+..|+.+.|++|.+.|++.+.||+|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~---GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMT---GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhc---CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999 999988764 5699999999999999999999999999999985
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.1e-41 Score=336.41 Aligned_cols=257 Identities=19% Similarity=0.315 Sum_probs=237.6
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|.+.+|..+.||+|++.||+|+.+|.+++|+......+. .|.+|...|.++.|+|......++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 577899999999999999999999999999999875444 88999999999999998422379999999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+..++..+.+|...|..++|+|++ ++|.|+|.|.+-++||+++........+|...|.+++|.+||..+++||.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999976 99999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 644 (1135)
|..-+|||+++|..+..+.+|.+ .|..++|+|+|..+++||.|++++|||++...++.++..|.. -|+.|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 77789999999999999999988 999999999999999999999999999999999999998865 799999998 88
Q ss_pred CEEEEEECCCcEEEEEcCCCchhhhhccccc
Q 001159 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 675 (1135)
.+|++++.|++++||...+. .+++.+.||.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe 430 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAGHE 430 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcCCc
Confidence 99999999999999998888 6677666543
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-38 Score=330.97 Aligned_cols=475 Identities=15% Similarity=0.262 Sum_probs=357.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.|-++.|+|..+++| ++-..|.|.||+.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceEE-EeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 778999999999999655 567899999999999887764 333566899999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i 503 (1135)
+|+.|..|+||+.++++.++ .+.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 8899999999999999998 8999999999999999864 6788999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC--CEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+|+|.+. +.++++|.|++|++|.+....+..++.+|...|+|+.|-+-| .+|++|+. |..|++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999865 899999999999999999999999999999999999998755 58999874 8899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++.||.. .|..++|+|.-..+++|++||+++||+..+.+...++..... .|+|++-.+.+..+++|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 899999999999999999999999999999988888876544 7999999998888999998887765 22
Q ss_pred CCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccc
Q 001159 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1135)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
-.... .-.+. ..
T Consensus 298 greeP-~vsMd-------------------------------------------------------------~~------ 309 (794)
T KOG0276|consen 298 GREEP-AVSMD-------------------------------------------------------------SN------ 309 (794)
T ss_pred cCCCC-ceeec-------------------------------------------------------------CC------
Confidence 22200 00000 00
Q ss_pred cccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCee
Q 001159 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 821 (1135)
Q Consensus 742 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
| -.+|... +.| ..+.. -+.+.++
T Consensus 310 ---g-KIiwa~~-------------------~ei-~~~~~-------ks~~~~~-------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVH-------------------SEI-QAVNL-------KSVGAQK-------------------------- 332 (794)
T ss_pred ---c-cEEEEcC-------------------cee-eeeec-------eeccCcc--------------------------
Confidence 0 0011110 000 00000 0000000
Q ss_pred ecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 001159 822 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg 901 (1135)
+...|+.+....+..+.-+-....++.||+|+++++++||.-.||..-..+ ..+.+.-....|++ |.+..|+-
T Consensus 333 -ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avR 405 (794)
T KOG0276|consen 333 -EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVR 405 (794)
T ss_pred -cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEE
Confidence 111121111111110000223346788999999999999999999743221 12445677889999 77788888
Q ss_pred eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEE
Q 001159 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 981 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 981 (1135)
..++.|+++ .+.+..+.+..... ...--.|.+|...+ ++.+++||.++++.+.. .. .....+
T Consensus 406 es~~~vki~--knfke~ksi~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrr-----I~------v~~k~v 467 (794)
T KOG0276|consen 406 ESNGNVKIF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRR-----IE------VTSKHV 467 (794)
T ss_pred ecCCceEEE--ecceeccccccccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEE-----Ee------ecccee
Confidence 889999999 56666666553211 12222455565555 55699999999874432 22 123589
Q ss_pred EECCCCcEEEEEecCeEEEEec
Q 001159 982 QFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 982 ~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.|+.+|.+++.+.|...+++..
T Consensus 468 ~w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 468 YWSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred EEecCCCEEEEEecCceeEEEe
Confidence 9999999999988887666665
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-38 Score=305.59 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=264.8
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..++|+ |...|.++.|++|++ .+++++.||.+.|||.-+..+.+- +.-...+|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEEC
Confidence 357787 999999999999998 688999999999999988766543 33367899999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCC---CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPT---GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~---~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|.|+++|+|+-|+...||++.+. ...+....+.+|.+.+.|+.|.+|++ |+|++.|.+..+||+++|+.+..|.
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEec
Confidence 99999999999999999999865 12344457899999999999999775 8999999999999999999999999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|.+.|.++.+.|. +++.+++|+-|+..++||++.+.+...+.+|...|++++|.|+|.-+++|+. |++.++||+
T Consensus 184 GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDl 258 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDL 258 (343)
T ss_pred CCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEee
Confidence 99999999999996 5699999999999999999999999999999999999999999999999985 889999999
Q ss_pred CCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+..+.+..|.... ...|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+ .|.++..+|||..+++|+.|
T Consensus 259 RaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 259 RADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 9999998887543 23699999999999999999999999999999999999998866 89999999999999999999
Q ss_pred CcEEEEE
Q 001159 654 NGIKILA 660 (1135)
Q Consensus 654 g~i~iwd 660 (1135)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 22
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.2e-37 Score=328.47 Aligned_cols=632 Identities=14% Similarity=0.186 Sum_probs=414.7
Q ss_pred cccCCCcceeeEEeec-CCCCeeEEEEecCCC--eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~--~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
+..+|........++. |..+|+|+.|-|+.+ -.+++|+.||.|.+|.++......-. .+.
T Consensus 36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~ 98 (764)
T KOG1063|consen 36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------TIQ 98 (764)
T ss_pred EEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------eec
Confidence 3344444445566666 999999999999876 14789999999999999833322110 134
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeeccc--CCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV--GGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~--~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+|... +++++.......+...|+.+.+||.+..+ +.....+.--. .--.|+++.++.+..+++.|+.+..|.++.
T Consensus 99 g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 99 GHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred Cccee--EEEEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 55544 44554444444444789999999996544 11111222112 223567777765555788888888888887
Q ss_pred cCCC--eeeeeecCCCCCeeEEEeeccCC-ccEEEEEEcCCeEEEEeCcCCC------------------------ce--
Q 001159 484 VVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------SR-- 534 (1135)
Q Consensus 484 ~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~------------------------~~-- 534 (1135)
-.+. +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.-.. ..
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5533 45678899999999999875443 4688999999999999764332 00
Q ss_pred -----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC--eEEEEee----cccCCceeEEEecCCCCEE
Q 001159 535 -----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 535 -----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~i~~s~~~~~l 603 (1135)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. --+...+ ++........-|+|+++.+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 023488999999999999988888876 788999987654 2222222 2223357788899999999
Q ss_pred EEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCC
Q 001159 604 LAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
++-+..|..++|.... .......-..++...|..++|+|.|.+|++.+.|.+-|+|-.-..++. -|..
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-----wHEi------ 400 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-----WHEI------ 400 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc-----eeee------
Confidence 9999999999998332 223333333355668999999999999999999999999864311110 1110
Q ss_pred CCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcccee
Q 001159 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1135)
Q Consensus 683 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~ 762 (1135)
T Consensus 401 -------------------------------------------------------------------------------- 400 (764)
T KOG1063|consen 401 -------------------------------------------------------------------------------- 400 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC
Q 001159 763 ALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 842 (1135)
..| +.|...+ ++++|-+...++++++....+|+|+.+..-........ ....+.. ..+.. ..
T Consensus 401 --aRP-QiHGyDl-~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~--------g~~~~~~--~~~p~----gA 462 (764)
T KOG1063|consen 401 --ARP-QIHGYDL-TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAIC--------GKCFKGS--DELPD----GA 462 (764)
T ss_pred --ccc-ccccccc-eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHh--------CccccCc--hhccc----cc
Confidence 000 1266666 89999886666888888999999986542000000000 0000000 00000 12
Q ss_pred ceEEEEeecCCCEE-EEEe--CCe-----------EEEEECC---------CccEEEEEeCCCCCeEEEEEecCCCcEEE
Q 001159 843 SAACIALSKNDSYV-MSAS--GGK-----------VSLFNMM---------TFKVMTMFMSPPPAATFLAFHPQDNNIIA 899 (1135)
Q Consensus 843 ~i~~l~~s~dg~~l-a~~~--dg~-----------i~vwd~~---------~~~~~~~~~~h~~~v~~l~~sp~~~~~la 899 (1135)
.|..+-.|.+.-+. .+-+ .+. ..+.... ....++.+.||..+|.+++.+| +++++|
T Consensus 463 ~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliA 541 (764)
T KOG1063|consen 463 NVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIA 541 (764)
T ss_pred ccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEe
Confidence 22222222211110 0000 000 0000000 1224566789999999999999 899999
Q ss_pred EEeCC-----CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCC
Q 001159 900 IGMED-----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 974 (1135)
Q Consensus 900 sg~~d-----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
+++.. ..|++|+..+...++.+.+|+-.|+.|+|||||++|+++|.|+++.+|........... ......|.
T Consensus 542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht-- 618 (764)
T KOG1063|consen 542 SACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT-- 618 (764)
T ss_pred ehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc--
Confidence 99865 46999999999888999999999999999999999999999999999998654432222 22244454
Q ss_pred CCCceEEEECCCCcEEEE-EecCeEEEEec-CC--ceeeccCCCCCCCCCEEEEEEee-----CCCEEEEEeCCCeEEEE
Q 001159 975 LVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALPAPISSAIYSC-----DGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 975 ~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~--~~~~~~~~~~~h~~~i~~~~~s~-----d~~~l~~~~~dg~I~vw 1045 (1135)
.-|..+.|+||+.++++ +.|.+|+||.. +. +.+..+. ...+...|+++++.| .+..+++|-+.|.|.+|
T Consensus 619 -RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a-~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 619 -RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA-CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred -eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc-hhccCCceeeEEeeccccccccceEEEEecccEEEEE
Confidence 67889999999999999 68999999999 55 5555432 234588999999976 22368899999999999
Q ss_pred ECCCceeeeeeCC---ceec-cccccCCCCccEEEEecCC---------CCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRFRCRIGP---SAYI-PTYAVSNTAHPLVIAPHPS---------EPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
....-....+... ...+ +...+. ..+..+.|.|. ....|++|++|.+++++++.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 697 RRKREHRQVTVGTFNLDTRLCATIGPD--SAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ecccccccccceeeeeccccccccChH--HhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9662211111110 0001 111122 23335666653 22356999999999999875
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7e-38 Score=298.24 Aligned_cols=298 Identities=22% Similarity=0.313 Sum_probs=254.7
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+..+++ |++.|+.++..+.++.++.+++.|..+.+|++....... -.+...+.||...|..++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--------------G~~~r~~~GHsH~v~dv~~ 71 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--------------GVPVRRLTGHSHFVSDVVL 71 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--------------CceeeeeeccceEecceEE
Confidence 3456677 999999999999988899999999999999997653221 1122347899999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
++||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .++||+.|++|++|++.. .+..++..+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecC
Confidence 9999999999999999999999986555 7889999999999999999 799999999999999654 455555443
Q ss_pred --CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 497 --EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 497 --~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.+.|.|++|+|+.+..+|++++.|+++++||+++-+....+.+|.+.++.+++||||...++|+. ++.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence 78999999999987789999999999999999999999999999999999999999999999874 899999999
Q ss_pred CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-------CCCcceEEEcCCCCEE
Q 001159 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLL 647 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l 647 (1135)
+.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++..+..+..... .....+++|++||..|
T Consensus 222 ~~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 222 NEGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred cCCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 9999988776544 79999999986655555 455699999999988877754321 2234578999999999
Q ss_pred EEEECCCcEEEEEcC
Q 001159 648 AVTTSDNGIKILANS 662 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~ 662 (1135)
+.|..|+.|++|.+.
T Consensus 299 f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeecCCcEEEEEee
Confidence 999999999999864
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=320.68 Aligned_cols=556 Identities=14% Similarity=0.213 Sum_probs=409.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.|+|++=..+- .+ +++ ...|.+|.- |+.+. +.+.+|...|.-+. |=|.+++
T Consensus 75 lp~~I~alas~~~~--vy-~A~-g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY--VY-VAS-GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce--EE-Eec-CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 77899999876663 22 232 346777763 32221 12445776676654 4688999
Q ss_pred EEeCCCeEEEEEeCCC-Cce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 425 VAFSKHIVHLYTYNPT-GEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~-~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
++..++.+.||+..++ ... .....+....+.|+++.- |..--..++.|+.+|.+++|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 221 111122222333777654 4432226899999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.-+|.- +.++.|..+|+|.+++++..+.+..+....+.|++++|.-||+.+++.+. ..|.+.+||++..+.+..
T Consensus 208 ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 9988876 79999999999999999999999999887899999999999998776653 478899999999998888
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc----eEEEEeCCCCCCCcceEEEc-CCCCEEEEEECCCcEE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 657 (1135)
....+.+.+....|-+....+++++.|+.+++|=.+++. .+..-.+| ..+..++.|. .+|..+.+++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCC--CCCchheeeeccCcEEEEecccCcchh
Confidence 875444488999999999999999999999998666433 33333444 4478899998 5899999999999999
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
.+++.........-..|.....
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~---------------------------------------------------------- 382 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRA---------------------------------------------------------- 382 (910)
T ss_pred hhhhhHHHHhHhhccccccccc----------------------------------------------------------
Confidence 9887544111111111110000
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-----CcceeEecccceeeeEEeccccCCCCCc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-----GLSLLALASNAVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 812 (1135)
+.+.+..... + .-.+| ..+++... ...+.+.-.+...+.|++..... |+
T Consensus 383 -------kk~~~~~~~~---------~------k~p~i-~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~---G~ 436 (910)
T KOG1539|consen 383 -------KKVNVFSTEK---------L------KLPPI-VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS---GR 436 (910)
T ss_pred -------ccccccchhh---------h------cCCcc-eeeecccchhhhhcceeEEecCcceEEEEeccCccc---cc
Confidence 0000000000 0 00111 22222211 11123333355667777653211 00
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE---eCCCCCeEEE
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---MSPPPAATFL 888 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---~~h~~~v~~l 888 (1135)
. +.++. .+.. . ...+++++.++.|++.+.|+ .|.|.+|++++|-....+ ..|..+|+.+
T Consensus 437 ~-------~L~~~-------~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl 499 (910)
T KOG1539|consen 437 H-------VLDPK-------RFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL 499 (910)
T ss_pred E-------EecCc-------cccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence 0 00100 0000 1 57899999999999999998 899999999999988888 5799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+... -++.+++++.+|.+.+||..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+.+ .++..
T Consensus 500 a~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f 572 (910)
T KOG1539|consen 500 AVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREF 572 (910)
T ss_pred EecC-CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHh
Confidence 9998 789999999999999999999888888773 4568899999888999999999999999999876 56677
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-CeEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIGVF 1045 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-g~I~vw 1045 (1135)
.||. ..+++++|||||++|++ +.|++|++||+ ++.++-.+.. ..+.+++.|||+|.+|||+..| .-|++|
T Consensus 573 ~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 573 WGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8887 78999999999999999 68999999999 8888877655 5689999999999999999888 679999
Q ss_pred ECCC
Q 001159 1046 DAET 1049 (1135)
Q Consensus 1046 d~~~ 1049 (1135)
--.+
T Consensus 646 sNks 649 (910)
T KOG1539|consen 646 SNKS 649 (910)
T ss_pred Echh
Confidence 8554
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=295.59 Aligned_cols=248 Identities=16% Similarity=0.223 Sum_probs=229.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
++||.+.|.++.|++|+++|++++.||.+.|||.-+....+ .+.-....|..++|+|.|+ ++|+|+-|+...||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEEe
Confidence 78999999999999999999999999999999998876554 4555678899999999999 899999999999999
Q ss_pred cCCC------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC-CCCEE
Q 001159 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTRL 556 (1135)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 556 (1135)
+.+. +..+.+.+|.+.+.++.|..+ ..|+|+|.|.++.+||+++++....+.+|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 9855 345678999999999999763 6899999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++|+. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+........|+
T Consensus 203 vSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 203 VSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred Eeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 99986 88899999999999999999998 89999999999999999999999999999999999998777777899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++|+..|++|.+|..|.++.+||.-.+
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 9999999999999999999999997655
No 26
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-36 Score=326.74 Aligned_cols=582 Identities=15% Similarity=0.232 Sum_probs=395.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
....|-.++|+|..++ +.++-..|.|.+||++-+..+.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999996 55677899999999999988765 788999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.|-.|++|+.++.+++. ++.||-+.|..+.|++.-. +|+|+|+|.+|+||+..+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999986655 8889999999999999988 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|.. +.++++|.|.+||+||+...+....-.+ ++.=...+..+ ..-++-....-....+.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~-----------~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG-----------NSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc-----------chhhcCCcCeeeeeeec
Confidence 99987 7999999999999999975443322111 00000011111 01112111223345678
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
||.. .|+.++|+|.-..+++|++|..|++|.+..-+....-...+|...|.++-|+|...++++.+.|++|+|||+...
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 8887 899999999999999999999999999987665444444455668999999999999999999999999999876
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
..++++......... ...-|..++++++.|
T Consensus 283 -t~v~tfrrendRFW~-------------------------------------------------laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 283 -TSVQTFRRENDRFWI-------------------------------------------------LAAHPELNLFAAGHD 312 (1202)
T ss_pred -cceeeeeccCCeEEE-------------------------------------------------EEecCCcceeeeecC
Confidence 555666443332211 122345567777777
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecC
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 824 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
+-+.+|.+..- . .+.+++.++ |+-.- |..|+-+|+.+.+..+
T Consensus 313 sGm~VFkleRE-----------------r---pa~~v~~n~--LfYvk-d~~i~~~d~~t~~d~~--------------- 354 (1202)
T KOG0292|consen 313 SGMIVFKLERE-----------------R---PAYAVNGNG--LFYVK-DRFIRSYDLRTQKDTA--------------- 354 (1202)
T ss_pred CceEEEEEccc-----------------C---ceEEEcCCE--EEEEc-cceEEeeeccccccce---------------
Confidence 77777776530 0 222332222 33332 6677777765422111
Q ss_pred CCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe---CCeEEEEECCCccEEEEE-e--CCCCCeEEEEEecCCCcEE
Q 001159 825 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMF-M--SPPPAATFLAFHPQDNNII 898 (1135)
Q Consensus 825 ~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~-~--~h~~~v~~l~~sp~~~~~l 898 (1135)
+.. +...+....++.++.|+|....+..++ .|.-.++.+.+......- . .......++-.+. +++.
T Consensus 355 ----v~~--lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfa 426 (1202)
T KOG0292|consen 355 ----VAS--LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFA 426 (1202)
T ss_pred ----eEe--ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceE
Confidence 000 111000146788999999877776664 366666665432110000 0 0111222232222 2222
Q ss_pred EEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc
Q 001159 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 978 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 978 (1135)
+.--.+..+-+=++.+. ..+.+... ..+..+-+.-+|.+|+.. ...|.++|++..+......+ ..|
T Consensus 427 vl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~----------s~v 492 (1202)
T KOG0292|consen 427 VLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV----------SKV 492 (1202)
T ss_pred EEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec----------Cce
Confidence 22222445555554432 22333221 234456666667666543 44599999998775443221 457
Q ss_pred eEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc--eeeeee
Q 001159 979 TKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL--RFRCRI 1056 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~--~~~~~~ 1056 (1135)
..+.||+|..+++.-+...|.|++.+.+.+..+.. .-.|.+-+|..+|-+|.+... .|+ |.+.+| -.++++
T Consensus 493 kyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTL 565 (1202)
T KOG0292|consen 493 KYVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTL 565 (1202)
T ss_pred eEEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEec
Confidence 89999999999999888999999997777766543 457889999999988887653 232 333333 233444
Q ss_pred CCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1057 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
... ++++.+ .|+.+.+=..|+.+....+.-.+
T Consensus 566 d~~-----------iyitkv-----~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 566 DKP-----------IYITKV-----KGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred ccc-----------eEEEEe-----eCCEEEEEecCCCeEEEeechHH
Confidence 322 555554 47888888999999888876554
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-35 Score=310.90 Aligned_cols=473 Identities=15% Similarity=0.214 Sum_probs=347.5
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+.-+ .+++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44589999999999999999999999999999999987776 6666788999999998877 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1135)
..+++.++.|..|.+.|.+++.||.. .+++|+|.|-+|++||.+.. .+..++.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 79999999999999999875 45678999999999999999 5567888886
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|++|++|.+....+..++.+|.. .|+|+++-+-| .++++|++|.+|+|||..+..+++++.+|.+ .|+.+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 88999999999999999999998 89999998744 6999999999999999999999999998876 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|.-.++++|+.||+++||+..+- ++.+.+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997665 22222210
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKL 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~i 799 (1135)
...++ .+++..+.+..+++|...|.+.+
T Consensus 268 ---------------------------------------------------gleRv-W~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERV-WCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ---------------------------------------------------CCceE-EEEeecCCCCeEEEeccCCcEEE
Confidence 11233 66666666666677766666554
Q ss_pred EEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEe
Q 001159 800 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 879 (1135)
Q Consensus 800 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~ 879 (1135)
= + ......+..++.|+.+-+.. +
T Consensus 296 ~-l--------------------------------------greeP~vsMd~~gKIiwa~~-~----------------- 318 (794)
T KOG0276|consen 296 K-L--------------------------------------GREEPAVSMDSNGKIIWAVH-S----------------- 318 (794)
T ss_pred E-c--------------------------------------cCCCCceeecCCccEEEEcC-c-----------------
Confidence 1 0 12222344555555433221 1
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee----EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 880 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK----TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 880 ~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~----~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.|..+.. -+.+.++ ++..|+.+ +.+-.-.=....++-||+|++++.|+ ||...||..-
T Consensus 319 ----ei~~~~~--------ks~~~~~-----ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTal 380 (794)
T KOG0276|consen 319 ----EIQAVNL--------KSVGAQK-----EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTAL 380 (794)
T ss_pred ----eeeeeec--------eeccCcc-----cccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEee
Confidence 1111110 0111111 22222221 11111111234577899998776665 8888888643
Q ss_pred CCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEE
Q 001159 956 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVY 1034 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~ 1034 (1135)
... .... +......|++|....++ -+++.|+++ -+++....+.+.. .+.+--.|.+|.
T Consensus 381 a~R-------nK~f------G~~~eFvw~~dsne~avRes~~~vki~-knfke~ksi~~~~-------~~e~i~gg~Llg 439 (794)
T KOG0276|consen 381 ALR-------NKAF------GSGLEFVWAADSNEFAVRESNGNVKIF-KNFKEHKSIRPDM-------SAEGIFGGPLLG 439 (794)
T ss_pred ehh-------hccc------ccceeEEEcCCCCeEEEEecCCceEEE-ecceecccccccc-------ceeeecCCceEE
Confidence 321 1111 34578899999776676 678889888 5566555554321 122223344444
Q ss_pred EEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1035 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1035 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
...++.+++||-++++++++|. +.+-.+.|+. +|.+++.+++|. .++..++
T Consensus 440 -~~ss~~~~fydW~~~~lVrrI~-------------v~~k~v~w~d-~g~lVai~~d~S-fyil~~n 490 (794)
T KOG0276|consen 440 -VRSSDFLCFYDWESGELVRRIE-------------VTSKHVYWSD-NGELVAIAGDDS-FYILKFN 490 (794)
T ss_pred -EEeCCeEEEEEcccceEEEEEe-------------eccceeEEec-CCCEEEEEecCc-eeEEEec
Confidence 4567789999999999999988 3344677765 677888777764 5555554
No 28
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.1e-35 Score=312.51 Aligned_cols=538 Identities=16% Similarity=0.204 Sum_probs=362.0
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC---eEEEEeC
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~---~las~~~ 428 (1135)
..|.|.+ ++|.| ....|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 45555 35689999977653322 2789999999999999888 8999999
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe--eeeeecCCCC--CeeEEE
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEA--PVYSVC 504 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~--~v~~i~ 504 (1135)
|+.|.+|.+.. +.+.....+++|...+. ++...-. ...+...|+++.+||.+..+ +...+.-..+ --.|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~--cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECV--CVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEE--EEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 44555667777765554 4443332 22333789999999985544 2223322222 234555
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCC--CceeEecCCCCcEEEEEEcCCCC---EEEEEecCCCCCCeEEEEECCCCe-
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1135)
+.++.+.-.++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +|++++ +|..|++|.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 556443345566777888888865533 34557899999999999987655 444554 48899999874322
Q ss_pred --------------------EEEE----------eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEE
Q 001159 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTV 626 (1135)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 626 (1135)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+.. -+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 99999999999999999999999999887642 22222
Q ss_pred eC--C-CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccc
Q 001159 627 DA--D-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 627 ~~--~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 703 (1135)
.. - +.........|+|++..+++-+..|..++|...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 21 1 112246778888888888888888888888722210
Q ss_pred cccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec
Q 001159 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 783 (1135)
.|... ....+|...| +.++|.|
T Consensus 350 ---------------------------------------------~w~~~------------~~iSGH~~~V-~dv~W~p 371 (764)
T KOG1063|consen 350 ---------------------------------------------FWTQE------------PVISGHVDGV-KDVDWDP 371 (764)
T ss_pred ---------------------------------------------ceeec------------cccccccccc-eeeeecC
Confidence 00000 0001244444 5555555
Q ss_pred CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCe
Q 001159 784 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK 863 (1135)
Q Consensus 784 dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~ 863 (1135)
.|.+|++.+.|.+-|++
T Consensus 372 sGeflLsvs~DQTTRlF--------------------------------------------------------------- 388 (764)
T KOG1063|consen 372 SGEFLLSVSLDQTTRLF--------------------------------------------------------------- 388 (764)
T ss_pred CCCEEEEeccccceeee---------------------------------------------------------------
Confidence 55555555555544443
Q ss_pred EEEEECC----CccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------------------------
Q 001159 864 VSLFNMM----TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------------------------- 914 (1135)
Q Consensus 864 i~vwd~~----~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------------------------- 914 (1135)
-.- +...+..-+-|...++|++|-+ ....+++|.+.+.+|+|+...
T Consensus 389 ----a~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 389 ----ARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ----cccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 221 1112222233555666666665 344555555555666665210
Q ss_pred ------------------c---------------------------------eeeEEecCcCCCeEEEEEcCCCCeEEEE
Q 001159 915 ------------------D---------------------------------EVKTKLKGHQNRITGLAFSPTLNALVSS 943 (1135)
Q Consensus 915 ------------------~---------------------------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~ 943 (1135)
| ..++.+.||...|++++.+|+|+++||+
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASa 543 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASA 543 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeeh
Confidence 0 0123467999999999999999999999
Q ss_pred cCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec--CCceeeccCCCC
Q 001159 944 GAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS--KLECSRSWSPKD 1015 (1135)
Q Consensus 944 ~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~--~~~~~~~~~~~~ 1015 (1135)
+.. ..|++|+..++.. .+.+.+|. ..|+.++|||||++|++ +.|+++.+|.. +...-..+....
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~-----~~~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQ-----VQELEGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred hhhCCccceEEEEEeccchhh-----hheecccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence 864 4599999999873 44567777 78999999999999999 89999999998 222223355567
Q ss_pred CCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc--eeeeeeCCceeccccccCCCCccEEEEecCCC----CCEEEEE
Q 001159 1016 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL--RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE----PNQIALG 1089 (1135)
Q Consensus 1016 ~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sg 1089 (1135)
.|..-|.++.|+||+.+++|+|.|.+|+||....+ +.+.++... .++ ..++++++.|.+ +..++.|
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~------~~~--~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL------KFS--LAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh------ccC--CceeeEEeeccccccccceEEEE
Confidence 88999999999999999999999999999999988 545443211 122 333455555533 3488999
Q ss_pred ecCCcEEEEecC
Q 001159 1090 MSDGAVHVVEPS 1101 (1135)
Q Consensus 1090 ~~dg~v~~W~~~ 1101 (1135)
-+.|.|.+|..+
T Consensus 688 le~GeI~l~~~~ 699 (764)
T KOG1063|consen 688 LEKGEIVLWRRK 699 (764)
T ss_pred ecccEEEEEecc
Confidence 999999999976
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=283.15 Aligned_cols=287 Identities=17% Similarity=0.275 Sum_probs=246.3
Q ss_pred CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001159 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 ~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 436 (1135)
+..-|||++++|.+|++|...+|.+..+ +....+.|+.+...||++.||+++.. .|++||
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD 67 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYD 67 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEE
Confidence 3445899999999999999999998765 34456789999999999999999765 599999
Q ss_pred eCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEE
Q 001159 437 YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 516 (1135)
Q Consensus 437 ~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s 516 (1135)
+.++... +...+.+|...|+++.|..||+ .++|||+||+++|||++...+.+.++ |..+|+++..+|+. ..|++
T Consensus 68 ~~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis 141 (311)
T KOG0315|consen 68 LNSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELIS 141 (311)
T ss_pred ccCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEe
Confidence 9998763 5568999999999999999999 89999999999999999977777775 78999999999976 78999
Q ss_pred EEcCCeEEEEeCcCCCceeEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC------eEEEEeecccCC
Q 001159 517 TAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKR 589 (1135)
Q Consensus 517 ~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~ 589 (1135)
|..+|.|++||+....+...+.. ....|.+++..|||.+++++.. .|..++|++-++ .++..++.|..
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~- 216 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG- 216 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-
Confidence 99999999999998877665544 4458999999999999998853 889999998754 35567788887
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhh
Q 001159 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 590 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 668 (1135)
-+..+.+|||+++|+++|.|.+++||+.++. +....+.+| ...+..++||.||.+|++|+.|+.+++|++..+ +..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v 293 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEV 293 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC-cee
Confidence 7888899999999999999999999999987 444445544 558999999999999999999999999999999 666
Q ss_pred hhccccccc
Q 001159 669 RMLEGRAMD 677 (1135)
Q Consensus 669 ~~~~~~~~~ 677 (1135)
+...+|...
T Consensus 294 ~qy~gh~K~ 302 (311)
T KOG0315|consen 294 RQYQGHHKA 302 (311)
T ss_pred eecCCcccc
Confidence 677776543
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=9.6e-34 Score=290.58 Aligned_cols=525 Identities=16% Similarity=0.227 Sum_probs=384.2
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
.+-+-|.|..+...+ +.+.+++.+...+.. +.+|...|.|++.+||.-.+|+|-.-|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCcccc
Confidence 456678887433333 366777776533322 678999999999999999999875444
Q ss_pred --------eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCe--EEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 431 --------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ--LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 431 --------~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
.++|||..+-..+. .+......|.|++|++-+.. +..+--+.+..+.+||...+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999977654444 55566778999999985433 233334567789999999998888887778889
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE---ecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
....|+|..+ + ++.....+.+.+|+.+.+..... +.. ....|.|++|.++|..+- + |.+|.|.+|+..+
T Consensus 204 ~~a~FHPtd~-n-liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-N-LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-c-EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence 9999999874 4 44455578999999987765442 222 235899999999997654 3 3488999999999
Q ss_pred CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
.+..+....|.+ .|.+++...+|. |++|+.|..|..|| ...+.+...+.....+.|..++=...+ |++|+..+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888888777776 899999999886 45599999999999 556666666666666677777654433 6677766666
Q ss_pred EEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccc
Q 001159 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.-=.++++..+. .
T Consensus 352 L~Gt~~~~f~~~--v----------------------------------------------------------------- 364 (626)
T KOG2106|consen 352 LQGTLENGFTLT--V----------------------------------------------------------------- 364 (626)
T ss_pred EEeeecCCceEE--E-----------------------------------------------------------------
Confidence 554444441110 0
Q ss_pred ccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccccc
Q 001159 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
..|..+. ..++.+|+..++++++.|+.+++|+-.
T Consensus 365 --------------------------------~gh~del-wgla~hps~~q~~T~gqdk~v~lW~~~------------- 398 (626)
T KOG2106|consen 365 --------------------------------QGHGDEL-WGLATHPSKNQLLTCGQDKHVRLWNDH------------- 398 (626)
T ss_pred --------------------------------Eecccce-eeEEcCCChhheeeccCcceEEEccCC-------------
Confidence 1144455 899999999999999999999999611
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCC
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 895 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 895 (1135)
-.+|... - ..++.|+.|+|.| .+|.|. .|...|.|.++...+..-.. +..+++++|+| +|
T Consensus 399 --k~~wt~~-------------~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G 459 (626)
T KOG2106|consen 399 --KLEWTKI-------------I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DG 459 (626)
T ss_pred --ceeEEEE-------------e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CC
Confidence 0122211 1 6788899999999 899998 89999999999666555444 88999999999 99
Q ss_pred cEEEEEeCCCcEEEEEcccc-eeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC--
Q 001159 896 NIIAIGMEDSSVQIYNVRVD-EVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-- 971 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~-~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-- 971 (1135)
.+||.|+.|+.|+||.+..+ ...... +.|..+|+.|.||+|+++|.+.+.|-.|..|.....+.... .+...-.
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts--~kDvkW~t~ 537 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS--VKDVKWATY 537 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce--ecceeeeee
Confidence 99999999999999998754 333333 23458999999999999999999999999994433222111 1111000
Q ss_pred ----------CCCCCCceEEEECCCCcEEEEE-ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 972 ----------QSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 972 ----------~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
......+..++-+.+.+++|++ ..|.|++|.. -......+....+|++-|++++|+.+...|++.+.|
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D 617 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKD 617 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCC
Confidence 0011345566677788888886 4689999998 333333445556889999999999999999888899
Q ss_pred CeEEEEEC
Q 001159 1040 GAIGVFDA 1047 (1135)
Q Consensus 1040 g~I~vwd~ 1047 (1135)
.+|..|++
T Consensus 618 ~Si~qW~l 625 (626)
T KOG2106|consen 618 TSIMQWRL 625 (626)
T ss_pred ceEEEEEe
Confidence 99999986
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-36 Score=297.38 Aligned_cols=309 Identities=19% Similarity=0.290 Sum_probs=272.2
Q ss_pred ecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccch
Q 001159 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
..|.+..-....+-..+........|..+|+.+-|+|+-. +.|+++.|++|++||..+|+....
T Consensus 82 g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~--------------- 145 (406)
T KOG0295|consen 82 GDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS--------------- 145 (406)
T ss_pred CCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh---------------
Confidence 3444433333333333444445555899999999999997 889999999999999999988654
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
+.||...|..|+|+..|++||+++.|-.+++||..+. ..+...+.+|...|.+++|-|-|. +|++++.|.+|
T Consensus 146 ----LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~ti 217 (406)
T KOG0295|consen 146 ----LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTI 217 (406)
T ss_pred ----hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccce
Confidence 8899999999999999999999999999999999873 334447789999999999999998 89999999999
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC-------
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------- 552 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~------- 552 (1135)
+.|++.+|-++++|.+|...|..+..+ .||.++++++.|.++++|-+.++++...+..|+.+|.+++|.|.
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~--~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~ 295 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVN--QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSIS 295 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEec--CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchh
Confidence 999999999999999999999999875 46699999999999999999999999999999999999999763
Q ss_pred --------CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 553 --------GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+.++.+++. |++|++||+.+|.++.++.+|.. .|..++|+|.|++|+++.+|+++++||++++++..
T Consensus 296 ~at~~~~~~~~l~s~Sr----DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 296 EATGSTNGGQVLGSGSR----DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred hccCCCCCccEEEeecc----cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 236666654 89999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++..|.+ .|+++.|+.+..++++|+-|.++++|.-
T Consensus 371 ~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 9998876 7999999999999999999999999964
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.4e-35 Score=288.87 Aligned_cols=339 Identities=18% Similarity=0.279 Sum_probs=290.6
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEe
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd 527 (1135)
.|..|++.|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+.+ |.+|+||..+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999764 49999999999999999
Q ss_pred CcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe
Q 001159 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
..++.....+......+.-+.|+|.+..|++|+. ||.+.+|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988877888999999999999999875 89999999999999999999887 899999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCC
Q 001159 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1135)
.||+|++|++.++.++..+....+ ....++.++.++..++.|+.++.+.+-+..+++ .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999999976553 367899999999999999999999888766651 1100000
Q ss_pred CCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecC
Q 001159 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1135)
Q Consensus 688 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~ 767 (1135)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 768 DSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 768 ~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
.+..+. ....+....|.++
T Consensus 274 ----------------~~~~l~---------------------------------------------~~~e~~~esve~~ 292 (399)
T KOG0296|consen 274 ----------------TVPELK---------------------------------------------PSQEELDESVESI 292 (399)
T ss_pred ----------------CCcccc---------------------------------------------ccchhhhhhhhhc
Confidence 000000 0000103344555
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCC
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 926 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 926 (1135)
.+|..-.+.|+|+ ||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||..
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCch
Confidence 6666777889999 9999999999877765555 888999999987 46889999999999999999999999999999
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.|.+++++|+.++++|+|.|++.+|+++.
T Consensus 370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999864
No 33
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-35 Score=278.16 Aligned_cols=296 Identities=17% Similarity=0.202 Sum_probs=246.0
Q ss_pred cccccceEEEEEEecCC-cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 769 SIAASKVVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
..|...| +.++..+.+ ..+++++.|..+.+|++... |.+.|..+.. +.| | ...|..+
T Consensus 12 ~gh~d~V-t~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--H-sH~v~dv 69 (315)
T KOG0279|consen 12 EGHTDWV-TALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--H-SHFVSDV 69 (315)
T ss_pred cCCCceE-EEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--c-ceEecce
Confidence 3488899 999998875 45667777999999998753 3344444443 555 7 8899999
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC-cC
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQ 925 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~ 925 (1135)
+.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++........... |.
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHR 148 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCc
Confidence 9999999999999 99999999999999999999999999999999 899999999999999999885544433332 37
Q ss_pred CCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEe
Q 001159 926 NRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYD 1002 (1135)
Q Consensus 926 ~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd 1002 (1135)
+-|+++.|+|+ ..+++++|.|++|++||+.+.+ ....+.||. ..++.+++||||...++ +.|+.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 88999999998 6799999999999999999876 445566676 78999999999999999 5799999999
Q ss_pred c-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCC
Q 001159 1003 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1003 ~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1135)
+ .++.+..+. |...|.+++|+|+.-+|+.+ .+..|+|||++++..+.++......+.. -......++++|++
T Consensus 221 L~~~k~lysl~----a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~-~~~~~~clslaws~- 293 (315)
T KOG0279|consen 221 LNEGKNLYSLE----AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSS-KAGDPICLSLAWSA- 293 (315)
T ss_pred ccCCceeEecc----CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccccc-ccCCcEEEEEEEcC-
Confidence 9 777765543 47899999999998777766 5566999999999999888866544422 23346778999998
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001159 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
||..|++|-.|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 899999999999999998753
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=272.79 Aligned_cols=295 Identities=14% Similarity=0.216 Sum_probs=251.1
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCC
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1135)
-+|++++.|.+||+|...++.+..++....+.|..+.+.|+++.|++++ ...|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 6899999999999999999999999999999999999999999999986 6679999999865 5899999988
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 590 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
.|.++.|..+|+.+++||+||+++|||++.......+.. ..+|+++..+|+..-|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999998655555543 358999999999999999999999999999766 2111
Q ss_pred hccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccc
Q 001159 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 749 (1135)
.+-..
T Consensus 161 ~liPe--------------------------------------------------------------------------- 165 (311)
T KOG0315|consen 161 ELIPE--------------------------------------------------------------------------- 165 (311)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 11000
Q ss_pred cccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcc
Q 001159 750 WRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 829 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1135)
....| .++.+.|||..++++...|...+|++..... .+...
T Consensus 166 ---------------------~~~~i-~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~ 206 (311)
T KOG0315|consen 166 ---------------------DDTSI-QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELE 206 (311)
T ss_pred ---------------------CCcce-eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccce
Confidence 11234 8999999999999999999999999865221 11111
Q ss_pred eeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc-cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 830 MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 830 ~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
....++. | .+.+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|..-+..++||. |+++|++|+.|+.+
T Consensus 207 P~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 207 PVHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTA 282 (311)
T ss_pred Ehhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCce
Confidence 1112333 7 89999999999999999998 999999999998 66777899999999999999 99999999999999
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEc
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++|++..++.++...+|.....|++..
T Consensus 283 rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999988888764
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-36 Score=301.49 Aligned_cols=343 Identities=20% Similarity=0.297 Sum_probs=275.9
Q ss_pred cCCCCCCCCCccccCCcchhHHHhhcccCCcceee-ecCCC-CCCcc-----ccCCC---cceeeEEee--cCCCCeeEE
Q 001159 285 KHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVS-FAGVA-HTPNV-----YSQDD---LTKTVVRTL--NQGSNVMSM 352 (1135)
Q Consensus 285 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~s~~g-~~~~~-----~~~d~---~~~~~~~~~--~h~~~V~~v 352 (1135)
+.++.|.++..++|.++--.+...+...-. .... .-|+. ..+.. |..|. .+.+.+++- +-+-+|..|
T Consensus 24 ~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v 102 (464)
T KOG0284|consen 24 KRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVV 102 (464)
T ss_pred ccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeE
Confidence 456666668889999886666555443332 1111 11111 11111 11111 112222221 256789999
Q ss_pred EEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
.|.|+|++ |++|+..|.+.+|+..+-. ...++..|..+|.++.||++|.++++|+.+|.|
T Consensus 103 ~WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 103 RWTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred EEcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 99999996 6789999999999964321 122467899999999999999999999999999
Q ss_pred EEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc
Q 001159 433 HLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511 (1135)
Q Consensus 433 ~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 511 (1135)
++|+..-... + .+.+|. ..|++++|+|.+. .|+||++||+|+|||....+....+.+|.-.|.++.|||..
T Consensus 163 KyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-- 234 (464)
T KOG0284|consen 163 KYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-- 234 (464)
T ss_pred Eecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--
Confidence 9999876432 2 344554 8999999999887 89999999999999999999989999999999999999987
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..|++||.|..|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.++++++|.. .|
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hkk-dv 309 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHKK-DV 309 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcchh-hh
Confidence 79999999999999999999999999999999999999999999999985 88999999999999999999998 89
Q ss_pred eEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 592 GVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 592 ~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999955 5667799999999999997777766643 344589999999999999999999999999753
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=289.65 Aligned_cols=295 Identities=18% Similarity=0.272 Sum_probs=266.1
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
.+.++.+.+. |.+.|.|+++.|.+. .+++|+.|++|.|||+.+|+...+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3556667777 999999999999987 799999999999999999988765 7899999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+++|+--.||++++.|+.|+.||+...+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999988777 6789999999999999888 8999999999999999999999999
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.||..+|.++.+.|.+ ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|+.|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998876 68999999999999999999999999999999999999999999998873 3599999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe---CC---CCCCCcceEEEcCCCCEE
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---AD---GGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l 647 (1135)
+..|..+..+.+|.. .|++++...|+ ++++|+++|.+.+||.+++-..+... .. .....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999988 89999988775 88999999999999999987665542 11 123468899999999999
Q ss_pred EEEECCCcEEEEEcCC
Q 001159 648 AVTTSDNGIKILANSD 663 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~ 663 (1135)
++|..|.+|++|.-..
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999997543
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-34 Score=293.04 Aligned_cols=281 Identities=18% Similarity=0.276 Sum_probs=254.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
....|++++|+.+|. +||+|+.||.++||+...+. +.+ +..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l-~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGNL-IST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCchh-hhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 457899999999998 89999999999999987543 322 678999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+++.|+++.+||..++.... .+.-|..+-.+|.|-.+.. |++++.|+.|+|+.+...+++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987654 4556888878899987765 89999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC---------EEEEEecCCCCCCeEEEEECC
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
|+|.+ .+|+++|.|++++||.+........+..|...|+.+.|+|+|. .+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98876 8999999999999999998888999999999999999999753 5777765 8899999999
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
.|.++.+|..|.. +|.+++|+|+|+++++|+.||.|.+|+.++++.++...... .|..+.|+.+|.+|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999997654 4899999999999999999999
Q ss_pred EEEEEcC
Q 001159 656 IKILANS 662 (1135)
Q Consensus 656 i~iwd~~ 662 (1135)
+++.|++
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9999874
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.4e-34 Score=280.14 Aligned_cols=329 Identities=14% Similarity=0.197 Sum_probs=276.2
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
|..|+..|.+++.+|+.+++|+|+.|....+|++.++.... .+.+|+..|+++.|+.||. +||||+.+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 56799999999999999999999999999999999998554 7889999999999999999 999999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
..++.....+...-..+.=+.|||.. ..|+.|+.||.+.+|.+.+......+.+|+.++++=.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999988887666778889999965 89999999999999999998888899999999999999999999999975
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CC---CC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GL---PA 634 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~---~~ 634 (1135)
+++|++||+.+++++..+.+..+....++.++..+..++.|+.++.+++-+..+++.+....... .. ..
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 89999999999999999987766678889999999999999999999999999998877765310 00 11
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 714 (1135)
|-.+.++..-.+.|+|+-||+|.|||....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 222223333344455555555555554322
Q ss_pred CCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEeccc
Q 001159 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASN 794 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~d 794 (1135)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc
Q 001159 795 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 873 (1135)
Q Consensus 795 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~ 873 (1135)
.. . .... | +..|+.+.|-+ ..+|+++. +|.|+.||.++|+
T Consensus 319 -----------~~----------------------R--~~c~--h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 319 -----------TL----------------------R--HICE--H-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred -----------hh----------------------h--eecc--C-CCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 00 0 0001 5 77788888888 66777776 9999999999999
Q ss_pred EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 874 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 874 ~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
++.++.+|...|.+++++| +.++++|++.|++.+||+..
T Consensus 360 l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999 89999999999999999864
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=277.20 Aligned_cols=524 Identities=14% Similarity=0.173 Sum_probs=377.8
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--------cEEEEEc
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--------MIKVWDV 484 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--------~i~iwd~ 484 (1135)
.+-+-|.|..+.... +.+.+++.+...+. .+.+|...|.|++.+||-- .+++|-.-| .+++||.
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 456778887665432 34566777553221 4669999999999999866 677664433 5999998
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEE--EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE-EEEec
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST--AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL-FSCGT 561 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~ 561 (1135)
.+-..++.+......|.+++|++.+.|.++... +.+..+.+||...+.........+..+....|.|.+..+ ++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888777889999999999887777665 345678999999887777777777889999999976654 4554
Q ss_pred CCCCCCeEEEEECCCCeEEEE---eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceE
Q 001159 562 SKEGESHLVEWNESEGAIKRT---YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~---~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
.+.+..|+.+.+.+.+. |..+....|.|++|.++|. +++|..+|.|.||+..+.+..+....| ...|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEEE
Confidence 88999999998877654 5555556799999999875 789999999999999887777666655 4489999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCC
Q 001159 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1135)
Q Consensus 639 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 718 (1135)
..-.+|.+|- |+.|..|..||-. - +.++..+-..
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~~-y-~k~r~~elPe------------------------------------------- 327 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDDN-Y-RKLRETELPE------------------------------------------- 327 (626)
T ss_pred EEecCccEee-cCccceEEecccc-c-cccccccCch-------------------------------------------
Confidence 9999997665 9999999999922 1 1111111000
Q ss_pred CccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceee
Q 001159 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHK 798 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~ 798 (1135)
..+.| ..++ +.+.-|++|+..+.|.
T Consensus 328 ----------------------------------------------------~~G~i-Rtv~--e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 328 ----------------------------------------------------QFGPI-RTVA--EGKGDILVGTTRNFIL 352 (626)
T ss_pred ----------------------------------------------------hcCCe-eEEe--cCCCcEEEeeccceEE
Confidence 00111 1111 1111155555544443
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM 877 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 877 (1135)
.=. .+++..+. ..+ | ......++.+|+...+++++ |+.+++|+ ..++.-+
T Consensus 353 ~Gt----------------------~~~~f~~~--v~g--h-~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 353 QGT----------------------LENGFTLT--VQG--H-GDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred Eee----------------------ecCCceEE--EEe--c-ccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 211 11221111 122 6 77899999999999999998 99999999 4445444
Q ss_pred EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 878 ~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
.. -..++.|++|+| .| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.++.|+.|+||.++..
T Consensus 404 ~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 404 KI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 33 467899999999 67 999999999999999999776665554 889999999999999999999999999999876
Q ss_pred ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecC-Cceeec---------------cCCCCCCCCC
Q 001159 958 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECSRS---------------WSPKDALPAP 1020 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~-~~~~~~---------------~~~~~~h~~~ 1020 (1135)
.....+ +....+ .+++.+.||+|++++.+ +.|-.|-.|... ...+.. ......|...
T Consensus 480 g~~y~r-~~k~~g-----s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 480 GRKYSR-VGKCSG-----SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred CcEEEE-eeeecC-----ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 643322 222222 57999999999999999 789999999542 111111 0112345667
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
|..++-|.+++++|+|...|.|++|...--+... ..|++ ..++....+++|.-.| ..+++.+.|.+|..|++
T Consensus 554 i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA--~~he~-----~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 554 INAVARSHCEKLLASGDDFGKVHLFSYPCSSPRA--PSHEY-----GGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHHhhhhhhhhhhhccccCceEEEEccccCCCcc--cceee-----ccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 7888888899999999999999999876433322 12222 2445667789998866 46666569999999986
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=267.03 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=239.4
Q ss_pred eEEeec-CCCCeeEEEEecC-CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 339 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.++.+. |.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 345555 8899999999999 76 899999999999999885322110 11123479999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eeeeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 493 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 493 (1135)
+|.|++||+|+.|.++.||.-..+ .+.....+.||...|.|++|+++|. +||+|++|+.|-||.+..+ .+...+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999987754 4556778999999999999999999 9999999999999998743 577889
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC---CCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
++|...|..+.|||.. .+|+++|.|++|++|+-.. -.+...+.+|...|.+++|++.|..|++++. |++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999988 7999999999999997663 2357788999999999999999999999974 89999
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc------eEEEEeCCCCCCCcceEEEcCC-
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN------MLTTVDADGGLPASPRLRFNKE- 643 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~- 643 (1135)
||-.. ..+...+...+..+.|. ...|++++.|+.|+++.-...- .+... .+.|...|+++.|+|.
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCC
Confidence 99865 33444444478889998 5689999999999999766421 11111 2233448999999994
Q ss_pred CCEEEEEECCCcEEEEEcC
Q 001159 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~ 662 (1135)
..+|+++++||.+++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999864
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=271.60 Aligned_cols=285 Identities=18% Similarity=0.247 Sum_probs=250.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.|++.|..+.|+|+|. ++|+|+.|..|.+|++.....- ...+++|++.|..+.|.+|++.|
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccCCCEE
Confidence 3899999999999998 8999999999999997643221 11267999999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++++.|.+++.||+++|+..+ .+++|...|+++.-+.-|.. ++.|++.|+++++||+++..+++++. ...+++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998776 67889999999997666776 78999999999999999999888885 56789999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC----CeE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (1135)
.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+. ..+
T Consensus 181 ~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 997655 78999999999999999999999999999999999999999999999876 88999999974 345
Q ss_pred EEEeecccCC---ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 580 ~~~~~~~~~~---~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
+..+.++... ....++|+|++..+-+|+.|..+++||......+..+.+|.+ .|++++|+|....|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7777776431 345688999999999999999999999999999999988755 89999999999999999999998
Q ss_pred EEEE
Q 001159 657 KILA 660 (1135)
Q Consensus 657 ~iwd 660 (1135)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 42
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=276.39 Aligned_cols=549 Identities=12% Similarity=0.132 Sum_probs=387.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
-..+|.++|||.+.+.||.+-.||.|.||++..+-... ..+.++. ..|.+++|++.+ .|.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 34579999999999999999999999999999864333 3555554 579999999655 48899999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee--EecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+++....+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+.-..+++.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999977 789999999988777776665544 34445679999999999999999986
Q ss_pred CCCCeEEEEECCCCeEEEEeec-----c--cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 564 EGESHLVEWNESEGAIKRTYSG-----F--RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~-----~--~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
||.|++||..++..+...+. . ....|.++.|-.+ ..|++|..-|+|.+||...+.+++....|.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 89999999999887762221 1 1224677777755 5799999999999999999999999988755 799
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 716 (1135)
+++..+++.++++++.|+.|.-+...+.... .+.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999988877665221 000
Q ss_pred CCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccce
Q 001159 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAV 796 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~ 796 (1135)
......|...+ .+++..++ .+++++.|..
T Consensus 284 ------------------------------------------------~~~r~~h~hdv-rs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 284 ------------------------------------------------NSRRDLHAHDV-RSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred ------------------------------------------------eccccCCcccc-eeeeeecc--eEEecceeeE
Confidence 01112266667 88888887 6889999988
Q ss_pred eeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCcc---
Q 001159 797 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK--- 873 (1135)
Q Consensus 797 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~--- 873 (1135)
+.+-.....+. .+ ..+.... . ... -+...|..++++.-.+..+.+|.+.+..
T Consensus 313 l~i~~s~~~~~--------------~~----h~~~~~~----p-~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g 367 (691)
T KOG2048|consen 313 LAICSSREFKN--------------MD----HRQKNLF----P-ASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQG 367 (691)
T ss_pred EEEccccccCc--------------hh----hhccccc----c-ccc--eeecCccceEEEEeccccccceeccCccccc
Confidence 87743221000 00 0000000 0 111 2333455555555557888899887652
Q ss_pred ------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE-----ecCcCCCeEEEEEcCCCCeEEE
Q 001159 874 ------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVS 942 (1135)
Q Consensus 874 ------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~i~~l~~s~d~~~l~s 942 (1135)
+.+-.......|.|.+.|| +|++||.+.- ..++||.+.....+.. ...-.-....+.|+-|+..++.
T Consensus 368 ~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~ 445 (691)
T KOG2048|consen 368 EYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFL 445 (691)
T ss_pred ccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEE
Confidence 1222223445799999999 9999998764 4688888875322222 1222235678899999988888
Q ss_pred Ec-CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCC
Q 001159 943 SG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAP 1020 (1135)
Q Consensus 943 ~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~ 1020 (1135)
++ .+..+.+.+.++........+... .....++.++.|+||+|+|+ +..+.|.+|+++......+.... ...
T Consensus 446 ~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~ 519 (691)
T KOG2048|consen 446 VSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NID 519 (691)
T ss_pred EecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Ccc
Confidence 88 667788888776553222222111 22368999999999999999 78999999999555554444322 578
Q ss_pred EEEEEEee-CCCEEEEEeCCCeEEEEECCCceeeeeeCCce--eccccccCCCCccEEEEecCCCCCEEEEEecCCcEEE
Q 001159 1021 ISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1021 i~~~~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~ 1097 (1135)
|++++|+| +-..|+.+..|+.|.-||++..+ +.++.... .+|....+-......+.|+|.+...++. -+.+-+++
T Consensus 520 vTa~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~-~~a~w~~~ 597 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIV-YDAHWSCL 597 (691)
T ss_pred eeeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEE-EcCcEEEE
Confidence 99999995 55678889999999999995433 32222111 1111111222334467777766555554 33355666
Q ss_pred EecC
Q 001159 1098 VEPS 1101 (1135)
Q Consensus 1098 W~~~ 1101 (1135)
.|..
T Consensus 598 id~~ 601 (691)
T KOG2048|consen 598 IDFS 601 (691)
T ss_pred EecC
Confidence 6654
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=292.69 Aligned_cols=386 Identities=17% Similarity=0.254 Sum_probs=291.5
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+...+..|..++|+|...+++++-..|.|++||..-+..+. .+..|.++|..++|+|++. +++|||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44567789999999999999999999999999999988777 7789999999999999999 999999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
..+.+++.++.||-+.|..+.||+.. .+|+++|.|.+|+||++.+..++..+++|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999877 79999999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
|.+|++||+..-+....-.+.-........ ++.=+.|+.|-.| ...+.+|. ..|+-++|+|.
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~----~~~dLfg~~DaVV----------K~VLEGHD--RGVNwaAfhpT 217 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQ----GNSDLFGQTDAVV----------KHVLEGHD--RGVNWAAFHPT 217 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccc----cchhhcCCcCeee----------eeeecccc--cccceEEecCC
Confidence 889999998643322211110000010000 0000122223222 23455554 48999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
-.++++|++|..|++|.....
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 999999999999999987543
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
+.|++++. .+|.+.| .++.|+|....+++.+.|++|++||+.
T Consensus 239 ------------------------KaWEvDtc-------------rgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 239 ------------------------KAWEVDTC-------------RGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ------------------------cceeehhh-------------hcccCCc-ceEEecCccceeEecCCCccEEEEecc
Confidence 12333321 1377888 999999999999999999999999875
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCC
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 883 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~ 883 (1135)
... .+...-.. .+..+.++.+|..+++|.|-|+-+.||.++.-..
T Consensus 281 kRt----------------------~v~tfrre----ndRFW~laahP~lNLfAAgHDsGm~VFkleRErp--------- 325 (1202)
T KOG0292|consen 281 KRT----------------------SVQTFRRE----NDRFWILAAHPELNLFAAGHDSGMIVFKLERERP--------- 325 (1202)
T ss_pred ccc----------------------ceeeeecc----CCeEEEEEecCCcceeeeecCCceEEEEEcccCc---------
Confidence 321 11111112 6789999999999999999998888888764322
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEccccee--eEEecCcC---CCeEEEEEcCCCCe-EEEEcCC-CcEEEEeCC
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQ---NRITGLAFSPTLNA-LVSSGAD-AQLCMWSID 955 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~---~~i~~l~~s~d~~~-l~s~~~D-~~i~iwd~~ 955 (1135)
+.+.+ ++.++. .- |..|+-+|+.+.+- +..++... .++.++.++|.... |++...| +..-++.+.
T Consensus 326 ---a~~v~--~n~LfY-vk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 326 ---AYAVN--GNGLFY-VK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred ---eEEEc--CCEEEE-Ec-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 23333 333333 33 89999999998543 34454332 57889999997654 4443333 444445443
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=279.04 Aligned_cols=305 Identities=16% Similarity=0.243 Sum_probs=266.4
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
...+.+.+|..+|+.+.|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4556778899999999999977 78899999999999999999999999999999999999999999999985 66
Q ss_pred eEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
.+.+||..+ .++++...+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|.. .|..+..+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 699999987 567778888877 899999999999999999999999999999999999998866 7999999999999
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+++++.|.++++|-..++ ++...+..|.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~hE--------------------------------------------------- 277 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELREHE--------------------------------------------------- 277 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhccc---------------------------------------------------
Confidence 999999999999999888 5555555543
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
..| .+++|.|...+= . |.
T Consensus 278 ----------------------------------------------h~v-Eci~wap~~~~~--~-----i~-------- 295 (406)
T KOG0295|consen 278 ----------------------------------------------HPV-ECIAWAPESSYP--S-----IS-------- 295 (406)
T ss_pred ----------------------------------------------cce-EEEEecccccCc--c-----hh--------
Confidence 333 677776644310 0 00
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCe
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA 885 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v 885 (1135)
+ .. . ... .+.++.+++ |++|++||+.++.++.++.+|.+.|
T Consensus 296 ----------------~----------at---~-~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 296 ----------------E----------AT---G-STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred ----------------h----------cc---C-CCC--------CccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence 0 00 0 111 567899999 9999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
..++|+| +|++|+++.+|+++++||+.++++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 338 r~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999963
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=277.12 Aligned_cols=247 Identities=16% Similarity=0.282 Sum_probs=230.1
Q ss_pred hhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.++.+|.++|.|+++.|.+.++++|+.|++|+|||+.++.... ++.||...|..+++|+--. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 3578999999999999999999999999999999999986544 7889999999999999888 8999999999999
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
||++..+.++.+.||-..|.|++.+|.- +.|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 9999999999999999999999999987 79999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.+|.. -|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeeec
Confidence 89999999999999999998887 89999999999999999877 599999999999988877654 68999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001159 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|+ ++++|+++|.+..||.+++
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC
Confidence 887 7888999999999999988
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=269.02 Aligned_cols=254 Identities=16% Similarity=0.277 Sum_probs=221.4
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
+.+.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|++.|..+.|.+|+. .|+++|.|++|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence 445688999999999999999999999999999999977543 33447789999999999999999 89999999999
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
+.||+++|++++.+++|..-|+++.....+ -.++.+++.|+++++||+++......+. ....++++.|..++..+++|
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeec
Confidence 999999999999999999999999843322 2678899999999999999877766553 34578999999999999999
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC----CceEEEEeCCCCCC--
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP-- 633 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~-- 633 (1135)
+- |+.|++||++.+.....+.||.+ .|+.+..+++|.++.+-+.|.++++||++. ..++..+.++.+.-
T Consensus 193 gI----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 193 GI----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred cc----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence 87 77899999999999999999999 999999999999999999999999999875 34577777664432
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
....++|+|++..+.+|+.|..+.+||....
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccc
Confidence 2357899999999999999999999998654
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=313.61 Aligned_cols=286 Identities=20% Similarity=0.357 Sum_probs=252.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc--ccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+...|.++.|||+|+ .+++++.++.+++|+..+++ .... +.+|...|.+++|+||+++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999999 58899999999999997665 2221 4789999999999999999
Q ss_pred EEEEeCCCeEEEEEeC-CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 423 LGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
+++++.|++|+|||+. .+..++ .+.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 334444 7889999999999999997 899999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCC--cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+++|++++ .+|++++.|+.|++||+.++. +...+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99998755 899999999999999999988 3455555544 5999999999999999975 789999999999
Q ss_pred eEEEEeecccCC--ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE--CC
Q 001159 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1135)
Q Consensus 578 ~~~~~~~~~~~~--~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d 653 (1135)
..+..+.+|... .+.+...++.+.++++|+.|+.|++|++.++..+..+.+|. ...+..+.+++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34455567889999999999999999999999999998885 44789999999999999998 68
Q ss_pred CcEEEEEcC
Q 001159 654 NGIKILANS 662 (1135)
Q Consensus 654 g~i~iwd~~ 662 (1135)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
No 48
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-33 Score=303.52 Aligned_cols=247 Identities=17% Similarity=0.345 Sum_probs=228.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC--------c--------------------eeeeeEeecccCCEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--------E--------------------LRQHLEIDAHVGGVND 458 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~--------~--------------------~~~~~~l~~h~~~v~~ 458 (1135)
....++|..||+|+++||.|..|..|++|.+...+ . -....++-||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34569999999999999999999999999987311 0 0122357899999999
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec
Q 001159 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 459 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 538 (1135)
+.|+|+.+ +|++|+.|+++++|.+.+..++..++||..||+.+.|+|.+ -+++|+|.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999999865 999999999999999999999999999
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
+|-+.|.|+.|+|+..++++|+. |.++++||..+|..++.|.||.+ +|.+++|+|+|++|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999986 88999999999999999999998 99999999999999999999999999999
Q ss_pred CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++++..+..| .+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 458999999999999999999999999998654
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=273.58 Aligned_cols=292 Identities=17% Similarity=0.280 Sum_probs=238.4
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
++..|.+.|.-+.||++|++||+++.|.+..||++.....++..+++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 4778999999999999999999999999999999988777777789999999999999999999 89999999999999
Q ss_pred EcCCCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 483 DVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 483 d~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
|+.+|.+.+.+. +|...+.+++|.|++ ..+++|+.|++|..||++.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDg------------------------------- 343 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDG------------------------------- 343 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCc-------------------------------
Confidence 999999887774 245667777777754 6677777777777776541
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
..+...++-....|.++++++||+++++.+.|..|++++..+......+..+ .+|++..+|
T Consensus 344 ----------------n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS 404 (519)
T KOG0293|consen 344 ----------------NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSIS 404 (519)
T ss_pred ----------------chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEc
Confidence 1122222333336888999999999999999999999999887666555433 368999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcc
Q 001159 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
.|++++++.-.+..+++||++.. .+++...||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999865 566655554311
Q ss_pred ccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEE
Q 001159 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWK 801 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~ 801 (1135)
.+++-
T Consensus 440 ----------------------------------------------------------------~fiIr----------- 444 (519)
T KOG0293|consen 440 ----------------------------------------------------------------HFIIR----------- 444 (519)
T ss_pred ----------------------------------------------------------------ceEEE-----------
Confidence 00111
Q ss_pred eccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee-cCCCEEEEEe-CCeEEEEECCCccEEEEEe
Q 001159 802 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS-KNDSYVMSAS-GGKVSLFNMMTFKVMTMFM 879 (1135)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s-~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 879 (1135)
-||- .+.+++|+|+ |++|+||+..+++++.++.
T Consensus 445 ---------------------------------------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 445 ---------------------------------------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred ---------------------------------------------eccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 1111 1567999999 9999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 880 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 880 ~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
||...|+|++|+|.+..++|+|++||+||||...
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999999999999999999999999999999765
No 50
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.7e-29 Score=265.82 Aligned_cols=503 Identities=15% Similarity=0.181 Sum_probs=361.3
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCC-CCCeeEEEeeccCCccEEEEEEcCCeEEEEeC
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~ 528 (1135)
--..+|.++||+.+.+ .||.+-.||.|-+|++..+= +...+.++ +..|.+++|.+ +..|++.+.+|.|.-||+
T Consensus 23 ~~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEec
Confidence 3456799999999998 68999999999999998753 33455555 46899999983 368999999999999999
Q ss_pred cCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc-cCCceeEEEecCCCCEEEEEe
Q 001159 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 529 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
.+.+....+...++.|++++.+|.+..++.++. +|.+..++...+++.....-. ....+.+++|+|++..+++|+
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999999999999999999999999998874 778888888877765433222 223799999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEe-----CCC-CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccC
Q 001159 608 DEFQIKFWDMDNMNMLTTVD-----ADG-GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
.||.|++||+.++..+.... ... ...-|+++.|-.++ .|++|...|+|.+||...+ .+.+.+..
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~-------- 243 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSC-------- 243 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhh--------
Confidence 99999999999998777332 111 22346677777555 7899999999999999888 55555443
Q ss_pred CCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccce
Q 001159 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~ 761 (1135)
T Consensus 244 -------------------------------------------------------------------------------- 243 (691)
T KOG2048|consen 244 -------------------------------------------------------------------------------- 243 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCC
Q 001159 762 KALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 841 (1135)
|...| .+++.++++.++++++-|+.+..|...+.... |-.. .....| .
T Consensus 244 ---------h~adV-l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~--------~~r~~h-~ 291 (691)
T KOG2048|consen 244 ---------HDADV-LALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVIN--------SRRDLH-A 291 (691)
T ss_pred ---------hhcce-eEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeee--------ccccCC-c
Confidence 33445 89999999999999999999988866543210 1111 111226 8
Q ss_pred CceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEE-EEEecCCCcEEEEEeCCCcEEEEEcccce--
Q 001159 842 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDE-- 916 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~-l~~sp~~~~~lasg~~dg~v~iwd~~~~~-- 916 (1135)
..+.+++..++ .+++|+ |.++.+-.....+...... +. ..-.+ +...| .++|..--.+..+.+|.+-+.-
T Consensus 292 hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~-~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~ 366 (691)
T KOG2048|consen 292 HDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQ-KNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQ 366 (691)
T ss_pred ccceeeeeecc--eEEecceeeEEEEccccccCchhhhc-cccccccceeecCc--cceEEEEeccccccceeccCcccc
Confidence 89999999887 777777 8888776654422211111 11 11111 22223 3455555557778888776541
Q ss_pred -------eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 917 -------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 917 -------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
+.+-...-...|.+-+.||||++++.+.- ...+||.++....++...+....... ...+.+.|+-|+..
T Consensus 367 g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k 442 (691)
T KOG2048|consen 367 GEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNK 442 (691)
T ss_pred cccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCce
Confidence 11112223345999999999999987653 34788888765444333333322221 46688999999887
Q ss_pred EEE-E-ecCeEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccc
Q 001159 990 LLV-V-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1064 (1135)
Q Consensus 990 l~~-~-~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1064 (1135)
++. + ....+.+.+. +.+.+..+... +--..|..++.|+||+|||+.+.+|.|.+|++++++.......-
T Consensus 443 ~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl----- 516 (691)
T KOG2048|consen 443 LFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL----- 516 (691)
T ss_pred EEEEecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc-----
Confidence 777 4 5677777777 33333333322 23568999999999999999999999999999998765543211
Q ss_pred cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1065 YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
....+++.++|.+-+.|+.+..|+.++-+|++..+
T Consensus 517 -----n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 517 -----NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred -----CcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 14566888887777899999999999999995433
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-32 Score=250.89 Aligned_cols=286 Identities=14% Similarity=0.223 Sum_probs=246.4
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. +.++|.++.|+-||+ +..+++.|.+|++|+...|..+++ +.+|...|..++.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~s 68 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAALS 68 (307)
T ss_pred hceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeecccc
Confidence 445555 889999999999999 566777899999999999998876 78999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC--CeeeeeecC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTFEG 495 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~ 495 (1135)
.|+..+++|+.|..+.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ .++++.+..
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred ccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhh
Confidence 999999999999999999999998877 7889999999999999988 999999999999999875 467888888
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
....|.++.... ..|++||.||++|.||++.+.....+ -+.+|++++|++|++..++++. ++++++.|-.
T Consensus 144 a~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~ 213 (307)
T KOG0316|consen 144 AKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLDKE 213 (307)
T ss_pred hcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeecccc
Confidence 888999998743 67999999999999999977655433 4568999999999999998876 8899999999
Q ss_pred CCeEEEEeecccCCce-eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 576 EGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v-~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
+|+++..+++|..... ..++++.....+++|++||.|++||+.....+..+..+... .|.+++++|.-..++++...
T Consensus 214 tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~~~- 291 (307)
T KOG0316|consen 214 TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITATGH- 291 (307)
T ss_pred hhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEecCC-
Confidence 9999999999987432 24567777789999999999999999999999998876552 47899999977777776554
Q ss_pred cEEEEEc
Q 001159 655 GIKILAN 661 (1135)
Q Consensus 655 ~i~iwd~ 661 (1135)
.+..|--
T Consensus 292 ~~~~~~~ 298 (307)
T KOG0316|consen 292 GDLFWYQ 298 (307)
T ss_pred ceeceee
Confidence 4556643
No 52
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-30 Score=273.51 Aligned_cols=645 Identities=16% Similarity=0.195 Sum_probs=362.2
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
+..+. |++.|+.+.|||-...|||+|+.|..|+||.+..|-... ..-+..++.+..-.|-|+.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeeccc
Confidence 44444 999999999999776799999999999999998543211 1122333555667899999999
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHE 497 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~ 497 (1135)
...-|...+..|.++|||+.+++.+. ++.+|...|.++.|+.||. ++++.+.|+.|+|||.+. ++.++..++|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 88877777788999999999987655 7889999999999999999 999999999999999874 67778888887
Q ss_pred CC-eeEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCce-eEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 498 AP-VYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSR-VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~-v~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~-~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+. -..+.|..+ -..|++.+.+ ..|++||.+..... ..+... ...|.---|.||.++|+.++ .++.++.
T Consensus 214 ~~rdsRv~w~Gn--~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l~ 288 (1012)
T KOG1445|consen 214 GMRDSRVLWAGN--WERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKLF 288 (1012)
T ss_pred cchhheeeeccc--hhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceEE
Confidence 64 334556433 2467766654 56999998875543 233222 22455567899999998876 3677888
Q ss_pred EEECCCCeEE--EEeecccCCceeEEEecCCCCEEEEEeC-CC-------------------------------------
Q 001159 571 EWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF------------------------------------- 610 (1135)
Q Consensus 571 ~wd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg------------------------------------- 610 (1135)
.+.+...+.. ..+...-.......++-|....-+..++ +.
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 8887654321 1111000000011111111110000000 00
Q ss_pred --eEEEEECCCCceEEEEe------CCCC----------------CCCcceEEEcCCCCEEEEEECCCcEEEEEcC----
Q 001159 611 --QIKFWDMDNMNMLTTVD------ADGG----------------LPASPRLRFNKEGSLLAVTTSDNGIKILANS---- 662 (1135)
Q Consensus 611 --~i~iwd~~~~~~~~~~~------~~~~----------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---- 662 (1135)
.-.-|=-.+.+.++... .|+. ...|......|...-=.....++ +=|..
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~---~Pd~~~qpa 445 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNN---VPDVQEQPA 445 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccC---CCccccCCC
Confidence 00001111111111111 0000 00000000000000000000000 00000
Q ss_pred --CCchhhhhc---------------------cccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCC-
Q 001159 663 --DGVRLLRML---------------------EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP- 718 (1135)
Q Consensus 663 --~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 718 (1135)
.+ ...+.+ ++....+......+..-.++.-.+ ....+...-.+.|.-.+ ..|
T Consensus 446 V~~~-~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~p--lt~~~s~~s~~~P~~~k-svPe 521 (1012)
T KOG1445|consen 446 VPKK-EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTP--LTDSVSTPSVVGPAFGK-SVPE 521 (1012)
T ss_pred cCcc-hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcc--cccccccccccCccccc-cCCC
Confidence 00 000000 000000000000000000000000 00000000001111000 001
Q ss_pred ---CccccccccCCCCcccccccccccccccccccccCCcCCccc------ee--EeecCCcccccceEEEEEEecCCcc
Q 001159 719 ---AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ------IK--ALRLPDSIAASKVVVRLIYTNSGLS 787 (1135)
Q Consensus 719 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~------~~--~~~~~~~~~~~~i~~~~~~s~dg~~ 787 (1135)
......+...+.++....-.-..+--|.+.-+.-..+....+ ++ ...+++ .+--|+.+..+
T Consensus 522 ~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg--------EsnGfcan~~r 593 (1012)
T KOG1445|consen 522 QPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG--------ESNGFCANNKR 593 (1012)
T ss_pred CCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC--------ccCceeeccce
Confidence 111111111111111111000001112222222111111110 01 111122 22234445554
Q ss_pred eeE--ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEEEEEe-CCe
Q 001159 788 LLA--LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGK 863 (1135)
Q Consensus 788 l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~la~~~-dg~ 863 (1135)
+++ .+..|.|-||++......|++-. .+.-. ...|+.+.|.| |...||++. ||.
T Consensus 594 vAVPL~g~gG~iai~el~~PGrLPDgv~---------------------p~l~N-gt~vtDl~WdPFD~~rLAVa~ddg~ 651 (1012)
T KOG1445|consen 594 VAVPLAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFN-GTLVTDLHWDPFDDERLAVATDDGQ 651 (1012)
T ss_pred EEEEecCCCceEEEEEcCCCCCCCcccc---------------------ccccc-CceeeecccCCCChHHeeecccCce
Confidence 443 35578999999876555444432 22213 77899999999 778888888 899
Q ss_pred EEEEECCCc-------cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 864 VSLFNMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 864 i~vwd~~~~-------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
|++|.+..+ .....+.+|...|+++.|+|--...||+++.|-+|++||+.+++....|.+|.+.|.+++||||
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD 731 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence 999999754 3346678899999999999977889999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-E----ecCeEEEEec-C--Ccee
Q 001159 937 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V----HESQISVYDS-K--LECS 1008 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~----~d~~v~vwd~-~--~~~~ 1008 (1135)
|+.+|+++.||+|++|+..+++. .+..-.+... ..-..+.|..||+++++ + +.++|.+||. + +..+
T Consensus 732 Gr~~AtVcKDg~~rVy~Prs~e~----pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 732 GRRIATVCKDGTLRVYEPRSREQ----PVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred CcceeeeecCceEEEeCCCCCCC----ccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 99999999999999999988763 2222222221 34467889999999888 4 3567999998 2 2222
Q ss_pred eccCCCCCCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEECCCcee
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~-~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
....... .-.+.--.+.+|.. ++++|-.|..|.+|++-....
T Consensus 806 ~t~~lDv--aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 806 YTQVLDV--APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred eeeeecc--cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 2111100 11122223456655 467888999999999875544
No 53
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6e-33 Score=277.94 Aligned_cols=241 Identities=17% Similarity=0.260 Sum_probs=216.3
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
-+..|..|.|.|+|+.|++|+..|...+|+..+- .-...+++|..+|.++.|++++. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---nFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---NFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee---eHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 4567999999999999999999999999997542 22225678999999999999999 899999999999999654
Q ss_pred CeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001159 487 GRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 487 ~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
. .++.+.+|. ..|.+++|+|.+ ..++++|.||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---- 242 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---- 242 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence 4 345555554 899999999965 79999999999999999999998999999999999999999999999974
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 644 (1135)
|..|++||.++|.++.++.+|.. .|..+.|++++++|+++|.|..++++|+++.+.+.++++|.. .|.++.|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccc
Confidence 66999999999999999999998 999999999999999999999999999999999999988755 799999999 67
Q ss_pred CEEEEEECCCcEEEEEcC
Q 001159 645 SLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~~ 662 (1135)
.++.+|+.||.|..|.+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cceeeccCCCceEEEecc
Confidence 799999999999999886
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=302.83 Aligned_cols=291 Identities=26% Similarity=0.432 Sum_probs=245.3
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
+...+ .++.|+++|+.+++++.++.+++|+...... .... .+.+ | ...|..++|+
T Consensus 158 ~~~sv-~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l~~--h-~~~v~~~~fs 212 (456)
T KOG0266|consen 158 ECPSV-TCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-ELSG--H-TRGVSDVAFS 212 (456)
T ss_pred ccCce-EEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cccc--c-ccceeeeEEC
Confidence 35666 9999999999999999999999997632110 0111 1223 7 9999999999
Q ss_pred cCCCEEEEEe-CCeEEEEEC-CCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCe
Q 001159 851 KNDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 928 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 928 (1135)
||++++++++ |++|+|||+ ..+.+++++++|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 9999999999 899999999 66699999999999999999999 67999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEec-CCc
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLE 1006 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~~~ 1006 (1135)
++++|++|+.+|++++.|+.|++||+.++... ++....++.... .++.++|+|++++++++ .|+.+++||+ .+.
T Consensus 292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 99999999999999999999999999998844 344555665544 78999999999999995 6779999999 688
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
++..+..+..-...+.+..++++++++++|+.|+.|++|++.++..++.+..|. ......+.++| ..+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---------~~~~~~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---------KAAVSDLSSHP-TENLI 437 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---------CCceeccccCC-CcCee
Confidence 887776553211255666778899999999999999999999999999888772 13345677888 67899
Q ss_pred EEEe--cCCcEEEEecC
Q 001159 1087 ALGM--SDGAVHVVEPS 1101 (1135)
Q Consensus 1087 ~sg~--~dg~v~~W~~~ 1101 (1135)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9988 78999999864
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.8e-33 Score=270.80 Aligned_cols=272 Identities=22% Similarity=0.330 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.|+.+..+ .+++|..|++|+|||.++..++. ++.||++.|.|+.| |.+.|++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEEe
Confidence 457999998643 47899999999999998877655 38899999999999 6779999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe---eeeeecCCCCCeeE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~ 502 (1135)
|+.|.+|++||+++++++. ++-+|...|..+.|+.. +++|++.|.+|.+||+.... +.+.+.||...|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999998877 77789999999999843 89999999999999998764 34567899999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.|+. ++++++|.|.+|++|++.+.+.+.++.+|...|.|+.+ .++++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 98842 79999999999999999999999999999999999887 4788888875 88999999999999999
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE---------EEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+.||.. -|.++.|. .+.+++|+.||+|++||+..+... .++. .+.+.|..+.|. ...+++++.|
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCC
Confidence 999998 89999996 578999999999999999875432 2222 233467777774 5578899999
Q ss_pred CcEEEEEcCCCc
Q 001159 654 NGIKILANSDGV 665 (1135)
Q Consensus 654 g~i~iwd~~~~~ 665 (1135)
.+|.|||..++.
T Consensus 469 dtILiWdFl~~~ 480 (499)
T KOG0281|consen 469 DTILIWDFLNGP 480 (499)
T ss_pred CeEEEEEcCCCC
Confidence 999999998873
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-30 Score=285.79 Aligned_cols=282 Identities=24% Similarity=0.409 Sum_probs=252.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|.++|++++|+|+++ ++++|+.+|.|.+|++.+++.... +..|...+.++.|+|++++|+
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999998 688898999999999988764332 457888999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+++.||.|++||+.+++... .+..|...|.++.|++++. ++++++.|+.|++||+.+++....+..|...|.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999875544 5678998999999999977 788888899999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|.+ .++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|++||.++++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 99874 78888888999999999988888888888889999999999999998874 7889999999999998887
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.+.. .+.++.|++++.++++++.||.|++|++.+++....+..+. ..+.+++|++++.++++++.||.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7776 89999999998888888889999999999988888887554 3799999999999999999999999996
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=282.17 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=250.7
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
.|...+.++. |+..|+++.|.|-.-+||++|+.|+.|+||++.. +.++++ +.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3667788888 9999999999994335999999999999999987 666654 789999999
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+++|+++|..+.+++.|+.|++||+++|.+.. .+. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 3446899999999955 789999999999999999999999
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+..|-+.|..+.|.+.+ .++++.+.|+++++|+.+..-.+.. ...+.....++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999998755 8999999999999999987766543 3334456788999999999998765 778999
Q ss_pred EECCCC---eEEEEeecccCCc-eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCE
Q 001159 572 WNESEG---AIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1135)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~~-v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 646 (1135)
+..... ...+.|.+|.... -..+.|||||.+|++|+.||.+.+||.++-+++..+..|.. .+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 886532 2345677776432 34589999999999999999999999999999999998854 789999999 5678
Q ss_pred EEEEECCCcEEEEE
Q 001159 647 LAVTTSDNGIKILA 660 (1135)
Q Consensus 647 l~~~~~dg~i~iwd 660 (1135)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-32 Score=280.69 Aligned_cols=291 Identities=19% Similarity=0.351 Sum_probs=249.4
Q ss_pred eeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 446 HLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
...+.+|...|+++.|.| .+. +|++++.|+.|+||++.. ++++++|.+|..+|.+++|+..+ ..++++|.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g--~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG--TSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC--Ceeeeeecceee
Confidence 447889999999999999 565 899999999999999986 99999999999999999997654 899999999999
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCE
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 602 (1135)
++||++++++...+.. +..++|+.|.|++ +.+++|+. ++.|+.||+++++.++.+..|-+ .|..+.|-++|++
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce
Confidence 9999999998887763 4578899999999 56666665 88999999999999999998888 8999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchh--hhhcccccccccc
Q 001159 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL--LRMLEGRAMDKNR 680 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~ 680 (1135)
+++.++|+.++||+....-+++.+.... .....++..+|++++++.-+.|+.|.++.+....+. .+.+++|.
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~----- 430 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS----- 430 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee-----
Confidence 9999999999999999877766554322 226789999999999999999999999986433110 11111110
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
-
T Consensus 431 ------------------------------------------------------------------------------v- 431 (503)
T KOG0282|consen 431 ------------------------------------------------------------------------------V- 431 (503)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
.+.-..+.|||||++|++|+ ||.+.+||..+-+++..+++|...+..+.|+|.....+|++++||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 34455689999999999998 999999999999999999999999999999998888999999999999996
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-30 Score=244.90 Aligned_cols=242 Identities=16% Similarity=0.291 Sum_probs=207.8
Q ss_pred ccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEe-ecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l-~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+.+|.+.|..++|+|- |..||+|+.|..|+||+...+....+...+ .+|+..|.+++|+|.|+ +|++||.|.++.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEE
Confidence 6789999999999998 999999999999999999965544444333 37999999999999999 9999999999999
Q ss_pred EEcCC--CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC---ceeEecCCCCcEEEEEEcCCCCEE
Q 001159 482 WDVVA--GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 482 wd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
|.-.. .+++.++.||...|.+++|++++ .+|++++.|+.|-||.+.... +...+..|...|..+.|+|....|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 98553 47889999999999999998755 899999999999999987543 445788999999999999999999
Q ss_pred EEEecCCCCCCeEEEEECC---CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
++++. |.+|++|+-. .-.+++++.+|.. .|.+++|++.|..|++++.|++++||...+ .+.. .+..
T Consensus 166 ~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~-~~sr 234 (312)
T KOG0645|consen 166 FSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG-MHSR 234 (312)
T ss_pred EEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch-hccc
Confidence 99987 8899999866 3467899999998 899999999999999999999999998652 1211 2234
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.++.+.|. ...|++++.|+.|++|.-.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEec
Confidence 68889998 4589999999999999754
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=264.11 Aligned_cols=290 Identities=19% Similarity=0.283 Sum_probs=247.8
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .+..|+|||++|++++-||.|.+|++.+++...+-+..+. ....+ + ...|.|+.||.|
T Consensus 214 Sh~-EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fMM--------m-d~aVlci~FSRD 274 (508)
T KOG0275|consen 214 SHV-ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFMM--------M-DDAVLCISFSRD 274 (508)
T ss_pred cch-hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cceee--------c-ccceEEEeeccc
Confidence 344 8899999999999999999999999877654333332221 11111 4 889999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEEEe-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
...+|+|+ ||+|+||.+.+|.|++.|. +|+..|+|+.||. |+..+.+++.|.++++.-+.+|+++++++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 7999999999999 8888889999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-cEEEEE-ecCeEEEEecCCcee
Q 001159 931 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLECS 1008 (1135)
Q Consensus 931 l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~-~d~~v~vwd~~~~~~ 1008 (1135)
..|++||..+++++.||+|++|+.++.+++.+.... +. ..+|..+..-|.+ .+++++ ..++|.|-++.++.+
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~---d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL---GT---DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC---CC---cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 999999999999999999999999998865543211 11 2567777777655 456665 578899999999999
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
+.+.......+...+++.||.|.++.+.++|+.++.|.+.+|.+-.++..|+ ..++.+..+| ..++|++
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchhhh
Confidence 9998877667788899999999999999999999999999999999888764 4566788899 6689999
Q ss_pred EecCCcEEEEe
Q 001159 1089 GMSDGAVHVVE 1099 (1135)
Q Consensus 1089 g~~dg~v~~W~ 1099 (1135)
-++||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.9e-31 Score=260.79 Aligned_cols=232 Identities=16% Similarity=0.299 Sum_probs=206.9
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....|+|+.+ |...+++|..|++|+|||.++-.+.+ .+.||++.|.|+.|. .+ .|++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 3456999998 77789999999999999999876665 788999999999995 44 899999999999999999
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce---eEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
|+++.++-+|...|..+.|+. .+++++|.|.+|.+||+.....+ ..+.+|...|..+.|+. +++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 999999999999999999853 69999999999999999887643 36788999999999864 58998864
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
|.+|++|+..+++.++++.+|.. .|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred --CceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 89999999999999999999988 78877764 78999999999999999999999999998866 68999996
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001159 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+.+++|+.||+|+|||+.++
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 568999999999999999877
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.4e-29 Score=309.39 Aligned_cols=291 Identities=14% Similarity=0.161 Sum_probs=238.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|.+.|++++|+|+|+ ++|+|+.|+.|+||++........ . ...+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 789999999999999864211000 0 00000012 2346799999988 57899
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6789999999999997 666 8999999999999999999998888754 67999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-----
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1135)
+.|++. +|.++++|+.||.|++||++... ....+.+|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 999653 45899999999999999998765 455778899999999997 7788988875 88999999974
Q ss_pred -CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC-----------CCCCCCcceEEEcCCC
Q 001159 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPASPRLRFNKEG 644 (1135)
Q Consensus 577 -~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~ 644 (1135)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+.....++..+.. ..+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 356788888877 789999999999999999999999999876654433321 1223458999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001159 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~ 661 (1135)
.+|++|+.+|.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=238.59 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=221.5
Q ss_pred hhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
.++..|.++|.++.|+-||+|.++++.|.+|++|+...+..++ ++.+|...|..++.+.|+. .|++|+.|+.|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3467899999999999999999999999999999999998777 7889999999999999998 7999999999999
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
||+.+|+.++.|.+|.+.|+.+.|+... ..+++|+.|.++++||-++.. +++.+......|.++..+ +..+++|
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999997655 899999999999999998754 455566666688888765 4567777
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ||+++.||++.|.....+-++ +|++++|+++++..++++.|+++++.|-.+|+.++.+.+|.....=..++
T Consensus 162 S~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred cc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 75 899999999999988877776 79999999999999999999999999999999999999987765556778
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.....+++|+.||.|.+||+.+.
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ecccceeEEeccCCceEEEEEeccc
Confidence 8888889999999999999999877
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7e-30 Score=253.94 Aligned_cols=291 Identities=18% Similarity=0.333 Sum_probs=243.4
Q ss_pred CcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 334 ~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+.++...+.|.+.|.++... ++ .+.+|++||.++|||.... ...+ +.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk-~~~~-------------------~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGK-SIKT-------------------IVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCc-eEEE-------------------EecCCcceee
Confidence 3567778888899999999999 44 5779999999999998744 3332 6799999999
Q ss_pred EEEcCCCC---eEEEEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---
Q 001159 414 CVWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1135)
Q Consensus 414 v~~spd~~---~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1135)
++|--... .+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|.||+..+
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 88855333 5999999999999999877542 22223459999999999999999 899999999999999321
Q ss_pred ----------------------CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcE
Q 001159 487 ----------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 487 ----------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 544 (1135)
+.++-++.||..+|.++.|.+. ..+++++.|.+|+.||+.+++....+.. +..+
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 1245678899999999999873 6899999999999999999988877664 4578
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe---EEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.++.++|..++|++++. +..|++||++++. ...+|.+|.+ .|.++.|+|... .|++++.|+++++||+++.
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999986 8889999999753 4578899998 999999999765 5677999999999999987
Q ss_pred c-eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 621 N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 621 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+ ++..+..|.. .|.++.|+. +..+++|+.|++|+|+.-
T Consensus 379 k~plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 379 KAPLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCcceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 7 8888887744 799999975 669999999999999864
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=243.54 Aligned_cols=284 Identities=17% Similarity=0.281 Sum_probs=252.4
Q ss_pred ecCCCCeeEEEEec---CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 343 LNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp---~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
-.|..+|-.++||| +| ++|++++.||.-.+-+-++|..+.+ +.||.+.|.+..+..+
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecCch
Confidence 34888999999985 77 6899999999998888888888775 7899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~ 498 (1135)
....|+++.|-+.++||.-+|..+. .+ .|..-|.+++|+.|.. +|++|+.++.++|||++..+ +...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998776 44 4888899999999999 89999999999999998654 4568899999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|..+.|.... +.+++.+.|++||+||.+++..+..+.. ...|+++.++++|++|..+. .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999998765 7899999999999999999988877663 45789999999999988764 5579999999999
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE-eCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
+++.++... .|.+..++|+...+++|++|..++.||..+++.+..+ ++| ..+|.|+.|+|+|...++|+.||+|+
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCceEE
Confidence 999888766 5889999999999999999999999999999999886 544 45899999999999999999999999
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
+|....+
T Consensus 293 lWQt~~~ 299 (334)
T KOG0278|consen 293 LWQTTPG 299 (334)
T ss_pred EEEecCC
Confidence 9988666
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1e-28 Score=270.89 Aligned_cols=247 Identities=23% Similarity=0.412 Sum_probs=221.4
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|..+|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 6678999999999999998 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+..|...|.++.|++.. .++++++.||.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 99988888999999999999998863 78888888999999999988888888888889999999999888888753
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCC
Confidence 78899999999999988887776 899999999999999999999999999999888888765543 7899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001159 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.++++++.+|.+++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
No 67
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=5.2e-28 Score=254.38 Aligned_cols=665 Identities=13% Similarity=0.165 Sum_probs=360.4
Q ss_pred hccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCce---eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..+-.. .....+.+..-.|.++.|.|.... +++++ .-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s~-a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILASG-AHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEec-cCce
Confidence 3788999999999999 6779999999999999999854321 111223333447899999998774 45555 4789
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-eEecCCCC-cEEEEEEcCCCCEE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~-~i~~~~~s~~~~~l 556 (1135)
++|||+.+++.+..+.+|...|.++.|+. ||.++++.+.|+.|+|||.+..... ....+|++ .-..+.|..+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999965 5699999999999999999876543 44455554 44566777766688
Q ss_pred EEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEE--EeCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTT--VDADGGL 632 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~ 632 (1135)
++.+.+......|++||.+. +..++++.......|.---|.||.+.++.++ .+.++.++.+...++... +.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 87776655677899999885 4456665554443566667899988776654 677888888776543211 111000
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC----------chhhhhc---------------------cccccccccC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRML---------------------EGRAMDKNRC 681 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~---------------------~~~~~~~~~~ 681 (1135)
......++-|...+-+..+. ..+++.+... .+.++.| .+....+..+
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKv 386 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKV 386 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCcccccccc
Confidence 00112222222111111111 0111111000 0001100 0000000000
Q ss_pred CCCC----------CCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccc
Q 001159 682 PSEP----------ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 682 ~~~~----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~ 751 (1135)
...+ .....+.....++...+ .+.... |......-...+.+-.......+. ....++-.+
T Consensus 387 Sl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v---~~ppaa------P~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~ 456 (1012)
T KOG1445|consen 387 SLAPAQRSHSPPPPEPVPTPKVAQTPSFVPV---PTPPAA------PRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELD 456 (1012)
T ss_pred ccCchhccCCCCCCCCCCCcccccCCCCccc---cCCCCC------CCccccccccccCCCccccCCCcC-cchhhhhhc
Confidence 0000 00000000001100000 000000 000000000000000000111111 111111111
Q ss_pred cCCcCCccceeEe--ec-CCcccccceEEEEEEecCCcceeE------ecccceeeeEEeccccCCC------CCccc-c
Q 001159 752 IPDISDPSQIKAL--RL-PDSIAASKVVVRLIYTNSGLSLLA------LASNAVHKLWKWQRTERNP------SGKAT-A 815 (1135)
Q Consensus 752 ~~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~~s~dg~~l~~------~~~dg~i~iw~~~~~~~~~------~~~~~-~ 815 (1135)
............- .. ...+..+.+ .. .+|....++- ..+-.+..+..-..++..| .+... +
T Consensus 457 ~~~~E~~~g~~~~~~dad~~~g~sS~~-s~--~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sa 533 (1012)
T KOG1445|consen 457 YRPYEKENGVHTPNADADSTQGNSSPI-ST--ISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISA 533 (1012)
T ss_pred ccccccccCccCCCcccccccCCCCCc-cc--cCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccc
Confidence 1110000000000 00 000000000 00 0000000000 0000000000000000000 00000 0
Q ss_pred cc------c----------CeeecCCCCcceec-----cCCCCCCCCCceEEEEeecCCCEEEEE---eCCeEEEEECCC
Q 001159 816 NV------A----------PQLWQPPSGTLMTN-----DINESKPTEESAACIALSKNDSYVMSA---SGGKVSLFNMMT 871 (1135)
Q Consensus 816 ~~------~----------~~~~~~~~~~~~~~-----~~~~~~h~~~~i~~l~~s~dg~~la~~---~dg~i~vwd~~~ 871 (1135)
+. . +.-+.-..|+.... .+....- .-+-.+--|..+.+++|+- +.|.|.||++..
T Consensus 534 t~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~ 612 (1012)
T KOG1445|consen 534 TNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNE 612 (1012)
T ss_pred cccccccccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEEcCC
Confidence 00 0 00000000100000 0000000 1111223355677777754 378999999874
Q ss_pred -ccEEEE-EeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-------eeeEEecCcCCCeEEEEEcCC-CCe
Q 001159 872 -FKVMTM-FMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPT-LNA 939 (1135)
Q Consensus 872 -~~~~~~-~~~--h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d-~~~ 939 (1135)
|++.-. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ ++-..+.+|...|+++.|+|- ...
T Consensus 613 PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 613 PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence 332211 111 34579999999999999999999999999998754 345678899999999999995 468
Q ss_pred EEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCC
Q 001159 940 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALP 1018 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~ 1018 (1135)
|++++.|.+|++||+.+.+ ....+.||. +.|..++|||||+.+|+ |.|++|+||+................
T Consensus 693 La~asyd~Ti~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg 764 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG 764 (1012)
T ss_pred hhhhhccceeeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc
Confidence 9999999999999999877 344567777 79999999999999999 89999999999322222222211113
Q ss_pred CCEEEEEEeeCCCEEEEEeCCC----eEEEEECCCce--eeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC
Q 001159 1019 APISSAIYSCDGLLVYAGFCDG----AIGVFDAETLR--FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD 1092 (1135)
Q Consensus 1019 ~~i~~~~~s~d~~~l~~~~~dg----~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 1092 (1135)
..--.+.|.-||+++++.+.|. .|.+||..+.. .+++.... ..-.++.-.|.++.+.+++||-.|
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vaps~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAPSPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccCccccccccCCCceEEEecCCC
Confidence 3445678999999998887765 58899987643 33332211 112334445666667788999999
Q ss_pred CcEEEEecCCCcc
Q 001159 1093 GAVHVVEPSDAEL 1105 (1135)
Q Consensus 1093 g~v~~W~~~~~~~ 1105 (1135)
..|.+|.+.....
T Consensus 836 ~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 836 RFVNMYEVIYESP 848 (1012)
T ss_pred ceEEEEEecCCCc
Confidence 9999999876553
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.2e-30 Score=258.22 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=253.2
Q ss_pred CCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+..|......+. |.+.|..+.|-++.. .|++|+.|..|++|++...+.-. ...+.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCc
Confidence 445555666666 899999999999976 58999999999999998766221 11267888999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
+++.|.++++++++++.|+.+++|++....... +|.||.+.|+++.|..... .+++|+.|.+|++||+....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999876555 7889999999999988776 59999999999999999999888
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
++- ....+..|+..+ ..+++|-.|++|++||+++.........++ .|+++..++++..|.+++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 764 334566666542 678999999999999999999988888776 9999999999999999875 778999
Q ss_pred EECCCCeEEEEeeccc---CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
.|+++......+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|.+++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999888876532 2247789999999999999999999999999999999998776655799999999999999
Q ss_pred EEECCCcEEEE
Q 001159 649 VTTSDNGIKIL 659 (1135)
Q Consensus 649 ~~~~dg~i~iw 659 (1135)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.6e-29 Score=255.27 Aligned_cols=283 Identities=18% Similarity=0.273 Sum_probs=241.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
..+.|.+++|||..++=+|+.+ .-.+.||+..+.....+ +..-...|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3468999999997765444433 34899999887655432 334567799999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644444 67899999999999998876 899999999999999999987778999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEe
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~ 583 (1135)
|+|..+ .+++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ ...|++||+.+|. .+..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 999765 7999999999999999999865555556889999999999999999987 5679999999655 44555
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
..|+. .|+|+++..++..|++++-|+.|++||+.+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 55776 99999999999999999999999999999999999987653 6899999999999999999999887643
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.2e-28 Score=299.70 Aligned_cols=271 Identities=14% Similarity=0.195 Sum_probs=218.3
Q ss_pred cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCC----Cce
Q 001159 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GEL 443 (1135)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~----~~~ 443 (1135)
+|.+++|+......... .....+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888775433211 001114469999999999999999999999999999997642 111
Q ss_pred e-eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCe
Q 001159 444 R-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1135)
Q Consensus 444 ~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~ 522 (1135)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|+|. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 4567999999986433 7999999999999999999999999999999999999874 3479999999999
Q ss_pred EEEEeCcCCCceeEecCCCCcEEEEEEc-CCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCC
Q 001159 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 523 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|++||+.+......+..+ ..+.++.|+ +++.++++++. ++.|++||++++. .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777776644 578899995 57899999875 8899999998766 4667778877 89999997 67
Q ss_pred CEEEEEeCCCeEEEEECCCC------ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 601 NRFLAAGDEFQIKFWDMDNM------NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++++++.|++|++||+..+ +++..+.+|.. .+.+++|++++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 56677776644 6889999999999999999999999997654
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=220.02 Aligned_cols=310 Identities=16% Similarity=0.252 Sum_probs=243.4
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+++.++.....|.+|+|+|.|. +.|+|+...+.+|..+..-..++.. .+.......+.....+.|.+.|.|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEe
Confidence 45677777888999999999998 8899999999998876543222110 000000011112234679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCC--CceeeeeEeecccCCEEEEEEecC---CCeEEEEEEc-CCCcEEEEEcCCCeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~--~~~~~~~~l~~h~~~v~~v~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~ 490 (1135)
||+|.+||+|++|.+|++.-.+.. .......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 999999999999999999766543 333344467889999999999754 222 566655 5788999999999999
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC-------CCCcEEEEEEcCCCCEEEEEecCC
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+.+|.+.|.++.- . +|.++++|+.|.+|++||++-..++..+.. ....|.+++..|.|++|+++..
T Consensus 177 ~a~sghtghilalys-w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-- 251 (350)
T KOG0641|consen 177 HALSGHTGHILALYS-W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-- 251 (350)
T ss_pred eeecCCcccEEEEEE-e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC--
Confidence 999999999998852 2 348999999999999999998877765432 1257999999999999999865
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC--c--eEEEEeCCCCCCCcceEE
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--N--MLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~--~--~~~~~~~~~~~~~v~~~~ 639 (1135)
|....+||++.++.++.|..|.. .|+++.|+|...++++++.|..|++-|+... . ++..... +...+..+.
T Consensus 252 --dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e--hkdk~i~~r 326 (350)
T KOG0641|consen 252 --DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE--HKDKAIQCR 326 (350)
T ss_pred --CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe--ccCceEEEE
Confidence 77899999999999999999988 8999999999999999999999999998741 1 2223333 345788899
Q ss_pred EcCCCCEEEEEECCCcEEEEEcC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
|+|..--+++.+.|.++.+|-+.
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99998889999999999999753
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.5e-28 Score=276.27 Aligned_cols=306 Identities=16% Similarity=0.261 Sum_probs=251.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
++..|.+++.+|||. .+|||+ .||.+.||+.+.--... ..++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689999 99999999976421100 011111 12222335679999999999999999
Q ss_pred EEEEeCCCeEEEEEeCC----------C-----CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
||+|++|+.|.||.... | +..+....+.+|...|.+++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 12345668899999999999999999 9999999999999999999
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------CCcEEEEEEcCCCCEEEEEec
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
+.+.++.+|.+.|..+.|.|.+ +++++-+.|++|++|++.+-+....+..+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998876 99999999999999997776665555443 236788999999999998876
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC-----CC------------EEEEEeCCCeEEEEECCCCceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RN------------RFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|+.|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 556677899999988888999999999 9999999872 11 46779999999999998888776
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+..-.. ..|..++|+|||..|++++.||+|.++..+..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6543322 37999999999999999999999999998654
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.6e-29 Score=233.55 Aligned_cols=291 Identities=16% Similarity=0.303 Sum_probs=248.3
Q ss_pred ceeEecCCCCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC
Q 001159 533 SRVDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 609 (1135)
......+|..+|..++||| +|-+|++++. |+.-.+-+-.+|.-+.+|.+|.+ .|.+.+++.+....++++.|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaad 80 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAAD 80 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhccc
Confidence 3456677888999999976 7888998874 67777888889999999999998 89999999888888899999
Q ss_pred CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCC
Q 001159 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1135)
-+-++||.-+|..+..+.. .+ -|.+++|+.|.++|++|+.+..+||||++........+.+
T Consensus 81 ftakvw~a~tgdelhsf~h-kh--ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g---------------- 141 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSFEH-KH--IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG---------------- 141 (334)
T ss_pred chhhhhhhhhhhhhhhhhh-hh--eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC----------------
Confidence 9999999999999988863 33 6899999999999999999999999999877544444444
Q ss_pred CcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCc
Q 001159 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1135)
Q Consensus 690 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~ 769 (1135)
T Consensus 142 -------------------------------------------------------------------------------- 141 (334)
T KOG0278|consen 142 -------------------------------------------------------------------------------- 141 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEe
Q 001159 770 IAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
|...| ..+.|....+.+++.+.|++||+||.. ++..+... .. ..+|+++.+
T Consensus 142 -htg~I-r~v~wc~eD~~iLSSadd~tVRLWD~r----------------------Tgt~v~sL-~~----~s~VtSlEv 192 (334)
T KOG0278|consen 142 -HTGGI-RTVLWCHEDKCILSSADDKTVRLWDHR----------------------TGTEVQSL-EF----NSPVTSLEV 192 (334)
T ss_pred -CCCcc-eeEEEeccCceEEeeccCCceEEEEec----------------------cCcEEEEE-ec----CCCCcceee
Confidence 44445 778888888889999999999999654 44433321 11 678999999
Q ss_pred ecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-cCcCCCe
Q 001159 850 SKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRI 928 (1135)
Q Consensus 850 s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i 928 (1135)
++||++|.++..+.|++||..+..+++.++.+ ..|.+..++| +...++.|+.|..++.||..+++.+..+ ++|-++|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV 270 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV 270 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeeccCc-cccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCce
Confidence 99999999999999999999999999888744 4789999999 7789999999999999999999999886 8999999
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCc
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
-||.|+|||...++||.||+|++|.+..++
T Consensus 271 hcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 271 HCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999999999999887665
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-28 Score=229.19 Aligned_cols=284 Identities=16% Similarity=0.261 Sum_probs=228.7
Q ss_pred eEEEEec--CCCeEEEEE-----eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CC
Q 001159 350 MSMDFHP--QQQTILLVG-----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GL 421 (1135)
Q Consensus 350 ~~v~~sp--~g~~lla~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~ 421 (1135)
.++.||| .++..+|++ ...|.+.|-++..++.+.. +..+ .-.+.+..++||++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCcc
Confidence 5778888 444333333 2457899999875444321 1111 24567999999995 55
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
.+++++.||+++|||..... .++..++.|...|.++.|++-.++ .++++|.|++|++|+...++.+.+|.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 78889999999999965433 355578899999999999997776 677889999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE-EEEEecCCCCCCeEEEEECCCC-eE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEG-AI 579 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~ 579 (1135)
..+|+|... +.++++|.|+++++||++.......+..|...|.++.|+.-... +++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 999999854 89999999999999999999888889999999999999986655 455553 889999999864 46
Q ss_pred EEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCc-eEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGI 656 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 656 (1135)
+..+.+|.- .|+.+.|||.. ..|++++.|-+++|||...+. .+.+...|.. .|..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 778888776 89999999975 577889999999999998543 4455555544 688899998 78899999999999
Q ss_pred EEEEc
Q 001159 657 KILAN 661 (1135)
Q Consensus 657 ~iwd~ 661 (1135)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-27 Score=224.11 Aligned_cols=286 Identities=12% Similarity=0.148 Sum_probs=240.7
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
..|+.+++.+.|+.+|. ||+++++|..+.||-..+|+.+.+ +.||.+.|.|++..-+.++
T Consensus 7 ~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred ccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcce
Confidence 34999999999999998 899999999999999999998876 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE-----cCCCcEEEEEcC-------CCeee
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-----GDDKMIKVWDVV-------AGRKQ 490 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-----~~d~~i~iwd~~-------~~~~~ 490 (1135)
+++|+.|.++++||+++|+++. .+ ....+|..+.|+++|. +++.+ +..+.|.++|++ ..++.
T Consensus 67 liTGSAD~t~kLWDv~tGk~la---~~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLA---TW-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeccccceeEEEEcCCCcEEE---Ee-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999999999999999998776 33 3567899999999998 44433 345689999998 44567
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
..+..+...++.+.|.|.+ ++|++|..||.|..||.+++.... ....|...|+.+.+++|..++++++. |.+-
T Consensus 141 ~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtta 214 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTA 214 (327)
T ss_pred EEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccc
Confidence 7888899999999999877 899999999999999999976554 55778889999999999999999975 8889
Q ss_pred EEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEE--------------EECCCCceEEEEeCCCCCCCc
Q 001159 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF--------------WDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i--------------wd~~~~~~~~~~~~~~~~~~v 635 (1135)
++||..+-+.++++.... +|++.+++|-...++.|+.....-+ |++-..+.+..+++| .++|
T Consensus 215 kl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPI 290 (327)
T ss_pred eeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCc
Confidence 999999999999998765 8999999998888888764322222 222222345556655 5599
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++++|+|+|+..++|+.||.|++.-....
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999866543
No 76
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.8e-27 Score=264.01 Aligned_cols=287 Identities=14% Similarity=0.119 Sum_probs=222.9
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las 425 (1135)
..|.....++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| ++++||+
T Consensus 21 ~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 21 LNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred eccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 46777778888764 4556667777888876654221 11111111111234789999999999999 8999999
Q ss_pred EeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999999986532 1234478899999999999998644 799999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc-EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-E
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-I 579 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~ 579 (1135)
+++|+|++ .+|++++.|++|++||+++++....+..|.+. +..+.|.+++..+++++.+...++.|++||+++.. .
T Consensus 173 sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 173 SLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred EEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 99999854 89999999999999999998888888877653 45678999988888877655568899999998754 3
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
+.....+....+....|+++++.+++++ .|+.|++||+.+++++....... ..++..++|.|..
T Consensus 251 ~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 251 YSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred eeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 4444444443566678999999999887 59999999999998877665432 3367888888853
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.7e-27 Score=221.70 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=204.8
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||..+++.+.++.+|.+|.+|+.|.++.+|-...|+.+. ++.||.+.|+|++..-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998887665 8899999999999999999 89999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-----CCeEEEEeCc-------CCCceeEecCCCCcEEEEEEc
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 550 (1135)
|+.+|+++.+++ -..+|..+.|++.+ ++++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 67789999998865 55555433 3669999988 344566778888999999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|-+++|++|.. +|.|..||.++|.. +.+-..|.. .|+.+++++|..++++++.|.+-++||..+.+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999974 88999999999854 555566666 8999999999999999999999999999999999998754
Q ss_pred CCCCCcceEEEcCCCCEEEEEECC
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
.+|++.+++|-...++.|+..
T Consensus 232 ---~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ---ccccceecccccceEEecCCc
Confidence 379999999987777777654
No 78
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=264.34 Aligned_cols=301 Identities=15% Similarity=0.191 Sum_probs=218.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC---CC
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DG 420 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp---d~ 420 (1135)
.|.+.|+++.||+||+ |||+|+.||.|+||.+...+.... .. ......... +. ..+.+.-+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~-~~-----~~~~~~~~~--~~-~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV-AE-----GDSSCMYFE--YN-ANSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc-cc-----cccchhhhh--hh-hccccCccccccccccc
Confidence 3899999999999998 799999999999999876433210 00 000000000 00 000011111111 01
Q ss_pred C--eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 421 L--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 421 ~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|++++.|++|++|++....|++.|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11111112222221111111113444788999999999999876 79999999999999999999999996 999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|+||+|+|.+| +++++|+.||.||||++...+...-... ..-|++++|.|||++.++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999977 8999999999999999986554443333 368999999999999999987 8899999998877
Q ss_pred EEEEeeccc-------CCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 579 IKRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 579 ~~~~~~~~~-------~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
....+.-+. ...|+.+.|.|.. ..+++.+.|..|||+|.++.+++..+++......=....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 766543221 1269999998744 45888889999999999999999999876555555678999999999999
Q ss_pred ECCCcEEEEEcCCC
Q 001159 651 TSDNGIKILANSDG 664 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~ 664 (1135)
++|..|+||+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998543
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.7e-27 Score=234.68 Aligned_cols=282 Identities=20% Similarity=0.297 Sum_probs=235.5
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC-CccEEEEEEcCCeEEEEeCc
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~s~dg~i~iwd~~ 529 (1135)
-|...|.++... ++ .|+||++||.+++|| ..|+..+++.||.++|.+++|.-.+ ....+++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899999887 45 899999999999999 7899999999999999988876433 22469999999999999888
Q ss_pred CCCcee----EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-------------------------CCeEE
Q 001159 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1135)
Q Consensus 530 ~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 580 (1135)
.+.... ...+|...|.++...++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765443 34589999999999999999999987 8889999931 13456
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.++.||.+ +|.++.|++ ...+++++.|.+|+.||+.++..+.++.... ..+++.++|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 77889988 999999998 6789999999999999999999998887653 579999999999999999999999999
Q ss_pred cCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccc
Q 001159 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
.+++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876610
Q ss_pred ccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCe
Q 001159 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 741 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
.+ ...
T Consensus 335 ---------------------------------s~-v~~----------------------------------------- 339 (423)
T KOG0313|consen 335 ---------------------------------SV-VSQ----------------------------------------- 339 (423)
T ss_pred ---------------------------------ce-eEE-----------------------------------------
Confidence 00 000
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeecCCC-EEEEEe-CCeEEEEECCCcc-EEEEEeCCCCCeEEEEEecCCCcE
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNI 897 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~ 897 (1135)
.+.+ | .+-|.++.++|... .|++|+ |+++++||+++.+ .+..+.+|.+.|.++.|.. +..
T Consensus 340 ------------s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~ 402 (423)
T KOG0313|consen 340 ------------SLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGL 402 (423)
T ss_pred ------------eeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--Cce
Confidence 0111 6 77888899998554 567777 9999999999877 8999999999999999984 679
Q ss_pred EEEEeCCCcEEEEEc
Q 001159 898 IAIGMEDSSVQIYNV 912 (1135)
Q Consensus 898 lasg~~dg~v~iwd~ 912 (1135)
|++|+.|.+|+|+.-
T Consensus 403 IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 403 IVSGGADNKLRIFKG 417 (423)
T ss_pred EEeccCcceEEEecc
Confidence 999999999999864
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-26 Score=222.83 Aligned_cols=282 Identities=14% Similarity=0.226 Sum_probs=231.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
-.+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++-.|..+.|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 357899999999998 566788899999999999988765 445666788899988777777
Q ss_pred EEeC--CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 425 VAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 425 s~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
.++. |.+|+..++.+.+.++ -+.||...|.+++.+|-+. .+++++.|++|++||++..++...+.....+ .
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--I 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--c
Confidence 7766 8899999999998777 7899999999999999988 8999999999999999988887766543333 4
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecC---CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
++|.|. |-++|++...+.|++||++... +-..+.. .....+.+.|||||++|+.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 566665 4788888888899999998753 2333333 3558899999999999998764 778999999999
Q ss_pred eEEEEeecccCCc--eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 578 AIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 578 ~~~~~~~~~~~~~--v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
..+.++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|...++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999999875 344789999999877776655 46
Q ss_pred EEEEEcC
Q 001159 656 IKILANS 662 (1135)
Q Consensus 656 i~iwd~~ 662 (1135)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7788554
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2e-27 Score=245.11 Aligned_cols=297 Identities=19% Similarity=0.266 Sum_probs=225.6
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|..++|.++++.|.|.++++|+-|..|++||+..-..... ......+. - ...|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~------------------~fr~l~P~--E-~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR------------------SFRQLQPC--E-THQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccch------------------hhhccCcc--c-ccccceeeec
Confidence 4444449999999999999999999999999875322110 01111222 1 5589999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEEEE------------EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVMTM------------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~~~------------~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
+.|..|++.+ ..+.+|+|-........ -+||...++|.+|+|+....+.+++.||++||||+...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888777 78899999876544333 2578999999999998888999999999999999986542
Q ss_pred -eEEec-----CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 918 -KTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 918 -~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
+++++ +-.-+++..+|++||+++|+|+.||.|.+|+..+........+. ..|. ....++++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk--~AH~-~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK--DAHL-PGQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEee--eccC-CCCceeEEEeccccchhh
Confidence 23332 23346899999999999999999999999998654433222222 2333 124799999999999999
Q ss_pred E-EecCeEEEEec-C-CceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC------CCeEEEEECCCceeeeeeCCceec
Q 001159 992 V-VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC------DGAIGVFDAETLRFRCRIGPSAYI 1062 (1135)
Q Consensus 992 ~-~~d~~v~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~------dg~I~vwd~~~~~~~~~~~~~~~~ 1062 (1135)
+ +.|++++|||+ + .+++..+.... ...+-+.++||||.++|++|+. .|.+++||..+.+.+.++....
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~-- 457 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST-- 457 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC--
Confidence 9 99999999999 3 34444433322 2456789999999999999864 5789999999999999888552
Q ss_pred cccccCCCCccEEEEecCCCCCEEEEEecCCcEEEE-ecCCC
Q 001159 1063 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDA 1103 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W-~~~~~ 1103 (1135)
.+++.+.|+| .=++|..|+.||+++++ |....
T Consensus 458 --------aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 458 --------ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred --------ceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 6678899999 66899999999999886 44443
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.4e-27 Score=264.82 Aligned_cols=283 Identities=17% Similarity=0.288 Sum_probs=248.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...+.+..|. ++ .+++|+.+++|++||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 478899999999999999887653 1679999999999988889999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.|.++++||..++.+.. .+.+|...|.++...+. ++++|+.|.+|++|++.++.+++.+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998777 88899999999988654 789999999999999999999999999999999998
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-eEEEEe
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1135)
.+ +.++++|+.|++|++||+.+.+++..+.+|..+|.++.+.+. ..+++|+. |+.|++||++++ +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 85 379999999999999999999999999999999999988766 88999987 788999999999 999999
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.+|.. .+..+.+ .+++|++++.|++|++||..+++++.++... +...|..+++. ...+++++.||.+.+||+.+
T Consensus 410 ~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99987 5554443 5789999999999999999999999999874 33467777665 46889999999999999999
Q ss_pred Cchhhhhc
Q 001159 664 GVRLLRML 671 (1135)
Q Consensus 664 ~~~~~~~~ 671 (1135)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 9 444433
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=229.13 Aligned_cols=312 Identities=17% Similarity=0.217 Sum_probs=243.2
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccc-cCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++-.....|+.++.+.+|||||. ++|+|+.|-.|+|.|++..-... .+.+...+.... .++. ..+..|.+.|+++.
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-hPvI-RTlYDH~devn~l~ 179 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-HPVI-RTLYDHVDEVNDLD 179 (430)
T ss_pred cceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-CceE-eehhhccCccccee
Confidence 34445555999999999999998 89999999999999997321100 000000011111 1222 23667999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee--
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-- 493 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 493 (1135)
|+|....|++|+.|++|+++|+......+....++ ...+|.++.|.|.|. +|+.|.+-.++++||+.+-++...-
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCc
Confidence 99999999999999999999998764433332332 456899999999999 8999999999999999998876543
Q ss_pred -cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-CCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 494 -EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APG-NWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 494 -~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
..|.+.|+++.+++.+ .+.+++|.||.|++||--+.+++..+. .|+ ..|.+..|+.+|+++++.|. |..++
T Consensus 257 d~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVK 330 (430)
T ss_pred ccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceee
Confidence 3589999999998765 899999999999999998888887653 344 48999999999999999875 88999
Q ss_pred EEECCCCeEEEEeecccC----CceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 571 EWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
+|.+.+++.+..+.|... .--+...|+....+++.-. ..+.+.-||.++...+..+.. ++.+.+..+.-+|.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCC
Confidence 999999999999987521 0123355777777777744 457899999999887776654 3455899999999999
Q ss_pred EEEEEECCCcEEEEEc
Q 001159 646 LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~ 661 (1135)
.+++++.|..+|+|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 9999999999999963
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-26 Score=216.87 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=238.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|...|.+|+|+-+|. -||+|+.|+++.+|+++....... ....+|.+.|-.++|+| ...++
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCcce
Confidence 677999999999998 589999999999999998754332 12678999999999998 56799
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++++.|.+|++||+..+++.... . ..+.=.-+.|+|+|. +++.++.|..|.+.|.++.+.+...+ ....+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877632 2 233345689999999 89999999999999999888776654 45567888
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
+|+.++ ++++.....|+|.|..+...+.+..+..|.....|+.|+|+|+++++|+. |..+.+||+..--+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 888443 78888888899999999999999999999999999999999999999986 888999999999899999
Q ss_pred ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
..+.- +|+.+.|+-||++|++|++|..|-|=++.+|..+..++..+ +...++|+|...+||.+.+|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 89999999999999999999999999999999999998654 46899999999999988775
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6e-27 Score=252.79 Aligned_cols=279 Identities=16% Similarity=0.240 Sum_probs=240.0
Q ss_pred eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC
Q 001159 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 428 (1135)
.+-++||..+ .||+|. ...|++|+..++....- ..-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3457788655 567664 45899999998874321 2224788999999999999999999
Q ss_pred CCeEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCCCCCeeEEEee
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~ 506 (1135)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 6667 99999999998 33 789999999999999998776655 88999999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+++ .++++|+.|+.+.|||.........+..|...|.+++|+|- ...||+|+. ..|+.|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 865 89999999999999999888999999999999999999995 456777764 5699999999999999988876
Q ss_pred ccCCceeEEEecCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.. .|.++.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 55 6999999999887777 45778999999999999999998865 799999999999999999999999999865
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-26 Score=223.92 Aligned_cols=274 Identities=18% Similarity=0.256 Sum_probs=222.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc-cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.++.|.+++|||....++++|+-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999874 3221 1245699999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||.|++|+.||.+...++.++. -...++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998433 56789999999999887655589999999999999999999988886 45667777
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC--eE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1135)
..-. .+++.+..++.|.+|+++....... ... -.-.+.|++...|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 5422 5889999999999999976554332 111 2336889998888887787775 777888777765 55
Q ss_pred EEEeecccC--------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE
Q 001159 580 KRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 580 ~~~~~~~~~--------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 651 (1135)
-.+|+.|.. ..|++++|+|....|+++|.||++.+||-+....+.+...+.. +|+++.|+.+|.++|-+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 667777763 1477899999999999999999999999998887777766644 899999999999988664
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7e-27 Score=240.87 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=231.9
Q ss_pred ccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 772 ASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
.+.| .+++|+|...+=++.++.-.+.+|+.... ........ . ...+.++.|-.
T Consensus 26 ~~~v-ssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 26 HNSV-SSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred cCcc-eeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhhHHh---h-ccceeEEEeec
Confidence 3556 99999997665555555667777754321 11111111 2 77899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEE
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
||+++|.|+ .|.|+|||+.+...++.+.+|..+|..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877889999999999999999999999999999999999999999877789999999999
Q ss_pred EEEcCC-CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCcee
Q 001159 931 LAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECS 1008 (1135)
Q Consensus 931 l~~s~d-~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~ 1008 (1135)
.+|+|- +.+++|||-||+|++||+.+.. ........| .+|-.+.|-|.|..+|+++...|+|||+ ++...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 5589999999999999998863 112222222 5789999999999999999999999999 46555
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..... .|...|+|+++..++..|++|+-|+.|+|||+.+.+.+..+... ...++++-+| |+..++.
T Consensus 231 l~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-----------~pvLsiavs~-dd~t~vi 296 (487)
T KOG0310|consen 231 LTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-----------GPVLSIAVSP-DDQTVVI 296 (487)
T ss_pred hhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-----------cceeeEEecC-CCceEEE
Confidence 44332 26899999999999999999999999999999999999887754 3456777788 6689999
Q ss_pred EecCCcEEEEecCCCc
Q 001159 1089 GMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1089 g~~dg~v~~W~~~~~~ 1104 (1135)
|..||.+.+=+....+
T Consensus 297 GmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 297 GMSNGLVSIRRREVKK 312 (487)
T ss_pred ecccceeeeehhhccc
Confidence 9999998777554433
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.4e-26 Score=217.39 Aligned_cols=277 Identities=14% Similarity=0.224 Sum_probs=234.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee--eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
.+++|.+.|.+++|+.+|. .+++|+.|+++.+|++...+... ...+|.+.|-.++|+|... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 89999999999999998776554 3468999999999998765 79999999999999
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 605 (1135)
||++..++..........+ .+.|+|+|.+++++.. +..|...|.++.+.+...+... .+.-++|+.++.+++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988776655555 4789999999999864 6779999999888877665443 4677889888888888
Q ss_pred EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCC
Q 001159 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
....|.|.|......+++..++.|.. ...|+.|+|+|+++|+|+.|-.+.+||++.. -+.+.+.
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~is------------- 228 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCIS------------- 228 (313)
T ss_pred ecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHh-hhheeec-------------
Confidence 77889999999999999999998864 6789999999999999999999999998533 1111000
Q ss_pred CCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEee
Q 001159 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 766 LPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
.+ ..+|+
T Consensus 229 ------------------------------------------------------------------------Rl-dwpVR 235 (313)
T KOG1407|consen 229 ------------------------------------------------------------------------RL-DWPVR 235 (313)
T ss_pred ------------------------------------------------------------------------cc-cCceE
Confidence 03 77899
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001159 846 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg 905 (1135)
.+.||.||++||+|+ |-.|-|=++++|..+..++ +.++-..++|+| ...+||.++.|.
T Consensus 236 TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk 294 (313)
T KOG1407|consen 236 TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDK 294 (313)
T ss_pred EEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCC
Confidence 999999999999999 8889999999999999887 788899999999 889999988763
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-27 Score=223.46 Aligned_cols=270 Identities=11% Similarity=0.211 Sum_probs=217.9
Q ss_pred ecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccch
Q 001159 320 FAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
....|+....-..+...-.....+.-.+.+..|+||++....+++++.||+++|||+.....
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------ 95 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------ 95 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------
Confidence 33444433333334444566777778899999999999888899999999999999543221
Q ss_pred hhhhccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 400 QNALLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
|...++.|...|.++.|++ +++.+++++.|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|++
T Consensus 96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 2334788999999999999 56677888999999999999887666 78999999999999997766 8999999999
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCC-EE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l 556 (1135)
+++||++..-....+..|...|.++.|+..++ .+++||+.|+.|++||++..+. +..+.+|+-.|..++|||... .|
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 99999986544445889999999999986644 8999999999999999998664 557888999999999999764 56
Q ss_pred EEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEEC
Q 001159 557 FSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~ 617 (1135)
++++. |.++++||...+. .+.+...|.. -+..+.|++ ++.++++++.|+.++||+.
T Consensus 251 aSasY----DmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASY----DMTVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccc----cceEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 67765 8899999998554 4445554544 788899987 4578999999999999985
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-25 Score=219.40 Aligned_cols=249 Identities=16% Similarity=0.221 Sum_probs=209.8
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~ 917 (1135)
...|.++.|+++|.++++++ |.+|+|||..+++.++++..+...|..+.|.. ....+..++. |.+||..++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 67899999999999999988 78999999999999999998888899999987 4555555665 88999999999999
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec-C
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE-S 996 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-~ 996 (1135)
++-|.||...|++|+.+|-+..++|++.|++|++||+...+++....+ ..-..+||.|.|-++|++.+ +
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----------CCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999997765432221 12357899999999999644 4
Q ss_pred eEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCcc
Q 001159 997 QISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073 (1135)
Q Consensus 997 ~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
.|++||+ .......+....+-..+.+.+.|||||++|+.++..+.+++.|.-+|.....+..+. .....+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~~ 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNLP 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCcc
Confidence 9999999 334444444444447789999999999999999999999999999999988887553 122345
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~ 1108 (1135)
+.++|+| |++++++|+.||+|.+|++.++.....
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 7899999 889999999999999999999884443
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8e-26 Score=219.82 Aligned_cols=240 Identities=21% Similarity=0.289 Sum_probs=201.1
Q ss_pred CCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEccc
Q 001159 838 KPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 838 ~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~--~lasg~~dg~v~iwd~~~ 914 (1135)
.| .+.++++|. ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ... .|.+|++||.|.+|+...
T Consensus 41 aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 41 AH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 48 999999999 789999999 99999999999999999999999999999998 543 889999999999999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 994 (1135)
.+++..+++|.+.|+.|+.+|.+++.++.+.|+.++.||+-.++.-....+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999887433222221 235699999999999998
Q ss_pred cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCcc
Q 001159 995 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073 (1135)
Q Consensus 995 d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
.+.|-+|.+ +......... +..+.++.|- ++..|++|..|+.|.+||.+++.+++.+..|. ..+..
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--------~RVK~ 254 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--------NRVKD 254 (362)
T ss_pred ccEEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--------hheee
Confidence 999999999 4333333322 3457777764 56678999999999999999998888888663 33554
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+...-.| ++.+|+|++.||.|++||+....
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEccccc
Confidence 5444445 67899999999999999998763
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-27 Score=247.74 Aligned_cols=288 Identities=19% Similarity=0.262 Sum_probs=235.9
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
++..+..+.++|++|+.||.|++|++..-..... .+ -...+..|.++|+.++...+|+.|+++|.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 5555555545899999999999999875432111 00 0122567999999999999999999999999
Q ss_pred eEEEEEeCCCCceeeeeEeecccCCEEEEEE-ecCCCeEEEEEEcCCCcEEEEEcCCCe--eeee--------ec-CCCC
Q 001159 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYT--------FE-GHEA 498 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~--------~~-~h~~ 498 (1135)
+|++|+...+. ..+..++..|...|.|+++ .++.. ++||||-|+.|.+||+.++. .+.+ +. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 1233377889999999999 66666 89999999999999999873 2322 33 7888
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|++++.++.+ ..+++|+..+.+++||.++.+.+..+.+|...|.++..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999997755 89999999999999999999999999999999999999999999999986 9999999999999
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
++.++..|.. .|.++..+|+-..+++|+.||.|+.=|+.+......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999999853333332222 26777777765555577888999999
Q ss_pred EEcCC
Q 001159 659 LANSD 663 (1135)
Q Consensus 659 wd~~~ 663 (1135)
|...-
T Consensus 324 W~~~~ 328 (735)
T KOG0308|consen 324 WKLEP 328 (735)
T ss_pred cCCcc
Confidence 97643
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=223.65 Aligned_cols=253 Identities=15% Similarity=0.272 Sum_probs=207.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC------------CCc---eeeeeEeecccCCEEEEEEecCCCeE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TGE---LRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~------------~~~---~~~~~~l~~h~~~v~~v~~s~d~~~~ 468 (1135)
+..|++++.+.+|||||.++|+|+.|..|+|.|++. +.. --.+.++-.|...|+++.|.|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 567999999999999999999999999999999871 111 012346778999999999999998
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe---cCCCCc
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~ 543 (1135)
.|++|+.|++|++||.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++-..- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999987644333222 245689999999977 89999999999999999998876643 446779
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec-ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 88999999999999988864 5555799999999999999999999999999999999
Q ss_pred EEEEeCCCCC---CCcceEEEcCCCCEEEEEEC-CCcEEEEEcCCC
Q 001159 623 LTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 664 (1135)
+..+.+.+.. ..-+...|+....+++.-.. .+.+.-||.++.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998765322 12245567766666665543 567888888776
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-26 Score=246.77 Aligned_cols=261 Identities=17% Similarity=0.288 Sum_probs=226.2
Q ss_pred cccCCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccC-
Q 001159 329 VYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND- 406 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 406 (1135)
+|.|+...+....... +.+.|+++.|+++|. +||+|..+|.|.|||....+.+.. +.+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 4556666666555544 489999999999998 799999999999999988776654 445
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
|...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999998 78899999999999999998765543 3789999999999999999 899999999999999988
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEE--cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
...+..+..|.+.|.+++|+|-.. ..||+|+ .|++|++||..++..+.... .+..|.++.|++..+-|+++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 888999999999999999999876 5888874 79999999999766655443 5678999999999988886643 3
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999999999999999998 7999999999999999999999999998764
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.4e-26 Score=231.81 Aligned_cols=294 Identities=14% Similarity=0.224 Sum_probs=235.0
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecc----cccccchhhhhccCCCcceEEEEEcCC
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI----SAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.|.-+|+||+++||++ +.++++.+|+|.=|++.+|+.... +|.- .....+..... .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4899999999999998 688999999999999999985521 1111 00111222222 489999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
|+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999987766 6889999999999987666 6899999999999999999999999999999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|.++...... ..+..|+.|+++++|++ ..+....+.++.+.+-|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999765443 55556669999999999 45566678888889999999654 57778874 89999999999998
Q ss_pred EEEeecccC-----------CceeEEEecCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCcceEEEcCCC
Q 001159 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 580 ~~~~~~~~~-----------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
+.+....++ ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. .+.|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653321 16888999999999999999999999999876 44555543 3469999999999
Q ss_pred CEEEEE-ECCCcEEEE
Q 001159 645 SLLAVT-TSDNGIKIL 659 (1135)
Q Consensus 645 ~~l~~~-~~dg~i~iw 659 (1135)
+.+++| +....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 966665 333333333
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=237.41 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=211.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|..++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998876 233447778889999999999999 788999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+...+..++|.+|.+.|+++.|.-.. ..+++|+.|.+|++||+....+....- ....+..+..+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987665 459999999999999999876665433 23334444444 445566654
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCcceEEEc
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~ 641 (1135)
|+.|+.||.+++........+. .|+++..++++..+.+++.|.++.+.|+++.+....+..... ...++.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 7789999999999999888766 799999999999999999999999999999998888865421 2357899999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001159 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999888
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=246.79 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=209.0
Q ss_pred EEEEc-CCCCeEEEEeCCCeEEEEEeCCCCce---eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-
Q 001159 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1135)
Q Consensus 413 ~v~~s-pd~~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 487 (1135)
.+..+ |.+++|.+||.||.|++|++...... .....++.|...|.+++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 46778999999999999998764331 12346788999999999999998 7999999999999999877
Q ss_pred -eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--ee--------Eec-CCCCcEEEEEEcCCCCE
Q 001159 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~~~~~ 555 (1135)
-++.++..|.+.|.|+++-. .+...+++|+.|+.|.+||+.++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 67888999999999999832 2337999999999999999997633 11 122 56678999999999988
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+++|+. ++.|++||.++++.+..+.||.+ .|.++..++||..+++++.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 77799999999999999999998 899999999999999999999999999999999999988866 69
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++..+|+-..+.+|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888775
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-26 Score=252.90 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=209.6
Q ss_pred ccccceEEEEEEecCCcceeEecccceeeeEEeccccC------C-----------------------CCCccccc----
Q 001159 770 IAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N-----------------------PSGKATAN---- 816 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~------~-----------------------~~~~~~~~---- 816 (1135)
.|.+.| .++.|++||++|++++.|+.|+||.+...+. . ..++....
T Consensus 265 ah~gaI-w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAI-WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcE-EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 588999 9999999999999999999999999876110 0 00000000
Q ss_pred --ccCeeecCCCC---cceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 817 --VAPQLWQPPSG---TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 817 --~~~~~~~~~~~---~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
..+ +....-. ......+.| | ...|..+.||.++- |++++ |.+|++|++...+|++.|. |.+-|||++|
T Consensus 344 ~s~~~-~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 344 QSPCV-LLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred CCccc-cCCCccccccccchhhhhc--c-chhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 000 0000000 011112444 8 99999999998765 55555 9999999999999999998 9999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCC
Q 001159 891 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 970 (1135)
Q Consensus 891 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 970 (1135)
+|-|.+++++|+-||.||||++...+.+.-...+ +-|++++|+|||+..+.|+-+|.+++|+....+......+....+
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 9999999999999999999999988766544444 789999999999999999999999999999888766666655554
Q ss_pred CCCCCCCceEEEECCCCc--EEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 001159 971 RQSPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 971 ~~~~~~~v~~~~~s~dg~--~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~ 1047 (1135)
.......|+.+.|.|... .|+++.|..|+|||. +...+..+..... ...-....|+.||++|+++++|..|+||+.
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 443334699999987654 888899999999999 5666666554432 334467889999999999999999999998
Q ss_pred CCc
Q 001159 1048 ETL 1050 (1135)
Q Consensus 1048 ~~~ 1050 (1135)
+..
T Consensus 576 ~~~ 578 (712)
T KOG0283|consen 576 DSF 578 (712)
T ss_pred CCC
Confidence 543
No 99
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.3e-25 Score=251.02 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=198.1
Q ss_pred EeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCc-
Q 001159 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1135)
Q Consensus 365 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~- 442 (1135)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 5567788888876543332 26789999999999996 78999999999999999986432
Q ss_pred e----eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE
Q 001159 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 443 ~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s 518 (1135)
. .....+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+. |...|.+++|+|++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122357789999999999999874 56899999999999999998887776 66789999998865 8999999
Q ss_pred cCCeEEEEeCcCCCceeEecCCCCcEE-----EEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCC-ce
Q 001159 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1135)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1135)
.|+.|++||++++.....+.+|.+.+. ...|++++.+|++++.++..+++|++||+++ ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999988888888876543 2345689999999887554457899999995 5666655443321 22
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
......+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 333334568888999999999999998764 3444433344577889999964
No 100
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.7e-26 Score=258.01 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=230.7
Q ss_pred cceEEEEEEecCCcceeEec--ccceeeeEEeccccCCCCCcccccccCeeecCC-CCcceeccCCCCCCCCCceEEEEe
Q 001159 773 SKVVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPP-SGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
..| .++..+|||..+++|+ .||.+++|+...--. ....++.. .+.+. .-..| .+.|.|+.|
T Consensus 14 ~~I-fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~----~m~~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 14 KSI-FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC----TMDDH-DGSVNCVRF 77 (942)
T ss_pred eeE-EEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe----eeccc-cCceeEEEE
Confidence 335 8999999999999999 799999997642110 00111211 11111 11237 999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCC------------------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 910 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~------------------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iw 910 (1135)
+|||++||+|+ |+.|.||+... ++++..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 67899998762 246788999999999999999 89999999999999999
Q ss_pred EcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEE
Q 001159 911 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 990 (1135)
Q Consensus 911 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 990 (1135)
+..+.+.+.++.+|.+.|-++.|.|-|+++||-+.|++|+||++.+....+ .+..+..+.........+.|||||.+|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999987765332 233333333333456889999999999
Q ss_pred EEE--e---cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeC-----CC------------EEEEEeCCCeEEEEEC
Q 001159 991 LVV--H---ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCD-----GL------------LVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 991 ~~~--~---d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d-----~~------------~l~~~~~dg~I~vwd~ 1047 (1135)
++. - ...+.|.+- +.+.-..+ -+|.+++.+++|+|. .+ .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~L---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDL---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeee---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 2 245666665 22222222 356889999999871 11 6889999999999999
Q ss_pred CCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1048 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
...+++..+. ..+ . -..+-++|+| ||..|+.++.||+|.+..+...+
T Consensus 312 ~~~RPl~vi~--~lf-----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIH--NLF-----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhh--hhh-----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 8877775443 111 1 3456788999 88999999999999999987655
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=225.69 Aligned_cols=282 Identities=15% Similarity=0.217 Sum_probs=245.0
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..++++...|... .+.+|+.|..+.++|..+++.+.. +.||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788999999854 688999999999999998887764 89999999999999999999999
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC--CCCCeeEEE
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~ 504 (1135)
+.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766443 5678999999999999999 899999999999999999998876653 234589999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|||++ ..+.+|..||.+++||+.+......+.+|.++|..++|+.+|-+|+++.. |+.|++||++.-+..+++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99965 89999999999999999999999999999999999999999999999974 7779999999999888888
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
......+.+++|++.|.+++.++.|=+|++++-.+.. ++..+..+ .+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 7776679999999999999999888777777755443 34444433 346789999999999999999999888754
No 102
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.9e-25 Score=251.28 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=204.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce----------eeeeEeecccCCEEEEEEec-CCCeEEEEEEcC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~ 475 (1135)
+-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4455677777888888888888887778876554322 11224779999999999999 777 8999999
Q ss_pred CCcEEEEEcCCC-------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
|++|++||+.++ ..+..+.+|...|.+++|+|..+ .+|++++.|++|++||+++......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999999743 6899999999999999999888888888999999999
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCc-eE
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1135)
|+|+|.+|++++. |+.|++||+++++.+..+.+|....+..+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999975 889999999999999999988764556678899888888754 47899999998754 44
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 664 (1135)
.....+. ...+....|++++.+|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 4443332 22455677899999999887 4999999999887
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.9e-26 Score=233.75 Aligned_cols=301 Identities=17% Similarity=0.225 Sum_probs=234.8
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
|+.+-..++ |+..|.++++.|.|-+ +++|+.|-.|++||+........ .|+ .+.......|+++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCccccccccee
Confidence 455555666 6788999999999985 88999999999999986543221 122 1233456679999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCce---------eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGEL---------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~---------~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.||+.|..|++.+....++|+|-+..... .....-.||...++|.+|.|+.+. .++|++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 99999999999999999999997654322 222334689999999999999888 79999999999999998
Q ss_pred CCee-eeeec-----CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce---eEecCCCC--cEEEEEEcCCCC
Q 001159 486 AGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~s~~~~ 554 (1135)
..+. +..++ +..-++++++|++++ ..|++|+.||.|.+|+....... ..-.+|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6542 22232 344578899998755 88999999999999997554332 23455655 899999999999
Q ss_pred EEEEEecCCCCCCeEEEEECCCCe-EEEEeecccC-CceeEEEecCCCCEEEEEe------CCCeEEEEECCCCceEEEE
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|++-+. |.++++||++..+ ++.+..+... ..-+.++|||+.+.|++|+ ..|++.+||..+.+.++.+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9999875 8899999998643 4555444322 1346689999999999976 4578999999999999999
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.... ..|..+.|+|.-+.|.+|+.||++++|-
T Consensus 454 ~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence 8763 3788999999999999999999999974
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=251.77 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=210.1
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56778888887 67899999999999999999876552 3889999999999987455 899999999999999999
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
|.+.+.+.+|...|.++...+ ..+++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999998644 678899999999999999999999999999999999988 789999986 7
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
+.|.+||+.++++++++.+|.. .|.++.+... +++++|+.|++|++||+.+. +++.++.+|.. .|..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7999999999999999999888 8999988765 89999999999999999999 89999988755 344443 4577
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001159 646 LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|++++.|++|++||..++
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred eeEeccccccEEEeecccC
Confidence 9999999999999998877
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.9e-26 Score=218.46 Aligned_cols=297 Identities=16% Similarity=0.204 Sum_probs=245.2
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
...+.+.+. |.+.|+.++-....+ ++.+++.|.+.+||.+++|.++.+ +.||.+.|+++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsi 196 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSI 196 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeE
Confidence 345566666 999999999988887 899999999999999999999876 78999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEe------CC------------------------------C-CceeeeeEeecccCCEE
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTY------NP------------------------------T-GELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~------~~------------------------------~-~~~~~~~~l~~h~~~v~ 457 (1135)
+|++.+.++++++.|++..||.. .. + ..-.+...+.+|.+.|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 99999999999999999999962 11 0 00113456889999999
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC-ceeE
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVD 536 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~ 536 (1135)
+..|...|+ .+++++.|.+..+||+++|..+..+.||....+-++-+|.. .++++.+.|.+.++||++..- .+..
T Consensus 277 a~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 277 ACDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred ehhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeee
Confidence 999999999 68999999999999999999999999999999999998876 899999999999999998433 3457
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
+.+|...|+++.|..+. .+++++. |.+|++||+++.. ++.++.... +++.++.+..+..|+.--.+..|++|
T Consensus 353 FQGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred ecccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEE
Confidence 89999999999998765 5666653 8899999998754 556666543 68889998877788888888999999
Q ss_pred ECCCCceEEEEe---CCCCCCCcceEEEcCCC--CEEEEEECCCcEEEEEcCCC
Q 001159 616 DMDNMNMLTTVD---ADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 616 d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++... +..+. -.++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 426 DlnG~R-laRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNR-LARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCc-cccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 998544 33332 22345579999998654 35788999999999998754
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=217.74 Aligned_cols=331 Identities=12% Similarity=0.211 Sum_probs=250.7
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
++++.+.||.+ .|..++.......+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 45677888888 788888877777888899999999999999999999998865 899999999999999999999999
Q ss_pred EEEcCCCchhhhhc--cccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccc
Q 001159 658 ILANSDGVRLLRML--EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 658 iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
||...-.-+..+.. .+|...
T Consensus 216 IW~~av~~~vP~~~a~~~hSsE---------------------------------------------------------- 237 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSE---------------------------------------------------------- 237 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCch----------------------------------------------------------
Confidence 99743221100000 000000
Q ss_pred cccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccc
Q 001159 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 815 (1135)
... -.+|. |... ..-....||. +|++
T Consensus 238 eE~--e~sDe-------------------------~~~d--~d~~~~sD~~---------tiRv---------------- 263 (481)
T KOG0300|consen 238 EEE--EHSDE-------------------------HNRD--TDSSEKSDGH---------TIRV---------------- 263 (481)
T ss_pred hhh--hcccc-------------------------cccc--cccccccCCc---------eeee----------------
Confidence 000 00000 0000 0000011111 2221
Q ss_pred cccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCC
Q 001159 816 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||+++++.+..+.||..+.+.++-+| .
T Consensus 264 --------------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-t 325 (481)
T KOG0300|consen 264 --------------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-T 325 (481)
T ss_pred --------------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-c
Confidence 1111333 7 89999999999999999999 99999999999999999999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC
Q 001159 895 NNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 973 (1135)
.+++++.+.|.+.++||.... ..+..|+||.+.|+++.|.-|. .+++++.|.+|++||+.+-... +....
T Consensus 326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----lATIR---- 396 (481)
T KOG0300|consen 326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----LATIR---- 396 (481)
T ss_pred ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----ceeee----
Confidence 999999999999999998843 4567899999999999998665 6889999999999999874421 21111
Q ss_pred CCCCceEEEECCCCcEEEEE-ecCeEEEEecCCceeeccC--CCCCCCCCEEEEEEeeCCC--EEEEEeCCCeEEEEECC
Q 001159 974 PLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 974 ~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~i~~~~~s~d~~--~l~~~~~dg~I~vwd~~ 1048 (1135)
...++..++.+-.+..++.- .++.|++||+++..+..++ ...+|..-|+|++|+.+.- -|++++-|..+.=|.+.
T Consensus 397 tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 397 TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 11567899999999999994 6688999999988887776 5578899999999986643 48888999999999987
Q ss_pred Cc
Q 001159 1049 TL 1050 (1135)
Q Consensus 1049 ~~ 1050 (1135)
+.
T Consensus 477 ~p 478 (481)
T KOG0300|consen 477 TP 478 (481)
T ss_pred cc
Confidence 53
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.1e-25 Score=213.24 Aligned_cols=278 Identities=17% Similarity=0.213 Sum_probs=221.3
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+++|++...|.=+++.-...-..... .| .-.+.-.+..|.++|+++|. ++.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~-~~------~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSV-KP------TLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccccccc-ce------eeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 45677777776666643221000000 00 01122336789999999999 68999999999999999999987
Q ss_pred ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC
Q 001159 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1135)
Q Consensus 442 ~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg 521 (1135)
++. .+-.|.+.|+++.|.++-....|++|++||.|.+|+...-.++.++++|.+.|+.+++||++ ++.++.+.|+
T Consensus 75 qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~ 149 (362)
T KOG0294|consen 75 QLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQ 149 (362)
T ss_pred hhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCc
Confidence 665 66789999999999987643368999999999999999999999999999999999999987 8999999999
Q ss_pred eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC
Q 001159 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 522 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
.++.||+-.++.-..+..... .+.+.|+|.|.+++.++ ...|-+|.+.+.+....+.... .+.++.|. ++.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-----RNKIDIYQLDNASVFREIENPK--RILCATFL-DGS 220 (362)
T ss_pred eeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-----ccEEEEEecccHhHhhhhhccc--cceeeeec-CCc
Confidence 999999998877665554333 23489999999888876 5569999998877766655442 46666665 567
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE--cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+++|++|+.|.+||.++..+...+..|.. .|.++.+ .|++.+|++++.||.|+|||+...
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 899999999999999999999999988755 7888874 467899999999999999999765
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=4.2e-25 Score=236.73 Aligned_cols=283 Identities=15% Similarity=0.291 Sum_probs=240.2
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE-E
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v 414 (1135)
+++.+.+. |...|..+++.+.. .+++++.||++++|+-..++.+.+ +.+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 45666777 99999999988887 477899999999999876655432 225678888888 8
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
++-+ ++-.|++|+.|+.|.+|.......+. .|.+|...|.+++...++. ++|||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55569999999999999999887655 8899999999999877774 89999999999997 46677789
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|+..|++++..|. +.++|||.|++|++|. .++...++.+|...|..+++-+++.+ ++|+ +||.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-Eeec----CCceEEEEe
Confidence 999999999998876 4899999999999994 46788899999999999999887654 4554 499999999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+ +|..+..+.+|.. -+.+++...++..++++++|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|++|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 8 7999999999998 89999988888999999999999999987 77888876644 689999988886 6678899
Q ss_pred CcEEEEEcCC
Q 001159 654 NGIKILANSD 663 (1135)
Q Consensus 654 g~i~iwd~~~ 663 (1135)
|.||||....
T Consensus 280 G~VrVfT~~k 289 (745)
T KOG0301|consen 280 GRVRVFTVDK 289 (745)
T ss_pred ceEEEEEecc
Confidence 9999998763
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.5e-24 Score=195.36 Aligned_cols=307 Identities=13% Similarity=0.088 Sum_probs=224.7
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
....| .+++|+|.|...++++...++++...+.-.....+...+. .......+...|..+.|.|.+||
T Consensus 31 dsqai-rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~-----------~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 31 DSQAI-RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK-----------QPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred chhhe-eeEEecCCCceEEeccCCceEEEEccccccCccccccccc-----------CCCeEEeeeccccCccEEEEEec
Confidence 44556 9999999999999999999999875432111000000000 00000111122339999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccE-----EEEEeCCCCCeEEEEEecC---CCcEEEEEeC-CCcEEEEEcccceeeEE
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGME-DSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~sp~---~~~~lasg~~-dg~v~iwd~~~~~~~~~ 920 (1135)
|+|+++|+|+ |.+|++.......+ -..|.-|.+.|..++|-.+ ++.+|++++. |..|++-|..+|+..+.
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999 88999876654322 2346779999999999642 4678888764 77899999999999999
Q ss_pred ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEE
Q 001159 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQIS 999 (1135)
Q Consensus 921 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~ 999 (1135)
+.+|.+.|.++- +-+|-++++++.|.+|++||+.-..++...-.....+. .....|..++..|.|++|+++ .|....
T Consensus 179 ~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 179 LSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred ecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCCCceE
Confidence 999999998873 44688999999999999999987664432211111111 011578999999999999997 688899
Q ss_pred EEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEe
Q 001159 1000 VYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAP 1078 (1135)
Q Consensus 1000 vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
+||+ .++.+..+. .|...|.++.|||...||++++.|..|++-|+. |.+..++...- ...+...++.+.|
T Consensus 257 lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~v-----v~ehkdk~i~~rw 327 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMV-----VAEHKDKAIQCRW 327 (350)
T ss_pred EEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEE-----EEeccCceEEEEe
Confidence 9999 566666654 458999999999999999999999999999998 44443333111 1133467788999
Q ss_pred cCCCCCEEEEEecCCcEEEEecC
Q 001159 1079 HPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1079 ~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+|.+ --+++.+.|.++.+|-++
T Consensus 328 h~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred cCcc-ceeeeccCcceEEEeccC
Confidence 9965 677888999999999764
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=225.68 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=214.5
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeee--------------eEe-ecccCCEEEEEEecCCCeE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~v~~v~~s~d~~~~ 468 (1135)
...|.-+|.+++++||+++.++++.+++|.=|++.+++..+.. ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 4569999999999999999999999999999999887643110 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|--.. ..+++++.|++|++|+++....+.++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999997554 6899999999999999999888889999999999998
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...-++.+-+++. |+++++|++.. ...-.|.++.+ .+.|++|-. ...+++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888777777765 88999999953 33345667665 889999875 46899999999999999999998877643
Q ss_pred CCCC----------CCcceEEEcCCCCEEEEEECCCcEEEEEcCCCch
Q 001159 629 DGGL----------PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 629 ~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
..+. ..|++++..|...++++|+.+|.|++|-+.++..
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 2111 1578999999999999999999999999988843
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=210.87 Aligned_cols=253 Identities=19% Similarity=0.238 Sum_probs=187.2
Q ss_pred EEEEEecCCcceeEec-ccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
+.++|+||-+.+++.. ....+++|.+..... |..... ..-||-. .....| .-.+..+-...++++
T Consensus 136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--------~f~~kh-~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--------EFERKH-QVDIINIGIAGNAKY 201 (420)
T ss_pred eEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--------ccchhc-ccceEEEeecCCceE
Confidence 8899999988776554 467899997754322 221111 1112210 001125 667777888889999
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---c-----eeeEEecCcCC
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---D-----EVKTKLKGHQN 926 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~~ 926 (1135)
|++++ |.+|.+|++. |+.+..+......-+..+.|| +|++||+++-.-.|++|.+-- | ..+..|+||..
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999 8899999998 899999887777788899999 999999999999999998652 2 23456889999
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceec--eeeeecC--CCCCCCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
.|..++||++...++|+|.||+++|||++-.-... ...+... .-+. .......++++|.|+.||++....+++|.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 99999999999999999999999999986321111 1111111 1111 11344589999999999999999999999
Q ss_pred c-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1003 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1003 ~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
. +++....+. +.|+..|++++|++||++++++ .|..++++.-..
T Consensus 359 se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atc-Gdr~vrv~~ntp 403 (420)
T KOG2096|consen 359 SEDGKDYPELE--DIHSTTISSISYSSDGKYIATC-GDRYVRVIRNTP 403 (420)
T ss_pred cccCccchhHH--HhhcCceeeEEecCCCcEEeee-cceeeeeecCCC
Confidence 9 666555443 4579999999999999999987 578888876433
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.9e-25 Score=211.01 Aligned_cols=248 Identities=16% Similarity=0.181 Sum_probs=196.3
Q ss_pred CCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 406 DAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
...+.|.+++||| ...+++.++.||+|++|+++....... .....|.++|.+++|+.||. .+++|+-|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEEc
Confidence 4677899999999 555677889999999999987433322 35567999999999999998 8999999999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
.+++ +..+..|.++|.++.|.+...-..|+|||.|++|+.||++....+..+..++ .++++..- ...++++..
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata--- 174 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATA--- 174 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEec---
Confidence 9994 5677789999999999887766789999999999999999888887776654 34444332 234555543
Q ss_pred CCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCC-------CCC
Q 001159 565 GESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LPA 634 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~~ 634 (1135)
++.|.+|+++.+.. .+.....-.-.++|+++..|....+.|+-+|.+.|..++.+ +.-.+++.|.. .-.
T Consensus 175 -~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 -ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred -CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 77899999976543 23333333446899999999988899999999999999886 33345555542 225
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++++|+|....|++++.||++.+||-+..
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhh
Confidence 788999999899999999999999997655
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.7e-26 Score=226.89 Aligned_cols=287 Identities=13% Similarity=0.185 Sum_probs=233.1
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
+..|. |.+.|.|++=+|..-..+|+|+.||.|+|||+....+..+ +..|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 44445 8999999999999855799999999999999998877664 778999999999987
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
..+++++.|.+|+.|.++.. ..+ ++. ....+..+.-+..+. .++|||.+ |.|||.....++..+.-...
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCce--eeecccccCCccceeecCCC
Confidence 77889999999999998873 222 333 244566677666666 78999864 89999998889999988888
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG- 577 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~- 577 (1135)
.|.++.|+|... ..|++|+.|+.|.+||++...++..... .-..+.++|+|.+-.++++. +|..++.+|++.-
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999865 7888999999999999999887664332 22456789999666666664 4888999999864
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.++..+.+|-. .|..++|+|.|+.+++||.|.+|+||.++.+.....+-. .....|.|+.|+.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCccee
Confidence 46777888877 899999999999999999999999999987654433321 1233689999999999999999999999
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
+|.....
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987544
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-21 Score=216.85 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=225.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc-cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
|...-+.++|.|+|. ++.+++.||.|++|+...- +.... +.-+...|.+++. ++.+|
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--cccce
Confidence 777899999999999 6788889999999998765 22211 2227777888877 45599
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++|+.+++|.+|.+.++..-. .+....-++.+++|+.+|+ ++|.||+|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999876543 3444567899999999999 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC--------CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.|+|.+ .+|++.+.||.|++||++++.....+..- ...+..++|+|+|..+++... ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 999866 89999999999999999987766544331 235678899999766666554 8889999999
Q ss_pred CCeEEEEeecccCC-ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 576 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
++.....+...... .+..++|+|+|.||++++.||.|.|||+++.+. |.....|.+++|.|+...+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988888764432 388999999999999999999999999998322 33445799999999988776666666
Q ss_pred cEEEE
Q 001159 655 GIKIL 659 (1135)
Q Consensus 655 ~i~iw 659 (1135)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 65555
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.7e-24 Score=207.04 Aligned_cols=269 Identities=19% Similarity=0.267 Sum_probs=216.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
..+.|+.|.|+|.+..|| +++.||++++||+....... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LL-vssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLL-VSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEE-EEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 457899999999998555 56799999999998774432 234899999999987 56789
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.||.|+.+|+.++... .+..|..+|.||.+++... .+++||.|++|++||.+.......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999997654 4678999999999998777 79999999999999998765555554 334788886
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC--CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC----e
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----A 578 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 578 (1135)
. .|+.|+.|+.|..+.+||+++......... -.-.+.|+++.|++.-.++++. +|.|.+=.+... +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 337899999999999999998776553222 2337889999998877777765 777776655544 3
Q ss_pred EEEEeecccC--------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 579 IKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 579 ~~~~~~~~~~--------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
....|+.|.. -+|++++|+|-.+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4456666653 26899999999999999999999999999999888887654 3369999999999999999
Q ss_pred EC
Q 001159 651 TS 652 (1135)
Q Consensus 651 ~~ 652 (1135)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.5e-24 Score=218.03 Aligned_cols=239 Identities=17% Similarity=0.259 Sum_probs=215.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..|.++...|....+++|+.|..+.++|..+++.+. .+.||...|+++.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 458888888888899999999999999999987666 7899999999999999998 89999999999999998888
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+......|+.+|+.+..+|++ .||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. |
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred CccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 888888999999999999976 89999999999999999999887766553 347899999999999998875 8
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
+.|++||+.++..+..|.+|.+ +|..++|+.+|-+++++++|+.|++||++..+..+++...... .|.++.|.+.|.+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 9999999999999999999888 9999999999999999999999999999999999998876654 7999999999999
Q ss_pred EEEEECCCcEEEEE
Q 001159 647 LAVTTSDNGIKILA 660 (1135)
Q Consensus 647 l~~~~~dg~i~iwd 660 (1135)
|+.++.|=.|++++
T Consensus 447 L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 447 LGIAGSDLQVYICK 460 (506)
T ss_pred EEeecceeEEEEEe
Confidence 99998776666655
No 117
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.2e-23 Score=238.50 Aligned_cols=228 Identities=14% Similarity=0.214 Sum_probs=183.4
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC-CCeEEEEEEcCCCcEEEEEcCCCe--------eeeeecCC
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h 496 (1135)
|+.++.|++|+...... ...+.+|.+.|.+++|+|+ +. +|+||+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 56688899999876543 3478899999999999997 56 89999999999999997642 34567899
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
...|.+++|+|... .++++++.|++|++||+++.+....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999999752 456899999999999999888766665 4568999999999999998864 78899999999
Q ss_pred CeEEEEeecccCCc----eeEEEecCCCCEEEEEeCCC----eEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEE
Q 001159 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~i~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l 647 (1135)
++.+..+.+|.+.. +....|+++++++++++.|+ .|++||++. .+++..+..+.....+......+++.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677776655443333334445568899
Q ss_pred EEEECCCcEEEEEcCCC
Q 001159 648 AVTTSDNGIKILANSDG 664 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~ 664 (1135)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
No 118
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-22 Score=222.83 Aligned_cols=511 Identities=14% Similarity=0.173 Sum_probs=328.5
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCe-EEEEEEcCCCcEEEEEcCCCeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
..-.||+|+++++.+.. ..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||+|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34568999999887755 569999999998877 78899999999999987663 47889999999999999999999
Q ss_pred eeecCCCCCeeEEEeecc------------CCccEEEEEEcC--CeEEEEeCcCCCce-eEecCCCCcEEEEEEcCCCCE
Q 001159 491 YTFEGHEAPVYSVCPHHK------------ESIQFIFSTAID--GKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~------------~~~~~l~s~s~d--g~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
+++..+ .++.++.+.|. .+-..+.+.+.+ ++++-+.+.+.... ..+......-.++.+++.|.+
T Consensus 96 kt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 888643 33333333111 111111111111 11111111111100 001111111456788888887
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEE---EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC--CceEEEEeCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADG 630 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 630 (1135)
...+. +..+.+|+..++... +....++...+++.+++|++++++++..||.|.+|.--. ......-..|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77664 556899998875511 112223333578999999999999999999999996433 22222222334
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCC
Q 001159 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1135)
Q Consensus 631 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 710 (1135)
|...|.+++|+++|.+|.+|+..|.+.+|...++.+ ++-..
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k---qfLPR------------------------------------ 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK---QFLPR------------------------------------ 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCc---ccccc------------------------------------
Confidence 455899999999999999999999999999988831 11100
Q ss_pred CCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeE
Q 001159 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLA 790 (1135)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~ 790 (1135)
-...| ..+.++||+....+
T Consensus 291 ------------------------------------------------------------Lgs~I-~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 291 ------------------------------------------------------------LGSPI-LHIVVSPDSDLYSL 309 (792)
T ss_pred ------------------------------------------------------------cCCee-EEEEEcCCCCeEEE
Confidence 12334 88999999999999
Q ss_pred ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEEC
Q 001159 791 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 869 (1135)
Q Consensus 791 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~ 869 (1135)
..+|+.|.+-........ . .+.-..+.+... ..+. .+-.+.++++|.-+.++..+ .|.|.+||+
T Consensus 310 ~~~DNqI~li~~~dl~~k------~--tIsgi~~~~~~~------k~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIK------S--TISGIKPPTPST------KTRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EecCceEEEEeccchhhh------h--hccCccCCCccc------cccc-cccceeEEEcCCCCceeecCCCceEEEEec
Confidence 999999988765321110 0 010001111100 0012 56677899999555555555 899999999
Q ss_pred CCccEEEEEeC-----CC------CCeEEEEEecCCCcEEEEEe--------CC--CcEEEEEcccce----eeEE-ecC
Q 001159 870 MTFKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------ED--SSVQIYNVRVDE----VKTK-LKG 923 (1135)
Q Consensus 870 ~~~~~~~~~~~-----h~------~~v~~l~~sp~~~~~lasg~--------~d--g~v~iwd~~~~~----~~~~-l~~ 923 (1135)
.+.+.+..+.. +. -.+++++.+- .|.+++|+- .| -.+++|-..... +... ...
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P 453 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP 453 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC
Confidence 88776655431 22 2478888888 699999874 23 357889765432 2222 347
Q ss_pred cCCCeEEEEEcCCC--CeEEEEcCCCcEEEEeCCCCceec-----eeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 924 HQNRITGLAFSPTL--NALVSSGADAQLCMWSIDKWEKLK-----SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 924 h~~~i~~l~~s~d~--~~l~s~~~D~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
|...+.+.+|.+.. ..++|++.||.++||-+...+.+. ..+.....-|. .+++.++|+.||..|+++.++
T Consensus 454 H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 454 HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCC
Confidence 88887777775532 379999999999999884433221 11222221122 678999999999999999999
Q ss_pred eEEEEec-CCceeeccCCCCCCCCCEEEEEEee----CCCEEEEEeCCCeEEEEECCCceeeee
Q 001159 997 QISVYDS-KLECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 997 ~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~----d~~~l~~~~~dg~I~vwd~~~~~~~~~ 1055 (1135)
.|.+||. +...+....... ..++..+.|.. ++.+. ........+|++-+..+.-.
T Consensus 531 ~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 531 TITIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGALV--HATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred EEEEecCCChhhhhcccccc--ccchHhHhhhccccccccee--eccCceEehHhhhhhheecc
Confidence 9999999 423322222111 33444444432 33332 33567899999998877763
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.4e-24 Score=206.28 Aligned_cols=221 Identities=13% Similarity=0.148 Sum_probs=156.1
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-----ceeeeeEeecccCCEEEEEEecCCCeEEEEEEc
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~ 474 (1135)
....+++|...|++++||.||++||+++.|+.|++|+++.-. +++....+ +.-+.+.|+||-+. +++++-
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEc
Confidence 334588999999999999999999999999999999997632 12221111 23578999999986 566777
Q ss_pred CCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 475 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
...++++|-+...+. -.+.-|.-++-.+.| . ..|...+..+-...++.
T Consensus 153 ~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f-----------------------~--------~kh~v~~i~iGiA~~~k 200 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD-GSGSHHFVHIDNLEF-----------------------E--------RKHQVDIINIGIAGNAK 200 (420)
T ss_pred cCCEEEEEEeeeccc-CCCCccccccccccc-----------------------c--------hhcccceEEEeecCCce
Confidence 777899987543221 111111111111111 0 11333444555667778
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC---Cc---eEEEEeC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---MN---MLTTVDA 628 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~ 628 (1135)
+|++++. +..|.+|+++ |+.+..+..... .-...+.||+|+++++++..-.|++|.+-- |+ ....+..
T Consensus 201 ~imsas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 201 YIMSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred EEEEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 8888875 6679999988 888887776554 456688999999999999888899998642 21 2233334
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.++...|..++|+++...+++.+.||+++|||++-
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 44456899999999999999999999999999854
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2e-24 Score=221.61 Aligned_cols=265 Identities=15% Similarity=0.262 Sum_probs=216.8
Q ss_pred eeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+....+.|.++|+.+.+-|..+.++|+++..+.|.|||+.+-...... .....+...+.||...-++++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 345556699999999999999999999999999999998764332210 00112334588999988899999
Q ss_pred CCCC-eEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC--CCeee
Q 001159 418 PDGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQ 490 (1135)
Q Consensus 418 pd~~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~ 490 (1135)
+... .|++++.|++|++||+..... +.....+.+|...|..++|++-... +|+++++|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 9544 789999999999999986543 5566678999999999999997776 79999999999999999 56666
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEE-EEecCCCCCCe
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESH 568 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~~~~ 568 (1135)
+...+|.++|+|++|+|.+ +..|+|||.|++|.+||+++... ...+..|...|.++.|+|....++ +++. |+.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~r 340 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRR 340 (422)
T ss_pred ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCc
Confidence 7788999999999999986 48999999999999999998765 568899999999999999876554 5543 889
Q ss_pred EEEEECCCC--------------eEEEEeecccCCceeEEEecCCCCEE-EEEeCCCeEEEEECC
Q 001159 569 LVEWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD 618 (1135)
Q Consensus 569 i~~wd~~~~--------------~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~ 618 (1135)
+.+||+..- +++....||.. .|..+.|+|+..++ ++.++|+.+.||...
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999641 23466677777 89999999998765 457899999999876
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=8e-25 Score=224.76 Aligned_cols=293 Identities=14% Similarity=0.201 Sum_probs=236.7
Q ss_pred eeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+.+.+|.|+.-|.++++|...+ .+.||+ .|.|+|||+....... +...--.......|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 3477888999999999999998 477776 6899999997542210 00000012356779999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1135)
|||+.|++|+.-.++.|||+...... ...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 99999999999999999999876432 2223444445678899999999 88899999999999999999999999999
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
+.+.||.+++ +|..|.+|+.|++||.||++.+....... ....|.++.++|++.+|++|-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999976 45899999999999999999877665433 3457999999999999999975 6667776643 4
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.....+..|.. .|.++.|.+.|+++++.+.|..+..|...-|..+...+. ...|.++.++.|.++|++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 44455666666 899999999999999999999999999988877665543 34799999999999999999999888
Q ss_pred EEEc
Q 001159 658 ILAN 661 (1135)
Q Consensus 658 iwd~ 661 (1135)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.5e-25 Score=220.10 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=166.0
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEe
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd 527 (1135)
.|.||...|.|++=.|..-. .++||+.||.|+|||+....+..+|..|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998733 799999999999999999999999999999999999865 5689999999999998
Q ss_pred CcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCE-EEEE
Q 001159 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 606 (1135)
Q Consensus 528 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~-l~~~ 606 (1135)
++.. ...++ .....+..+.-+..+..+++||. .|.|||.....+++++.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceee-eccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7753 22222 23345566666667778888864 599999999999999987777 8999999998754 5556
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.|+.|.+||++.+.++..+.... .-+.++|+|.+-.+++|+.|..+..+|+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhh
Confidence 799999999999999988876543 3578999998888999999999999988654
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=203.99 Aligned_cols=252 Identities=20% Similarity=0.293 Sum_probs=210.2
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec--CCCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~i 481 (1135)
-..|.+.|..+...--|++||+|+.|++|+|+.+..+.......+|.||.++|+.++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 457999999999888999999999999999999998877667779999999999999987 677 9999999999999
Q ss_pred EEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCC---C
Q 001159 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1135)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~---~ 553 (1135)
|.-.+|+ ..+.+..|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9977774 345667899999999999999999999999999999999887622 3356778889999999986 4
Q ss_pred -----------CEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCCceeEEEecCCC----CEEEEEeCCCeEEEEE
Q 001159 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~i~~s~~~----~~l~~~~~dg~i~iwd 616 (1135)
+.|++++. |..|++|+...++ .-+++.+|.+ .|+.++|.|.- .+|++++.||+|.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888886 8889999988764 3456888988 89999999964 5799999999999998
Q ss_pred CCCC-ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.+.. +.-..--.+.....+..+.|+..|+.|++++.|+.+.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111122233468999999999999999999999999743
No 124
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.7e-22 Score=219.94 Aligned_cols=509 Identities=15% Similarity=0.190 Sum_probs=324.8
Q ss_pred EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc-cEEEEEEcCCeEEEEeCcCCCcee
Q 001159 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 457 ~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 535 (1135)
..-.|++|++ +++.+. +..|.||...+|.++..+.+|..++.++.+.|.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457899998 444443 568999999999999999999999999999988754 578899999999999999888777
Q ss_pred EecCCCCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCCCeEE-----EEeecccCC------ceeEEEecCCCC
Q 001159 536 DYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIK-----RTYSGFRKR------SLGVVQFDTTRN 601 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-----~~~~~~~~~------~v~~i~~s~~~~ 601 (1135)
.+..+.. +..+.+.| +-...+..+. +....+........... .++..+... .-.++.+++.|.
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 6665433 22333322 1111221110 00011111111111111 111111100 134577787776
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEE-e-CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccc
Q 001159 602 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 679 (1135)
+.+.. .+..+.+|+..++...... . ...|.-.+++.+++|+++++|+|..||.|.+|.--.. ....
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~---- 241 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDS---- 241 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------cccc----
Confidence 65555 4557889998875511111 0 1122234789999999999999999999999964221 0000
Q ss_pred cCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcc
Q 001159 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1135)
Q Consensus 680 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~ 759 (1135)
...++.-|
T Consensus 242 ---------------------------------------------------------------~t~t~lHW--------- 249 (792)
T KOG1963|consen 242 ---------------------------------------------------------------ETCTLLHW--------- 249 (792)
T ss_pred ---------------------------------------------------------------ccceEEEe---------
Confidence 00112222
Q ss_pred ceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCC
Q 001159 760 QIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKP 839 (1135)
Q Consensus 760 ~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 839 (1135)
|..+| .+++|++||.+|++|+..|.+.+|.+.+++.. .++. -
T Consensus 250 -----------H~~~V-~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq------------------------fLPR--L 291 (792)
T KOG1963|consen 250 -----------HHDEV-NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ------------------------FLPR--L 291 (792)
T ss_pred -----------ccccc-ceeEEecCCceEeecccceEEEEEeecCCCcc------------------------cccc--c
Confidence 56677 99999999999999999999999976543321 1222 1
Q ss_pred CCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC-----------CCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 840 TEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-----------PPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 840 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h-----------~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
..+|..+.+|||+.+.+..- |++|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 292 -gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 292 -GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred -CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 78899999999999888776 999999998877666665442 22367789999 67788889999999
Q ss_pred EEEEcccceeeEEec-----------CcCCCeEEEEEcCCCCeEEEEc--------CC--CcEEEEeCCCCceeceeeee
Q 001159 908 QIYNVRVDEVKTKLK-----------GHQNRITGLAFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQ 966 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~-----------~h~~~i~~l~~s~d~~~l~s~~--------~D--~~i~iwd~~~~~~~~~~~~~ 966 (1135)
.+||+.+.+.+..+. .+.-.+++++.+-.|.+++|.- .| -.+++|-......--.....
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999998876665442 1223578888888999999874 23 34788977665433222222
Q ss_pred cCCCCCCCCCCceEEEECCCCc-EEEE-EecCeEEEEec-CCceee----c---cCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 967 APAGRQSPLVGETKVQFHNDQT-HLLV-VHESQISVYDS-KLECSR----S---WSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~-~l~~-~~d~~v~vwd~-~~~~~~----~---~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
....|.. ..+..+.+++... ..++ +.|+.++||-. ....+. . ......|..++++++||.||..|++
T Consensus 450 I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~- 526 (792)
T KOG1963|consen 450 INNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV- 526 (792)
T ss_pred EecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-
Confidence 3333331 2233333344333 5555 68999999988 111111 0 1122357889999999999987665
Q ss_pred eCCCeEEEEECCC-ceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001159 1037 FCDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1037 ~~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~ 1107 (1135)
+.|++|.+||..+ .++.+........... .. -.+-.+.+ ..+.....+.+.+|++.+....|
T Consensus 527 s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~-----~~--~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 SFDDTITIWDYDTKNELLCTEGSRNWPIAE-----LL--FTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ecCCEEEEecCCChhhhhccccccccchHh-----Hh--hhcccccc--cceeeccCceEehHhhhhhheec
Confidence 5889999999999 5555554433211111 00 01111213 33444566799999999998888
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=5.7e-24 Score=228.09 Aligned_cols=274 Identities=16% Similarity=0.205 Sum_probs=221.0
Q ss_pred ccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEE-EE
Q 001159 770 IAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IA 848 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~-l~ 848 (1135)
+|...| ..+++.+.. .+++++.||++++|+-..... +-...+.+ | .+.|.. ++
T Consensus 12 gH~~DV-r~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~--~-~g~i~~~i~ 65 (745)
T KOG0301|consen 12 GHKSDV-RAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEG--P-KGFIANSIC 65 (745)
T ss_pred cCccch-heeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceeccc--C-cceeeccce
Confidence 477777 788877766 488999999999996322111 11111222 4 556655 77
Q ss_pred eec-CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCC
Q 001159 849 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 926 (1135)
Q Consensus 849 ~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~ 926 (1135)
|.+ ++-.+++|+ |.+|.+|...+...+.++++|...|.|+.... ++. +++|++|.++++|.. +++...+++|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 775 555677777 99999999999999999999999999999887 665 899999999999964 667778999999
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCc
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1006 (1135)
.|+++++-|++ .++|||.|++|++|.-.+ .++...||. +-|..+++-+++.++-+++||.|+.|+++++
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 99999999998 889999999999997644 577888888 7899999999999998899999999999999
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
++..+ ++|..-|.++....++..++++++|++++||+.. ++...|.... ...-++...+ +| -|
T Consensus 211 ~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt----------tsiWsa~~L~-Ng-DI 273 (745)
T KOG0301|consen 211 VLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT----------TSIWSAKVLL-NG-DI 273 (745)
T ss_pred eeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc----------cceEEEEEee-CC-CE
Confidence 98875 5678999999999999999999999999999998 5566555332 2233444444 33 68
Q ss_pred EEEecCCcEEEEecC
Q 001159 1087 ALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1087 ~sg~~dg~v~~W~~~ 1101 (1135)
++|+.||.||+|-..
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 899999999999876
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.5e-23 Score=198.96 Aligned_cols=300 Identities=16% Similarity=0.226 Sum_probs=229.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|.+.|+++.+.|...+++++|+.||.|.|||++.........+ +.+....+...--.+|.-.|..+.|-| |.-.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l----i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL----IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc----eeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 8899999999997666899999999999999986542211000 000001112222457999999999999 66688
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCC-eEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
.+++-|.++++||.++-+... .+ ...+.|.+-+++|-.. ..++|+|..|-.|++.|+.+|...+++.||.+.|.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 889999999999999865432 33 3567788889988543 347889999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEe--------------cCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.++++++. +.
T Consensus 194 V~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~ 268 (397)
T KOG4283|consen 194 VEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DD 268 (397)
T ss_pred EEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----cc
Confidence 99999875 68899999999999999865 333332 345568999999999999999986 77
Q ss_pred eEEEEECCCCeEEEE-ee--cccC---CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 568 HLVEWNESEGAIKRT-YS--GFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~-~~--~~~~---~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
.+++|+...|+..-. +- .|.. ..+. +. +.+...++.--.++.+.++++-++..+..+..|. ..|.|.++.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~~ 344 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAYR 344 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEeec
Confidence 899999988763211 10 1111 0111 22 3334445554566899999999999999999883 379999999
Q ss_pred CCCCEEEEEECCCcEEEEEc
Q 001159 642 KEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|+-+...+|..|+.|..|-.
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CchhhhhccccCCccccccc
Confidence 99999999999999999976
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.5e-23 Score=199.74 Aligned_cols=241 Identities=16% Similarity=0.126 Sum_probs=192.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....|+++.|+|.+..|++++.||++++||+....... .+ .|..++.+++|.++.+ +++|+-||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999864332 22 4899999999998664 89999999999999998
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+... .+..|..+|.+|...+.. ..+++||.|++|++||.+.......+... ..|.++..+ |+.|++|+. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeec----C
Confidence 8754 455699999999998766 68999999999999999875444444433 378877664 667777664 7
Q ss_pred CeEEEEECCCCeEEEEe-ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCC-------CCC
Q 001159 567 SHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LPA 634 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~ 634 (1135)
..+.+||+++.....+. ...-.-.++++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 88999999986654322 2222236899999999999999999999998777665 33344554432 136
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|++++|+|-...+++|+.||.|.+||+.+.
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccCcch
Confidence 899999999899999999999999999877
No 128
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.2e-23 Score=214.32 Aligned_cols=282 Identities=13% Similarity=0.154 Sum_probs=224.8
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|..-| ..++++...+.+.+++ .|.|+|||+....- ...+. .+..... ...|+++.+.
T Consensus 418 HGEvV-cAvtIS~~trhVyTgG-kgcVKVWdis~pg~-------------------k~Pvs-qLdcl~r-dnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVV-CAVTISNPTRHVYTGG-KGCVKVWDISQPGN-------------------KSPVS-QLDCLNR-DNYIRSCKLL 474 (705)
T ss_pred cCcEE-EEEEecCCcceeEecC-CCeEEEeeccCCCC-------------------CCccc-cccccCc-ccceeeeEec
Confidence 44444 8999999998877765 57899999864211 00000 1112223 7889999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 927 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~ 927 (1135)
|||+.|++|+ -.++.|||+...... ..+......+.+++.+| |.++.+++..||.|.|||+.+...++.|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 9999999999 588999999865443 33443445678899999 8999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCCc
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLE 1006 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~ 1006 (1135)
+.||.+++||..|-||+-|.+|+-||+..+..+.. .. ....|.++-.+|.+.+++++ .++.|.|...++.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hh----hhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 99999999999999999999999999998774332 11 11568899999999999997 5777888777544
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
..-.+ +-|...|.++.|++-|+++++.+.|..+..|...-|..+.+.... ..++++..+. |.++|
T Consensus 625 ~kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-----------SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 625 EKYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-----------SSVLSCDISF-DDKYI 689 (705)
T ss_pred cceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-----------Ccceeeeecc-CceEE
Confidence 44333 345889999999999999999999999999999999888765422 5677888777 66899
Q ss_pred EEEecCCcEEEEec
Q 001159 1087 ALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1087 ~sg~~dg~v~~W~~ 1100 (1135)
+||+.|....+|.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888865
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.3e-23 Score=211.80 Aligned_cols=252 Identities=17% Similarity=0.267 Sum_probs=203.8
Q ss_pred cCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCce-------eeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 405 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~-------~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
-.|.+.|+.+.+-|... .+|+.+..+.|.|||..+.... ++...|.+|.+.-.+++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 35999999999999655 5666788899999998754322 233478899998889999998776 89999999
Q ss_pred CcEEEEEcCCCe-------eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc--CCCceeEecCCCCcEEEE
Q 001159 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~ 547 (1135)
++|++||+.... ....+.+|...|..++|++... ..+++++.|+.+.|||++ +.+......+|...+.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997533 2356789999999999999865 799999999999999999 555666788899999999
Q ss_pred EEcCCCCE-EEEEecCCCCCCeEEEEECCCC-eEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceE-
Q 001159 548 AYSADGTR-LFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1135)
Q Consensus 548 ~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1135)
+|+|-+.+ ||+++. |++|.+||+++- +.+.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99996655 556654 889999999974 46788999988 89999999976 56677889999999999752221
Q ss_pred -----------EEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCC
Q 001159 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 663 (1135)
..+...+|...|..+.|+|+.. .|++.+.|+.+.||....
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1233445566899999999655 667888999999998763
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=195.90 Aligned_cols=295 Identities=12% Similarity=0.165 Sum_probs=222.2
Q ss_pred cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 335 ~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.|.++..++.+.. -.|+.||+.|. +||+|+.+|.|.|||+.+...- .++.+|..+|.++
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~sl 71 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITSL 71 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeEE
Confidence 3555667777665 88999999997 8999999999999999886532 2478999999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
+||+||+.|++++.|..|.+||+..|..++.. ....+|+.+.|.|..++..+++-- +..-.+-++..++.. .+.
T Consensus 72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~Lp 145 (405)
T KOG1273|consen 72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-VLP 145 (405)
T ss_pred EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-ecc
Confidence 99999999999999999999999999876633 257899999999987763444433 444555555543211 111
Q ss_pred -CCCCCe----eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 495 -GHEAPV----YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 495 -~h~~~v----~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
...+.. .+..|+ ..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |..
T Consensus 146 ~d~d~dln~sas~~~fd--r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv 219 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFD--RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV 219 (405)
T ss_pred CCCcccccccccccccc--CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence 111111 112343 455999999999999999999999888777666 78999999999999998875 889
Q ss_pred EEEEECCCC-------eEE--EEeec-ccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 569 LVEWNESEG-------AIK--RTYSG-FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 569 i~~wd~~~~-------~~~--~~~~~-~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
|+.|+++.- ++. +.+.. -....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~D 298 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLD 298 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heee
Confidence 999997621 111 11111 0111345789999999998876 4567999999999999999877643 5678
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 638 LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 638 ~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.|+|-...+++- ..|.++||.....
T Consensus 299 V~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 299 VNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccccceeeeeec-cCCceEEEEeecc
Confidence 8999988888877 7789999987543
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=196.97 Aligned_cols=253 Identities=13% Similarity=0.234 Sum_probs=196.7
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6789999999999999999 8999999999999999999999
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC----cEEEEEEcCCCCEEEEEecCCCCC
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
+.++ ...+|+.+.|+|......++ .-.+..-.+-++........-....+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987644444 43444455555554222221111111 2233468999999999974 8
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC-------ceE--EEEeCCCCCCCcce
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NML--TTVDADGGLPASPR 637 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~ 637 (1135)
|.+.++|..+.+++..++......|..+.++..|++++.-+.|..||.|++..- ++. +.+..--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 899999999999999888776447999999999999999999999999998631 111 11111111123568
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEEcCCCchhhhhccccc
Q 001159 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 638 ~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 675 (1135)
+.|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 999999999988775 578999999888 7787777654
No 132
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=2.9e-21 Score=205.08 Aligned_cols=273 Identities=13% Similarity=0.147 Sum_probs=202.5
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.|..++|-|||..+++++ +..+.|||.+.|..+.+ +++|++.|+|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 788999999998776655 55899999999988875 889999999999999999999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
.|..|.+|+.+-...++ -.|.+.|.||.|+|-.. .|+||+-. ..-+|...... +...+ ....|.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhh-HHhhh-hheeEEEeee--
Confidence 99999999977654433 25999999999999988 78888744 56788854432 22221 2345666666
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCceeEecC---CCCcEEEEEEcCCCC-----EEEEEecCCCCCCeEEEEECCCCeE
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
..||++++.|-.||+|.+=+-. ++....+.- .+.+|.+++|+|... .+++.-. ..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 5577999999999999987543 333333333 556999999999643 2333321 2334444332 333
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
+..-+.-.- ...|+.+.++|.+++.||.|+.+.+|..+ |-.+.++....+ .|+.++..|+++.++.|..||+|..|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehh
Confidence 322111111 35678899999999999999999999754 666666654433 79999999999999999999999999
Q ss_pred EcCC
Q 001159 660 ANSD 663 (1135)
Q Consensus 660 d~~~ 663 (1135)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8743
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.3e-23 Score=192.39 Aligned_cols=252 Identities=17% Similarity=0.255 Sum_probs=202.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|++.|-.+...=-|+ .|||++.|++|+|+.+..+.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888888877888 58999999999999998765311 1123789999999999987 8999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eeeeeecCCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAP 499 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~ 499 (1135)
||+++.||.|.||.-.++ ...+......|...|++++|.|.+-.+.|++++.||.|.|.+.++. ...+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999887 4445557778999999999999988889999999999999998754 122345679999
Q ss_pred eeEEEeeccCC-c-----------cEEEEEEcCCeEEEEeCcCCCce--eEecCCCCcEEEEEEcCCC----CEEEEEec
Q 001159 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1135)
Q Consensus 500 v~~i~~~~~~~-~-----------~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~----~~l~~~~~ 561 (1135)
|++++|.|..- | ..|++|+.|+.|+||+.++.+-. ..+..|...|..++|.|.- .+|++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988621 1 56999999999999999876432 3578899999999999965 46888874
Q ss_pred CCCCCCeEEEEECCCC--eEE-EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 562 SKEGESHLVEWNESEG--AIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~-~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+++.||-.+.. .-. ..+..... .+..+.||..|+.|++++.|+.|.+|.-..
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 889999976622 111 12222223 789999999999999999999999997553
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.2e-24 Score=229.81 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=214.6
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588889999987788999999999999999998765544 6889999999999999988 8999999999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+.++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||++..++...+.+|...+..+.|+|+|+++++++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999976 88999999999999999999999999999999999999999999999974
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
|..+++||...|+....|.+|.. .+.++.|+|..-.+++|+.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78999999999999999999988 8899999998888888999999999999998888777654 4579999999999
Q ss_pred CEEEEEECC
Q 001159 645 SLLAVTTSD 653 (1135)
Q Consensus 645 ~~l~~~~~d 653 (1135)
..+++|...
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 988887654
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=218.97 Aligned_cols=283 Identities=19% Similarity=0.203 Sum_probs=212.5
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
|.... +.++|.|+|..|++++.||.|++|+...... ....+.+ + ...|.+++.
T Consensus 12 ht~G~-t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~P~ti~~------~-g~~v~~ia~- 64 (933)
T KOG1274|consen 12 HTGGL-TLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------EPETIDI------S-GELVSSIAC- 64 (933)
T ss_pred ccCce-EEEEEcCCCCEEEEecCCCceEEeecCCccc------------------CCchhhc------c-CceeEEEee-
Confidence 55556 9999999999999999999999997543211 0111100 2 556666665
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeE
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 929 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~ 929 (1135)
++.++++|+ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 455888888 89999999998876655655677899999999 899999999999999999999988999999999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCce
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLEC 1007 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~ 1007 (1135)
+|.|+|.+.+||+.+-||.|++|+++++........-...........+..++|+|+|..+++ +.|+.|++|+. ....
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 999999999999999999999999998875443221111111111245688999999666665 89999999999 5555
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
...+.... +...+..++|||+|+|||+++.||.|.|||+++-+. | .....+.|.+|.| +++-+-
T Consensus 223 ~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~--------~~~~~Vc~~aw~p-~~n~it 286 (933)
T KOG1274|consen 223 QFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------H--------EFKRAVCCEAWKP-NANAIT 286 (933)
T ss_pred heeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------c--------cccceeEEEecCC-CCCeeE
Confidence 45554433 344599999999999999999999999999997111 2 1224566788888 444444
Q ss_pred EEecCCcEEEE
Q 001159 1088 LGMSDGAVHVV 1098 (1135)
Q Consensus 1088 sg~~dg~v~~W 1098 (1135)
.-..-|...+|
T Consensus 287 ~~~~~g~~~~~ 297 (933)
T KOG1274|consen 287 LITALGTLGVS 297 (933)
T ss_pred EEeeccccccC
Confidence 44444544444
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7e-22 Score=202.99 Aligned_cols=293 Identities=16% Similarity=0.230 Sum_probs=220.1
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEE-EEeCCCCCCCcceEEEcCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~ 643 (1135)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+....... .+.. .++|.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL---PGPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc---ccceeeeecCCC
Confidence 55699999999999999987622111222111 235666665 45589999987655444 2222 236899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
|.+|+.|+-.|.+++|.+.+| .++..+..
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~a-------------------------------------------------- 121 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLSA-------------------------------------------------- 121 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHHh--------------------------------------------------
Confidence 999999999999999999999 66666544
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
|-..| +++.|+.||..|++++.||.|.+|.+.
T Consensus 122 -----------------------------------------------HYQ~I-TcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 122 -----------------------------------------------HYQSI-TCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred -----------------------------------------------hccce-eEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 44455 999999999999999999999999875
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC--CCEEEEEe-CCeEEEEECCCccEEEEEeC
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMS 880 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~ 880 (1135)
.--.... .........+.. | .-+|+.+...+. ..+|++++ |.++++||+..+.++.++.
T Consensus 154 ~lv~a~~--------------~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 154 DLVSADN--------------DHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred eeccccc--------------CCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 3211000 000111112223 7 899999988775 45788888 9999999999999998886
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----------------ceeeEEecCcCC--CeEEEEEcCCCCeEEE
Q 001159 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALVS 942 (1135)
Q Consensus 881 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------------~~~~~~l~~h~~--~i~~l~~s~d~~~l~s 942 (1135)
....+.+++.+| .++.+..|+.+|.|.+.++.. +..+..+.||.+ +|+|++++-||.+|++
T Consensus 216 fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 216 FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 566899999999 899999999999999988653 234566889999 9999999999999999
Q ss_pred EcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 943 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 943 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
|+.||.|.|||+.+.++++... ... .+|+.+.+.|-.+
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl~--~~k------gpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTLQ--TSK------GPVTNLQINPLER 332 (476)
T ss_pred eCCCCCEEEEecchHHHHHHHh--hhc------cccceeEeecccc
Confidence 9999999999999987554322 111 5678888765533
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.2e-22 Score=203.11 Aligned_cols=288 Identities=14% Similarity=0.198 Sum_probs=224.6
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCC--CceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCCch
Q 001159 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 590 ~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
.|+++.|+|....+++++.|++++||.++. ...++.+.... .+|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak- 291 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK- 291 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeeccccc-
Confidence 799999999999999999999999998875 34555555543 3899999999999 88999999999999997661
Q ss_pred hhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccc
Q 001159 667 LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746 (1135)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1135)
..+.-.
T Consensus 292 ~~k~~~-------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 292 VTKLKP-------------------------------------------------------------------------- 297 (514)
T ss_pred cccccC--------------------------------------------------------------------------
Confidence 110000
Q ss_pred ccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCC
Q 001159 747 IKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 826 (1135)
Q Consensus 747 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1135)
T Consensus 298 -------------------------------------------------------------------------------- 297 (514)
T KOG2055|consen 298 -------------------------------------------------------------------------------- 297 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001159 827 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 905 (1135)
Q Consensus 827 ~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg 905 (1135)
..+ +....+....+|+++++||..+ .|.|.+....+++.+.+++ -.+.|..++|+. +++.|.+.+.+|
T Consensus 298 -------~~g--~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~G 366 (514)
T KOG2055|consen 298 -------PYG--VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTG 366 (514)
T ss_pred -------CCC--cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCc
Confidence 000 0023344567788888999888 7999999999999998887 567899999998 889898899999
Q ss_pred cEEEEEcccceeeEEecCcCC-CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCcee-ceeeeecCCCCCCCCCCceEEEE
Q 001159 906 SVQIYNVRVDEVKTKLKGHQN-RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 906 ~v~iwd~~~~~~~~~l~~h~~-~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
.|.+||+.+..++..+....+ .-++++.|+++.+||+|+..|.|.|||.++.-.- ....+.....- ...|+.+.|
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL---tt~Itsl~F 443 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL---TTAITSLQF 443 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh---heeeeeeee
Confidence 999999999999988874322 2467888999999999999999999997652210 11122222221 257899999
Q ss_pred CCCCcEEEEE---ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 984 HNDQTHLLVV---HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 984 s~dg~~l~~~---~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
++|++.||.+ .++.+++-.+ +......|+....--+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 444 NHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999984 4678999888 666666676655446789999999999999999999999999874
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.1e-22 Score=206.80 Aligned_cols=254 Identities=13% Similarity=0.158 Sum_probs=210.2
Q ss_pred CeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC
Q 001159 359 QTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1135)
Q Consensus 359 ~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~ 438 (1135)
.+++++-.....|.+|.+.......+ ..--.++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------------------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------------------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred hheeeecccCccccccccCchhhhhh-------------------hcccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 34555445556888998876554432 11245689999999999999999999999999999
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---------CCeeeeeecCCCCCeeEEEeeccC
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---------AGRKQYTFEGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1135)
+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++. +-++++.|..|.-+|+++...+.+
T Consensus 112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 998776 6688999999999999999 89999999999999873 345778899999999999988775
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-------------
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------------- 576 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------------- 576 (1135)
...+++|+|.|.++++||+..+..+..+. ....+.+++.+|-++.+++|+. +|.|.+.++..
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence 55899999999999999999887766654 4567899999999999999975 88888877643
Q ss_pred ---CeEEEEeecccC-CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 577 ---GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 577 ---~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
+..+..+.||.+ ..|+|++++.||..|++|+.||+|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 234566778876 57999999999999999999999999999999999888743 347888888764
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=203.68 Aligned_cols=288 Identities=12% Similarity=0.206 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC-eEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~la 424 (1135)
.++|++|.|+|..+ +|.+++.||.++||.++......- +. +.-...+|.+..|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS--~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QS--IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------ee--eeeccCccceeeecCCCceEEE
Confidence 57899999999998 788899999999999986432211 00 122457899999999999 899
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
+++....++.||+.+.+.. +...+.++. ..+.....+++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999986543 233444554 3577889999999 89999999999999999999998886 67889999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC-cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC------
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE------ 576 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~------ 576 (1135)
+|+. ++..|++++.+|.|.+||++...++..+...++ .-++++.++++.++++|+. .|.|.|||.++
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 558999999999999999999988887766554 5578889999999999974 88999999653
Q ss_pred CeEEEEeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCC-CCCCCcceEEEcCCCCEEEEEECC
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
.+++..+..-.. .|+++.|++|.+.|+.++ .+..+++-.+.+......+... .....|+|++|+|.+.++|.|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 345555555444 799999999999988876 5678999998887766655432 334578999999999999999999
Q ss_pred CcEEEEEcC
Q 001159 654 NGIKILANS 662 (1135)
Q Consensus 654 g~i~iwd~~ 662 (1135)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999863
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.6e-20 Score=207.37 Aligned_cols=292 Identities=13% Similarity=0.149 Sum_probs=216.9
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++ ..+ ++++.++.|++||..+.+....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999999999888876544 6778998764 555 677789999999998877665555433 35678
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC-eEEEEECCCCceEEEE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1135)
+|+|+++.+++++. .++.|++||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988887776433 467899999999999988764 5778899888776655
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccc
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 705 (1135)
.... .+..++|+|+++++++++ .++.|.+||+.++ +..+.+
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~---------------------------------- 195 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKI---------------------------------- 195 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeee----------------------------------
Confidence 4322 357899999999886554 5899999998776 211110
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCC
Q 001159 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSG 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg 785 (1135)
.+...+
T Consensus 196 --------------------------------------------------------------------------~~~~~~ 201 (300)
T TIGR03866 196 --------------------------------------------------------------------------TFEIPG 201 (300)
T ss_pred --------------------------------------------------------------------------eecccc
Confidence 000000
Q ss_pred cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCe
Q 001159 786 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGK 863 (1135)
Q Consensus 786 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~ 863 (1135)
. .. . ......++|+||+++++++. ++.
T Consensus 202 ~------~~--------------------------------------------~-~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 202 V------HP--------------------------------------------E-AVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred c------cc--------------------------------------------c-cCCccceEECCCCCEEEEEcCCCCe
Confidence 0 00 0 11223477888888765543 678
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 935 (1135)
|.+||+.+++.+..+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..++. ....++++|+|
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 9999999888876654 455789999999 88888876 4689999999999999999875 46669999875
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=9.6e-22 Score=201.10 Aligned_cols=299 Identities=15% Similarity=0.217 Sum_probs=226.0
Q ss_pred EEeec-CCCCeeEEEEecCCC-eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..... +..+|++++|+|... .++|+|+..|+|-+||+.+.++..... .++..|..+|.++.|+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFS 243 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEec
Confidence 33344 678999999999876 799999999999999997544433211 1367899999999999
Q ss_pred C-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-eeeecC
Q 001159 418 P-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEG 495 (1135)
Q Consensus 418 p-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~ 495 (1135)
| +-..+.+.+.||+|++-|+++... .....+......+.++.|+.+.. .++.+..=|...+||++++.. ...+.-
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhh
Confidence 9 556899999999999999987532 22223333455678899998888 677777777999999998665 566777
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.+++++|-.+ .+++|+|.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+|
T Consensus 321 h~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv 395 (498)
T KOG4328|consen 321 HKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRV 395 (498)
T ss_pred hhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEE
Confidence 999999999999876 79999999999999999875543 344568889999999999888887764 888999
Q ss_pred EECC----CCeEEEEeecccC--C--ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc-eEEEcC
Q 001159 572 WNES----EGAIKRTYSGFRK--R--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNK 642 (1135)
Q Consensus 572 wd~~----~~~~~~~~~~~~~--~--~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~ 642 (1135)
||.. .-.+...+.-... . ......|.|+.+++++|-.-..|-|+|-..++.+..+-..... .|. -..|+|
T Consensus 396 ~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP 474 (498)
T KOG4328|consen 396 FDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHP 474 (498)
T ss_pred eecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeecc
Confidence 9983 2223333321111 1 2334679999999999998899999999999888776543322 333 357999
Q ss_pred CCC-EEEEEECCCcEEEEEcC
Q 001159 643 EGS-LLAVTTSDNGIKILANS 662 (1135)
Q Consensus 643 ~~~-~l~~~~~dg~i~iwd~~ 662 (1135)
-+. +++-++..|.|.||-..
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeccCCccceEEEEecC
Confidence 777 55555567889988644
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.9e-20 Score=206.81 Aligned_cols=275 Identities=9% Similarity=0.061 Sum_probs=204.4
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~~ 439 (1135)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999988875542 2333 336789999999977 5667889999999998
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 519 (1135)
++... .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 3433433 567899999984 345566789999999999888877753 3446788998755 78888887
Q ss_pred CC-eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC------Ccee
Q 001159 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1135)
Q Consensus 520 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1135)
++ .+..||..+........ ....+.+++|+++++++++++. .++.|++||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765544332 2334577999999998876542 377899999999988776653211 0234
Q ss_pred EEEecCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCCCchhhhh
Q 001159 593 VVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 593 ~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 670 (1135)
.++|+|+++++++ .+.++.+.+||+.+++.+..+... + .+.+++|+|+|++|+++ +.++.|.+||+.++ +....
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C--CcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 5889999998655 455678999999998877665432 2 57899999999999886 45899999999988 44444
Q ss_pred c
Q 001159 671 L 671 (1135)
Q Consensus 671 ~ 671 (1135)
+
T Consensus 287 ~ 287 (300)
T TIGR03866 287 I 287 (300)
T ss_pred E
Confidence 4
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.4e-21 Score=186.44 Aligned_cols=245 Identities=14% Similarity=0.217 Sum_probs=180.9
Q ss_pred ccccceEEEEEEec-CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEE
Q 001159 770 IAASKVVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 848 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~-dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~ 848 (1135)
.|...| ..+.|-| |.-.+.+++-|.++++||.++.+. .. .+. - ++.|.+-+
T Consensus 99 ~Hky~i-ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~---------------------a~--~F~---m-e~~VYsha 150 (397)
T KOG4283|consen 99 GHKYAI-SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE---------------------AV--DFK---M-EGKVYSHA 150 (397)
T ss_pred cceeee-eeeEEeeecCceeecccccceEEEeeccccee---------------------eE--Eee---c-Cceeehhh
Confidence 366677 7777777 444556666699999998664321 00 011 1 56677777
Q ss_pred eecCC---CEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEE---
Q 001159 849 LSKND---SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTK--- 920 (1135)
Q Consensus 849 ~s~dg---~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~--- 920 (1135)
+||-. -++|+|. +-+|++-|+.+|..-+++.+|.+.|.++.|+|...-.||+|+.||.|++||+... .+...
T Consensus 151 mSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 151 MSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred cChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 77732 3677777 6789999999999999999999999999999966668899999999999998743 22222
Q ss_pred -----------ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 921 -----------LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 921 -----------l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
-..|.+.|.+++|+.|+.++++++.|..+++|+..+|+.............. ...-..+. +.+...
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~--~~~~~~~~-~~~s~v 307 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT--TSFAVHIQ-SMDSDV 307 (397)
T ss_pred ccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc--ccceEEEe-ecccce
Confidence 2367788999999999999999999999999999988753332222221111 11112233 334443
Q ss_pred EEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 990 LLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 990 l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
++. -.++.+.++.+ ++..++.+.. |...|.+.+|-|+-+...+|+.|+.|..|-..
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~---h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLST---HLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeec---ccceeeEEeecCchhhhhccccCCcccccccc
Confidence 333 46789999999 8888888754 47889999999999999999999999999873
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.3e-21 Score=202.26 Aligned_cols=318 Identities=16% Similarity=0.219 Sum_probs=230.0
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
...+.||++.|.++...|.|. +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|+|..+-..|+.+-.+. +.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 346789999999999999999 89999999999999999999999886 56789999999998755555554444 555
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe----EEEEeecccCCceeEEEecCCCC
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
-+..-+..+... +....|+++-.....+..+..|.-.... -++..-.|.. .|..+.|+..|.
T Consensus 469 vnp~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGD 534 (733)
T KOG0650|consen 469 VNPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGD 534 (733)
T ss_pred eCccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCc
Confidence 544332111100 1111222221111235567778654211 1223333444 899999999999
Q ss_pred EEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccc
Q 001159 602 RFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 602 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 678 (1135)
||++... ...|.|.++........+... .+.|.++.|+|...+|++++.. .|+|||+... .+.+.+..
T Consensus 535 YlatV~~~~~~~~VliHQLSK~~sQ~PF~ks--kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kq-elvKkL~t----- 605 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLSKRKSQSPFRKS--KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQ-ELVKKLLT----- 605 (733)
T ss_pred eEEEeccCCCcceEEEEecccccccCchhhc--CCceeEEEecCCCceEEEEecc-ceEEEehhHH-HHHHHHhc-----
Confidence 9998653 457889999876655444333 2368999999999998888764 8999998765 44433211
Q ss_pred ccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCc
Q 001159 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1135)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~ 758 (1135)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCC
Q 001159 759 SQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 838 (1135)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1135)
+
T Consensus 606 -----------------------------------------------------------------------------g-- 606 (733)
T KOG0650|consen 606 -----------------------------------------------------------------------------G-- 606 (733)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred CCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC-ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc---
Q 001159 839 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--- 913 (1135)
Q Consensus 839 h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~--- 913 (1135)
...|..++++|.|.-|+.|+ |+.+..+|+.- .+..+++.-|...+++++|++ .-.++++|+.||++.|+--.
T Consensus 607 --~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 607 --SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred --CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeeh
Confidence 23345566777777777777 78888888763 456778888999999999999 78899999999999998532
Q ss_pred ---cc---eeeEEecCcCCC----eEEEEEcCCCCeEEEEcCCCcEEEE
Q 001159 914 ---VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 952 (1135)
Q Consensus 914 ---~~---~~~~~l~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~iw 952 (1135)
.. -++..+++|... |....|+|...+|++++.||+|++|
T Consensus 684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 22 245678899776 8899999999999999999999998
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.5e-21 Score=197.58 Aligned_cols=248 Identities=12% Similarity=0.153 Sum_probs=193.6
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeE------------------eecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
-|+++|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-+. .|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 367999999999999999864333222222 2379999999999988777 899999999999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
+||+.+|++..++..|.+.|.++.|+|... .+|++|+.|+++.+.|.+.....-..-...+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999999754 8999999999999999985433322222345788999999888777666
Q ss_pred cCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceE
Q 001159 561 TSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
. .+|+|+-+|++. ++++.++..|.+ .|.++++++.- ..+++++.|+.|++|++..-.+.......-......|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 4 489999999996 489999999998 99999998765 56777999999999998754432222111112235677
Q ss_pred EEcCCC-CEEEEEECCCcEEEEEcCCCchhhhhcc
Q 001159 639 RFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 639 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
++.|+- -.++.|+..+.++|||+.+.....+.|.
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF~ 459 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAFG 459 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHHhhc
Confidence 777754 4677888888999999988855555543
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-21 Score=213.34 Aligned_cols=297 Identities=11% Similarity=0.179 Sum_probs=227.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~la 424 (1135)
+....++...++-..++++| ...+.||.+........ +.+..-. -..-...+..|.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~--~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK--CNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc--eeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 34677778888877665555 34777887765432211 1100000 001123466788886 678999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+++..|.|.+||+.....-+....+..|...|.++.|++.... +|+|||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333367899999999999998776 899999999999999999999999999889999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
|+|.. +..++++...|.+++||++... +...+.+|.++|.|+.|+|++.+|++||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99986 5899999999999999998754 46688999999999999999999999985 889999999877766555
Q ss_pred ecccCCceeEEEecCCCCE-EEEEe--CCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEE
Q 001159 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 658 (1135)
..+...+|.++.|-|...+ |++++ .|-.|+|||++.. -+..++..|. ..++.++|.. |...+.+++.||++..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHH
Confidence 5556668999999998765 45444 6889999999863 3455666554 4788999976 6667888888888765
Q ss_pred EEcCCC
Q 001159 659 LANSDG 664 (1135)
Q Consensus 659 wd~~~~ 664 (1135)
-..++.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 544444
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3.5e-21 Score=204.76 Aligned_cols=290 Identities=17% Similarity=0.213 Sum_probs=212.2
Q ss_pred EEEEec--CCCeEEEEEeccceEEEEEcCCcccc-ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 351 ~v~~sp--~g~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
++.|++ +.+++||.+..||.|.++|....... ....| .....|...|..+.|-|....|++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEcc
Confidence 455553 55679999999999999998754322 11111 12346999999999999777899999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-------------------
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------------------- 488 (1135)
.|.++++||+++.+..... .+.||.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998776543 46799999999999999887 89999999999999986322
Q ss_pred --------eeeeecCCCCCeeE---EEeeccCCccEEEEEEc-CCeEEEEeCcCCCceeE--------ecCC---CCcEE
Q 001159 489 --------KQYTFEGHEAPVYS---VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWCT 545 (1135)
Q Consensus 489 --------~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~ 545 (1135)
.++....+...|.+ +.+.-+ ...|++++. |+.|++||++....... +..+ ...+.
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01112234444444 333233 378999887 99999999987654332 2222 23678
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--EEEEeecccCCcee-EEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~-~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
++.....|.+|++.+. |+.|+.||+.+-. ++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888998887664 8899999998543 44555554432222 234689999999999999999999988553
Q ss_pred -EEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCCC
Q 001159 623 -LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 -~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
...+.+| ...|.+++|.| .-.-++++++|..++||++.++
T Consensus 352 ~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3334444 44799999988 3345677799999999999766
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.3e-22 Score=214.61 Aligned_cols=249 Identities=12% Similarity=0.198 Sum_probs=198.6
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVA 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~ 426 (1135)
....|+|+.--..+|||++..|.|.+||+.... .. ....+|..|...|+++.|++. ..+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rn--------------k~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RN--------------KLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--cc--------------hhhhHhhhhccceeeeeeccCCccEEEec
Confidence 456788887666699999999999999998621 10 011237789999999999994 5688999
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEe
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~ 505 (1135)
+.||.|++||++..+... .+.+....|.+|.|+|.... .|+++.+.|.+++||++. .++...+..|.++|.|+.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876554 56677889999999997655 899999999999999985 4567788999999999999
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-CCcEEEEEEcCCCCE-EEEEecCCCCCCeEEEEECCCCe-EEEE
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-IKRT 582 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~~~~ 582 (1135)
+|+. .+|+||+.|++|+|||+.+.+.......+ ..++.++.|-|...+ |++++. -.+..|+|||++..- +..+
T Consensus 229 hPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 9944 89999999999999999876665544444 458899999998775 555554 347789999998654 4567
Q ss_pred eecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCc
Q 001159 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+..|.+ .++.++|.. |...+.+++.||+|..-.+++..
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 778877 889999975 45678889999988776665543
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.8e-21 Score=199.58 Aligned_cols=327 Identities=12% Similarity=0.225 Sum_probs=238.1
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC--EEEEEECCCcEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 657 (1135)
-..+.+|.+ .|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.|++|+|.+. .||++... .+.
T Consensus 393 ~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVL 467 (733)
T ss_pred eeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceE
Confidence 345788888 89999999999999999999999999999999999998764 589999999654 44444444 466
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
|.+..-|.++.... ..... +-.|
T Consensus 468 ivnp~~G~~~e~~~---t~ell---------------------------~~~~--------------------------- 490 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP---TKELL---------------------------ASAP--------------------------- 490 (733)
T ss_pred EeCccccchhhhcc---hhhhh---------------------------hcCC---------------------------
Confidence 76654442211110 00000 0000
Q ss_pred cccccccccccccccCCcCCcc--ceeEeecCCcccccceEEEEEEecCCcceeEeccc---ceeeeEEeccccCCCCCc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPS--QIKALRLPDSIAASKVVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~d---g~i~iw~~~~~~~~~~~~ 812 (1135)
.....+..+..|.-....... .+..+. |...| ..+.|+..|.+|++...+ ..|.|+++..
T Consensus 491 -~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i-~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-------- 555 (733)
T KOG0650|consen 491 -NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSI-RQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-------- 555 (733)
T ss_pred -CccCCcccceeechhhhhhhccceEEEEe-----cCCcc-ceeeeecCCceEEEeccCCCcceEEEEeccc--------
Confidence 001112345556544322111 122222 67788 999999999999988764 4455554432
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEec
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 892 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp 892 (1135)
...+.-.-. - .+.+.++.|+|...++++++...|+|||+..+.+++.+......|..++++|
T Consensus 556 --------------~~sQ~PF~k---s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 556 --------------RKSQSPFRK---S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred --------------ccccCchhh---c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 111111111 1 6788999999999999999999999999999888888887788899999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCce----eceeeeec
Q 001159 893 QDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK----LKSRFIQA 967 (1135)
Q Consensus 893 ~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~----~~~~~~~~ 967 (1135)
.|..|+.|+.|+.+..+|++-+ ++.++++.|...+++|+|++.-.++++|+.||++.|+--.-... .....+..
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 8888999999999999999844 67788999999999999999999999999999999984332111 11235666
Q ss_pred CCCCCCC-CCCceEEEECCCCcEEEE-EecCeEEEEe
Q 001159 968 PAGRQSP-LVGETKVQFHNDQTHLLV-VHESQISVYD 1002 (1135)
Q Consensus 968 ~~~~~~~-~~~v~~~~~s~dg~~l~~-~~d~~v~vwd 1002 (1135)
+.||... ..+|..+.|+|..-+|++ +.|++|++|.
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 7777643 256889999999999999 6899999983
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=9.1e-21 Score=201.61 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=205.7
Q ss_pred cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeE
Q 001159 786 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKV 864 (1135)
Q Consensus 786 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i 864 (1135)
..|+++.++|.|.++|.....+. ++...+ ..-..| .+.|..+.|.|....|++++ |.++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~l----k~~~aH-~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQL----KKPLAH-KNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhh----cccccc-cceeEeeccCCCceeEEEccCCcee
Confidence 34777788999999986543321 111100 111228 99999999999667788887 8999
Q ss_pred EEEECCCccEEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--------------------------
Q 001159 865 SLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-------------------------- 916 (1135)
Q Consensus 865 ~vwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-------------------------- 916 (1135)
++||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9999999998877 899999999999999889999999999999999975211
Q ss_pred -eeEEecCcCCCeEE---EEEcCCCCeEEEEcC-CCcEEEEeCCCCceecee---eeecCCCCCCCCCCceEEEECCCCc
Q 001159 917 -VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSR---FIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 917 -~~~~l~~h~~~i~~---l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.+.....|.+.|.+ +.+..|...||++|. |+.|+|||+......... .......+.....++.++.....|.
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 11122345556666 667789999999998 999999999875532111 1111222222336777888888888
Q ss_pred EEEE-EecCeEEEEecCCceeeccCCCCCCCC--CEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceecccc
Q 001159 989 HLLV-VHESQISVYDSKLECSRSWSPKDALPA--PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1065 (1135)
Q Consensus 989 ~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~--~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~ 1065 (1135)
+|.+ +.|+.|++|++....+.......++.. --..-..|||+.+|++|+.|...++|.+.+.+.--.+
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~--------- 355 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL--------- 355 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh---------
Confidence 8888 789999999993333322222222111 1112346899999999999999999999985433211
Q ss_pred ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1066 AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
...+.+.+.++.|.|..-.-++|+++|.++++|++..+-
T Consensus 356 l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 123446677888888766778888999999999996543
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.7e-20 Score=179.97 Aligned_cols=255 Identities=13% Similarity=0.193 Sum_probs=194.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCC-CceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
..+|.+-|.++.|.+-|+.+|+|+.|++|+|||...+ .........+.|.+.|..+.|.+. |+ .+|+++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4679999999999999999999999999999996443 445666678899999999999764 56 899999999999
Q ss_pred EEEcCC------C---eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee------Eec-------
Q 001159 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV------DYD------- 538 (1135)
Q Consensus 481 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~------- 538 (1135)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|||+.-...... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998521 1 133456677889999999999988999999999999999765433222 111
Q ss_pred CCCCcEEEEEEcCC---CCEEEEEecC-CCCCCeEEEEECCCC----eEEEEeecccCCceeEEEecCCC----CEEEEE
Q 001159 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~i~~s~~~----~~l~~~ 606 (1135)
.+.....|+.|+|. ..+|++++.+ ...-+.++||....+ ..+.++.+|.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999874 3467766532 112346778876543 24556777777 99999999963 468889
Q ss_pred eCCCeEEEEECCCCc-----------------eEEEEe-CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+.|| |+||.+.... .+..+. ...|...|..+.|+-.|..|++.++||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 23445589999999999999999999999999764
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1e-19 Score=177.00 Aligned_cols=258 Identities=12% Similarity=0.123 Sum_probs=187.8
Q ss_pred CCCCceEEEEeecCCCEEEEEe-CCeEEEEECC----CccEEEEEeCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEEc
Q 001159 839 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 839 h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~----~~~~~~~~~~h~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~ 912 (1135)
| ..-|.++.|.+-|+++|+++ |++|+|||.. +..+....+.|.+.|..+.|. |.-|+.+|+++.|+++.||.-
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 7 88899999999999999999 9999999964 356777889999999999996 446899999999999999975
Q ss_pred cc---------ceeeEEecCcCCCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCCCceeceeeeec-C----CCCCCCCC
Q 001159 913 RV---------DEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQA-P----AGRQSPLV 976 (1135)
Q Consensus 913 ~~---------~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~----~~~~~~~~ 976 (1135)
.. .....++....+.|++|.|.|. |-.||+++.||.++||+.-..-.+....++. . ........
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 21 1244567777889999999995 6799999999999999876533322221111 0 01111125
Q ss_pred CceEEEECCCC---cEEEEEecC------eEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCC----CEEEEEeCCCe
Q 001159 977 GETKVQFHNDQ---THLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGA 1041 (1135)
Q Consensus 977 ~v~~~~~s~dg---~~l~~~~d~------~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~----~~l~~~~~dg~ 1041 (1135)
...|+.|.|.. .+||++.+. .++||.. .++.........+|..+|+.++|.|+- ..||+++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 66788888653 578887766 8999998 454444444455889999999999963 4699999999
Q ss_pred EEEEECCCce------------eeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1042 IGVFDAETLR------------FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1042 I~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
|+||.+.... ....+..........|...+. .+.|.- -|..|++.|.||+|++|..+
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW--RVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE--EEEEee-eeeEEeecCCCceeeehhhh
Confidence 9999998421 112222222111222333344 555655 57899999999999999865
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=8.3e-20 Score=194.15 Aligned_cols=273 Identities=14% Similarity=0.220 Sum_probs=210.0
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|.+++|+.||+++++|+.|..|.+|...-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999988775 55799999999999999999999 999999999999999999999999998654322
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+. + +|.+.|.|+.|+|-...|++++-. ..-+|..... ...+ +.
T Consensus 88 Lk-Y---SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K----~k--------------------------- 130 (1081)
T KOG1538|consen 88 LK-Y---SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSK----HK--------------------------- 130 (1081)
T ss_pred ee-e---ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHh----hh---------------------------
Confidence 22 1 234579999999998889888754 4566754322 1110 00
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 782 (1135)
....+ .+.+|+
T Consensus 131 --------------------------------------------------------------------ss~R~-~~CsWt 141 (1081)
T KOG1538|consen 131 --------------------------------------------------------------------SSSRI-ICCSWT 141 (1081)
T ss_pred --------------------------------------------------------------------hheeE-EEeeec
Confidence 12334 889999
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCc-ceeccCCCCCCCCCceEEEEeecCC-----CEE
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-LMTNDINESKPTEESAACIALSKND-----SYV 856 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~i~~l~~s~dg-----~~l 856 (1135)
.||++++.|-.+|+|.+-+ .+|+ .....-++ +. ..+|.+++|+|.. ..+
T Consensus 142 nDGqylalG~~nGTIsiRN-----------------------k~gEek~~I~Rpg-g~-Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRN-----------------------KNGEEKVKIERPG-GS-NSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred CCCcEEEEeccCceEEeec-----------------------CCCCcceEEeCCC-CC-CCCceEEEecCCCCCCccceE
Confidence 9999999999999998742 1222 11111222 24 8899999999953 356
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 935 (1135)
++.+ ..++.++.+. |+.+..-+.-.-.-.|+.+-+ +|.++..|+.|+.+.+|.- .|-.+.++.....-|+.++..|
T Consensus 197 aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEcc
Confidence 6666 6777777774 455544444455678999999 8999999999999999974 4666777776777899999999
Q ss_pred CCCeEEEEcCCCcEEEEeCC
Q 001159 936 TLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~ 955 (1135)
+++.++.|+.||+|.-|++.
T Consensus 274 NsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCceEEEEEccCeeehhhhH
Confidence 99999999999999999875
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=5.4e-20 Score=180.39 Aligned_cols=298 Identities=17% Similarity=0.278 Sum_probs=218.0
Q ss_pred eeeEEeec--CCCCeeEEEEec----CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcc
Q 001159 337 KTVVRTLN--QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 337 ~~~~~~~~--h~~~V~~v~~sp----~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+....+. |+.+|..++|++ +...++|+.+ ...+.+|+......+. .++...-..|...
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Es 91 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDES 91 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcc
Confidence 34444444 788999999985 3334666665 4588999887543221 0111112347888
Q ss_pred eEEEEEcCC----CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 411 VNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 411 V~~v~~spd----~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
...++|+-| ..+||.|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQT 167 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccC
Confidence 889999865 3489999999999999999987666 67899999999999999877 899999999999999999
Q ss_pred Ceeeeee---cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee----------------------------
Q 001159 487 GRKQYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---------------------------- 535 (1135)
Q Consensus 487 ~~~~~~~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---------------------------- 535 (1135)
..++..| .+|.+.|.++.|++++ .++++++.|.++++|++...+-..
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 9999887 4699999999998865 799999999999999987322110
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCe-------------EEEEeecccCCceeEE--EecCC
Q 001159 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGA-------------IKRTYSGFRKRSLGVV--QFDTT 599 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~-------------~~~~~~~~~~~~v~~i--~~s~~ 599 (1135)
.-..|...|-|+.|- |+++++-+. ++.|..|... -++ .+..+.-..- .+.-+ +|++-
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~ 318 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPW 318 (385)
T ss_pred ccccccchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHH
Confidence 112233344444443 456776543 7789999872 111 1222222222 34444 55667
Q ss_pred CCEEEEEeCCCeEEEEECCCCceE--EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 600 RNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++.|+.|...|.|++||++..++. .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 889999999999999999987653 344444445679999999999999999999999999853
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-21 Score=220.43 Aligned_cols=252 Identities=15% Similarity=0.270 Sum_probs=207.8
Q ss_pred CCcceEEEEEcCCCCe----EEEEeCCCeEEEEEeCC---CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~----las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
.....+.++|++.|.. ||.|..||.|.+||... +...........|.+.|..+.|++.... +|++|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3456889999998876 88899999999999876 4444444567789999999999998776 89999999999
Q ss_pred EEEEcCCCeeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC--cEEEEEEcCCCCE
Q 001159 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~ 555 (1135)
.|||+.+-+.-.++. .-...|.+++|+..- ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998866555442 245689999998653 37899999999999999999988877766554 5789999998764
Q ss_pred -EEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCC
Q 001159 556 -LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 -l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
|++++ +.|+.-.|.+||++. ...++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+.
T Consensus 221 ql~~As-~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n- 297 (1049)
T KOG0307|consen 221 QLLVAS-GDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN- 297 (1049)
T ss_pred eeeeec-CCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-
Confidence 44444 556788999999985 456788888887 89999999877 7888999999999999999999999986433
Q ss_pred CCcceEEEcCCC-CEEEEEECCCcEEEEEcCCC
Q 001159 633 PASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+..+.|.|.. ..+++++-||.|.|+.+.+.
T Consensus 298 -W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 -WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred -ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 78999999954 58889999999999998765
No 156
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.2e-22 Score=212.36 Aligned_cols=233 Identities=11% Similarity=0.223 Sum_probs=210.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|...|.|+..-..++ .+++|+.|..+-+|.+..-..+.. +.+|..+|.++.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 677888998866676 789999999999999865443322 789999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
.|+.+|+|++||+...+.++ .|.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999987777 8889999999999999999 789999999999999998889999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
|+|++ .++++++.|.++++||...++....+..|...+.++.|+|..-.++.|+. |+++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98865 89999999999999999999999999999999999999999888888875 8899999999999988887
Q ss_pred cccCCceeEEEecCCCCEEEEEeCC
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~d 609 (1135)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7765 89999999999988888654
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2.2e-19 Score=181.37 Aligned_cols=303 Identities=18% Similarity=0.233 Sum_probs=219.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
...+|..+.|.+++...+|||+.|..|+||.++.+..-... .. ..-...+..|...|++|.|+|+|.+||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~~---------V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-MK---------VEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-ee---------EEEeecccCCcceeEEEEEcCCcCeee
Confidence 35699999999988767999999999999999876543210 00 111224788999999999999999999
Q ss_pred EEeCCCeEEEEEeC--------C-----CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 425 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 425 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++-|..+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222344557789999999999999999 89999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-------------------CCC----CcEEEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------APG----NWCTMMA 548 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~i~~~~ 548 (1135)
.+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999999876 899999998877777655433222110 011 1234678
Q ss_pred EcCCCCEEEEEecCCCC-----CCeEEEEECCC-CeEEEEeecccCCceeEEEecC------------------CCCEEE
Q 001159 549 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT------------------TRNRFL 604 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~------------------~~~~l~ 604 (1135)
|+|||..+++...--+- -+..++++-.. .+++..+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999865421111 12334554331 223333333332 233333332 223344
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++ ...|++||.++..++.....- +...++.++|++||..++..+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 454 458999999998888777532 2347999999999999999999999988877665
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=3e-19 Score=174.61 Aligned_cols=289 Identities=12% Similarity=0.175 Sum_probs=210.4
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc-------CCC
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 420 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------pd~ 420 (1135)
-.-.+.|||||.. +.+-+.|..+.+|++...-.-......+ ..+....+-......|...+|- |+.
T Consensus 51 f~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 3457899999985 5567899999999986321110000000 0001111111234567777775 678
Q ss_pred CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC---CEEEEEEecCCCeEEEEEEcCCCcEEEEEc-CCCeeee---ee
Q 001159 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQY---TF 493 (1135)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~~---~~ 493 (1135)
.++|+.+.+.-|++||.-+|+....... -.|.. ...+++|+|||. .|+. +..+.|+++|+ +.|+.-. ++
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~-ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRA-YDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhh-hhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 8999999999999999999875442222 23443 356899999999 4554 55889999999 5554221 11
Q ss_pred ----cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 494 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 494 ----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+..+-|.+++|+|... ..++.|+.-.++-||.-...+....+-+|.+.|+.+.|.++|+.|++|+. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13367789999999864 68999999999999988888899999999999999999999999999985 56789
Q ss_pred EEEECCC-CeEEEEeecccCCceeE--EEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 570 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 570 ~~wd~~~-~~~~~~~~~~~~~~v~~--i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..||++. +.++..+..|.+..-.. ....|++++|++|+.||.|++||+++ +..+..+..+.. .++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccc
Confidence 9999985 45566666654422222 45578999999999999999999998 776777765544 799999999988
Q ss_pred EEEEEECC
Q 001159 646 LLAVTTSD 653 (1135)
Q Consensus 646 ~l~~~~~d 653 (1135)
++++++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877654
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=7.8e-17 Score=188.93 Aligned_cols=374 Identities=22% Similarity=0.397 Sum_probs=286.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCCCC-CeeEEEeeccCCcc-EEEEEEc-CCeE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA-PVYSVCPHHKESIQ-FIFSTAI-DGKI 523 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~s~-dg~i 523 (1135)
.+..|...+.++.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3557899999999999998 78888899999999998887 6777776443 77888774 44445 5555444 9999
Q ss_pred EEEeCcC-CCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-
Q 001159 524 KAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN- 601 (1135)
Q Consensus 524 ~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~- 601 (1135)
.+||... ......+..|...|..++|+|++..+++++. .++.+++|+...+..+..+.+|.. .+.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999998 6777788899999999999999998877742 388999999999899999998777 899999999998
Q ss_pred EEEEEeCCCeEEEEECCCCceEE-EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccccc
Q 001159 602 RFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 680 (1135)
.+++++.|+.|++||...+..+. .+..+.. .+ ...|++++..+++++.|+.+++|+..........+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 55555899999999998777777 5666544 22 22899999899999999999999987662200000
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
..|...+ .++.|.|++..+++++.|+.+.+|+...... ..... ...|
T Consensus 281 --------~~~~~~v-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~- 327 (466)
T COG2319 281 --------SGHSSSV-LSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGH- 327 (466)
T ss_pred --------ecCCccE-EEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-eccc-
Confidence 0134555 8889999888888888888889996543211 11000 1114
Q ss_pred CCceEEEEeecCCCEEEEE-e-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~las-g~~dg~v~iwd~~~~~~ 917 (1135)
...+..+.+.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..++. +..++.+.+|+......
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCee
Confidence 5578888884343566666 3 7889999998877333333222 289999998 7 55555 78999999999998887
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
......+...+....+++++..+++++.++.+++|+..+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 777665547899999999999999999999999999987
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=3.4e-19 Score=174.88 Aligned_cols=301 Identities=14% Similarity=0.188 Sum_probs=203.7
Q ss_pred ccccceEEEEEEec----CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 770 IAASKVVVRLIYTN----SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 770 ~~~~~i~~~~~~s~----dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
.|..+| ..++|.+ +...+++..+...+.+|....... ++ ++.. .....| +....
T Consensus 36 d~~~~I-~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-----------ir--------~lq~-y~D~d~-~Esfy 93 (385)
T KOG1034|consen 36 DHNKPI-FGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-----------IR--------LLQS-YADEDH-DESFY 93 (385)
T ss_pred cCCCcc-ceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-----------ee--------eeee-ccCCCC-CcceE
Confidence 466677 8888874 444566666677888887653210 11 1111 111124 66667
Q ss_pred EEEeecC----CCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 846 CIALSKN----DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 846 ~l~~s~d----g~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
.++|+-| .-++|.|+ -|.|+|.|+.++++...+.+|..+|+.+.|.|+..++|++++.|.+|++|++++..++..
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V 173 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV 173 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE
Confidence 7777654 33677776 799999999999999999999999999999998889999999999999999999999988
Q ss_pred e---cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeee---cCCCCCC-----------------CCCC
Q 001159 921 L---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQ---APAGRQS-----------------PLVG 977 (1135)
Q Consensus 921 l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~---~~~~~~~-----------------~~~~ 977 (1135)
+ .+|.+.|.++.|+.+|.+++|+|.|.++++|++...+-....... ..++... ....
T Consensus 174 fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 6 579999999999999999999999999999999854321111000 0000000 0011
Q ss_pred ceEEEECCCCcEEEE-EecCeEEEEec-CCce-eeccCCC----------CCCCCCEEEEEEe--eCCCEEEEEeCCCeE
Q 001159 978 ETKVQFHNDQTHLLV-VHESQISVYDS-KLEC-SRSWSPK----------DALPAPISSAIYS--CDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 978 v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~-~~~~~~~----------~~h~~~i~~~~~s--~d~~~l~~~~~dg~I 1042 (1135)
|-++.|- |.++++ +.++.|..|.. +.+. +....+. ..-...|+-+.|+ |-++.||.|...|.|
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 1111111 567777 78889999987 2211 1111111 1114456666554 567899999999999
Q ss_pred EEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1043 GVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1043 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
++||++..+....-.... . .....+.-.+|+. |+.+|+...+|++|.-||--
T Consensus 332 ~vwdL~~~ep~~~ttl~~----s--~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTH----S--KSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEe----c--cccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999876641111110 0 1112233456666 88999999999999999853
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=5.9e-19 Score=180.88 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=167.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC----eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
...-|.++|++++|.|....-++++|..-|.|-+||+.+. ..+..+..|.++|.++.|+|.+. ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4556889999999999876448999999999999999532 34567788999999999999866 789999999999
Q ss_pred EEEeCcCCCceeEecC--CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCC
Q 001159 524 KAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
++-|++.......+.. ....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+..|.. .|.+++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987665444444 5567888999888888887753 55899999997654 666677777 89999999976
Q ss_pred -CEEEEEeCCCeEEEEECCCCceEE--EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 601 -NRFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 601 -~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.+++++|.|++++|||++...... .+..-.+...|.++.|||.+-.|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 467889999999999998633222 23333445589999999988779999999999999963
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=3.1e-19 Score=178.29 Aligned_cols=267 Identities=13% Similarity=0.213 Sum_probs=192.3
Q ss_pred ceeeEEeecCCCCeeEEEEecCC-CeEEEEEeccceEEEEEcCCccc-cccCCceeecccccccchhhhhccCCCcceEE
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQ-QTILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g-~~lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
|.-......|.+.++.+.-++-| ..++|+=+..|.|.||++...-. +..-...+-+ +...+...+.+|...=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 44445666688888888888875 34677778899999999864211 1100000000 112233347789999999
Q ss_pred EEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---ee
Q 001159 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1135)
Q Consensus 414 v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~ 489 (1135)
++|||- ...|++|..-+.|++|...++.-..-...+.+|+..|..++|||.... .|+|||-||+|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 234788888889999999987654444467789999999999998777 8999999999999999988 34
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC---CceeEecCCCCcEEEEEEcCCCCEEE-EEecCCCC
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEG 565 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~ 565 (1135)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. +.+..++.|..+|+++.|+|...-++ +++ .
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg----~ 368 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG----E 368 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----C
Confidence 444 7899999999998765 59999999999999999864 45668999999999999999665444 444 3
Q ss_pred CCeEEEEECCCCeE----------------EEEeeccc-CCceeEEEecCCC-CEEEEEeCCCeEEEE
Q 001159 566 ESHLVEWNESEGAI----------------KRTYSGFR-KRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~----------------~~~~~~~~-~~~v~~i~~s~~~-~~l~~~~~dg~i~iw 615 (1135)
|.+|.+||+..-.- .+-+-.|. +..+.-+.|++.- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 88999999853111 11112221 1246678888764 4677777777 3444
No 163
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=6.9e-19 Score=172.29 Aligned_cols=407 Identities=12% Similarity=0.131 Sum_probs=257.8
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
-+.|||+|+++|+++.- .+.|-|..+-+..+.. .--..|..+.|..|... .|.....|+.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999776 6888887774433211 12356889999999885 566778899999999999988888
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
+....+++.+++|+|++. ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++.. |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 988899999999999764 577778889999999998765543 33344556889999999999987631 211223233
Q ss_pred ECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
.-....+++.+..... ..+.+.|+|||+.+++-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2233344555555544 567799999998877532 22222222211 147889999999999999
Q ss_pred ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCC
Q 001159 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.|+.+||.+--+- +.+..+- |...+
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~---------------------------------------------------- 254 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSY---------------------------------------------------- 254 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhc----------------------------------------------------
Confidence 99999999876544 1111110 10000
Q ss_pred Cccccccccccccccc-ccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 731 SRLVDVKPRVAEDVDK-IKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
.|-+ ..++.- ......+. | .++.|.|..- ...+|.........
T Consensus 255 ------------~dp~~~~~~ke-------~~~~~ql~---~-----~cLsf~p~~~---------~a~~~~~se~~YE~ 298 (447)
T KOG4497|consen 255 ------------HDPTLHLLEKE-------TFSIVQLL---H-----HCLSFTPTDL---------EAHIWEESETIYEQ 298 (447)
T ss_pred ------------cCchhhhhhhh-------hcchhhhc---c-----cccccCCCcc---------ccCccccchhhhhh
Confidence 0000 000000 00000000 0 3344443221 00111100000000
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeC---CeEEEEECCCccEEEEEeCCCCCeE
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAAT 886 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~h~~~v~ 886 (1135)
. ...+. ....+... +.+ ++ .-.+.-++||+|..++|+-.| +.+.+||++..++...+. ...+|.
T Consensus 299 ~-----~~pv~---~~~lkp~t-D~p--nP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pir 365 (447)
T KOG4497|consen 299 Q-----MTPVK---VHKLKPPT-DFP--NP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIR 365 (447)
T ss_pred h-----hccee---eecccCCC-CCC--Cc-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hcccee
Confidence 0 00000 00000000 011 12 556778999999999999975 679999999877655543 556899
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCc
Q 001159 887 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 948 (1135)
Q Consensus 887 ~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 948 (1135)
...|+| +...|+.+.....+++|.......+.. .+.+-.|..+.|..+|..++-.+.|..
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 999999 777888888788899998765444433 334467999999999999999999874
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=2.9e-16 Score=184.06 Aligned_cols=371 Identities=22% Similarity=0.384 Sum_probs=279.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-ceeeeeEeeccc-CCEEEEEE-ecCCCeEEEEE-EcCCCcE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHV-GGVNDIAF-AHPNKQLCIVT-CGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~-~~v~~v~~-s~d~~~~~l~s-~~~d~~i 479 (1135)
...|...|.++.+.+.+..++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++++.. .++. +..|+.+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 136 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTV 136 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcce-EEeccCCCCccE
Confidence 45689999999999999999999999999999999875 333 444533 36777777 777763 3444 4459999
Q ss_pred EEEEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 480 KVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 480 ~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
.+||... ......+..|...|..++|+|.. ..+++++. |+.+++|+.........+..|...+.+++|+|++..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9999988 78888899999999999999876 57888875 99999999998777888888999999999999998444
Q ss_pred EE-ecCCCCCCeEEEEECCCCeEEE-EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce-EEEEeCCCCCCC
Q 001159 558 SC-GTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPA 634 (1135)
Q Consensus 558 ~~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 634 (1135)
.+ + .++.|.+||...+..+. .+.+|.. .. ...|++++..+++++.|+.+++|+...... +..+..| ...
T Consensus 215 ~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 286 (466)
T COG2319 215 ASGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSS 286 (466)
T ss_pred EEec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Ccc
Confidence 43 3 38889999999888888 6888776 33 338999998899999999999999987665 4444333 457
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 714 (1135)
+.++.|+|++..+++++.|+.+.+|+..+.. ......
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~------------------------------------------ 323 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT------------------------------------------ 323 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee------------------------------------------
Confidence 9999999988888889999899999876652 111110
Q ss_pred CCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEe-cc
Q 001159 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLAL-AS 793 (1135)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~-~~ 793 (1135)
...|...+ ..+.+.+++..++.+ ..
T Consensus 324 -----------------------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 349 (466)
T COG2319 324 -----------------------------------------------------LKGHEGPV-SSLSFSPDGSLLVSGGSD 349 (466)
T ss_pred -----------------------------------------------------ecccCCce-EEEEECCCCCEEEEeecC
Confidence 00022233 666663332445555 56
Q ss_pred cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEE-Ee-CCeEEEEECCC
Q 001159 794 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS-AS-GGKVSLFNMMT 871 (1135)
Q Consensus 794 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~-~~-dg~i~vwd~~~ 871 (1135)
|+.+.+|++.... ... ... . ...+..+.+++ ...+.. +. ++.+.+|+...
T Consensus 350 d~~~~~~~~~~~~----------------------~~~-~~~---~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 350 DGTIRLWDLRTGK----------------------PLK-TLE---G-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLST 401 (466)
T ss_pred CCcEEeeecCCCc----------------------eeE-Eec---C-CceEEEEEECC-CCCEEEEecCCCceEEEeccc
Confidence 7788888654321 000 011 1 22278888888 543443 34 79999999998
Q ss_pred ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 872 ~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
.........+...+....+++ ++..+++++.++.+++|+..+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 402 GSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CeeeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 888777765547899999999 888999999999999999987
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.6e-19 Score=180.63 Aligned_cols=294 Identities=13% Similarity=0.136 Sum_probs=217.4
Q ss_pred ecCCCCCCccccCCCcceee-EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccc
Q 001159 320 FAGVAHTPNVYSQDDLTKTV-VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~-~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
+...|....+|......... .......-.|.+++|+......+|+-+.|..+++|.-... ..+ + +
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~--V----------p 72 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPE--V----------P 72 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCc--c----------c
Confidence 34455556666554433322 2222233359999999987534444466778999975433 110 0 0
Q ss_pred hhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
... .+.+. .-.|++......|+++|+..+.|+|||++...+.+ .+.+|...|++|.++-.+. +||+++..|.
T Consensus 73 ~~~-k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gGd 144 (673)
T KOG4378|consen 73 RVR-KLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGGD 144 (673)
T ss_pred eee-ccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCCc
Confidence 000 12222 33344444445899999999999999999643333 6789999999999998888 8999999999
Q ss_pred EEEEEcCCCeeeeeecCCCC-CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecCCCCcEEEEEEcCCCCE-
Q 001159 479 IKVWDVVAGRKQYTFEGHEA-PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTR- 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~- 555 (1135)
|.|..+.++....+|....+ .|.-+.++|... .+|.+++.+|.|.+||+....+... ...|..+...++|+|....
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 99999999988888864434 455788988764 6788999999999999988777664 4567888899999997654
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA 634 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 634 (1135)
|++.|. |..|.+||.+.......+...+ +...++|+++|.+|++|...|.|..||++. ..++.++..|.. .
T Consensus 224 ~vsVG~----Dkki~~yD~~s~~s~~~l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--s 295 (673)
T KOG4378|consen 224 LVSVGY----DKKINIYDIRSQASTDRLTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--S 295 (673)
T ss_pred EEEecc----cceEEEeecccccccceeeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--c
Confidence 556665 8889999999887777766544 789999999999999999999999999986 557788877755 6
Q ss_pred cceEEEcCCC
Q 001159 635 SPRLRFNKEG 644 (1135)
Q Consensus 635 v~~~~~~~~~ 644 (1135)
|++++|-+..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999998865
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1e-18 Score=174.52 Aligned_cols=249 Identities=17% Similarity=0.260 Sum_probs=194.5
Q ss_pred ccCCCcceEEEEEcCCCC--eEEEEeCCCeEEEEEeCC-------------CCceeeeeEeecccCCEEEEEEecCCCeE
Q 001159 404 LNDAAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNP-------------TGELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~--~las~~~dg~i~iwd~~~-------------~~~~~~~~~l~~h~~~v~~v~~s~d~~~~ 468 (1135)
..+|.+.|+.+.-++-++ +.|+=+..|.|+||++.. ....++++++.+|.+.=..++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 456888899888888654 555557899999999853 1234566788899999999999994333
Q ss_pred EEEEEcCCCcEEEEEcCCCeee---eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCc
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 543 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~ 543 (1135)
.|+||.--+.|++|...+|.-. ..|.+|+..|-.++|+|..+ ..|++||.||+|+|||++.+.. -...+.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5889988899999999887643 35778999999999999987 6999999999999999998733 2344889999
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC---CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCC
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+.+.|+.+-.+|++|+. +|++.|||++. ++++..|+-|.. +|+++.|+|.. ..|+++|.|.+|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999998888864 89999999985 678889999988 99999999865 5677788999999999863
Q ss_pred Cc----------------eEEEEeCCCCCCCcceEEEcCC-CCEEEEEECCCcEEEEE
Q 001159 620 MN----------------MLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 620 ~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd 660 (1135)
.. +.+.+-.|.+...+..+.|++. ..++++.+-|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 22 1122333444557888999984 34667666675 44553
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=5.3e-19 Score=182.15 Aligned_cols=286 Identities=12% Similarity=0.146 Sum_probs=217.1
Q ss_pred cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe-EEEEeCCCeEEEEEeCCCCc-eee
Q 001159 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM-LGVAFSKHIVHLYTYNPTGE-LRQ 445 (1135)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~-las~~~dg~i~iwd~~~~~~-~~~ 445 (1135)
...++|||+...+..... .-......+.++.|+....+ +|+.+.|..|++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 448999998765432210 00112234999999987752 33345678899997654311 111
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
...+.+. .-.|++...... ++++||..++|+|||++...+.+.+++|...|+++.++..+ .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 1122222 233444433344 89999999999999999888888899999999999998765 89999999999999
Q ss_pred EeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC-CEE
Q 001159 526 WLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 603 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l 603 (1135)
..+.++.....+.... ..|.-+.|++..+.+++... .+|.|.+||.....++..+...+..+...|+|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 9999888877777664 46668999999888775543 389999999998888877765555588899999976 456
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCC
Q 001159 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
++.|.|..|.+||....+....+... .+...++|+++|.+|+.|+..|.|..||++..+..+..+..|...+.+++
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 77899999999999988877777653 26789999999999999999999999999998888888888887766543
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.5e-19 Score=206.45 Aligned_cols=263 Identities=12% Similarity=0.151 Sum_probs=208.2
Q ss_pred eeEEeecCCCCeeEEEEecCCCe---EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~---lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+.+..+......+.++|.+.|.. ++|.|..||.|.+||...- +.... .. .......|.+.|..+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~----------~~-~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANAS----------EE-VLATKSKHTGPVLGL 122 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcc----------hH-HHhhhcccCCceeee
Confidence 46667777789999999998886 6899999999999998752 10000 00 111256799999999
Q ss_pred EEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 415 VWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
.|++... +||+|+.||.|.|||+...+...... -..-.+.|.+++|+..-++ .|++++.+|.+.|||++..+.+-.+
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccc
Confidence 9999655 99999999999999998754332111 1124567999999988776 7999999999999999999888777
Q ss_pred cCCCC--CeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCC
Q 001159 494 EGHEA--PVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGE 566 (1135)
Q Consensus 494 ~~h~~--~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~ 566 (1135)
..|.+ .+..++|||+.. ..+++++.|. .|.+||++.... ..++..|...|.++.|++.+ .+|++++. |
T Consensus 201 s~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D 275 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----D 275 (1049)
T ss_pred ccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----C
Confidence 66654 477899999876 5666666554 499999987654 45678999999999999977 67777764 8
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCCc
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+.|.+|+.++++.+..+....+ .+..+.|.|... .+++++-||.|.|+.+....
T Consensus 276 ~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8999999999999999988555 899999999876 67778999999999987654
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=6.3e-19 Score=180.26 Aligned_cols=264 Identities=11% Similarity=0.133 Sum_probs=190.7
Q ss_pred CCeeEEEEecC-------CCeEEEEEeccceEEEEEcCCccccccCCceeecccc---cccchhhhhccCCCcceEEEEE
Q 001159 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA---ASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 347 ~~V~~v~~sp~-------g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
....|++|... |+ ++|.|+.|..|.|||+.-...+.- .+.+-.... .+.......-.+|+..|.+++|
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 34456666432 44 899999999999999864322210 000000000 0000012224579999999999
Q ss_pred cCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-eeec
Q 001159 417 GPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFE 494 (1135)
Q Consensus 417 spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~ 494 (1135)
+.+ ...||+||.|.+|++||+.++++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..++
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK 327 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE
Confidence 985 4588999999999999999998765 67789999999999998776 8999999999999999853222 2232
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcCCCCEEE-EEecCCCCCCeEEEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEW 572 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~~~~i~~w 572 (1135)
..+.|-.++|.|... ..++++..||+++-+|++.. +++..+..|...|.++++++.-..++ +++ .++.|.+|
T Consensus 328 -~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw 401 (463)
T KOG0270|consen 328 -FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLW 401 (463)
T ss_pred -eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEE
Confidence 567899999998765 68888899999999999987 67789999999999999999776655 444 48899999
Q ss_pred ECCCCeE--EEEeecccCCceeEEEecCCCCE-EEEEeCCCeEEEEECCCCceE
Q 001159 573 NESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 573 d~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
++..-.. +..-.-.-+ ...|.++.|+-.+ ++.||..+.+++||+.+...+
T Consensus 402 ~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9864332 221111112 3566777777654 555778888999999876544
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.2e-18 Score=173.22 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=185.8
Q ss_pred hccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
.+.||.++|..++|+| +...||+||.|.+|.||.+..+.. ......|.+|...|..++|.|.... .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 677899999999999999987643 2345578999999999999998877 789999999
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC-cEEEEEEcCCCCEE
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 556 (1135)
+|.+||+.+|+.+.++. |.+.|+++.|+. ||.++++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999987 999999999976 559999999999999999999988887766655 555667888888 6
Q ss_pred EEEecCCCCCCeEEEEECCCCeE---EEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCce-EEEEeCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1135)
++.|.++-.+.++-+||...-+. ...+.... .|.--.|++|.+.++.+| .|+.||.|.+....+ +..+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 76666777799999999875443 33333333 566677889988887655 899999999987553 333322222
Q ss_pred CCCcceEEEcCC
Q 001159 632 LPASPRLRFNKE 643 (1135)
Q Consensus 632 ~~~v~~~~~~~~ 643 (1135)
..+=..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 223456666664
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=9.2e-17 Score=167.46 Aligned_cols=490 Identities=11% Similarity=0.129 Sum_probs=295.1
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEE-EEEEec-----CCCeEEEEEEcCCCcE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAH-----PNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~-~v~~s~-----d~~~~~l~s~~~d~~i 479 (1135)
.|...|.|+.|+.+...+.+++.+..+.-||+.+... ... .+ ....|. .+-.-+ .++.-.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4777788999999888777776666666666654322 111 11 111111 111111 1111268888899999
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.+-+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.- ++-...++......|.|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999998865 77999999999999963 343444555567799999999999988877
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
. .+.+.+=.+.....+...+.|.+ -|.++.|++..+.+++||+|-..++||.. |..+..-..|.. +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeee
Confidence 4 45677777777777778889888 89999999999999999999999999976 455544444544 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|+ +.++.++.+ ++|+=..
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~p---------------------------------------------------------- 254 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSSP---------------------------------------------------------- 254 (737)
T ss_pred eccc-cceeeeeee-eeeecCC----------------------------------------------------------
Confidence 9999 666666543 4441110
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKL 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~i 799 (1135)
..+.| ..++||+||.+++.+++.|.+.+
T Consensus 255 ---------------------------------------------------~~GSi-fnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 255 ---------------------------------------------------RVGSI-FNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ---------------------------------------------------Cccce-EEEEEcCCCceeeccccCceEEE
Confidence 22344 88999999999999999887765
Q ss_pred EEeccccC-CCCCc--ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEE
Q 001159 800 WKWQRTER-NPSGK--ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 876 (1135)
Q Consensus 800 w~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~ 876 (1135)
--.-.... ....+ ......+.+-|+.++..-..++ +..+...++ .-.+|+++....|++|.-.......
T Consensus 283 A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~------p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpi 354 (737)
T KOG1524|consen 283 AYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEF------PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPI 354 (737)
T ss_pred eeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhC------ccceeeeee--ceeEEEEEeccEEEEEecCCccCcE
Confidence 32221111 00111 1111234455555554322111 444544443 4456777777889999877766555
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe--cCcCCC-e--EEEEEcCCCCeEEEE--cCCCcE
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNR-I--TGLAFSPTLNALVSS--GADAQL 949 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~-i--~~l~~s~d~~~l~s~--~~D~~i 949 (1135)
.+.+....+.-+.-+. ..++ ..+.-++.+|..+ |+..... ++..-. . ..+... ...|+.- .....+
T Consensus 355 iidgre~tr~lieq~e--k~fl--i~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvl 427 (737)
T KOG1524|consen 355 IIDGREDTRNLIEQGE--KYFL--ILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVL 427 (737)
T ss_pred EEeccccchhHhhhhh--hheE--EecCcEEEEEEec-CceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeE
Confidence 5555444332222221 1222 2233456666654 3322221 111110 0 122222 2234432 233457
Q ss_pred EEEeC-CCCceeceeeeecCCCC-CCCCCCceEEEEC----CCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCE
Q 001159 950 CMWSI-DKWEKLKSRFIQAPAGR-QSPLVGETKVQFH----NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPI 1021 (1135)
Q Consensus 950 ~iwd~-~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s----~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i 1021 (1135)
.++|. .+++.+. .|+ ......+..++.. ++.+.++. -.++.+.|=.+ +...-..+... ..-|
T Consensus 428 hlFd~istgk~qg-------Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmV 497 (737)
T KOG1524|consen 428 HLFDLISTGKRQG-------DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMV 497 (737)
T ss_pred EeccCCCCCcccC-------CccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhh
Confidence 78888 6655321 111 1111233333332 23334443 34455555444 22211111111 4567
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 1022 SSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 1022 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
..++|+...+ +++|-.|+++.||-..+-
T Consensus 498 htLawndttN-iLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 498 HTLAWNDTTN-ILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred hhhhhccccc-eeeeeccceEEEEEcCCc
Confidence 7889976555 677889999999998864
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=1.9e-18 Score=173.54 Aligned_cols=252 Identities=15% Similarity=0.219 Sum_probs=189.8
Q ss_pred ceEEEEEcC-----CCCeEEEE---eCCCeEEEEEe-CCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 410 SVNRCVWGP-----DGLMLGVA---FSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 410 ~V~~v~~sp-----d~~~las~---~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
.|+.++|.. +.++||+. +.-|...+.-+ ++|+.-.....+.||+++|..++|+|-+.. .|||||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455566533 45566653 22223333322 233333334456799999999999998776 899999999999
Q ss_pred EEEcCCC-------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC
Q 001159 481 VWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 481 iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 553 (1135)
||.+..+ +.+..+.+|...|.-++|||... +.|++++.|.+|.+|++.+++....+. |...|+++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998754 34567889999999999999865 799999999999999999999999888 99999999999999
Q ss_pred CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCceEEEEeCC
Q 001159 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+|++.+. |..|++||.++++.+..-.+|.+..-..+.|-.+|. +++.+ .+..+-+||..+.+.-..+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999874 888999999999999988888875556677888888 55543 6788999998875433222221
Q ss_pred CCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhh
Q 001159 630 GGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 669 (1135)
.....|.---|.+|.+++..++ .|+.||.|.+.+....+.
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeE
Confidence 2223455556788888776655 599999999987743333
No 173
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.1e-16 Score=174.03 Aligned_cols=243 Identities=11% Similarity=0.155 Sum_probs=169.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCC----
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG---- 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~---- 420 (1135)
+...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+.. +.-|...|+.|.|.|-.
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence 33457789999999 677776 35788889887776654 56689999999998731
Q ss_pred --------CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec---CCCeEEEEEEcCCCcEEEEEcCCCee
Q 001159 421 --------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1135)
Q Consensus 421 --------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 489 (1135)
-+||++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....+|.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 267888889999999999876554 6778899999999976 3333 566666788999999999999
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC------ceeEecCC-CC--------------------
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAP-GN-------------------- 542 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~-~~-------------------- 542 (1135)
............|+.+.|-...+ +..-+..|.+.+-+.-... ....+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh-~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRH-FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcce-EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88877666667778888865534 4444445555555432111 11111111 00
Q ss_pred -----cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC--CEEEEEeCCCeEEEE
Q 001159 543 -----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFW 615 (1135)
Q Consensus 543 -----~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iw 615 (1135)
....++|+|.-+.++.... ...+.++|++-...+....-..+ .+.-+.+-|++ ..+++.-.||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0113466776555444443 56799999998888777766555 55667777765 568889999999999
Q ss_pred ECCC
Q 001159 616 DMDN 619 (1135)
Q Consensus 616 d~~~ 619 (1135)
-.+.
T Consensus 302 vrk~ 305 (1062)
T KOG1912|consen 302 VRKE 305 (1062)
T ss_pred Eeec
Confidence 7664
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.8e-17 Score=162.32 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=167.4
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC---ceEEEEeecCCCEEEEE
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE---SAACIALSKNDSYVMSA 859 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---~i~~l~~s~dg~~la~~ 859 (1135)
|+..++++.+.+.-|++||..+++....-+ ...| .. ...+++|+|||..|..|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~-----------------------~ydh-~de~taAhsL~Fs~DGeqlfaG 176 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR-----------------------AYDH-QDEYTAAHSLQFSPDGEQLFAG 176 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh-----------------------hhhh-HHhhhhheeEEecCCCCeEeec
Confidence 566777888888888888765443321111 1112 22 33489999999999999
Q ss_pred eCCeEEEEECC-CccE---EEEE----eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEE
Q 001159 860 SGGKVSLFNMM-TFKV---MTMF----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 931 (1135)
Q Consensus 860 ~dg~i~vwd~~-~~~~---~~~~----~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l 931 (1135)
....|+|||+. .|.- ..++ .+..+-|.|++|+|.+.+.+|.|+...++-||.-..+.++..+-+|.+.|+.|
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 99999999994 3321 1222 12356789999999888899999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEcC-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEec-C-Cce
Q 001159 932 AFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-K-LEC 1007 (1135)
Q Consensus 932 ~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~-~-~~~ 1007 (1135)
.|.+||+.|++|+. |..|..||+..... .+-.+.+|...+..-......|+|++|+++ .+|.|++||+ . ++.
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 99999999999984 67799999987543 233334443211222234446999999996 8999999999 3 444
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
+..+. .|+..+..+++.|--.++++++..
T Consensus 333 ~sv~~---~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 VSVTG---NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccc---cccccccceecCcccceeeeccCc
Confidence 44443 347899999999998888887765
No 175
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=3.9e-17 Score=165.33 Aligned_cols=299 Identities=18% Similarity=0.233 Sum_probs=211.8
Q ss_pred cceEEEEEEecCCc-ceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 773 SKVVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
.++ .++.|.+++. .+++++.|..|++|.+........+.. ......+. .| ...|+++.|+|
T Consensus 14 ~pv-~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls--~H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 14 EPV-YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLS--RH-TRAVNVVRFSP 75 (434)
T ss_pred Cce-EEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeeccc--CC-cceeEEEEEcC
Confidence 445 8899988877 899999999999998876432111100 01111222 27 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEECC--------C--------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 852 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
+|..+|+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6899999765 2 345566788999999999999 899999999999999999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceee---eecCCCCCC------------CCCCce
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQS------------PLVGET 979 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 979 (1135)
|+....+..|...|..++|.|-++++++-+.|...+.+.+.......... .....++.. ...--.
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999977777766544322111 000001000 001224
Q ss_pred EEEECCCCcEEEEE-----ecCeE-----EEEec-C-CceeeccCCCCCCCCCEEEEEEee------------------C
Q 001159 980 KVQFHNDQTHLLVV-----HESQI-----SVYDS-K-LECSRSWSPKDALPAPISSAIYSC------------------D 1029 (1135)
Q Consensus 980 ~~~~s~dg~~l~~~-----~d~~v-----~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~------------------d 1029 (1135)
.++|+|||.++++. .++.+ ++|+- . .+....+... ..+...+.|+| -
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEecccccccccccccc
Confidence 67899999999982 13333 45554 1 1112222221 45666666665 1
Q ss_pred CCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1030 GLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1030 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+-.+|.+ ....|+|||.++..+++....-++. ..+-++|++ ||..|+..+.||...+-.+...+
T Consensus 312 rlvfaiA-t~~svyvydtq~~~P~~~v~nihy~---------~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 312 RLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYS---------AITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ceEEEEe-ecceEEEeccccccceEEEeeeeee---------eecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 1234555 4568999999998888877644332 233678888 88999999999988777666555
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=4.9e-17 Score=169.45 Aligned_cols=270 Identities=15% Similarity=0.204 Sum_probs=190.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE--cCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--GPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--spd~~~ 422 (1135)
|..-|.|+.|+.+.. ++.+++ |..+.+|.-.+.......... ...++.. -| +....- -.....
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p-------~df~pt~---~h---~~~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLP-------DDFVPTD---MH---LGGRSSGGGKGSDT 77 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCC-------cccCCcc---cc---ccccccCCCCCcce
Confidence 566788999999987 565544 666666654333222110000 0000000 01 000000 112357
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
++.++.||.+.|.+-.. + ......+|.+.|.+-.|+|||. -|+|+|+||.|++|. ++|-...++.-...+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~-r---VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-R---VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccc-h---hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 88899999999887554 2 2225678999999999999999 799999999999999 888776677667789999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++|.|+.+ +.+++.+ +.+.+=-+.....+.....|.+-|.++.|++..+.++++|. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99999875 4555544 45555566666778888999999999999999999999985 8889999965 666666
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
-..|.- +|++++|.|+ ..++.++. .++|+=. ...+.|..++|++||..++.|+..|.+.+=.
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeeeecC-------------CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 566655 8999999999 55665553 3444111 1234789999999999999999998876643
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.1e-17 Score=169.79 Aligned_cols=247 Identities=13% Similarity=0.171 Sum_probs=164.4
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.||.+.|+|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||.+.|.++.|-|......++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 47899999999999999999999999999999999876655543 3589999999999997555589999999999999
Q ss_pred EcCC----------CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeE---------ecCCCC
Q 001159 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVD---------YDAPGN 542 (1135)
Q Consensus 483 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~---------~~~~~~ 542 (1135)
|+.. ....+.+..|...|..++..|... +.+.+++.||+|+-+|++.... ... +...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9974 234455677999999999877654 7999999999999999986321 111 111112
Q ss_pred cEEEEEEcCCCCE-EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 543 ~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
...++..+|...+ |++|+. +...++||.+. .+..+.... . ..+.|.. .++.|+-|-....+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr--~lks~~s~~---~--~~~~pp~-------~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRR--VLKSFRSDG---T--MNTCPPK-------DCRCVRYFSPGHLK 263 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhh--hccCCCCCc---c--ccCCCCc-------ccchhheecCcccc
Confidence 5678899997654 556654 77789999632 111121110 0 0111110 11122222111110
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
...-...+ -...++-++|+|+|.-|++.-....|.++|+..++.....+
T Consensus 264 n~~gn~~~-~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 264 NSQGNLDR-YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred Cccccccc-ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00000000 00124668899999877777777799999998775444433
No 178
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=6.7e-17 Score=158.52 Aligned_cols=377 Identities=14% Similarity=0.162 Sum_probs=241.0
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCceEEE
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 625 (1135)
.+|||+|++++++. +-.+.+-|..+-+..+.|..-. .|.-+.|..|.-++++ ...|+.|.+|++...+--..
T Consensus 14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 57999999999997 4578888988877766666543 4677889999888777 56888999999998777777
Q ss_pred EeCCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccccc
Q 001159 626 VDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 704 (1135)
+... ...+.++.|+|||+.+. +...+-.|.+|.+.+..-..- .|
T Consensus 87 Ideg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~------------------------------ 131 (447)
T KOG4497|consen 87 IDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PH------------------------------ 131 (447)
T ss_pred eccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cc------------------------------
Confidence 7644 45789999999996555 555588999999877621100 00
Q ss_pred ccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC
Q 001159 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d 784 (1135)
....+ ..++|+||
T Consensus 132 ------------------------------------------------------------------pK~~~-kg~~f~~d 144 (447)
T KOG4497|consen 132 ------------------------------------------------------------------PKTNV-KGYAFHPD 144 (447)
T ss_pred ------------------------------------------------------------------cccCc-eeEEECCC
Confidence 01122 78899999
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe---C
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 861 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~---d 861 (1135)
|++.+..+.-.....+.+. .-+-|.. +.. +.. . .-..+.+.|+|||..+|+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~l-----l~~-f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWIL-----LKE-FKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHHH-----HHh-cCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9977666542111111100 0001111 110 110 1 45567789999999998754 2
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC--------------
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 927 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-------------- 927 (1135)
-.|..|.. .-.+..++|+| .+++||+|+.|+++|+.+--+.+...++- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 33333322 23578899999 89999999999999998876666554432 2111
Q ss_pred ------eEEEEEcCCCCeEEEEcCCCcEEEEeCCCC--c----eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec
Q 001159 928 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKW--E----KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 995 (1135)
Q Consensus 928 ------i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~--~----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 995 (1135)
..++.|.|.. -...+|..+.- + ..+...++.+.....+.-++.-++||+|..++++-.|
T Consensus 268 ~~~ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 1234444332 12233332210 0 0000111111122223356788999999999999544
Q ss_pred ---CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCC
Q 001159 996 ---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1071 (1135)
Q Consensus 996 ---~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1135)
+.+-+||+ +.+....+.. ..+|.++.|.|....|+.......+++|.......++.-. .+.
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-----------~GF 403 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-----------KGF 403 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-----------CCc
Confidence 67899999 4444333332 5689999999999888888888889999988654443211 124
Q ss_pred ccEEEEecCCCCCEEEEEecCCc
Q 001159 1072 HPLVIAPHPSEPNQIALGMSDGA 1094 (1135)
Q Consensus 1072 ~~~~~~~~~~~~~~l~sg~~dg~ 1094 (1135)
....+.|.- +|..++-.+.|..
T Consensus 404 ~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecC-CCcEEEEEcCCce
Confidence 455677776 5677887788764
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.2e-16 Score=146.60 Aligned_cols=286 Identities=12% Similarity=0.140 Sum_probs=195.3
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+-+++|.+++|+++..+|.|.+..+..-.... ....|+......+. | ++++..++|. ..+|
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s-------------a~~~gk~~iv~eqa--h-dgpiy~~~f~--d~~L 75 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS-------------AEPPGKLKIVPEQA--H-DGPIYYLAFH--DDFL 75 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccc-------------cCCCCCcceeeccc--c-CCCeeeeeee--hhhe
Confidence 566789999999999999999999876421100 01112221111233 8 9999999998 5688
Q ss_pred EEEeCCeEEEEECCCccE------EEEE--eC-----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 857 MSASGGKVSLFNMMTFKV------MTMF--MS-----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 857 a~~~dg~i~vwd~~~~~~------~~~~--~~-----h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
++++||.|+=|....... +-.. .- ...+|++|-..|..+. +++++.|+.++-||+++|+...+++|
T Consensus 76 ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 76 LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcC
Confidence 889999999987653221 1111 11 2356899999995554 44566899999999999999999999
Q ss_pred cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 924 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 924 h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
|++.|-+++--.....+.||+.||++++||.++++...............+...-.-.+..-+..+|+.+....+.+|.+
T Consensus 155 HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 155 HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEec
Confidence 99999999984455568899999999999999988654332222111111111223356677788999999999999999
Q ss_pred -CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCC
Q 001159 1004 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1004 -~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1135)
..++...+.. .+++..+.|..| .+++++..++|.-|.+. |.+...+.... +.-+..++.-+|
T Consensus 235 rsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s--------~~c~s~s~~~~p-- 297 (325)
T KOG0649|consen 235 RSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVES--------TACYSASWQTSP-- 297 (325)
T ss_pred cCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCc--------cceeeecccCCc--
Confidence 6666666554 567888888665 56777788899999987 55555544331 112222333344
Q ss_pred CCEEEEEecCCcEEEE
Q 001159 1083 PNQIALGMSDGAVHVV 1098 (1135)
Q Consensus 1083 ~~~l~sg~~dg~v~~W 1098 (1135)
-++|-.++-.+.+.++
T Consensus 298 ~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEEecccceeeeee
Confidence 2566667777777765
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=158.31 Aligned_cols=308 Identities=14% Similarity=0.162 Sum_probs=193.3
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
...++.|.. .++++.|..++ +|++|..-|.|.+|++.+......+..+.. ..|+.+..-|+ ..+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEEE
Confidence 445666766 89999998876 599999999999999999988888875443 36788888886 567888999999999
Q ss_pred EcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccc
Q 001159 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1135)
Q Consensus 660 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
++.-+ .. ...|...+ +.+ .|-.+ ++.++++.... ....++..
T Consensus 83 ~ia~s-~~---i~i~Si~~-----nsl-----gFCrf----------Sl~~~~k~~eq------------ll~yp~rg-- 124 (323)
T KOG0322|consen 83 TIAYS-AF---ISIHSIVV-----NSL-----GFCRF----------SLVKKPKNSEQ------------LLEYPSRG-- 124 (323)
T ss_pred EccCc-ce---EEEeeeec-----ccc-----ccccc----------eeccCCCcchh------------heecCCcc--
Confidence 98764 11 11111111 100 11100 01111100000 00000000
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec-CCc--ceeEecccceeeeEEeccccCCCCCccccc
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN-SGL--SLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-dg~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
. ..+.+-|.. ...+.....-+.....+.+ .+..+.. ++. .+++|-++|.+.+||+..+....
T Consensus 125 ---s-de~h~~D~g---~~tqv~i~dd~~~~Klgsv-mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~------- 189 (323)
T KOG0322|consen 125 ---S-DETHKQDGG---DTTQVQIADDSERSKLGSV-MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII------- 189 (323)
T ss_pred ---c-chhhhhccC---ccceeEccCchhccccCce-eeeeccccccceEEEEEeccCCeEEEEEccCCceee-------
Confidence 0 001111111 1111111111112233333 4444222 233 35667779999999987642111
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC--ccE--EEEEeCCCCCeEEEEEe
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFH 891 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~--~~~--~~~~~~h~~~v~~l~~s 891 (1135)
+......+...... | ..++.++.|.+.-..=++|+ +..+..|++.. +.+ .....-....|..+.+-
T Consensus 190 ------~~~~~~kv~~~~as--h-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR 260 (323)
T KOG0322|consen 190 ------QLPQSSKVESPNAS--H-KQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR 260 (323)
T ss_pred ------ccccccccccchhh--c-cCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc
Confidence 11111111111222 7 89999999988666666666 77888888763 332 22233345578899999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 892 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 892 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
| |++++||+++|+.||+|+..+.+++..++.|.+.|.+++|+||...+|++|.|+.|.+|++
T Consensus 261 p-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 P-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9 9999999999999999999999999999999999999999999999999999999999986
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=5.7e-18 Score=178.64 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=192.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC-----CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|...|.+++|.|....|++|+.||.+.+|++. ....+.+..++.+|.++|.|+++.++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2345677889999999999999999999 8999999999
Q ss_pred EEEEEcCCC----------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC--CCcEEE
Q 001159 479 IKVWDVVAG----------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTM 546 (1135)
Q Consensus 479 i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~ 546 (1135)
|+.|++... .....+.||.+.|+.+++++.. ..|++++.||+++.|+...... ..+... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999965411 2334678999999999999887 6799999999999998766554 223222 223445
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC------CceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
+.+......+..++. ..+.-.+.+...+..+..+..... ..+..+.+.|.+...+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred EeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 555433212222211 122233444444444444432211 24667888999999999999999999999999
Q ss_pred ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++.....|.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 522 ~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 99988887644 7999999999999999999999999998655
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.1e-17 Score=159.84 Aligned_cols=276 Identities=12% Similarity=0.147 Sum_probs=196.9
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEEEEeCCCeEEEEEe
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iwd~ 437 (1135)
..+|++-..|.|++||..+++.+.. ++++...++.++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3678888899999999999887764 778899999999987 4678999999999999999
Q ss_pred CCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEc----CCCcEEEEEcCCCee-eeee-cCCCCCeeEEEeeccCC
Q 001159 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYTF-EGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 438 ~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~ 510 (1135)
+........ ....|. .+-.+++..-.++ .+++|. .|-.|.+||++..+. +..+ ..|.+.|++++|+|...
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987655433 344555 4566777665565 677765 467899999998776 5544 56999999999999866
Q ss_pred ccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 511 IQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 511 ~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
++|++||.||-|.+||+..... +.....+...|.++.|..++ +.|.+-+. .....+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence 8999999999999999976533 22334466789999999887 34555443 667999999988765544332
Q ss_pred cCC---------ceeEEE-ecC-CCCEEEEEeC-CCeEEEEECC---CC---ceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 587 RKR---------SLGVVQ-FDT-TRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 587 ~~~---------~v~~i~-~s~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
.-. .-+-+. .+| +...++.++. -+...++-+. ++ +.+..+.++ +...|.++.|...+.++.
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~ 332 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLY 332 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceee
Confidence 100 000111 123 3345555443 5555555443 22 333444432 334688999998999999
Q ss_pred EEECCCcEEEEEcCC
Q 001159 649 VTTSDNGIKILANSD 663 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~ 663 (1135)
+|+.||.+.+|....
T Consensus 333 TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 333 TGGEDGLLQAWKVED 347 (376)
T ss_pred ccCCCceEEEEecCC
Confidence 999999999998643
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=3.2e-16 Score=151.38 Aligned_cols=291 Identities=15% Similarity=0.269 Sum_probs=209.7
Q ss_pred eeEEeecCCCCeeEEEEe--cCCCeEEEEEec----cceEEEEEcC--CccccccCCceeecccccccchhhhhccCCCc
Q 001159 338 TVVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEVG--SRERLAHKPFKVWDISAASMPLQNALLNDAAI 409 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~s--p~g~~lla~g~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 409 (1135)
+.+..+...-.+.++.|| |+.+..||.|+. .+.|.|-.+. +++.+...+ ..|.-
T Consensus 36 ~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~Y 97 (364)
T KOG0290|consen 36 KEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPY 97 (364)
T ss_pred ceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCC
Confidence 345566666789999999 666677888873 3455555443 444433221 25889
Q ss_pred ceEEEEEcCCCC-----eEEEEeCCCeEEEEEeCCCC-ceeeeeEe-----ecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 410 SVNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLEI-----DAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 410 ~V~~v~~spd~~-----~las~~~dg~i~iwd~~~~~-~~~~~~~l-----~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+++.+.|.|+.+ +||+++ ..+++|.+...+ .+.....+ ..+.+++++..|+.-..+ +|.+.+-|-+
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTT 174 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTT 174 (364)
T ss_pred CccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCe
Confidence 999999999874 666653 359999998522 22211122 245678999999986655 8999999999
Q ss_pred EEEEEcCCCee---eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCC--CCcEEEEEEcCC
Q 001159 479 IKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSAD 552 (1135)
Q Consensus 479 i~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~--~~~i~~~~~s~~ 552 (1135)
..|||+++|.. ...+-.|...|..++|... ..+.+++.+.||.+|+||++..+.-. .+... ..+...++|++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence 99999998733 4567789999999999874 34799999999999999999866533 33332 347778888875
Q ss_pred C-CEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCce------E
Q 001159 553 G-TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------L 623 (1135)
Q Consensus 553 ~-~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~ 623 (1135)
. +++++... ....|.+.|++. ...+..+++|.. .|+.++|.|.. ..|+++|.|..+.+||+...-. +
T Consensus 254 DpnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 254 DPNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CchHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 4 56666554 255699999985 567888999988 99999999964 6788999999999999986322 2
Q ss_pred EEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEE
Q 001159 624 TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 658 (1135)
..+. ....|+.+.|++ .+..++.+... .+.|
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 2222 223799999997 66788777654 4444
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.5e-17 Score=155.87 Aligned_cols=288 Identities=15% Similarity=0.194 Sum_probs=200.3
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhcc-CCCcceEEEEEc
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWG 417 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s 417 (1135)
...+. |.+.|+++.|-.+++ |.+|...|.|++|++++...+.. +. .|...|+.+.--
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~ 65 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSI 65 (323)
T ss_pred eeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeec
Confidence 34444 888999999999996 67899999999999998765432 23 367789999988
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCC-----CeE--EEEEEcCCC-cEEEEEcCCCee
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN-----KQL--CIVTCGDDK-MIKVWDVVAGRK 489 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~-----~~~--~l~s~~~d~-~i~iwd~~~~~~ 489 (1135)
|+ ..|.+-+.|+.+.+|++..+..+. -|.-.++++-|++.. +.. .++.-++.. .+++=|......
T Consensus 66 p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 66 PN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred CC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 88 567788899999999998754332 355556667666531 100 111111110 012222211112
Q ss_pred eeee----cCCCCCeeEEEeeccCC-ccEEEEEEcCCeEEEEeCcCCCcee----------EecCCCCcEEEEEEcCCCC
Q 001159 490 QYTF----EGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 490 ~~~~----~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~s~~~~ 554 (1135)
+... .+..+.+.+..+..... .-++++|-.+|.+.+||+.++..+. ....|..+|.++.|.+...
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 2211 12345666666432221 2356778899999999999874433 3345677899999987666
Q ss_pred EEEEEecCCCCCCeEEEEECCC--CeE-EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESE--GAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.=++++. +..+..|+++. +.+ ++....-....|..+.+-||++.++++|.|+.||+|..++.+++..++.|..
T Consensus 219 rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 219 RGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred CCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence 6566654 55677887763 332 2222222333688899999999999999999999999999999999998864
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.|++++|+|+..++|.++.|+.|.+|++
T Consensus 295 --gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 --GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999986
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.1e-16 Score=145.08 Aligned_cols=281 Identities=19% Similarity=0.273 Sum_probs=193.4
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.|.+-++||.++ +|++|+.+|.|.+..+.+-..-..+ ...+.++ ....+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~-------~~gk~~i--v~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE-------PPGKLKI--VPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC-------CCCCcce--eeccccCCCeeeeeee--hhheeecc
Confidence 577778999998 7889999999999998642111000 0001111 1146899999999998 45677765
Q ss_pred CCCeEEEEEeCCCCc-e--eeeeE--eeccc-----CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC
Q 001159 428 SKHIVHLYTYNPTGE-L--RQHLE--IDAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~-~--~~~~~--l~~h~-----~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1135)
. |.|+-|....... . +...+ ...|. -.|++|...|... -+++++.|+.++-||+++|+..++++||+
T Consensus 80 d-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 D-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred C-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 4 9999998765332 1 11000 11222 2588999998877 46666679999999999999999999999
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC----------CCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+.|.++.--... ..+++|+.||++|+||.++.+....+... +.+|-+++. +..+|++|+ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999863332 57999999999999999999887754322 235666654 567898886 45
Q ss_pred eEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC-CE
Q 001159 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 646 (1135)
.+.+|+++..+....|.-.. .+..+.|.. +.+++++..+.|.-|.+. |..........+ ..++..++... +.
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 69999999988888776543 466677764 568888888889999876 444444443322 34444554333 34
Q ss_pred EEEEECCCcEEEE
Q 001159 647 LAVTTSDNGIKIL 659 (1135)
Q Consensus 647 l~~~~~dg~i~iw 659 (1135)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455566666665
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=158.19 Aligned_cols=292 Identities=12% Similarity=0.140 Sum_probs=211.0
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccccc-CCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
+.|.+-|+++.||.+++ +||+|+.|..+++|+++..-.... +++.+ .-..|...|.|++|...++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCCe
Confidence 34888999999999997 799999999999999874321111 11110 1234668999999999999
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeeccc---CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-ee--eeecC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEG 495 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~---~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~~ 495 (1135)
.+.+|+.+++|...|+.+.+.+. . ..|. +.|..+..+|-.. .|++.+.++.|.+||.+... .. ..+..
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~---V-~~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIY---V-ANENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred eEecCCCcceeEeeecccceeee---e-ecccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 99999999999999999976553 2 2344 4899999999977 89999999999999988654 22 22223
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-E------ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-D------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
......++.|+|... .+|++.+..+-+-+||.+...... . +......-.++.|+|+|+.+++.-. ...
T Consensus 193 ~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~ 267 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKC 267 (609)
T ss_pred CCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCC
Confidence 445677888999765 788999999999999998655432 1 1111223356789999999987643 333
Q ss_pred EEEEECCCCeE-EEEeeccc-----CCceeEEEecCCCCEEEEEeCCCeEEEEECCCC----------------------
Q 001159 569 LVEWNESEGAI-KRTYSGFR-----KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM---------------------- 620 (1135)
Q Consensus 569 i~~wd~~~~~~-~~~~~~~~-----~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------- 620 (1135)
-.+||+.+..+ +..+.... ...+.+++|..|. .+++|+.+-.|++|.+...
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 45677766443 22332111 1246667787654 4899999999999987531
Q ss_pred -ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 621 -NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 621 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+.+..+.+|.. .++.+.|+|...+|++.+-.+.++||...
T Consensus 347 ~~~~~VLrGHRS--v~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 347 EKELTVLRGHRS--VPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cceeEEEecccc--cccceeecCCcceEeccchhhheeccccc
Confidence 12345566544 68999999999999999999999999753
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.3e-17 Score=160.75 Aligned_cols=292 Identities=13% Similarity=0.142 Sum_probs=198.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe--cCCC-CcEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 545 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 545 (1135)
.++++...|.|++||..+++.+..|+++...++.+.|........+.+|+.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999999999999999999999999987555588999999999999999987765543 3333 3566
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE-EEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCc--
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-- 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1135)
+++..-.++.++++..-...+-.|.+||++..+. ++.+...+...|+++.|+|.. +.|++|+.||.|.++|++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667778887765555577899999998766 666654444499999999965 788999999999999997643
Q ss_pred --eEEEEeCCCCCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCC
Q 001159 622 --MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 622 --~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 698 (1135)
++.++.. ...|.++.|..++ +.|.+-+..++..+|+++.+.. ...++....... -
T Consensus 202 DaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~-----------------d- 259 (376)
T KOG1188|consen 202 DALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSAD-----------------D- 259 (376)
T ss_pred hhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhh-----------------h-
Confidence 2233322 2358899998866 5688888999999999998842 222211100000 0
Q ss_pred ccccccccCCCCCCCCCCCCCccccccccCCCCcccc-ccccccccc-ccccccccCCcCCccceeEeecCCcccccceE
Q 001159 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD-VKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
.+..+ ...+..+.....+ +...+++.+ ++..++-+..................|..-|
T Consensus 260 --------~r~~~-----------~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV- 319 (376)
T KOG1188|consen 260 --------LRKED-----------NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV- 319 (376)
T ss_pred --------HHhhh-----------hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH-
Confidence 00000 0000001110111 122333332 5555555554333333333344443444444
Q ss_pred EEEEEecCCcceeEecccceeeeEEe
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
.++.|...+..+.+|+.||.+.+|..
T Consensus 320 R~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 320 RDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHHhhhcccceeeccCCCceEEEEec
Confidence 88999999999999999999999974
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.5e-17 Score=173.80 Aligned_cols=268 Identities=13% Similarity=0.196 Sum_probs=194.2
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.++. |.+.|+.++|.|... .|++++.||.+.+|+++....-... ...+...+.+|.++|.|++++++
T Consensus 288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n 355 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSN 355 (577)
T ss_pred eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCC
Confidence 3555 889999999999998 6889999999999999442111110 11122337899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCC-------ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
++.+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++|+.||+++.|+...... .+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cc
Confidence 9999999999999999665221 1122336779999999999999888 799999999999999766554 44
Q ss_pred ecCC--CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-------CCcEEEEEEcCCCCEEEEEecCC
Q 001159 493 FEGH--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 493 ~~~h--~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
|..- .+.-.++.+..... ...++...-+.--+++++.......+... ...+..+.+.|.+...+++..
T Consensus 433 f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-- 509 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-- 509 (577)
T ss_pred cCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc--
Confidence 4322 22334444432211 12222222233333344433333332221 125677888899988888864
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus 510 --d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 --DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred --CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 88999999999999999999888 8999999999999999999999999999877766655544
No 189
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=3.3e-16 Score=151.13 Aligned_cols=256 Identities=14% Similarity=0.227 Sum_probs=186.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecc-------ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.|.++|+.++-+|-.+++|++...+ ..+.||.+....... +...|+ ....+-..+-+.|.|+.|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE-------~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE-------CVASLDTEAVGKINCVEW 131 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh-------HhhcCCHHHhCceeeEEE
Confidence 3678999999999998899987542 257888876432211 111110 111112245668999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeee---EeecccCCEEEEEEec--CCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~---~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.|++..||+-. |..|.+|++..+..+.... .-.+|....++-+|+| |+. .+++.+ |+++..||+++.++..
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhc
Confidence 99999999875 7889999999876521110 1123566788899998 666 566655 8999999999888776
Q ss_pred eec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEE-EEecCCCCCCe
Q 001159 492 TFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESH 568 (1135)
Q Consensus 492 ~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~~~~~~ 568 (1135)
.+. .|...|..+.|+|+.. .+|++|+.||.|++||.+..+. +..+..|.++|.++.|+|.-..|+ +++. |..
T Consensus 208 sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~ 282 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSA 282 (370)
T ss_pred chhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Cce
Confidence 664 5888999999999865 7899999999999999987654 568899999999999999766555 5554 677
Q ss_pred EEEEECCC-----------------------------CeEEEEeecccCCceeEEEecCCCCE-EEEEeCCCeEEEEECC
Q 001159 569 LVEWNESE-----------------------------GAIKRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 569 i~~wd~~~-----------------------------~~~~~~~~~~~~~~v~~i~~s~~~~~-l~~~~~dg~i~iwd~~ 618 (1135)
|.+|.... ...+.++..|.+ .|.+++|+.-..+ +++-+.||.+.|=.+.
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 88885521 112346677777 8999999976665 4557899999886654
No 190
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.7e-15 Score=162.36 Aligned_cols=496 Identities=16% Similarity=0.179 Sum_probs=289.6
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCC----------CeEEEEEEcCCC
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDK 477 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~----------~~~~l~s~~~d~ 477 (1135)
...-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. .+++|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3346788999887 6677655 457888877755444 677899999999998732 345789999999
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCc--cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC-CCC
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGT 554 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 554 (1135)
.|.+||...+..+..+..|..++..++|.+..+. ..|+.-.....+.+|+.++++.............|+.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9999999999999999999999999999876543 4677778889999999999999988888777888888888 444
Q ss_pred EEEEEecCCCCCCeEEEEECC-------CCeEEEEeecccC-----------Cc-------------eeEEEecCCCCEE
Q 001159 555 RLFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRK-----------RS-------------LGVVQFDTTRNRF 603 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~-----------~~-------------v~~i~~s~~~~~l 603 (1135)
.+..-+. .|.+.+-+.- .|+..+.-..|.+ .. ...++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 4443332 3444444321 1222222222111 00 0125678877666
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC--CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccC
Q 001159 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
+.......+.++|++-..++.......+ .+.-+.+-|+ ...|.+.-.||.+.+|--+.....++.-..+-..
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~---- 319 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSM---- 319 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcc----
Confidence 6666778899999999999988887655 3455666664 4578899999999999754331111111000000
Q ss_pred CCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccce
Q 001159 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~ 761 (1135)
|+ ..++
T Consensus 320 ---------------------------------------------------------------------dl-----~~Q~ 325 (1062)
T KOG1912|consen 320 ---------------------------------------------------------------------DL-----GEQV 325 (1062)
T ss_pred ---------------------------------------------------------------------cc-----ccce
Confidence 00 0000
Q ss_pred eEeecCCcccccceEEEEEEecC-CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 762 KALRLPDSIAASKVVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~~s~d-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
..+... .+-.+ ...+..|. ...+++.-++|...+|.+..+..+.++......-..-+|.......
T Consensus 326 ~~vr~m---~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------- 391 (1062)
T KOG1912|consen 326 HVVRPM---EEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------- 391 (1062)
T ss_pred EEEeec---hhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee----------
Confidence 000000 00000 11122222 2223333444555555554332222211100000000000000000
Q ss_pred CCceEEEEeecCCCEEEEEeCCeE--EEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSASGGKV--SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i--~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
-....-+.+|.||. -+.|.+ ++--+.... .+.....+. +....-| ++|.|+..|+|.++|+.++...
T Consensus 392 v~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t--~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~ 460 (1062)
T KOG1912|consen 392 VGKTSLISLSDDGS----HSSGSTCVRMRPMPELT--KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVA 460 (1062)
T ss_pred hhhccccchhhcCC----CCCCceeeecccCcccc--eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhh
Confidence 00000111222220 001110 000000000 000101111 1112223 8999999999999999999999
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEc----------CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
+.+..|.+.|.++.|--... |++.+ --+.+.+-|+.+|-....+-++.... .+|..+..|.-|+
T Consensus 461 ~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~ 534 (1062)
T KOG1912|consen 461 ASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGR 534 (1062)
T ss_pred hhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCc
Confidence 99999999999999975544 44332 12347788888876443322222221 6899999999999
Q ss_pred EEEEE-ecCeEEEEec-CCceeeccCCCCCCCCC-EEEEEEe
Q 001159 989 HLLVV-HESQISVYDS-KLECSRSWSPKDALPAP-ISSAIYS 1027 (1135)
Q Consensus 989 ~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~-i~~~~~s 1027 (1135)
||++. .+.-+.+||+ ...+++.... .-+ |+.+.|+
T Consensus 535 yLai~Fr~~plEiwd~kt~~~lr~mS~----a~P~it~leWs 572 (1062)
T KOG1912|consen 535 YLAILFRREPLEIWDLKTLRMLRLMSL----ALPLITVLEWS 572 (1062)
T ss_pred eEEEEecccchHHHhhccchHHHHHhh----cCCcEEEEeec
Confidence 99994 7889999999 5444444322 334 8899998
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=182.92 Aligned_cols=279 Identities=16% Similarity=0.275 Sum_probs=216.6
Q ss_pred eecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 342 TLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 342 ~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
.+.|...|.|+.|...|. ++++|+.|..|+||.++++.++.+ ..||.+.|+.++.+.+.-
T Consensus 186 LlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhh
Confidence 344888999999999997 688999999999999999988876 789999999999999999
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee---ec-CCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE-GHE 497 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~-~h~ 497 (1135)
++|+++.|..|++|.+..+..+. .+.+|++.|++++|+|- .+.+.||++++||.+-.-.+.. +. ...
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccc
Confidence 99999999999999999997766 78899999999999985 4678899999999871111111 11 123
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC-EEEEEecCCCCCCeEEEEECCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
..+.++.|.. ++..++|++.|+.-..|.+..... +...+.-+.++.+.. +.+++- .+..+++|++.+
T Consensus 317 ~~~~s~~~~~--~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 317 DLVDSILFEN--NGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYT 384 (1113)
T ss_pred cceeeeeccc--cccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeeccc
Confidence 4555666543 457899999999988886543221 111222222333333 222332 266789999999
Q ss_pred CeEEEEeecccCCceeEEEecCCCCEEE-EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCc
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
|.+.+.+.+|.+ .+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+...+|++||..++...+-|.
T Consensus 385 g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 385 GQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred chhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCc
Confidence 999999999988 899999999776554 5899999999999999888777633 235778899999999999988999
Q ss_pred EEEEEcCCC
Q 001159 656 IKILANSDG 664 (1135)
Q Consensus 656 i~iwd~~~~ 664 (1135)
+.|.....+
T Consensus 462 l~i~g~gqs 470 (1113)
T KOG0644|consen 462 LYILGTGQS 470 (1113)
T ss_pred eEEeccCCC
Confidence 999876444
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.3e-16 Score=156.00 Aligned_cols=300 Identities=15% Similarity=0.184 Sum_probs=218.8
Q ss_pred eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC------CCeEEEEeecccCCceeEEEecCCCCEEEEEeC
Q 001159 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 535 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 608 (1135)
..+..|.+.|.++.|+.++++|++|+. |..+++|++. +.+++.....|+...|.|++|......+++|+.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 345678889999999999999999985 7889999985 346666666666558999999999999999999
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
+++|...|+.+.+.+..+......+.|+.+..+|-.+.+++.+.++.|.+||..........+-..
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-------------- 191 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-------------- 191 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec--------------
Confidence 999999999999999988877666789999999999999999999999999987652111100000
Q ss_pred CCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCC
Q 001159 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 768 (1135)
.
T Consensus 192 ----------------------------------------------------------------------------N--- 192 (609)
T KOG4227|consen 192 ----------------------------------------------------------------------------N--- 192 (609)
T ss_pred ----------------------------------------------------------------------------C---
Confidence 0
Q ss_pred cccccceEEEEEEecCCcce-eEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEE
Q 001159 769 SIAASKVVVRLIYTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 847 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l 847 (1135)
..... ..+.|+|....| ++.+..+-+-+||+.......... ....+ ++. . ...-..+
T Consensus 193 --~~~~F-~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~----------~~~~~------L~~--~-~~~~M~~ 250 (609)
T KOG4227|consen 193 --SGKNF-YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR----------SMFKG------LPQ--E-NTEWMGS 250 (609)
T ss_pred --CCccc-eeeeecCCCceeEEeccccCCCCceeeccccchHHhh----------hcccc------Ccc--c-chhhhhe
Confidence 01111 677788866554 455567888899876432211100 00000 100 0 2334678
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCC-------CeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----- 914 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 914 (1135)
.|+|+|..+.+-. ...-.+||+.+..+..--..|.. .+.+++|.- ...+++|+.+-.|++|.+..
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCcccc
Confidence 8999999888776 44466788877555433222332 467888985 35599999999999998752
Q ss_pred ------------------ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 915 ------------------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 915 ------------------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.+.+.+|+||..-+..+.|+|...+|++.+-.+.++||.--
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 12345789999999999999999999999999999999643
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=5.1e-15 Score=164.48 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=162.2
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECC-CccE--EEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMM-TFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~-~~~~--~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~ 914 (1135)
......++++||+++|++++ ++.|.+|++. +++. +.... ..+....++|+| ++++|++++ .++.|.+|++++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34566789999999998775 6889999996 3433 22222 334567899999 788777766 488999999974
Q ss_pred c----eeeEEecCcCCCeEEEEEcCCCCeEEEE-cCCCcEEEEeCCCCceece---eeeecCCCCCCCCCCceEEEECCC
Q 001159 915 D----EVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 915 ~----~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
. +.+..+.+ .....+++++|++++++++ ..++.|.+||+.+...+.. .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 3 22333332 3346778999999988554 4679999999987432211 01111122 34578999999
Q ss_pred CcEEEEE--ecCeEEEEecC--Cce---eeccCCC---CCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCceeeee
Q 001159 987 QTHLLVV--HESQISVYDSK--LEC---SRSWSPK---DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 987 g~~l~~~--~d~~v~vwd~~--~~~---~~~~~~~---~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~~~~~~ 1055 (1135)
|++++++ .++.|.+|+++ ... +..+... ..+......++|+|||++|+++.. ++.|.+|+++.......
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 37999999993 112 2222111 011223346899999999998854 78999999965322111
Q ss_pred eCCceeccccccCCCCccEEEEecCCCCCEEEEEec-CCcEEEEecCCCc
Q 001159 1056 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS-DGAVHVVEPSDAE 1104 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~v~~W~~~~~~ 1104 (1135)
+..+. +.. ..+..+.++| ||++|++++. +++|.+|++....
T Consensus 266 ~~~~~--~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 266 FEGHQ--PTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EeEEE--ecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCC
Confidence 11111 111 2344678888 6778877665 8999999886443
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=2e-16 Score=152.66 Aligned_cols=215 Identities=19% Similarity=0.342 Sum_probs=163.6
Q ss_pred eeeEEeec--CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 337 KTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~~~--h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
-+++..+. +-+.|.|+.|.|++..+++. .|..|.+|+++.+..+.. .+....-.+|....++-
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-------------ev~ss~s~e~~~~ftsg 176 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-------------EVLSSESAEMRHSFTSG 176 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-------------eecccccccccceeccc
Confidence 44555565 45699999999999865443 388999999998776321 01111123467778899
Q ss_pred EEcC--CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-Ceeee
Q 001159 415 VWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY 491 (1135)
Q Consensus 415 ~~sp--d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~ 491 (1135)
+||| ||..+++. .|+++..||+++.++... .-.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..++.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCcccc
Confidence 9999 78888776 678899999998765443 23478889999999999877 899999999999999985 55788
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-----------------------------CceeEecCCCC
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAPGN 542 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~ 542 (1135)
++.+|...|+++.|+|..+ +++++|+.|..|.+|....- +.+.++..|..
T Consensus 253 el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 9999999999999999887 89999999999999954221 11225666788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.|++++||.-..++++.-. -||.+.|=.+
T Consensus 332 SVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred ceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 9999999998887765432 2666666443
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.8e-17 Score=168.99 Aligned_cols=298 Identities=17% Similarity=0.248 Sum_probs=234.5
Q ss_pred EEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 340 ~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
...|. |.+-|..|.|+..|. +|++|+.|..|.+||...+..... ...||...|..-.|-|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccC
Confidence 34455 999999999999998 799999999999999998876543 1468999999999988
Q ss_pred --CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec--
Q 001159 419 --DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-- 494 (1135)
Q Consensus 419 --d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 494 (1135)
+.+.|++++.||.+++=.+...+.+.....+..|.++|.-++.-|+... .|.|++.|+.+.-.|++.+.....+.
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeee
Confidence 5668999999999999888766655555567789999999999999887 79999999999999998776544332
Q ss_pred -CCCC---CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce------eEec------CCCCcEEEEEEcCCCCEEEE
Q 001159 495 -GHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 495 -~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~ 558 (1135)
.+.. ...+++.+|... ..+++++.|.-+++||.+..... ..+. .....|++++|+.++.-|++
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa 353 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA 353 (559)
T ss_pred ccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence 2333 567888888754 68999999999999998754332 1111 22337999999977666655
Q ss_pred EecCCCCCCeEEEEECCC--C----------eEE-EEeecccCC-ceeEEE-ecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 559 CGTSKEGESHLVEWNESE--G----------AIK-RTYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~--~----------~~~-~~~~~~~~~-~v~~i~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
... +-.|+++.... | ..+ +.++||... .|..+- |.|..+++++|+.-|.|.||+-.+++.+
T Consensus 354 SYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 354 SYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred eec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 543 55688885432 3 223 348888653 366664 5678899999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..+.+..+ .|+|+.-+|.-..||+.+-|..|+||-..+.
T Consensus 430 ~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 430 RFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 99988766 7999999999999999999999999987443
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=7.8e-16 Score=172.66 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=200.6
Q ss_pred CccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
+.+|..... ..+...+.....|+|++|+|....++|.|+++|+|.+||+..+..... .........
T Consensus 224 ~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~s 289 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVS 289 (555)
T ss_pred EEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------ccccccccc
Confidence 344544444 677788888899999999999999999999999999999988765210 001112456
Q ss_pred CCcceEEEEEcCCCCe--EEEEeCCCeEEEEEeCCCCceeeeeEee---------cccCCEEEEEEecCCCeEEEEEEcC
Q 001159 407 AAISVNRCVWGPDGLM--LGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~--las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
|..+|+.+.|-.+..- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|++
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe 368 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTE 368 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcC
Confidence 9999999999875554 9999999999999887543211111111 11236899999987776 7899999
Q ss_pred CCcEEEEE---cCCCe-----eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc-CCCceeEecCCCCcEEE
Q 001159 476 DKMIKVWD---VVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 476 d~~i~iwd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~ 546 (1135)
+|.|.--+ ...+. .+..+..|.++|.++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 99988733 22222 2335567899999999988764 3444444 9999999887 56666677777778999
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCC--eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
++|||....++++. +.+|.|.+||+... .++.+.... ......+.|+++|+.+++|...|.+.+|++..
T Consensus 447 vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999887777665 46999999999743 344444433 32667788999999999999999999999964
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2e-14 Score=144.35 Aligned_cols=242 Identities=11% Similarity=0.108 Sum_probs=188.2
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
...+..+.|+.|...|..|+.|| -++|+........ ........|.-+-|+..=- .|++...-+.+++.+...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSLv--aiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSLV--AIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccccee--EEEecCCCceEEEEEcccC
Confidence 44577888999999999999999 6788776643311 1112233566777765421 3344434456999999888
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC---CCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+..+. ...+|.++.++. +.|+.+-.+. |.|||+++.+.+.++.. +...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 8887775 566799998854 4566655544 99999999888776543 3446777777777789987643 2
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
..|.|.+||..+-+.+..+..|.+ .+.+++|+++|.+|+++++.|+ ||++.+.+|+.+..+.-......|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 378899999999999999999988 9999999999999999999887 79999999999999976555567899999999
Q ss_pred CCEEEEEECCCcEEEEEcCCC
Q 001159 644 GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++|++.++.++|.||.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998755
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=1.9e-14 Score=159.80 Aligned_cols=273 Identities=14% Similarity=0.183 Sum_probs=179.1
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~~ 439 (1135)
++++...++.|.+|++.+...+.. .+ .+ .+.+....++++|++++|++++ .++.|.+|++..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~--~~--------------~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTL--LQ--------------VV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceee--ee--------------EE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 455567789999999964322110 00 01 1335577899999999987764 578899999974
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEE-cCCCcEEEEEcCC-Ce---eeeeecCCCCCeeEEEeeccCCccEE
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVA-GR---KQYTFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~~l 514 (1135)
...+...... ...+....++|+|+++. ++++ ..++.|.+|++.+ +. .+..+. +.....+++++|++ +++
T Consensus 67 ~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g--~~l 140 (330)
T PRK11028 67 DGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN--RTL 140 (330)
T ss_pred CCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC--CEE
Confidence 3223222122 13345678999999994 4444 4588999999864 32 223333 22345667887754 666
Q ss_pred E-EEEcCCeEEEEeCcCCCceeE-----ec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC--Ce--EEEEe
Q 001159 515 F-STAIDGKIKAWLYDYLGSRVD-----YD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GA--IKRTY 583 (1135)
Q Consensus 515 ~-s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~~~ 583 (1135)
+ +...++.|.+||+++.+.... .. ..+.....++|+|+|++++++.. .++.|.+|++.. ++ .+..+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEEE
Confidence 4 555679999999986432211 11 12345678999999999988753 478899999873 33 34444
Q ss_pred ecccC-----CceeEEEecCCCCEEEEEe-CCCeEEEEECCCCc----eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-
Q 001159 584 SGFRK-----RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTS- 652 (1135)
Q Consensus 584 ~~~~~-----~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 652 (1135)
..... .....+.++|++++++++. .++.|.+|+++... .+...... .....+.++|+|++|+++..
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEcc
Confidence 32111 1223588999999999975 47899999986533 22222221 13568999999999998776
Q ss_pred CCcEEEEEcC
Q 001159 653 DNGIKILANS 662 (1135)
Q Consensus 653 dg~i~iwd~~ 662 (1135)
+++|.+|++.
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999875
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=6e-17 Score=177.50 Aligned_cols=288 Identities=14% Similarity=0.211 Sum_probs=224.8
Q ss_pred ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
.+..+.+|...|+|+.|...|.++++++. +..++||...++.++....||.+ .|+.++.+.+.-++++++.|..|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceE
Confidence 34456778889999999999999999974 88899999999999999999998 89999999998899999999999
Q ss_pred EEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcc
Q 001159 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1135)
++|.+..+.++..+.+|.+ .|++++|+|-. +.+.||++++||..-. .. .+...
T Consensus 257 rvWrl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~--~~-~y~pr------------------ 309 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE--PR-IYVPR------------------ 309 (1113)
T ss_pred EEEecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc--cc-ccCCC------------------
Confidence 9999999999999998865 89999999965 6788999999998611 00 00000
Q ss_pred cccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccc
Q 001159 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1135)
Q Consensus 693 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 772 (1135)
|.. .+ ..
T Consensus 310 -----------------p~~---------------------------------------~~-----------------~~ 316 (1113)
T KOG0644|consen 310 -----------------PLK---------------------------------------FT-----------------EK 316 (1113)
T ss_pred -----------------CCC---------------------------------------cc-----------------cc
Confidence 000 00 01
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .++.|..++..+++++.|+.-..|.+.... | + ...+.-+.++.|
T Consensus 317 ~~~-~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~----------------~-~~~lif~t~ssd 363 (1113)
T KOG0644|consen 317 DLV-DSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W----------------R-SNLLIFVTRSSD 363 (1113)
T ss_pred cce-eeeeccccccccccccCCcccccchhhHhh---------------h----------------h-ccceEEEecccc
Confidence 122 667777888888999999888877543211 0 1 222222333333
Q ss_pred CC-EEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-CcCCCeE
Q 001159 853 DS-YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRIT 929 (1135)
Q Consensus 853 g~-~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~i~ 929 (1135)
-. +.+++- +-.+++|++.+|.+.+.+.+|...+..+.++|.+..+..+++.||...|||+-.|.+++... +| +.+.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~ 442 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLV 442 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceee
Confidence 33 444444 67899999999999999999999999999999888888899999999999999998776654 54 5567
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCce
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEK 959 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~ 959 (1135)
.-+||+||+.++....-|.+.|.....++.
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 779999999999988889999998766553
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=4.6e-15 Score=167.18 Aligned_cols=258 Identities=18% Similarity=0.206 Sum_probs=177.6
Q ss_pred EEEEEec--CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTN--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~--dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
+.+.+-. |...+++++.||.|+||+--.... ....-+.-|..-++... + . .+.-.-+.|-....
T Consensus 1113 s~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------~~~eLVTaw~~Ls~~~~-----~--~-r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1113 SDLELINEQDDALLLTASSDGVIRIWKDYADKW------KKPELVTAWSSLSDQLP-----G--A-RGTGLVVDWQQQSG 1178 (1387)
T ss_pred ceeeeecccchhheeeeccCceEEEeccccccc------CCceeEEeeccccccCc-----c--C-CCCCeeeehhhhCC
Confidence 4444433 455688899999999996321110 00001223333333221 1 1 11124456666555
Q ss_pred EEEEEe-CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eeeEEecCcCCC--
Q 001159 855 YVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNR-- 927 (1135)
Q Consensus 855 ~la~~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~-- 927 (1135)
+|.+++ -..|+|||...-.+.+.+.. ....|+++.-+-..|+++|.|..||.|++||.... ..+...+.|++.
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 555555 58899999998777777654 33457777665546899999999999999998743 356778889988
Q ss_pred eEEEEEcCCCC-eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCc
Q 001159 928 ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006 (1135)
Q Consensus 928 i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1006 (1135)
|..+.+-+.|- .|++|+.||.|++||+..........+.. |-......+++..+++...+|+|+.+.|+||++.++
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeeccCCCeeeecCcceEEEEecChh
Confidence 99999998775 49999999999999998753222111111 111112478999999999999987799999999777
Q ss_pred eeeccCCCCC----CCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 1007 CSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1007 ~~~~~~~~~~----h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
.+..+....+ ....+.|++|+|.--.||+|+.|.+|.||....+.
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 7666544322 14577999999999999999999999999987654
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=6e-15 Score=145.07 Aligned_cols=228 Identities=12% Similarity=0.135 Sum_probs=177.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
..+|+|.+|++|+. .+|++.....|.||.......- ...+.+..|...|++|.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46999999999998 6888888899999998876521 122347789999999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee----eeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 501 (1135)
|+.|...++|....+...++...+..|+..++++.|+|.+. .|++||.-+.|.||-.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777778888999999999999999 8999999999999987654321 22345778899
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeC-----cCC-------------CceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DYL-------------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
++.|+|++ -++++|+.|+..|++.. +.. .....+....+++..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999976 79999999999999853 211 112233456779999999999999998874
Q ss_pred CCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCC
Q 001159 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
|..+.+-|..... .+.......- +..++.|-.+
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise 260 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE 260 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecC
Confidence 7788888876554 2333333232 5555555443
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=4.1e-15 Score=143.84 Aligned_cols=254 Identities=13% Similarity=0.235 Sum_probs=182.8
Q ss_pred EEeecCCCCeeEEEEecCCC----eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 340 VRTLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~----~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..++.|.-+++.+-|.|+.. .+|||.+ ..+++|.+...+.... +...+....-..+..+++++.
T Consensus 90 ~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFD 157 (364)
T KOG0290|consen 90 DANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFD 157 (364)
T ss_pred cCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee----------hhhhhccCcccccCCcccccc
Confidence 34467999999999999873 4777664 4999999874221100 001122222445778999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee---ee
Q 001159 416 WGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QY 491 (1135)
Q Consensus 416 ~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~ 491 (1135)
|+. |-++|.+++-|.+..|||++++..-.....|-+|...|..++|...+.+ .||+.|.||.|++||++.-+- +.
T Consensus 158 Wne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 158 WNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred cccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEe
Confidence 998 7789999999999999999997442233467799999999999998777 899999999999999986432 22
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcC-CeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCe
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~ 568 (1135)
.-.....+...++|++... +++++-..| ..|.+.|++.... ...+..|...|..++|.|.. ..|.++|. |.+
T Consensus 237 E~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~q 311 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQ 311 (364)
T ss_pred cCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cce
Confidence 2222256788888887643 678777665 4689999987654 55889999999999999965 46777764 888
Q ss_pred EEEEECCCCe------EEEEeecccCCceeEEEecCC-CCEEEEEeCCCeEEE
Q 001159 569 LVEWNESEGA------IKRTYSGFRKRSLGVVQFDTT-RNRFLAAGDEFQIKF 614 (1135)
Q Consensus 569 i~~wd~~~~~------~~~~~~~~~~~~v~~i~~s~~-~~~l~~~~~dg~i~i 614 (1135)
+.+||+...- ++-.+. .+..|+.+.|++. +..++.+.. +++.+
T Consensus 312 aliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 312 ALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred EEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 9999997532 222233 2237899999964 456666543 34443
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=9.2e-15 Score=164.80 Aligned_cols=291 Identities=13% Similarity=0.183 Sum_probs=206.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGV 425 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las 425 (1135)
.-..+.|+|-.+ .++++.....|+|||.+.++.+.. |+.. ......|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~-----F~n~-----------~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNG-----FDNG-----------AFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceecc-----ccCC-----------CCCCCccceeeeecccchhheee
Confidence 466788999887 566676667999999999887643 1110 11345688888865 5678999
Q ss_pred EeCCCeEEEEEeCCC--Cc---eeeeeEeeccc----CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC-
Q 001159 426 AFSKHIVHLYTYNPT--GE---LRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG- 495 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~--~~---~~~~~~l~~h~----~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 495 (1135)
|+.||.|+||+--.. +. +.....+.++. +.=.-+.|..... +|+++|+-..|+|||......++.+..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999974322 22 22111222221 1113467777666 677777789999999998888776643
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCc--EEEEEEcCCCCE-EEEEecCCCCCCeE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNW--CTMMAYSADGTR-LFSCGTSKEGESHL 569 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~s~~~~~-l~~~~~~~~~~~~i 569 (1135)
....|+++.-+-.. |+.+++|..||.|++||.+.... +.....|... |..+.+-+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 44567777654433 68999999999999999886544 3355667665 999999887765 888875 8889
Q ss_pred EEEECCCCeEEE--Eeeccc--CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCcceEEE
Q 001159 570 VEWNESEGAIKR--TYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRF 640 (1135)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~--~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~ 640 (1135)
++||++...... ++..|. +...+++..++....+++|+. +.|+||++.. +.+..+..+ .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999999742222 222232 324889999999999999988 9999999874 434333322 12346799999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 641 ~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|..-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.6e-16 Score=157.31 Aligned_cols=200 Identities=22% Similarity=0.236 Sum_probs=154.5
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeee
Q 001159 886 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 965 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 965 (1135)
.+++|++ +|..|++|+.||.+|+|+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+..++..+...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999999888888888999999999999999999999999 8999999998533221
Q ss_pred ecCCCCCCCCCCceEEEECCCC---cE-EEE--EecCeEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 966 QAPAGRQSPLVGETKVQFHNDQ---TH-LLV--VHESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 966 ~~~~~~~~~~~~v~~~~~s~dg---~~-l~~--~~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
.+.. .......+.|+.|+ .+ +++ ...+.|+.|++ .+.....+...-.....|++++.|+||+++|.|
T Consensus 224 -t~~~---k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFS---KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCcc---cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1111 11455678888887 33 333 24567888777 221111111111124579999999999999999
Q ss_pred eCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1037 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1037 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
+.||.|.|++..+.+.+.-... .|...++.+.|+| |.+++++.+.|.+..+..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 9999999999998877754432 3345677999999 7789999999999999988663
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=8.4e-15 Score=164.43 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=185.5
Q ss_pred CCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCCCCc--eee-eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 407 h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~~~~--~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
-...|.|+.|+| +..++|.|..+|+|.+||+..+.. ... ......|..+|+.+.|..+-...-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467899999999 667888889999999999988755 111 1123468999999999876442258999999999999
Q ss_pred EcCCCee------eeeec------CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--------eeEecCCCC
Q 001159 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--------RVDYDAPGN 542 (1135)
Q Consensus 483 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~ 542 (1135)
+++.-.. ..... .-...++++.|.+... ..++.|+.+|.|.--+-...+. ...+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234688999988765 7899999999988733222211 225566788
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
.|.++.++|-+..++..+. |.++++|... ...++..+..+.+ .+++++|||... .|+++..||.+.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998876664442 8899999987 6677777777666 699999999875 4566778999999998754
Q ss_pred --ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 621 --NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++.+.... ....+.+.|++.|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 344444433 335677888889999999999999999998644
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=8.1e-15 Score=167.66 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=164.3
Q ss_pred cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCcee
Q 001159 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1135)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~ 444 (1135)
+..|.|||........ +..|...+.+++|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654211 45678889999999999999988654 469999998865321
Q ss_pred eeeEeecccCCEEEEEEecCCCeEEEEEE-cCCCcEEEE--EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEE-EcC
Q 001159 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AID 520 (1135)
Q Consensus 445 ~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-s~d 520 (1135)
...+.+| ...++|+|||+ .|+.+ +.++.+.|| |+.++. ...+..+...+.+..|+|++ ..|+.+ ..+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2233333 44689999999 45544 567766555 655555 45666677778889998865 655544 467
Q ss_pred CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 521 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|...+|+++..........+.. .+..|+|||++|+..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222223332 45789999999988753 24777999988765433222 23457899999
Q ss_pred CEEEEEeCCCeEEEEEC--CCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
++|++++.++.+.+|++ .+++....+..+.. .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998998888875 35777777765543 5788899884
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=5.9e-14 Score=141.10 Aligned_cols=240 Identities=14% Similarity=0.205 Sum_probs=184.0
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~~ 918 (1135)
...+..+.|..|...|..|+....++|+................|--+-|+. .++|..+.+. .+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4556677799999999999966678888876554322333344577778876 4677666553 5999999988888
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-E--ec
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 995 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~d 995 (1135)
..+. ...+|.+|.++ .++|+.+=.+. |.|+|+++-+.+.+.....++ ..++.++.+++.+.|+|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-----~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-----PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCC-----ccceEeeccCCCCceEEecCCCCC
Confidence 7776 34679999985 45677666555 999999997755442222111 145677777778889998 3 57
Q ss_pred CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCe-EEEEECCCceeeeeeCCceeccccccCCCCcc
Q 001159 996 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1073 (1135)
Q Consensus 996 ~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1135)
|.|.|||. +.+.+..+. +|.+++-+++|++||.+|||+|+.|+ ||||.+.+|+.+.+++.... ....
T Consensus 153 GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~I 221 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSI 221 (391)
T ss_pred ceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEE
Confidence 89999999 777766654 67999999999999999999999998 79999999999999986643 2556
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.+++|+| ++.+|++.+..++|++|.++...
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 6899999 78999999999999999998765
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-15 Score=155.68 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=158.4
Q ss_pred EEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 845 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
.+++|+++|..+++|+ ||++|||+..+...+.....|..+|.++.||| ||++||+.+.| ..+||+++++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 899999999977776653
Q ss_pred c--CCCeEEEEEcCCC-----CeEEEEcCCCcEEEEeCCCCceeceeeeec-CCCCCCCCCCceEEEECCCCcEEEE-Ee
Q 001159 924 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGRQSPLVGETKVQFHNDQTHLLV-VH 994 (1135)
Q Consensus 924 h--~~~i~~l~~s~d~-----~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~~-~~ 994 (1135)
. ......+.|+.|+ ..++....-+.|+.|++..+..-....... ...+ ..+++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 2 2346778898887 334444556778888887765421111111 1111 46899999999999999 57
Q ss_pred cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 995 ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 995 d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+|.|-|++. +.+++... .+.|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999 66665544 356799999999999999999999999998888764
No 209
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=5.7e-13 Score=146.55 Aligned_cols=332 Identities=14% Similarity=0.141 Sum_probs=208.1
Q ss_pred EEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 468 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
+++++-..++.|.+.|..+.+.+.++.........+.++|+ |.++++++.||.|.++|+.+.+....+.... ...++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceE
Confidence 35677788999999999999999999865554455667664 4899999999999999999999877776544 56789
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc------CCceeEEEecCCCCEEEEE-eCCCeEEEEECCCC
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNM 620 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~~ 620 (1135)
++|+||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..++.+..++.. -+.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999997764 37789999999999998876542 2246677788888855554 45588888898776
Q ss_pred ceEEEEeCCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
+.+..-..... .......|+|++++++++ ..++.|-++|..++. ....+....
T Consensus 161 ~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k-~v~~i~~g~------------------------ 214 (369)
T PF02239_consen 161 KNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK-LVALIDTGK------------------------ 214 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE-EEEEEE-SS------------------------
T ss_pred cccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccce-EEEEeeccc------------------------
Confidence 54432221111 246789999999987665 446788899987662 111110000
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
..|.... ..+
T Consensus 215 ---------------------------------------------------------------------~p~~~~~-~~~ 224 (369)
T PF02239_consen 215 ---------------------------------------------------------------------KPHPGPG-ANF 224 (369)
T ss_dssp ---------------------------------------------------------------------SBEETTE-EEE
T ss_pred ---------------------------------------------------------------------ccccccc-ccc
Confidence 0011111 110
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE-EE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV-MS 858 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l-a~ 858 (1135)
.+|. .+.++. .+..+... ..
T Consensus 225 -php~--------------------------------------------------------~g~vw~--~~~~~~~~~~~ 245 (369)
T PF02239_consen 225 -PHPG--------------------------------------------------------FGPVWA--TSGLGYFAIPL 245 (369)
T ss_dssp -EETT--------------------------------------------------------TEEEEE--EEBSSSSEEEE
T ss_pred -cCCC--------------------------------------------------------cceEEe--eccccceeccc
Confidence 1111 111111 11222332 22
Q ss_pred EeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEEcccceeeEEecCcC-CCeEEEEE
Q 001159 859 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAF 933 (1135)
Q Consensus 859 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~i~~l~~ 933 (1135)
.+.+.+.+||..+++.++++...... ..+..+| ++++|.+. ...++|.++|..+.+.+..+.... ..+..+.|
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE
T ss_pred ccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEE
Confidence 23456678999999999999987766 8888899 88999887 455899999999998877775322 35899999
Q ss_pred cCCCCeEEEEcC--CCcEEEEeCCCCceece
Q 001159 934 SPTLNALVSSGA--DAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 934 s~d~~~l~s~~~--D~~i~iwd~~~~~~~~~ 962 (1135)
++||+.+..+.. ++.|.++|..+.+....
T Consensus 324 ~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp -TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 999986655443 33699999999886543
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=5.8e-14 Score=161.26 Aligned_cols=255 Identities=13% Similarity=0.094 Sum_probs=183.1
Q ss_pred ccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEeCCC----CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~-~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
+..|...|..++.++.. .++++||.||+|++||...- ...+...++..-...+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 56788888898888755 99999999999999998642 22333334444567899999999999 7899999999
Q ss_pred EEEEEcCCC--e-----eeeeecCC-CCCeeEE-EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--ecCCCCcEEEE
Q 001159 479 IKVWDVVAG--R-----KQYTFEGH-EAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (1135)
Q Consensus 479 i~iwd~~~~--~-----~~~~~~~h-~~~v~~i-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~ 547 (1135)
|++.++... + +.+....+ .+.+.++ ++........++.+..-+.|..||++....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 1 12222222 3344444 333322223788888999999999988766554 34456789999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC---CCEEEEEe--CCCeEEEEECCCCce
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAG--DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~--~dg~i~iwd~~~~~~ 622 (1135)
+.+|-+.+++.|.. .|.+.+||++-+.++.........++..++.+|- ....++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999975 8889999999999988877655557777766653 34555544 578899999999876
Q ss_pred EEEEeCCCCC-----------------CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..++...... .......+...+..+.+|+.|..|+.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6665432110 01122333344568899999999999998766
No 211
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.64 E-value=5.3e-12 Score=144.01 Aligned_cols=197 Identities=15% Similarity=0.184 Sum_probs=152.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC---cceEEEEEcCCCCeE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA---ISVNRCVWGPDGLML 423 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~spd~~~l 423 (1135)
+.|....+.-..+ .++.++.+..+.|||...+...... ..+.. ....-+.++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i------------------~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI------------------QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc------------------CCCceEEEEeEEEEeccCcEEEE
Confidence 3455556666665 5677888999999999876544320 00111 122234467778899
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-eecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~ 502 (1135)
++|+.-+.|.+|+........ .+.+|.+.|.++.|+.||. ++++.|+|.++++|++.+++... +.-+|.+.|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999998433221 4789999999999999999 89999999999999999988776 66689999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
++|+|. .+++++.|-+.++|+.+..... .+..| ...|..++..++...+++++. |+.+++||+..
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 999874 8999999999999976544333 55555 447899999998888888875 88999999864
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=5.4e-13 Score=146.71 Aligned_cols=271 Identities=9% Similarity=0.103 Sum_probs=166.8
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
+++.|.+.|..+.+.+..+..... .-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~DG 89 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSPDG 89 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE--TT
T ss_pred CCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcCCC
Confidence 378999999999999999987554 34457899999999999999999999999999999997643 35889999999
Q ss_pred CEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 645 SLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 645 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
++++++. .++.+.++|..+. +.++.+.......
T Consensus 90 ~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~--------------------------------------------- 123 (369)
T PF02239_consen 90 KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV--------------------------------------------- 123 (369)
T ss_dssp TEEEEEEEETTEEEEEETTT---EEEEEE--EE-T---------------------------------------------
T ss_pred CEEEEEecCCCceeEeccccc-cceeecccccccc---------------------------------------------
Confidence 9998775 5899999999887 4444433211100
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEe-cccceeeeEEe
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLAL-ASNAVHKLWKW 802 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~-~~dg~i~iw~~ 802 (1135)
.....++ ..+..++....+++. -..+.|-+-|.
T Consensus 124 ---------------------------------------------~~~~~Rv-~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 124 ---------------------------------------------DGPESRV-AAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp ---------------------------------------------TTS---E-EEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred ---------------------------------------------cccCCCc-eeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 0012233 666677777744444 33455544443
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS 880 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~ 880 (1135)
... ..+....+.. ........|+|++++++++. .+.|.++|.++++.+..+..
T Consensus 158 ~d~---------------------~~~~~~~i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 158 SDP---------------------KNLKVTTIKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp TTS---------------------SCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ccc---------------------cccceeeecc----cccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 211 0011111111 45566789999999988876 68999999999988776642
Q ss_pred ----CCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEE----
Q 001159 881 ----PPPAATFLAFHPQ---------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS---- 943 (1135)
Q Consensus 881 ----h~~~v~~l~~sp~---------~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~---- 943 (1135)
|..+...+ .+|. .+...++.-....+.+||..+.+.++++....++ .-+..+|+++++...
T Consensus 213 g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 213 GKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-
T ss_pred cccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCC
Confidence 33333332 2221 1222222222335667888899999999877666 788889999999887
Q ss_pred cCCCcEEEEeCCCCc
Q 001159 944 GADAQLCMWSIDKWE 958 (1135)
Q Consensus 944 ~~D~~i~iwd~~~~~ 958 (1135)
...++|.++|.++.+
T Consensus 291 ~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 291 PDADTVQVIDKKTLK 305 (369)
T ss_dssp SSHT-EEEEECCGTE
T ss_pred CCCceEEEEECcCcc
Confidence 344778888888754
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.9e-14 Score=148.97 Aligned_cols=286 Identities=11% Similarity=0.135 Sum_probs=215.3
Q ss_pred eeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCC--CcceEEEE
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA--AISVNRCV 415 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~ 415 (1135)
++++.|.+...-+.+..||||++++|+|.+.-.|++||+..-.... .-| ...|.-.-
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~fei 101 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEI 101 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEE
Confidence 4566777888999999999999999999999999999998654332 222 34466666
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
.|-|-..++.-..|.+|.+...-. ... .+. -...-.+++++.-... |+.++....|+-++++.|+-+..|..
T Consensus 102 LsDD~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eccchhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccc
Confidence 777777777777888887654332 111 111 1223455666655543 44455566799999999999999988
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC------CCC-----cEEEEEEcCCCCEEEEEecCCC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~-----~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+.++++..++.. .+|++|+.+|.|..||.++......+.. +.+ .|+++.|+.+|-.+++|..
T Consensus 174 ~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts--- 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS--- 248 (703)
T ss_pred ccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---
Confidence 88999999998876 7899999999999999988766554332 222 5999999999999999875
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCC--CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
.|.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.... .++.+++-|
T Consensus 249 -~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p 323 (703)
T KOG2321|consen 249 -TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS---DLNDFCFVP 323 (703)
T ss_pred -CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC---CcCceeeec
Confidence 8899999999988876554444447888999765 3455554 55789999999999988886543 589999999
Q ss_pred CCCEEEEEECCCcEEEEEcC
Q 001159 643 EGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++-+++++-.++.+..|=+.
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCceEEEecCCCcceeEEcc
Confidence 99999999988887777554
No 214
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=9.5e-16 Score=168.72 Aligned_cols=301 Identities=18% Similarity=0.234 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 001159 168 SSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPS 247 (1135)
Q Consensus 168 ~~rL~~ll~q~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~~~~~~~ 247 (1135)
+-.|.+|+.|+++.|+.+|..|.++++.+|||.+|+|+.++.-...|.++..++ -..+ -..|+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl----~~re-------l~~~y------ 1074 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRL----GTRE-------LQSFY------ 1074 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcc----cchh-------hcCcc------
Confidence 335999999999999999999999999999999999999543333333333222 0000 00000
Q ss_pred CccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCccccCCcchhHHHhhcccCCcceeeecCCCCCC
Q 001159 248 PGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTP 327 (1135)
Q Consensus 248 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~ 327 (1135)
+| +.-.-.+...+..+.+
T Consensus 1075 ----~g------------------------------------------V~g~~~dr~~IFSRFr---------------- 1092 (1516)
T KOG1832|consen 1075 ----SG------------------------------------------VHGNRRDRQFIFSRFR---------------- 1092 (1516)
T ss_pred ----cc------------------------------------------cccCcccchhhHhhcc----------------
Confidence 00 0000011111222221
Q ss_pred ccccCCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
..+++. |....+|++||-+.+ .|++|+..|.|+++++.+|..... ..+
T Consensus 1093 -----------~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~nc 1141 (1516)
T KOG1832|consen 1093 -----------SWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNC 1141 (1516)
T ss_pred -----------cchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccc
Confidence 233444 677899999999998 688999999999999999987765 567
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
|...|+.+.-|.||..+++.+.-. -..+|++.+-. ...+.+. .-.++.|+...+. . +.|..-..+.+||+
T Consensus 1142 H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~-r-~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1142 HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF-R-ALGTEADDALLYDV 1213 (1516)
T ss_pred cccccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH-H-HhcccccceEEEec
Confidence 999999999999999887765433 47899987632 2222332 3567889876553 2 33333457899999
Q ss_pred CCCeeeeee-cC---CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 485 VAGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 485 ~~~~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
+++..+.++ .+ .+..-++..|+|.. .+++ .|| .+||++..+.+..+..-... -.-.|+|.|..++..+
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS 1285 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec
Confidence 999887763 22 22334677788875 4444 234 47999988776655443321 1235899999998865
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
.|||++|.+.++....-.. ..+.|+..|+.++..
T Consensus 1286 ---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1286 ---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhh
Confidence 3899999998887776554 457788888877654
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=150.44 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=198.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
|.+|.+.|+.|.|+..|..|++|+.|..|.+||...++.... -..||...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998765442 234899889888898865444799999999999877
Q ss_pred cCC-Cee--eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec---CCCC---cEEEEEEcCCCC
Q 001159 484 VVA-GRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGN---WCTMMAYSADGT 554 (1135)
Q Consensus 484 ~~~-~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~s~~~~ 554 (1135)
+.. +.+ ...+..|.++|..++..|... ..|.+++.|+.+.-+|++.......+. .+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 653 333 245667999999999888755 789999999999999998766543322 2222 567888999776
Q ss_pred -EEEEEecCCCCCCeEEEEECCCCe------EEEEeecc-----cCCceeEEEecCCCCEEEEEeCCCeEEEEECCC--C
Q 001159 555 -RLFSCGTSKEGESHLVEWNESEGA------IKRTYSGF-----RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--M 620 (1135)
Q Consensus 555 -~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~-----~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~ 620 (1135)
.+++++. +..+++||.+.-. .+..+..+ ....|++++|+.++.-+++...|-.|+++.... |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5666664 6778999986422 12222222 222589999998888888888888999995443 2
Q ss_pred ----------ceEEE-EeCCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCCCchhhhhccc
Q 001159 621 ----------NMLTT-VDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 621 ----------~~~~~-~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
..+.. +++|.....|..+-| .|...++++|++-|.|.||+-.++ ++++.+++
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~Meg 434 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEG 434 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhc
Confidence 12233 677877777888876 578899999999999999999888 77776655
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.2e-13 Score=134.18 Aligned_cols=284 Identities=15% Similarity=0.189 Sum_probs=188.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~la 424 (1135)
+..+..++|++--- -+|++..|-.|+|||-....... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34688899999553 46788899999999976522110 11224567999999994 56788
Q ss_pred EEeCCCeEEEEEeCCCCcee-----------eeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCeeeee
Q 001159 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~-----------~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~ 492 (1135)
+|+..| |.||......... +...-.+| .+|++|+|.+||. .+++++ .|..|.|||+.++.++.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 887776 9999875321111 11122345 5899999999999 677776 467999999999987765
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
....-+.+.-+.|+|++ ++++++.-|+..++|.....-.........+.|...+|+|+|++|+.... +. -.+|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEE
Confidence 54566788999999966 89999999999999955433333333344458999999999998875542 12 2233
Q ss_pred ECC----CCe-----------EEEEe------ec--ccCCceeEEEecCCCCEEEEEeCC--------CeEEEEECCCCc
Q 001159 573 NES----EGA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 621 (1135)
Q Consensus 573 d~~----~~~-----------~~~~~------~~--~~~~~v~~i~~s~~~~~l~~~~~d--------g~i~iwd~~~~~ 621 (1135)
.+. .+. ++..+ .+ .-.+...+++|+|.|.++++.-.. +.|.+||....-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 221 100 11111 11 012367889999999999986432 346778877654
Q ss_pred eEEEEe--CCCCCCCcceEEEcC---CCCEEEEEECCCcEEEEEc
Q 001159 622 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ~~~~~~--~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~ 661 (1135)
.+.... ...+. ....+.|+| ++.+|.++-+.|.+.-|++
T Consensus 387 ~vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 387 PVELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ceEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 444331 11111 245677776 6778888888888887765
No 217
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.60 E-value=7.8e-11 Score=122.11 Aligned_cols=522 Identities=15% Similarity=0.153 Sum_probs=280.8
Q ss_pred ccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEE------EeccceEEEEEcCCccccccCCceeecccccccchhhhh
Q 001159 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 330 ~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
|..+...++..+...+-+-|+...|+|+|+.++++ +...+.+.+.+.+.|+..+- ++
T Consensus 62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-Ty---------------- 124 (668)
T COG4946 62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TY---------------- 124 (668)
T ss_pred HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EE----------------
Confidence 44444566777777788899999999999976552 12334677888788875432 11
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCe----EEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeEEEEEE-----
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC----- 473 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~----i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~----- 473 (1135)
+ | ...-.-..|+|||+.|++...-.- -.+|.+..... .. .| .-++.+.+.+- ||. ++.|
T Consensus 125 f-G-r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~~-dg~---ivigRntyd 193 (668)
T COG4946 125 F-G-RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVIK-DGI---IVIGRNTYD 193 (668)
T ss_pred e-c-cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEEe-CCE---EEEccCccc
Confidence 1 2 112233559999999988754321 23344332211 11 11 22345555553 442 3322
Q ss_pred ---------cCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC-
Q 001159 474 ---------GDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN- 542 (1135)
Q Consensus 474 ---------~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~- 542 (1135)
+.-| ++|--.. |+....+-.-.+.|++-.+... ...+....||.=.+|.++-.+.-. ..|..
T Consensus 194 LP~WK~YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~~---RvYFlsD~eG~GnlYSvdldGkDl--rrHTnF 266 (668)
T COG4946 194 LPHWKGYKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVGE---RVYFLSDHEGVGNLYSVDLDGKDL--RRHTNF 266 (668)
T ss_pred CcccccccCCccc--eEEEEecCCcceeeeeecCCCcCCceEEcc---eEEEEecccCccceEEeccCCchh--hhcCCc
Confidence 2222 3454332 2222333223333433322211 233333445555555443222211 11221
Q ss_pred -cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec---c---cCC-cee---EE-EecC-CCCEEEEEeCC
Q 001159 543 -WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLG---VV-QFDT-TRNRFLAAGDE 609 (1135)
Q Consensus 543 -~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~---~i-~~s~-~~~~l~~~~~d 609 (1135)
.-.+-..+.||+.++... .|.|+++|..+..+.+.--+ . ... .+. -+ .|++ +|.+++..|.
T Consensus 267 tdYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR- 340 (668)
T COG4946 267 TDYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR- 340 (668)
T ss_pred hhccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-
Confidence 233344578999988653 55699999987654332111 1 000 010 01 1222 5778887765
Q ss_pred CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC-cEEEEEcCCCchhhhhccccccccccCCCCCCCC
Q 001159 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
|...+.+...+-.++.-. ...|.-..+.-+++-++.|..|| .+-|+|..++. . +.+..
T Consensus 341 GkaFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~-kr~e~--------------- 399 (668)
T COG4946 341 GKAFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-V-KRIEK--------------- 399 (668)
T ss_pred CcEEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce-E-EEeeC---------------
Confidence 667777666554443321 22477777777888899999998 89999988772 1 11110
Q ss_pred CCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCC
Q 001159 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 768 (1135)
T Consensus 400 -------------------------------------------------------------------------------- 399 (668)
T COG4946 400 -------------------------------------------------------------------------------- 399 (668)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEE
Q 001159 769 SIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~ 848 (1135)
.-+.| .++..++||+.++++.....+-+.|+ .+|.....+-.. .+-|+..+
T Consensus 400 --~lg~I-~av~vs~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS~----~~lItdf~ 450 (668)
T COG4946 400 --DLGNI-EAVKVSPDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKSE----YGLITDFD 450 (668)
T ss_pred --Cccce-EEEEEcCCCcEEEEEcCceEEEEEEe----------------------cCCCeeEecccc----cceeEEEE
Confidence 12334 88999999998888877666665544 444443333333 77899999
Q ss_pred eecCCCEEEEEe-C----CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC-------CCcEEEEEcc--c
Q 001159 849 LSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-------DSSVQIYNVR--V 914 (1135)
Q Consensus 849 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-------dg~v~iwd~~--~ 914 (1135)
|+|+++++|.+- + ..|+++|+.+++....-. ....-.+-+|.| ++++|..-+. |..+.=+... +
T Consensus 451 ~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs 528 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVS 528 (668)
T ss_pred EcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeec
Confidence 999999999996 4 459999999887755432 444456778999 8888876542 2222222211 1
Q ss_pred ceeeEEec-CcCCCeEEEEEcCCCCeEE-EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLK-GHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~-~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
.-.+..|. +. .||-.+..= .-+.++.+-+=+++... ..+....+ .-..++=-.+|+.+..
T Consensus 529 kPylv~L~~g~--------~sP~~q~p~~~~~ea~e~dle~ie~r~----eP~pVee~------dY~sI~~lk~~killf 590 (668)
T COG4946 529 KPYLVVLGRGY--------YSPFNQPPDEANSEAGEVDLEGIEDRV----EPFPVEEG------DYRSIAGLKNGKILLF 590 (668)
T ss_pred cceEEEecCCC--------CChhhcCchhcCccccceehhhhcccc----cccccCcc------ceeEeeecCCCeEEEE
Confidence 11111111 11 112111111 11222332222222211 01111111 0011111112211111
Q ss_pred -------------E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 993 -------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 993 -------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+ ..|.+.+||++.+.+..+ ...++++..|+|++.+.. -.||.+++++++.
T Consensus 591 s~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 591 SYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EeeccchhhhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 246788999966665554 456899999999999888 6899999999986
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.4e-12 Score=138.08 Aligned_cols=537 Identities=12% Similarity=0.116 Sum_probs=327.3
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.....|+.|+.... ++|+|+.||.++|-.+.+...-.. .-.+...+.-.....+.||.+.|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 44788999999887 799999999999999876533211 0011122222334458999999999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-eeecCCCCCeeEEE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 504 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~ 504 (1135)
...+|.|.+|-+-.+.-.... .-...++.|.+++|+.||+ .|+....||.|.+=.+...+.- +.+++ .....+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 999999999999887644321 1123456799999999999 7888888999887765443321 12222 1233566
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCC-------ceeE----ecCCCCcEEEEEE--------cCCCCEEEEEecCCCC
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRVD----YDAPGNWCTMMAY--------SADGTRLFSCGTSKEG 565 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~----~~~~~~~i~~~~~--------s~~~~~l~~~~~~~~~ 565 (1135)
|+++. ..++.+-.+|.+++||.+..- +... +......|..+.| -||...++++..
T Consensus 164 ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 77755 677778888999999875421 1111 1112223445554 257778888864
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC---------CeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
+|.+.+..-.+......+.... .+..+.|+++|..++.+|.+ +.|.+|.. -|+.+.+++..+. .|+
T Consensus 238 nGr~QiMR~eND~~Pvv~dtgm--~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It 312 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTGM--KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CIT 312 (1189)
T ss_pred CceehhhhhcCCCCCeEEeccc--EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eee
Confidence 6666665433322222222222 56778999999999998743 25666654 3777888877655 689
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 716 (1135)
++.|-..|-.++.+ .|+.|.+=+++... ....++....
T Consensus 313 ~lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~e~TvV---------------------------------------- 350 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYIEETVV---------------------------------------- 350 (1189)
T ss_pred eeEEcCCceEEEEE-ecceEEEEeecccc-eEEEeeeEEE----------------------------------------
Confidence 99998888777765 45678776665431 1111110000
Q ss_pred CCCccccccccCCCCcccccccccccc---cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc
Q 001159 717 PPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS 793 (1135)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~ 793 (1135)
++-... ...|.+||..+.....+ . .... .++++..+--.|+.-..
T Consensus 351 ---------------------y~y~~~e~p~y~i~Fwdtk~nek~vK--~--------V~~~-~~~a~~~ehCvL~~~~d 398 (1189)
T KOG2041|consen 351 ---------------------YVYQKEELPQYGIMFWDTKTNEKTVK--T--------VTHF-ENMAFYREHCVLINRQD 398 (1189)
T ss_pred ---------------------EEEccCCCcceEEEEEecccChhhhh--h--------hcce-eehheecccEEEEeccc
Confidence 000000 13466777664322111 1 0111 56666666665666666
Q ss_pred cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCcc
Q 001159 794 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 873 (1135)
Q Consensus 794 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~ 873 (1135)
+|.+.-++--.. + + ......+-+. -|+.+... -..|.-.-..-++.+++.++...+.+|.....+
T Consensus 399 ~~~i~e~s~le~-~---~---~~~~l~LCNS-IGT~lD~k-------ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 399 DGVIPEYSTLEN-R---S---RVYFLQLCNS-IGTSLDYK-------YTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred cCCCcchhhhhc-c---c---ceEEEeeecc-cCCcCCCC-------cceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 666654421100 0 0 0000011110 01111000 111222222337778888887788888653211
Q ss_pred E--------------------------------EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 874 V--------------------------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 874 ~--------------------------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
. .+++.|..++|.+++.+. ++|.++-..|.|+-|.+.+.-.....
T Consensus 464 ~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y 540 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSY 540 (1189)
T ss_pred hhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeecc
Confidence 0 133455667888888864 68999999999999999987766655
Q ss_pred cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC---CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCe
Q 001159 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 997 (1135)
Q Consensus 922 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~ 997 (1135)
. -...|..++.+-+..++|....-|.+.+.|+.- +..+.. +..... ..|..+.|..|+..+.+ -....
T Consensus 541 ~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtr 612 (1189)
T KOG2041|consen 541 P-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTR 612 (1189)
T ss_pred c-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhce
Confidence 4 345689999998889999988889999998872 222211 111111 46788888888876666 34455
Q ss_pred EEEEec
Q 001159 998 ISVYDS 1003 (1135)
Q Consensus 998 v~vwd~ 1003 (1135)
+.|++-
T Consensus 613 myifrg 618 (1189)
T KOG2041|consen 613 MYIFRG 618 (1189)
T ss_pred EEEecC
Confidence 666664
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-13 Score=157.09 Aligned_cols=270 Identities=14% Similarity=0.195 Sum_probs=186.2
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
..+.++..+. |...|..++.++....++++|+.||+|++|+...-..-. ..++ ....+.-....+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4567788887 999999999988774489999999999999986432110 0111 00012225678999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCC--Ccee--eeeEeecc-cCC-EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GELR--QHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~--~~~~--~~~~l~~h-~~~-v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+...+.+..+|+++.||.|++.+++-. +... +......+ .+. |..-+|....+...++.+...+.|..||++..
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762 1111 11111222 223 44445555444336888888999999999887
Q ss_pred eeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-CCcEEEEEEcC---CCCEEEEEec
Q 001159 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~---~~~~l~~~~~ 561 (1135)
....+++ ...+.|++++.+|.. .++++|+..|.+.+||++-...+.....+ ..++..+...| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 7665554 346789999998866 79999999999999999987777655432 34666665554 3456666654
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCC------------------ceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
.+.+.|.+|++.+|....++-...+. ......+...+..+++|+.|..|+.||....
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 25778999999998766665443110 1112333344568899999999999998653
No 220
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.59 E-value=8.6e-11 Score=121.82 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=102.7
Q ss_pred EEEEEecCCcceeEecccc-eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.-..+.-++..++.+..|| .+-+|+. .+++.... .. . -+.|.++..++||++
T Consensus 363 rY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~-e~---~-lg~I~av~vs~dGK~ 415 (668)
T COG4946 363 RYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRI-EK---D-LGNIEAVKVSPDGKK 415 (668)
T ss_pred EEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEe-eC---C-ccceEEEEEcCCCcE
Confidence 4444555555678888887 6777754 33332221 11 2 678999999999999
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEcccceeeEEecCcCCCeEE
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.+++....-. ..+.=.+
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Dfs 493 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFS 493 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccC
Confidence 99998 58899999999987665555667899999999 999999987665 68999999888654433 3333456
Q ss_pred EEEcCCCCeEEEEc
Q 001159 931 LAFSPTLNALVSSG 944 (1135)
Q Consensus 931 l~~s~d~~~l~s~~ 944 (1135)
-+|.||+++|.--+
T Consensus 494 PaFD~d~ryLYfLs 507 (668)
T COG4946 494 PAFDPDGRYLYFLS 507 (668)
T ss_pred cccCCCCcEEEEEe
Confidence 78999999877654
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.1e-14 Score=160.45 Aligned_cols=234 Identities=13% Similarity=0.110 Sum_probs=151.8
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec--cceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++.+|...........+...|.+++|||||++++.++.. +..|.+||+.+++..... .+.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~ 247 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFR 247 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCC
Confidence 3444444333333334477889999999999965444332 247999999887532110 022
Q ss_pred CCCcceEEEEEcCCCCeEEEEe-CCCeEEEE--EeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~-~dg~i~iw--d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+| ..+++|||||+.|++++ .+|.+.|| |+.++. .. .+..+...+.+.+|+|||+. ++++...++...||
T Consensus 248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVY 319 (429)
T ss_pred Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEE
Confidence 33 34689999999998875 57766555 555543 22 45567777889999999994 33345567888888
Q ss_pred EcCCC-eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 483 DVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 483 d~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
++... .....+ .+.. ....|+|++ +.|+.++.++ +.+||+.++........ .....+.|+|||++|++++.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc
Confidence 87532 222333 3443 456777754 7888777765 45599987765432222 23356789999999998875
Q ss_pred CCCCCCeEEEEEC--CCCeEEEEeecccCCceeEEEecCC
Q 001159 562 SKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 562 ~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
++.+.+|.+ .+|..++.+..+.+ .+...+|+|-
T Consensus 392 ----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 392 ----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 344455543 35778888887765 6788889874
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.2e-13 Score=134.17 Aligned_cols=284 Identities=13% Similarity=0.137 Sum_probs=188.0
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ ..++|++---.++++..|-.|++|+-.. .....+.. . - ...|+|++|-|.
T Consensus 99 ~dl-r~~aWhqH~~~fava~nddvVriy~kss--------------------t~pt~Lks--~---s-QrnvtclawRPl 151 (445)
T KOG2139|consen 99 IDL-RGVAWHQHIIAFAVATNDDVVRIYDKSS--------------------TCPTKLKS--V---S-QRNVTCLAWRPL 151 (445)
T ss_pred cce-eeEeechhhhhhhhhccCcEEEEeccCC--------------------CCCceecc--h---h-hcceeEEEeccC
Confidence 344 7888998766788888999999996321 00111111 1 1 678999999995
Q ss_pred -CCEEEEEeCCeEEEEECCCc----cE--------EEEE--eCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcccce
Q 001159 853 -DSYVMSASGGKVSLFNMMTF----KV--------MTMF--MSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDE 916 (1135)
Q Consensus 853 -g~~la~~~dg~i~vwd~~~~----~~--------~~~~--~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~ 916 (1135)
++-+++|..+.|.+|..... .. ...+ .+| ..|++|+|.+ ||..+++++. |..|.|||.+++.
T Consensus 152 saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred CcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCC
Confidence 45777777889999987532 11 1112 234 5799999999 7888888874 6789999999988
Q ss_pred eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeC-CCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec
Q 001159 917 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI-DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 995 (1135)
Q Consensus 917 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 995 (1135)
.+.-...-.+.++-+.|||||.+|+.+.-|+..++|.. +++....... .. ..|...+|+|+|++|..+..
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l---gs------grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL---GS------GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec---cC------CceeeeeecCCCCEEEEEEc
Confidence 76554344567899999999999999999999999944 3433222211 11 36889999999999998776
Q ss_pred CeEEEEec--CCceeecc--------------------CCCCCCCCCEEEEEEeeCCCEEEEEeCCC--------eEEEE
Q 001159 996 SQISVYDS--KLECSRSW--------------------SPKDALPAPISSAIYSCDGLLVYAGFCDG--------AIGVF 1045 (1135)
Q Consensus 996 ~~v~vwd~--~~~~~~~~--------------------~~~~~h~~~i~~~~~s~d~~~l~~~~~dg--------~I~vw 1045 (1135)
+.-++|.+ .++..... ....--.+++.+++|.|.|.+||+.-..+ .|..|
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f 380 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF 380 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence 77777776 22221111 00011146788999999999999865433 36777
Q ss_pred ECCCceeeeeeCCceeccccccCCCCccEEEEecC--CCCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP--SEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
|....-.+.-.-. +. ...-++-.++|+| .++.+|..+=..|.+.-+.+.
T Consensus 381 dtr~sp~vels~c------g~-i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 381 DTRKSPPVELSYC------GM-IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccccCceEEEec------cc-ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 7765433221110 00 0112233444544 566788888888888877764
No 223
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=1.2e-11 Score=141.27 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=189.8
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC--cceEEEEEcCCCCeEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~spd~~~la 424 (1135)
++++++++-. +++|| ++.-.|.+||+..+..+.. + .....+..|. +.+.. .+-+++
T Consensus 8 ~~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~--~-----------~~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRH--L-----------IQSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee--cCCCceEEeeCCchhHhhh--h-----------hhhccccccccccccee-----ccceEE
Confidence 3555566555 45554 3355899999998876542 1 1111233340 00100 123444
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe-e-E
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV-Y-S 502 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~-~ 502 (1135)
++..-+.+..=+..-. .+..-...|....+..+.+ .++.+..+..+-+||...+.....+....... . +
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 4433333332222111 1112233455556666677 67777778899999988887776665332211 1 1
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE-
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 581 (1135)
+.+--..+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11222223378999999999999998855555578999999999999999999999985 8899999999988776
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+.-+|.. .+..++|.|+ .+++++.|.+.++|+.+ ++.+..+..|... .+..++..++...+++++.|+.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~-~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGK-GIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhc-ceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5667777 7888999987 99999999999999765 4555577766543 6899999999999999999999999997
Q ss_pred CCC
Q 001159 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 543
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=7.7e-13 Score=130.53 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=172.1
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC--CEEEEEEecCCCeEEEEEEcC-----CCcEEEE
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG--GVNDIAFAHPNKQLCIVTCGD-----DKMIKVW 482 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~--~v~~v~~s~d~~~~~l~s~~~-----d~~i~iw 482 (1135)
...+++|+.|...+++|..+| .+||+.+.-+... ..+.+.+ .+..|-| ..+.+.|+-|+. ...|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999998888 8999987633221 1111222 2333333 233223333332 2589999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc-CCCceeEecCC--CCcEEEEEEcCCCCEEEEE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAP--GNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~ 559 (1135)
|=...+++.++. ...+|.++.+.++ .|+. -..+.|.+|.+. +.+....+... .....+++-+.+...|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 966778888775 6789999998663 3443 357899999887 44444444332 2234444444444455544
Q ss_pred ecCCCCCCeEEEEECCCCeE--EEEeecccCCceeEEEecCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCcc
Q 001159 560 GTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
| -+.|+|.+-|+...+. ...+..|.. .|.|++++-+|..++++|..|+ |||||..+|+.+..+........|+
T Consensus 155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 G---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred C---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 4 3578999999986555 467788887 9999999999999999998887 7999999999999998766667899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 637 RLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 637 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++|||+..+||++++.|++.||.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
No 225
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.57 E-value=6.9e-09 Score=127.02 Aligned_cols=537 Identities=10% Similarity=0.089 Sum_probs=298.8
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEE----EeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
...+.|.++.|-++...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .|+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 355789999999999999999999999999 444422 22 2233466899999999999 6666666777776
Q ss_pred EEcCCC------------------------eeeeeecCCCC------------------Ce----eEEEeeccCCccEEE
Q 001159 482 WDVVAG------------------------RKQYTFEGHEA------------------PV----YSVCPHHKESIQFIF 515 (1135)
Q Consensus 482 wd~~~~------------------------~~~~~~~~h~~------------------~v----~~i~~~~~~~~~~l~ 515 (1135)
.+ ++. +....|.|..+ .+ ..+.++..+||.+++
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 54 211 11112221110 01 223344467889999
Q ss_pred EEEc---C---CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc---
Q 001159 516 STAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF--- 586 (1135)
Q Consensus 516 s~s~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--- 586 (1135)
+.+. . ..+|+|+-+ +.....-..-.+--.+++|-|.|++|++... ..+...|.+|. ++|-.-..|...
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 8875 2 579999754 3322222222333457899999999998764 23345677776 445544444432
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
....|..+.|++|+..|+..-.|. |.+|...+.. +.+.+..... ..+..+.|+| +...|...+.+|.+..++..-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 344789999999999999977655 9999998865 3344443332 2355699999 555677777778887766532
Q ss_pred CchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 001159 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
....-..... .|...++.-+
T Consensus 381 ~v~~s~~~~~------------------------------------------------------------~D~g~vaVID 400 (928)
T PF04762_consen 381 DVSRSPGSSP------------------------------------------------------------NDNGTVAVID 400 (928)
T ss_pred EEEecCCCCc------------------------------------------------------------cCceEEEEEe
Confidence 1000000000 0111111222
Q ss_pred cccccccccCCcCCccce--eEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCee
Q 001159 744 VDKIKSWRIPDISDPSQI--KALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 821 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 821 (1135)
..++.+-.+.....+... ..+.+ ...| ..++|++++..+++...||.+.+|.+...............
T Consensus 401 G~~lllTpf~~a~VPPPMs~~~l~~-----~~~v-~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~---- 470 (928)
T PF04762_consen 401 GNKLLLTPFRRAVVPPPMSSYELEL-----PSPV-NDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS---- 470 (928)
T ss_pred CCeEEEecccccCCCchHhceEEcC-----CCCc-EEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh----
Confidence 234444444433322222 23332 3456 99999999988999999999999987654322110100000
Q ss_pred ecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C---CeEEEEECCCcc---EEEEEeCCCCCeEEEEEecCC
Q 001159 822 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 822 ~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d---g~i~vwd~~~~~---~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
.............. . ...+..++|..+..+++... + ..+.++++...+ .+.....-...+..+...+ .
T Consensus 471 -~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 545 (928)
T PF04762_consen 471 -SISLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-D 545 (928)
T ss_pred -hccccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-C
Confidence 00000000000000 1 56678899988888777766 3 468888875332 2333333344555555555 4
Q ss_pred CcEEEEEeCCCcEEEEEccccee-eEEecCcCCCeEEEEEcCCCC---eEEEEcCCCcEEEEeCCCCceeceeeeecCCC
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 970 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 970 (1135)
...++.-..+|.+...+...... +..|..-.. -..+....+.. .++.-+..+.+++ .+.. +.
T Consensus 546 ~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~-----la---- 611 (928)
T PF04762_consen 546 SGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCP-WMEVCQINGSEDKRVLFGLSSNGRLYA----NSRL-----LA---- 611 (928)
T ss_pred CcEEEEEECCCEEEEeecCCCccccccCCCCCc-EEEEEEECCccceeEEEEECCCCEEEE----CCEE-----Ee----
Confidence 44466677899998776554322 122332211 22233222322 3444444444432 1111 11
Q ss_pred CCCCCCCceEEEECCCCcEEEE-EecCeEEEEecC--CceeeccCCCCC--CCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 971 RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK--LECSRSWSPKDA--LPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 971 ~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~--~~~~~~~~~~~~--h~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
..+++.+++ +.+|+. .....+++.++. ...+........ +...++ --..|..|+++-....=.|.
T Consensus 612 -----~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R---~VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCR---RVERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCccccccccccc---cCccCCEEEEEeCCCceEEE
Confidence 234555553 444444 667778888875 111111100000 011122 22567888887666566678
Q ss_pred ECCCceee
Q 001159 1046 DAETLRFR 1053 (1135)
Q Consensus 1046 d~~~~~~~ 1053 (1135)
.+..|.+-
T Consensus 682 QmPRGNLE 689 (928)
T PF04762_consen 682 QMPRGNLE 689 (928)
T ss_pred EcCCCchh
Confidence 88877654
No 226
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=2.3e-13 Score=134.07 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=182.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~- 485 (1135)
-..+|+|.+|++|+..+|++.....|.||............++..|...|+.++|+|... .|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998887777789999999999999999998 79999999999999983
Q ss_pred CCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee----EecCCCCcEEEEEEcCCCCEEEEE
Q 001159 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 486 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.++ +...+..++...+++.|+|.+ +.+++||.-..|.+|-++....-. .-....+.|.++.|+|++-+|++|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 333 334556689999999999977 799999999999999887655432 234456689999999999999998
Q ss_pred ecCCCCCCeEEEEECC-----C-------------CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 560 GTSKEGESHLVEWNES-----E-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~-----~-------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+. |+..+++..- + |+++..+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 6777777531 1 23334443 233479999999999999999999999999987654
Q ss_pred -eEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
.+....... -+..++.|-.+...+ .++.|
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv-~ag~~ 269 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVV-AAGYD 269 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCcee-ecCCC
Confidence 333333221 255667776555443 34444
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.6e-12 Score=148.13 Aligned_cols=237 Identities=11% Similarity=0.108 Sum_probs=158.6
Q ss_pred eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceeee
Q 001159 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~ 446 (1135)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence 78888887654321 3346678999999999999987643 457999999886532 2
Q ss_pred eEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCeE
Q 001159 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKI 523 (1135)
Q Consensus 447 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i 523 (1135)
+....+.+..++|+|||+. ++++.+.++ .|++||+.+++.. .+..+...+....|+|++ +.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCC--CEEEEEeCCCCCc
Confidence 2223334557899999995 233334444 5999999887654 444455567888998865 77766665 4455
Q ss_pred EEE--eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC
Q 001159 524 KAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 524 ~iw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
.+| |+.++.. ..+...........|+|||++|+..+.. ++...|++||+.++... .+.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCCC
Confidence 555 5554433 3344444456678999999999876642 23567999999888654 333221 234578999999
Q ss_pred EEEEEeCCCe---EEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 602 RFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 602 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
.|+.++.++. +++++++ +.....+..+.. .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999886654 6777874 555555654433 577788887
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.5e-14 Score=149.08 Aligned_cols=279 Identities=15% Similarity=0.173 Sum_probs=216.6
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
.....+.|+.+|++ ++.|+..|.|..+|..++...... .-...|.++.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh
Confidence 35678999999996 556778999999999998765421 133568899999999999988
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
....++|||-.. ..++ .+..| ..|..+.|.|--- +|++++..|.++.-|+.+|+.+..+....+.+..++-+
T Consensus 189 -QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 -QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred -hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 456699999764 4444 33333 4689999999765 89999999999999999999999999889999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.+ ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+++++.|. |..++|||++....+.++...
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC
Confidence 876 78999999999999999999999999999999999999999999999986 888999999988877777662
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEE-CCCC--ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWD-MDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
. ....+++|..| +++++....|.||. .-.+ ..-..+-.|.-...|..+.|.|-...|-+|...|.-.|.=.-.
T Consensus 335 ~--~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 335 H--PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred C--Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2 56778888655 44555556899994 2221 1111122222234789999999877888877766655553333
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
|
T Consensus 411 G 411 (545)
T KOG1272|consen 411 G 411 (545)
T ss_pred C
Confidence 3
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=6.5e-13 Score=139.64 Aligned_cols=252 Identities=10% Similarity=0.122 Sum_probs=169.1
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE-----cCCCCe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW-----GPDGLM 422 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----spd~~~ 422 (1135)
.+....++-.|++|++-- ...+.+|++..+..+.. ++....+.+.. -.|=+| .|.+--
T Consensus 125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~gt~--P~cHdfn~~~a~~~g~d 187 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKGTS--PTCHDFNSFTATPKGLD 187 (636)
T ss_pred ceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccCCC--CceecccccccCCCCcc
Confidence 566666777787766543 34789999886544331 22333333322 222233 456778
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEee--cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
|.+|-.-|.|.+.|....+ +....... -.+..|+|+.|-|.+.. .++.+-.+|.++++|.. +....
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~ 255 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA 255 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence 8899999999999977632 22111111 12468999999998776 56777789999999961 11122
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
+...+.+-.++..+.....-+. .+...+..+......|...+|+|||++|++.+. |+.++|+|..+.+++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL 325 (636)
T ss_pred CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence 2222222223333332211110 111233334444558999999999999999985 999999999998888
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
..++..-+ ...|++|+|||++|++|++|..|.||.+...+.+..-.+| ...|+.|+|.
T Consensus 326 g~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 326 GVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeec
Confidence 77777666 7999999999999999999999999999998888776655 4589999998
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=3.5e-14 Score=146.36 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=193.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
-.-..+.++.+|++|+.|+..|.|-.+|..++.... ++. -...|.++.|..+.+ ++|.+ ..+.++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 346789999999999999999999999999976544 333 244699999999887 56555 477999999 8899
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..|+-+|-+..+-.|.. +|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99988754 578999999876 67888999999999999999999888888888999999998877777764 899
Q ss_pred EEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
|.+|.....+++..+-+|.+ +|.++++.++|.+++++|.|..++|||++....+.++... .....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-cee
Confidence 99999999999999999988 9999999999999999999999999999998877666542 256788898776 444
Q ss_pred EEECCCcEEEEE
Q 001159 649 VTTSDNGIKILA 660 (1135)
Q Consensus 649 ~~~~dg~i~iwd 660 (1135)
.+ ....+.||.
T Consensus 350 ~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 350 LS-YGDHVQIWK 360 (545)
T ss_pred ee-cCCeeeeeh
Confidence 44 344899994
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=3.8e-13 Score=141.33 Aligned_cols=210 Identities=19% Similarity=0.234 Sum_probs=146.0
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCc-ceeEecccceeeeEEecccc--CCCCCcccc-
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGL-SLLALASNAVHKLWKWQRTE--RNPSGKATA- 815 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~-~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~- 815 (1135)
+.-..+.+.+.+.... ...+.+..........+ +++.|-|.+. .+++...+|.+.+||..... ..+.-....
T Consensus 190 IGf~tGqvq~idp~~~---~~sklfne~r~i~ktsv-T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 190 IGFTTGQVQLIDPINF---EVSKLFNEERLINKSSV-TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred EeeccCceEEecchhh---HHHHhhhhcccccccce-EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 3333477777665431 11122222223344677 9999998554 45566669999999763311 111100000
Q ss_pred --cccCeeecCCCC-cceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEe
Q 001159 816 --NVAPQLWQPPSG-TLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH 891 (1135)
Q Consensus 816 --~~~~~~~~~~~~-~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s 891 (1135)
.+.+..|-.... ..+..-..+ ...|...+|||||++||+.+ ||.+||||..+.+++...+..-+...|++||
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~----~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIG----EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred CCeeEEeeeeccccCCccceeEec----cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 011111111111 111111112 66888999999999999999 9999999999999888888778899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC-----------------------------------C
Q 001159 892 PQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-----------------------------------T 936 (1135)
Q Consensus 892 p~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-----------------------------------d 936 (1135)
| ||++|++|++|-.|.||.+...+.+..-.+|..-|+.|+|.| +
T Consensus 342 P-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~ 420 (636)
T KOG2394|consen 342 P-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAE 420 (636)
T ss_pred C-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcC
Confidence 9 999999999999999999999999999999999999999983 0
Q ss_pred C-------------CeEEEEcCCCcEEEEeCCCCc
Q 001159 937 L-------------NALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 937 ~-------------~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
+ -++.+++.|..+.+||+....
T Consensus 421 ~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 421 GCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCcccccccccceEEEeecccccceEEEEecchhh
Confidence 1 257789999999999998755
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.6e-12 Score=144.38 Aligned_cols=237 Identities=10% Similarity=0.026 Sum_probs=161.8
Q ss_pred ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceee
Q 001159 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1135)
Q Consensus 369 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~ 445 (1135)
..|.+||..+..... +..|...+.+.+|||||+.|+..+. +..|.+||+.++...
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 378888886543221 4567889999999999999998764 468999999887542
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CC-
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG- 521 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg- 521 (1135)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+........|+|++ ..|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCC
Confidence 34556677889999999995 3445665654 77789887764 4566666667778898865 66766653 33
Q ss_pred -eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 522 -KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 522 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
.|.+||+..+.. ..+......+....|+|||+.|+..... .+...|.+||+.++.. +.+... . .+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCC
Confidence 577778765443 3333344556778899999999877632 2345799999865543 333322 1 45678999999
Q ss_pred CEEEEEeCC------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 601 NRFLAAGDE------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 601 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
+.|+..+.+ ..++++|+..+.. ..+... ..+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence 998875532 3688888876554 344321 1356667766
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.2e-12 Score=147.06 Aligned_cols=238 Identities=9% Similarity=0.025 Sum_probs=155.0
Q ss_pred CccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhc
Q 001159 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|..|...........+...+.+.+|||||+.++.+.. .+..|.+|++.+|+... +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 3455555444444444457778999999999996655432 24579999998875432 1
Q ss_pred cCCCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC-CCc--
Q 001159 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKM-- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-d~~-- 478 (1135)
....+.+..++|||||+.|+.. +.+| .|++||+++++.. .+..+...+....|+|||+ .|+..+. ++.
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1122334568999999998875 3344 5889999886533 3344555678999999999 4554443 444
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
|.++|+.++.. ..+..+........|+|++ +.|+..+.+ ..|.+||+.++... .+.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCE
Confidence 44556666543 3444444455677888755 677665543 35888998876543 3332 223346789999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
|+..+.++ +...+.++++ +|...+.+.++.+ .+...+|+|
T Consensus 388 i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887532 2445788887 4666667776655 677788886
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.6e-12 Score=130.37 Aligned_cols=272 Identities=11% Similarity=0.134 Sum_probs=193.6
Q ss_pred CCCeeEEEEecCCCeEEEEEe-ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGT-NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
...|..++|--+++.=+..+. .+..+............. .|++.. ......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence 347788888777654333343 566666666665544322 122211 22345566666553 33677
Q ss_pred EEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCC--CcEEEEEcCCCeeeeeecC------
Q 001159 425 VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 495 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~------ 495 (1135)
+|-.+|.+.+|..+.+..- .....+..+ ..+..|.-++...+ ++++||.. ..+.+||++..+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 7889999999999854311 111123323 45777777777665 67789998 8999999998866554321
Q ss_pred -CC--CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 496 -HE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 -h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
-. -.++++.|.+..+...|++++.-+.+++||.+..+. +..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 12 235567787775558999999999999999987654 4577888899999999999999999854 778999
Q ss_pred EECCCCeEEEE-eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
+|.+.++.... +.+..+ .++++..+|.+++++++|-|..|||+|+.+.+++....... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666666 89999999999999999999999999999977776654432 245555544
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.6e-10 Score=125.37 Aligned_cols=516 Identities=11% Similarity=0.120 Sum_probs=305.8
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.-+++. |...|.-+.|+.+.+. |.++..+|.|.||-+-.|.... .++-...++.|.+++|+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~E-----------------EMiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCE-----------------EMINNRNKSVVVSMSWN 124 (1189)
T ss_pred hhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHH-----------------HHhhCcCccEEEEEEEc
Confidence 356676 9999999999999884 7888999999999998876432 22233467789999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-------ee
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-------KQ 490 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-------~~ 490 (1135)
.||..++....||.|.+=.++..+.... .+.+. -...+.|++|.+ .++.+-.+|.++++|.+..- +.
T Consensus 125 ~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~ 198 (1189)
T KOG2041|consen 125 LDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCE 198 (1189)
T ss_pred CCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceE
Confidence 9999999999999999988887654332 22222 245789999998 56777788999999954321 11
Q ss_pred ee----ecCCCCCeeEEEeecc------CCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 491 YT----FEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 491 ~~----~~~h~~~v~~i~~~~~------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.. +......|..+.|... ++...++.+-.+|.+.+-.-.+......+... -.+....|+++|..|+++|
T Consensus 199 Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 199 VNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred EeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEcc
Confidence 11 1112223555655421 24478999999999998866655555544433 6788999999999999998
Q ss_pred cCCCC----C-CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 561 TSKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 561 ~~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.+.+. + +.|..+. .-|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++..-....+..
T Consensus 278 ~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~------- 347 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE------- 347 (1189)
T ss_pred CcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee-------
Confidence 64432 2 2455555 45888888887766 89999999877666665 578898877764333222221
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 715 (1135)
.+.|--.+.- .-.-.|.+||..+....++...+...-. .
T Consensus 348 -TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~a-~----------------------------------- 386 (1189)
T KOG2041|consen 348 -TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENMA-F----------------------------------- 386 (1189)
T ss_pred -EEEEEEccCC----CcceEEEEEecccChhhhhhhcceeehh-e-----------------------------------
Confidence 1111110100 0122578899988866665554321110 0
Q ss_pred CCCCccccccccCCCCccccccccccc-ccccccccc-cCCcCCccceeEeecCC---cccccceEEEEEEecCCcceeE
Q 001159 716 GPPAVSISSLGTIDGSRLVDVKPRVAE-DVDKIKSWR-IPDISDPSQIKALRLPD---SIAASKVVVRLIYTNSGLSLLA 790 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~iw~-~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~s~dg~~l~~ 790 (1135)
..+.-.++.. .++.+.-+. +.+....-.+..-...+ ...-..| ...-..-++..++.
T Consensus 387 -----------------~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdi-rP~Fv~vn~~~vvi 448 (1189)
T KOG2041|consen 387 -----------------YREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDI-RPKFVCVNGICVVI 448 (1189)
T ss_pred -----------------ecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCccee-eeeEEEecceEEEE
Confidence 0000011111 112222110 00000000000000001 0111112 22222334554444
Q ss_pred ecccceeeeEEeccccCCCCCcccccc---cCeeecCCCC----ccee--ccCCCCCCCCCceEEEEeecCCCEEEEEe-
Q 001159 791 LASNAVHKLWKWQRTERNPSGKATANV---APQLWQPPSG----TLMT--NDINESKPTEESAACIALSKNDSYVMSAS- 860 (1135)
Q Consensus 791 ~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~--~~~~~~~h~~~~i~~l~~s~dg~~la~~~- 860 (1135)
.+ ...+.+|.....+.......+... ...+=|..+| .+-. ..+.| - ..+|.+++.+ .+++.++.
T Consensus 449 AS-~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G--~-~DpICAl~~s--dk~l~vare 522 (1189)
T KOG2041|consen 449 AS-EERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLG--S-KDPICALCIS--DKFLMVARE 522 (1189)
T ss_pred ec-cccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeecc--C-CCcceeeeec--ceEEEEEec
Confidence 44 446788987654322111110000 0001111222 0000 11122 2 6788888774 47888887
Q ss_pred CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc---cceeeE-EecCcCCCeEEEEEcCC
Q 001159 861 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---VDEVKT-KLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 861 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~---~~~~~~-~l~~h~~~i~~l~~s~d 936 (1135)
.|.|.-+.+.+..+..... -+..|..+++.- +...+|.-..-|.+.+.|+. +|..+. -++.....|+++.|..|
T Consensus 523 SG~I~rySl~nv~l~n~y~-~n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~d 600 (1189)
T KOG2041|consen 523 SGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQD 600 (1189)
T ss_pred cCceEEEEecceeeeeccc-cCchheeEeecc-CcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccC
Confidence 7999999998876655543 455788888887 77888888888999998886 333333 34445567999999888
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001159 937 LNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~ 956 (1135)
...|..--....+.|++-..
T Consensus 601 Np~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 601 NPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred CchHHhhhhhceEEEecCcC
Confidence 76655544444566665443
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.7e-12 Score=145.50 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=147.3
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3567789999999999999987643 46999999987543 23334456678999999994 3346677887666
Q ss_pred EEcC-CCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|.+. .+.....+..+.+.+....|+|++ +.|+..+ .+|...+|.++.. .....+..........+|+|||++|+.
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEE
Confidence 6543 233355666666666778898865 6666555 4567777765432 222223333334456789999999987
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC---eEEEEECCCCceEEEEeCCCCCCCc
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
.+.. .+...|++||+.+++....... . ......|+|||+.|+.++.++ .+++.++. +.....+..+.+ .+
T Consensus 345 ~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g--~~ 417 (427)
T PRK02889 345 ISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGG--DV 417 (427)
T ss_pred EEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCC--CC
Confidence 6532 2245799999988875543322 1 335688999999998876443 35566663 555555554322 46
Q ss_pred ceEEEcC
Q 001159 636 PRLRFNK 642 (1135)
Q Consensus 636 ~~~~~~~ 642 (1135)
...+|+|
T Consensus 418 ~~p~wsp 424 (427)
T PRK02889 418 REPSWGP 424 (427)
T ss_pred CCCccCC
Confidence 6677776
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3e-12 Score=146.98 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=158.7
Q ss_pred ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceee
Q 001159 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1135)
Q Consensus 369 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~ 445 (1135)
..|.+||...+.... +..+...+.+.+|+|||+.|+.++. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 468899986543221 3456778999999999999998874 346999999887542
Q ss_pred eeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCe
Q 001159 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK 522 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~ 522 (1135)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+|++ ..|+.++ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 23344455668899999995 334555555 699999988774 4555566566778898854 6776665 4555
Q ss_pred --EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 523 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 523 --i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|.++|+.+++. ..+..........+|+|||++|+.... .++...|.+||+.+++.. .+... . ......|+|||
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCC
Confidence 55566655443 233333444557899999999987653 223457999999888765 33321 1 23457899999
Q ss_pred CEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 601 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 601 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
++++..+. .+.|+++++.. .....+..+.+ .+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccCCC--CCCCCccCC
Confidence 98887664 34688888864 44455543322 456677776
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.1e-12 Score=146.22 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=152.3
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhh
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
...+|..|.........+.+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3455555554444444455778899999999999655544333 369999998886432
Q ss_pred ccCCCcceEEEEEcCCCCeEEE-EeCCCeEEEEEe--CCCCceeeeeEeecccCCEEEEEEecCCCeEEEE-EEcCCCcE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMI 479 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las-~~~dg~i~iwd~--~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~-s~~~d~~i 479 (1135)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+...+....|+|||+. |+ +...++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCc
Confidence 2223345678999999998875 566777666655 4433 22 34455556678899999995 44 34445666
Q ss_pred EEEEc--CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 480 ~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
.+|.+ .++.. ..+..+........|+|++ ++|+..+.++ .|.+||+.+++... +.. ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAA-QRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCce-EEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCC
Confidence 66654 44443 2222222334456787754 7887766554 69999998766443 322 23346789999999
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.|+..+.. .+...+++.+. +|...+.+..+.+ .+...+|+|
T Consensus 384 ~l~~~~~~-~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 384 YILYATQQ-GGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEEec-CCCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 99987743 23456777777 4666666654443 566677776
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=5.7e-11 Score=117.58 Aligned_cols=239 Identities=10% Similarity=0.099 Sum_probs=164.5
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE-E
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-A 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las-~ 426 (1135)
....++|+.|.. -+++|. |.-.+||+++.-++..++.+ +.+.+.-+..---.++||. |
T Consensus 7 ~~lsvs~NQD~S-cFava~-~~Gfriyn~~P~ke~~~r~~-------------------~~~G~~~veMLfR~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVAT-DTGFRIYNCDPFKESASRQF-------------------IDGGFKIVEMLFRSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEEe-cCceEEEecCchhhhhhhcc-------------------ccCchhhhhHhhhhceEEEec
Confidence 455699999987 566665 55689999886444322111 1111111111112334444 3
Q ss_pred eCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeeeecCCCCC
Q 001159 427 FSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAP 499 (1135)
Q Consensus 427 ~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~ 499 (1135)
+.+ ..+.|||=...+++. ++ ....+|.++.+.++ .|+..- ++.|.||... +.+.++.+.....|
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 322 469999954444333 44 35678999999876 455554 6689999987 56666666543322
Q ss_pred eeEEEeeccCCccEEEE-EEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 500 VYSVCPHHKESIQFIFS-TAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
=--++..|..+..+|+. |-.-|.|++-|+..... ...+.+|...|.|++.+-+|..+|+++. +..-|++||..+
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~ 213 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTED 213 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCC
Confidence 22233344444344444 34569999999987666 5788999999999999999999999985 344589999999
Q ss_pred CeEEEEeecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 577 GAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 577 ~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|+.+..++.. ....|.+++|||+..+|+++|+.|++.|+.++.
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999998743 334699999999999999999999999998875
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.5e-12 Score=146.39 Aligned_cols=237 Identities=12% Similarity=0.111 Sum_probs=153.4
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec--cceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++.+|...........+...+.+++|||||+.++.+... ...|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 3455554444444445577889999999999965544322 3479999998876432 22
Q ss_pred CCCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCc--E
Q 001159 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~--i 479 (1135)
...+...+++|||||+.|+.. +.+| .|++||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 233445678999999988654 4555 5999999887532 3445555567899999999 455444 4444 6
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
+++|+.+++.. .+..+.......+|+|++ +.|+..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~-~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAE-RLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeE-EeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 66777666543 333233445567888755 6776655433 6999998776544 333 22244567899999998
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
+..+.. .+...|++++.. +...+.+..+.+ .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877643 345679999885 445555554433 556667765
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.7e-13 Score=142.35 Aligned_cols=238 Identities=11% Similarity=0.176 Sum_probs=165.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|.+-|+|++|+.+|. +|++|+.|-.+.|||.-..+.++. +-.||...|.++.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999987666543 3468999999999999 5678
Q ss_pred EEEEeCCCeEEEEEeCCCC-------ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee------
Q 001159 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~------ 489 (1135)
+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.++++||+|+-+|++....
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12233356679999999999999965 899999999999999986321
Q ss_pred -ee---eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-----ecCCCCcEEEEE-EcCCCCEEEEE
Q 001159 490 -QY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMA-YSADGTRLFSC 559 (1135)
Q Consensus 490 -~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~-~s~~~~~l~~~ 559 (1135)
.. .+...--...++.++|... .+|+.|+.|--.++||.+....... .........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 11 1111223466888888865 7999999999999999643222110 000111111221 122111 0
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
. .+ |...... ..++-++|+|+|..|++.-....|+++|+..++....+
T Consensus 264 n----~~----------gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 N----SQ----------GNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred C----cc----------cccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 01 1000000 13566889999987777655668999999987765544
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=2.5e-12 Score=127.96 Aligned_cols=344 Identities=13% Similarity=0.242 Sum_probs=217.1
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC-CCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.++.++|+.+ .++....-|..+-+++.+.|.++++|-- +.++.-..+... ...+++++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceEE
Confidence 4566778777 6777777777888999999999999954 445544444332 234688999999999999999999988
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
-+.+..........+
T Consensus 94 efs~sedfnkm~~~r----------------------------------------------------------------- 108 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLK----------------------------------------------------------------- 108 (404)
T ss_pred EEEhhhhhhhcchhh-----------------------------------------------------------------
Confidence 876643311110000
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 817 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 817 (1135)
.| ..|...+ ..+.|+-.-.++++.+.|..+. |...
T Consensus 109 -----------~~------------------~~h~~~v-~~~if~~~~e~V~s~~~dk~~~-~hc~-------------- 143 (404)
T KOG1409|consen 109 -----------DY------------------LAHQARV-SAIVFSLTHEWVLSTGKDKQFA-WHCT-------------- 143 (404)
T ss_pred -----------hh------------------hhhhcce-eeEEecCCceeEEEeccccceE-EEee--------------
Confidence 00 0145555 7777877777788888776554 3221
Q ss_pred cCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEEC--CCccEEEEEeCCCCCeEEEEEecCC
Q 001159 818 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM--MTFKVMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~--~~~~~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
+.+..+..... ....+++.+.-. +...|. .|.|.+-.+ ....++.++.+|.+.+.+++|.| .
T Consensus 144 -------e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~ 208 (404)
T KOG1409|consen 144 -------ESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-G 208 (404)
T ss_pred -------ccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-C
Confidence 11111000000 011111111111 444444 455555443 45678899999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEccccee-eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC----
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---- 969 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---- 969 (1135)
..+|.+|..|..|.+||+-..+- ..++.+|.+.|..+..-+.-+.|++++.||.|.+|+++.........+..-.
T Consensus 209 ~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c 288 (404)
T KOG1409|consen 209 QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKC 288 (404)
T ss_pred CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhh
Confidence 89999999999999999986543 4578899999999999999999999999999999999864432221111000
Q ss_pred --------------------CCC--CCCCCceEEEECCCCcEEEEEecCeEEEEecCCceee-----ccCCCCCCCCCEE
Q 001159 970 --------------------GRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSR-----SWSPKDALPAPIS 1022 (1135)
Q Consensus 970 --------------------~~~--~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~-----~~~~~~~h~~~i~ 1022 (1135)
-|. .....|...+-+....+...+..-.+|+-|.-...+. .+...+.-...|+
T Consensus 289 ~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIt 368 (404)
T KOG1409|consen 289 NQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGIT 368 (404)
T ss_pred CchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccccccee
Confidence 000 0001222222222222333344555666655111111 1222222245789
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1023 SAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1023 ~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+|.+..+-.+|+|++.|..|+|||+..
T Consensus 369 amhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 369 AMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEhhhhccceeecCCceEEEEEechh
Confidence 999999989999999999999999875
No 243
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.48 E-value=3.7e-08 Score=120.66 Aligned_cols=516 Identities=14% Similarity=0.164 Sum_probs=287.6
Q ss_pred cceEEEEEcCCCCeEEEEeC--CC--eEEEEEeCCCCceeeeeEee-----cccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 409 ISVNRCVWGPDGLMLGVAFS--KH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~--dg--~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
..+...+|.+....+.++.. .. .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777778776654444333 22 34444443333222222332 2346799999999998 57777788889
Q ss_pred EEE----EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc---------------C--------CC
Q 001159 480 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---------------Y--------LG 532 (1135)
Q Consensus 480 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~---------------~--------~~ 532 (1135)
.+. +..+... .....-...|.+++|+|+. ..|+..+.++++.+-+-+ . ++
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 988 5443322 2222346789999999976 788888888888776321 0 00
Q ss_pred ceeEecC------------------------CCCcEEEEEEcCCCCEEEEEecCCC-C-CCeEEEEECCCCeEEEEeecc
Q 001159 533 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 533 ~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
....+.+ ....-..++|-.||.++++.+.+.. + ...|++|+-+ |.+..+-..-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0001100 1224457889999999998775332 2 4789999955 7655444422
Q ss_pred cCCceeEEEecCCCCEEEEEeC---CCeEEEEECCCCceEEEEeCC--CCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.+ --.+++|-|.|+.|++... ...|.+|.-+ |-.-..+... .....|..+.|++|+..||....| .|.+|-.
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~ 332 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTR 332 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEe
Confidence 22 3457899999999998753 4567777654 3333333332 233478999999999999998866 4999987
Q ss_pred CCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccc
Q 001159 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1135)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
.+-.-.++.--
T Consensus 333 ~NYHWYLKqei--------------------------------------------------------------------- 343 (928)
T PF04762_consen 333 SNYHWYLKQEI--------------------------------------------------------------------- 343 (928)
T ss_pred eCCEEEEEEEE---------------------------------------------------------------------
Confidence 65411111000
Q ss_pred cccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-CcceeEecccceeeeEEeccccCCCCCcccccccCe
Q 001159 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 742 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
..+ ....+ ..+.|+|. ...|.+.+.+|.+..+++.
T Consensus 344 -----------------------~~~---~~~~~-~~~~Wdpe~p~~L~v~t~~g~~~~~~~~----------------- 379 (928)
T PF04762_consen 344 -----------------------RFS---SSESV-NFVKWDPEKPLRLHVLTSNGQYEIYDFA----------------- 379 (928)
T ss_pred -----------------------Ecc---CCCCC-CceEECCCCCCEEEEEecCCcEEEEEEE-----------------
Confidence 000 00111 33556653 2335555555666665542
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEEEEEeCCeEEEEECCCccE-----EEEEeCCCCCeEEEEEecCC
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~la~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~ 894 (1135)
|+...+.. .+| |...+++.+..++.+-.+...-. ...+. -...|.+++|++ +
T Consensus 380 -~~v~~s~~-------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~ 437 (928)
T PF04762_consen 380 -WDVSRSPG-------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-S 437 (928)
T ss_pred -EEEEecCC-------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-C
Confidence 11111100 011 22334444455666666554311 12333 346899999999 6
Q ss_pred CcEEEEEeCCCcEEEEEcccceee--------EEec----------CcCCCeEEEEEcCCCCeEEEEcCC---CcEEEEe
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEVK--------TKLK----------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWS 953 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~~--------~~l~----------~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iwd 953 (1135)
+..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.+++
T Consensus 438 ~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 438 NSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred CCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEE
Confidence 767899999999999986543211 1111 123457889998888777766654 5788888
Q ss_pred CCCCcee-ceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceee--ccCCCCCCCCCEEEEEEeeC
Q 001159 954 IDKWEKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR--SWSPKDALPAPISSAIYSCD 1029 (1135)
Q Consensus 954 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~~~~s~d 1029 (1135)
+...+.. ......... ..+..+...++...++. ..+|.+..++..+.... .+.. ..+-..++...+
T Consensus 518 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~----~c~~~~~~~~~~ 587 (928)
T PF04762_consen 518 IDDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ----PCPWMEVCQING 587 (928)
T ss_pred eccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC----CCcEEEEEEECC
Confidence 7543311 111111111 23444444555543444 77888887766333222 2211 222233333333
Q ss_pred CC---EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1030 GL---LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1030 ~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.. .++.-+..|.+++ ++..++. ... ++..+ +.+|+.......+++.++.
T Consensus 588 ~~~~~~~~GLs~~~~Ly~----n~~~la~--------------~~t--SF~v~---~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYA----NSRLLAS--------------NCT--SFAVT---DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ccceeEEEEECCCCEEEE----CCEEEec--------------CCc--eEEEE---cCEEEEEecCceEEEEECc
Confidence 33 3333344455543 3333321 122 33333 2466666777889999998
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=9.2e-11 Score=125.01 Aligned_cols=281 Identities=9% Similarity=0.100 Sum_probs=185.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
.+.+..++|++|+ ++|.+ .+..|.|++..++..+.+ .....+.++.|||-|.+|.+=
T Consensus 35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~ 91 (566)
T KOG2315|consen 35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTW 91 (566)
T ss_pred CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeecccccccccc
Confidence 4577889999998 66654 477999999988753321 122268999999999999872
Q ss_pred -----eC-----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 427 -----FS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 427 -----~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
.. .-.+.+|++.++. .+. .+..-...-++..|+.|.. ++.--..+.+++|++.+.+.+. -.-|
T Consensus 92 e~~~i~~~~~~~~pn~~v~~vet~~-~~s--~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~ 164 (566)
T KOG2315|consen 92 EPWAIYGPKNASNPNVLVYNVETGV-QRS--QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS 164 (566)
T ss_pred cccccccCCCCCCCceeeeeeccce-ehh--heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence 11 2347899999842 221 2222222226899999886 4444446689999987743322 1236
Q ss_pred CCCeeEEEeeccCCccEEEE-----EEcCCeEEEEeCcCCCceeE---ecCCCCcEEEEEEcCCCCEEE-EEecC-----
Q 001159 497 EAPVYSVCPHHKESIQFIFS-----TAIDGKIKAWLYDYLGSRVD---YDAPGNWCTMMAYSADGTRLF-SCGTS----- 562 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~-~~~~~----- 562 (1135)
...|+.+.++|.+.-..+++ .+.-..+++|.+.....-.. .......-..+.|++-|.-|+ .++.+
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77899999998854345544 35567799997762221111 111112334677888777544 33321
Q ss_pred --CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCcceE
Q 001159 563 --KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1135)
Q Consensus 563 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1135)
.-++.+++++++...... ......++|.++.|+++++.+++ |-.-..+.|+|++ ++++..+... +=+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~--V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVS--VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEE--EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----Cccce
Confidence 124567888888733333 33333448999999999987766 4577889999987 5666655422 45889
Q ss_pred EEcCCCCEEEEEEC---CCcEEEEEcCCC
Q 001159 639 RFNKEGSLLAVTTS---DNGIKILANSDG 664 (1135)
Q Consensus 639 ~~~~~~~~l~~~~~---dg~i~iwd~~~~ 664 (1135)
-|+|.|++++.++- .|.|.|||+.+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch
Confidence 99999999998887 478999999875
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.5e-11 Score=129.84 Aligned_cols=318 Identities=12% Similarity=0.185 Sum_probs=210.4
Q ss_pred cceeeecCCCCCCccc------cCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec-----------cceEEEEEcC
Q 001159 315 SDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVG 377 (1135)
Q Consensus 315 ~~~v~~s~~g~~~~~~------~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~-----------dg~i~iwd~~ 377 (1135)
-.-|.|||-|.+++.+ .|.+.....++.+.|. .|.-+.|||+.+ +|+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcc
Confidence 3448899999988775 3445556667777776 699999999998 5666532 2479999999
Q ss_pred CccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEE
Q 001159 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~ 457 (1135)
+|...+. |.+ +.+....-.-+.||.|++++|--..+ .|.||+..+-..+... .+ .-..|.
T Consensus 291 tG~lkrs--F~~--------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K-sl--ki~gIr 350 (698)
T KOG2314|consen 291 TGLLKRS--FPV--------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK-SL--KISGIR 350 (698)
T ss_pred ccchhcc--eec--------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc-cc--CCcccc
Confidence 9987764 221 11122222347899999999987775 4999998764332211 11 234688
Q ss_pred EEEEecCCCeEEEEEEcC-----CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEE----------EcCCe
Q 001159 458 DIAFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGK 522 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~ 522 (1135)
...|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.- +.-..
T Consensus 351 ~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 351 DFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred CcccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEee
Confidence 999999987 6664332 2356677777777776655443 444455555566777543 12223
Q ss_pred EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-C---eEEEEeecccCCceeEEEecC
Q 001159 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 523 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
+.|+.++..........-...|...+|-|.|+.+++.+.. +...++.+|.+++ . +++..+.. ...+.+.|+|
T Consensus 427 ~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsP 502 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSP 502 (698)
T ss_pred EEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcC
Confidence 5666666555544444445578899999999988866532 3466788888773 2 23344433 2567899999
Q ss_pred CCCEEEEE---eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC------CCcEEEEEcCCC
Q 001159 599 TRNRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1135)
Q Consensus 599 ~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 664 (1135)
.|++++.+ |..|.+.++|........+- ...+. ..+.+.|.|.|+++++++. |...+||+.+..
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhcc-Ccccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 99999875 46789999998853322221 11222 4578999999999999876 566788887654
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.6e-10 Score=115.99 Aligned_cols=281 Identities=11% Similarity=0.128 Sum_probs=183.7
Q ss_pred cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEeccc---ceeeeEEeccccCCCCCcccccccCe
Q 001159 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
+..|.+|++++.... .....+ ......+ +-++++|+++.|.++..+ |.|.-|.+
T Consensus 15 s~gI~v~~ld~~~g~--l~~~~~--v~~~~np-tyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTKTGE--LSLLQL--VAELGNP-TYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCcccc--cchhhh--ccccCCC-ceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 467889988742211 111111 1134455 889999999988887654 66666654
Q ss_pred eecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCC-ccEEEE--EeCCCCC----------e
Q 001159 821 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA----------A 885 (1135)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~--~~~h~~~----------v 885 (1135)
|..+|.+........ . ..+.+.++++++|++|+++. .|.|.++-+.. |.+... ...|.+. +
T Consensus 72 --D~~~G~Lt~ln~~~~-~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 --DPDDGRLTFLNRQTL-P-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred --cCCCCeEEEeecccc-C-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 334343222111100 1 33448899999999999998 69999999965 443222 2225444 8
Q ss_pred EEEEEecCCCcEEEEEeC-CCcEEEEEcccceeeEE----ecCcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCCCC--
Q 001159 886 TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTK----LKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW-- 957 (1135)
Q Consensus 886 ~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~~~----l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~~~-- 957 (1135)
.+..|.| ++++|++.+- --.|.+|++..|++... + .-....+.|+|+|++++..... -+++|.+|..+..
T Consensus 148 H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred ceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 8999999 8988888753 23699999998764322 2 2345678999999999877766 5899999999874
Q ss_pred ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe--cCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEE
Q 001159 958 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l 1033 (1135)
+......+..+............+..++||++|.++. ...|.+|.+ .+..+........+...-+.+.|+++|++|
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 2211112222222222235667899999999999974 457888888 444444433333335556889999999999
Q ss_pred EEEeCCC-eEEEEECC--Cceee
Q 001159 1034 YAGFCDG-AIGVFDAE--TLRFR 1053 (1135)
Q Consensus 1034 ~~~~~dg-~I~vwd~~--~~~~~ 1053 (1135)
+++..|+ .|.+|.++ ||++-
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEE
Confidence 9888764 58888776 44443
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=3.2e-10 Score=119.27 Aligned_cols=359 Identities=12% Similarity=0.142 Sum_probs=225.4
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEE
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 603 (1135)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|.-..+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3454444444444444566888999999999999865 345999998877655555432 68889999999999
Q ss_pred EEEeCCC---------------eEEEEECCCCceEEEEeCCCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEEcCCCchh
Q 001159 604 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1135)
Q Consensus 604 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 667 (1135)
.+-+..+ .+.+||..++..+..+.........+ -+.|+-+.+++|-.. ...+.|+++ ++..
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~- 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI- 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCcc-
Confidence 9865433 49999999999998887664431233 688888888777553 347888887 3311
Q ss_pred hhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccc
Q 001159 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1135)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1135)
..++.... +
T Consensus 164 ----~~~p~~~l--------------r----------------------------------------------------- 172 (561)
T COG5354 164 ----EEHPFKNL--------------R----------------------------------------------------- 172 (561)
T ss_pred ----ccCchhhc--------------c-----------------------------------------------------
Confidence 11111000 0
Q ss_pred cccccCCcCCccceeEeecCCcccccceEEEEEEecCCc--ceeE-----ecccceeeeEEeccccCCCCCcccccccCe
Q 001159 748 KSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQ 820 (1135)
Q Consensus 748 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 820 (1135)
...| ....++|.|. .|+. .+..+.+++|.+..+
T Consensus 173 ------------------------~~gi-~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~--------------- 212 (561)
T COG5354 173 ------------------------PVGI-LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN--------------- 212 (561)
T ss_pred ------------------------ccce-eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------------
Confidence 0111 3333333321 1111 122445555554321
Q ss_pred eecCCCCcceec-cCCCCCCCCCceEEEEeecCCCEEEEEe------------CCeEEEEECCCccEEEEEeCCCCCeEE
Q 001159 821 LWQPPSGTLMTN-DINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATF 887 (1135)
Q Consensus 821 ~~~~~~~~~~~~-~~~~~~h~~~~i~~l~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~h~~~v~~ 887 (1135)
..+.. .+. .-.-..+.|.+.|++++.-- ...+.|+++....+ .....-.++|..
T Consensus 213 -------s~l~tk~lf-----k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhd 279 (561)
T COG5354 213 -------SVLVTKNLF-----KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHD 279 (561)
T ss_pred -------CeeeeeeeE-----eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceecccccccee
Confidence 11110 000 11122455666666654321 24588999874433 333356789999
Q ss_pred EEEecCCCcEEEEE--eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC---CcEEEEeCCCCceece
Q 001159 888 LAFHPQDNNIIAIG--MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 888 l~~sp~~~~~lasg--~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iwd~~~~~~~~~ 962 (1135)
++|.| .++.+++. -.+..+-++|+... .... .....=..+.|||.+++++.++-| |.|-+||........
T Consensus 280 f~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~- 354 (561)
T COG5354 280 FTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA- 354 (561)
T ss_pred eeecc-cCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEE-
Confidence 99999 56555554 46788999998865 3333 334445678899999999998876 679999988755332
Q ss_pred eeeecCCCCCCCCCCceEEEECCCCcEEEEE-------ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEE
Q 001159 963 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYA 1035 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~ 1035 (1135)
....+ .....+.|+||++++.+. -|..|.|||+.+..+. ..+.+.|.|.|++.-+
T Consensus 355 ---~~~~~-----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~tt 416 (561)
T COG5354 355 ---GAFNG-----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTT 416 (561)
T ss_pred ---EEeec-----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCccccee
Confidence 22332 234677899999998873 3788999999666543 3466788888888777
Q ss_pred EeCCC
Q 001159 1036 GFCDG 1040 (1135)
Q Consensus 1036 ~~~dg 1040 (1135)
.+.+.
T Consensus 417 sSs~~ 421 (561)
T COG5354 417 SSSCP 421 (561)
T ss_pred eccCC
Confidence 76654
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.8e-10 Score=120.39 Aligned_cols=334 Identities=12% Similarity=0.118 Sum_probs=206.9
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-----eCC-----Ce
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-----GDE-----FQ 611 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-----~~d-----g~ 611 (1135)
......+++++|++++.+. +..+.|++..++..+.+.... .+..+-|+|.|.+|.+- ..+ -.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCCc
Confidence 3467788999999999875 667999999888644333332 46889999999988762 122 34
Q ss_pred EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCc
Q 001159 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+.+|++.++.....+...... -++..|+.|..+.+-- ..+.+.+|++.+-......+
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl-------------------- 163 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKL-------------------- 163 (566)
T ss_pred eeeeeeccceehhheehhhhc--Ccccccccchhhhhhh-hcceEEEEecCCccceeeee--------------------
Confidence 779999986665555543332 2578888887654432 34578888876531111111
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
|
T Consensus 164 -------------------------------------------------------------------------------~ 164 (566)
T KOG2315|consen 164 -------------------------------------------------------------------------------S 164 (566)
T ss_pred -------------------------------------------------------------------------------e
Confidence 1
Q ss_pred ccceEEEEEEecCCc--ceeE-----ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCce
Q 001159 772 ASKVVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 844 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~--~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i 844 (1135)
...| +.+.+||.+. .+++ .+.-+.++||.+.....+.... ....+ ...-
T Consensus 165 ~~~i-~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a-----------------~ksFF------kadk 220 (566)
T KOG2315|consen 165 VSGI-TMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA-----------------NKSFF------KADK 220 (566)
T ss_pred ccce-eeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh-----------------hcccc------ccce
Confidence 2222 4444444321 1111 1233567777654221111000 00000 1122
Q ss_pred EEEEeecCCCEE---EEEe-C---------CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEE--EeCCCcEEE
Q 001159 845 ACIALSKNDSYV---MSAS-G---------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI--GMEDSSVQI 909 (1135)
Q Consensus 845 ~~l~~s~dg~~l---a~~~-d---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~las--g~~dg~v~i 909 (1135)
..+.|.+-|.-| ++.. | .++++.+++...+...+. -.++|.++.|+| .++-+++ |-.-..+.|
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTI 298 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEE
Confidence 234555544421 2222 3 358888888444444443 578999999999 6755544 445678999
Q ss_pred EEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC---CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 910 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
||++ +.++..+ -.++-.++-|+|.|++++.+|-+ |.|-|||+.+.+.+.. ... ..-+-+.|+||
T Consensus 299 fnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~-----~~a-----~~tt~~eW~Pd 365 (566)
T KOG2315|consen 299 FNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK-----FKA-----ANTTVFEWSPD 365 (566)
T ss_pred EcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc-----ccc-----CCceEEEEcCC
Confidence 9986 5555555 45777899999999999988855 7899999999664332 221 33478899999
Q ss_pred CcEEEEE-------ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEee
Q 001159 987 QTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC 1028 (1135)
Q Consensus 987 g~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~ 1028 (1135)
|++++++ -|+.++||+.+|..+...... .+...+.|-|
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~----sEL~qv~W~P 410 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK----SELLQVEWRP 410 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecCceeehhhhh----HhHhheeeee
Confidence 9999984 288999999988877654332 1466677765
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=6e-11 Score=126.04 Aligned_cols=202 Identities=20% Similarity=0.243 Sum_probs=133.0
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCc
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~ 529 (1135)
.|...-+.|..+|||++ +++||...-.|++||+..-.. .|..|. ..+..+....+ |-..++.-..|.+|.+-..
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAK- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEccccee--eeeecccccceeEEEecc-chhhheEeecCceeeehhh-
Confidence 47778899999999998 789999999999999876543 333342 23333322211 2234444455666654421
Q ss_pred CCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC
Q 001159 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1135)
Q Consensus 530 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d 609 (1135)
.+.-..+..+ ..-..++++.-.--|++++. ...|+-+++..|..+..|..... .++++..++....|++|+.+
T Consensus 124 -~G~hy~~RIP-~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 124 -YGRHYRTRIP-KFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTED 196 (703)
T ss_pred -cCeeeeeecC-cCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEecccC
Confidence 1111111111 11123444433333443332 44599999999999998887766 89999999999999999999
Q ss_pred CeEEEEECCCCceEEEEeCCCC---------CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 610 FQIKFWDMDNMNMLTTVDADGG---------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|.|.+||.+....+.++....+ ...|+++.|+.+|-.+++|+.+|.+.|||+++.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 9999999998877776653322 234677777777777777777777777777655
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=3.5e-10 Score=125.43 Aligned_cols=254 Identities=18% Similarity=0.204 Sum_probs=161.2
Q ss_pred EEEEEecCCcceeEecc----cceeeeEEeccccCCCCCcccccccCeeecCCCCcc--eeccCCCCCCCCCceEEEEee
Q 001159 777 VRLIYTNSGLSLLALAS----NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL--MTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~~i~~l~~s 850 (1135)
..++++|++++|.+... +|.|..|++... ++.+ +...... ......++++
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~--------------------~g~L~~~~~~~~~----g~~p~~i~~~ 95 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD--------------------TGTLTLLNSVPSG----GSSPCHIAVD 95 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT--------------------TTEEEEEEEEEES----SSCEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCC--------------------cceeEEeeeeccC----CCCcEEEEEe
Confidence 66788999998888866 467777766431 1211 1111101 4556789999
Q ss_pred cCCCEEEEEe--CCeEEEEECCC-ccEEEE---Ee----------CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcc
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMT-FKVMTM---FM----------SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVR 913 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~ 913 (1135)
|++++|+++. +|.|.++++.. +.+... +. .......++.|+| +++++++... ...|++|++.
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEe
Confidence 9999999997 79999999986 443332 21 1234578999999 8887777643 4579999997
Q ss_pred cce--ee--EEec-CcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCC--CCceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 914 VDE--VK--TKLK-GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID--KWEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 914 ~~~--~~--~~l~-~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
... +. ..+. ........++|+||++++.... .+++|.++++. .+.......+...............++++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 654 21 2222 3445689999999999876554 57789999988 443222222222211111112578899999
Q ss_pred CCcEEEEE--ecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEEC--CCceeeee
Q 001159 986 DQTHLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDA--ETLRFRCR 1055 (1135)
Q Consensus 986 dg~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~--~~~~~~~~ 1055 (1135)
||++|.++ ..+.|.+|++ ....+.............+.++|+|||++|+++. .++.|.+|++ ++|.+...
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 99999996 4678999999 2222222111111134578999999999998876 5668999876 57765543
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.5e-11 Score=138.41 Aligned_cols=239 Identities=11% Similarity=0.024 Sum_probs=156.7
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhh
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1135)
...+|..|...........+...+.+.+|||||++++.+.. .+..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 34566666555555555568889999999999996555442 24689999998876432
Q ss_pred ccCCCcceEEEEEcCCCCeEEEE-eCCCe--EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CC--C
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD--K 477 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d--~ 477 (1135)
+..+.+.+.+.+|||||+.|+.. +.++. |.+||+.++... .+..+........|+|||+. |+..+ .+ .
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~ 314 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSP 314 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCC
Confidence 33455677889999999988654 45554 777788876432 35556666778999999994 44444 33 3
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
.|++||+.++.. ..+..+...+....|+|++ +.|+..+.+ ..|.+||+..... ..+.. ...+..+.|+|||+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC
Confidence 688889766554 4444445566778888865 677766543 3578888755433 33322 23567889999999
Q ss_pred EEEEEecCCCCC--CeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 555 RLFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 555 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.|+..+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 998765422221 4688889876554 34432 22 355566665
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=4.3e-11 Score=119.16 Aligned_cols=262 Identities=11% Similarity=0.172 Sum_probs=177.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecc---cccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI---SAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
..+-|.++.|..+|. +||+|..+|.|.++.-+.... . .+..+.. ..+...... --.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLk--SleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLK--SLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhh--hhhhhhhhhhceecCCCC
Confidence 345799999999998 799999999999997553322 0 1111100 000000000 011346799999999765
Q ss_pred --eEEEEeCCCeEEEEEeCCCCcee--------------------------------eee-EeecccCCEEEEEEecCCC
Q 001159 422 --MLGVAFSKHIVHLYTYNPTGELR--------------------------------QHL-EIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 422 --~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~-~l~~h~~~v~~v~~s~d~~ 466 (1135)
.++..+.|.+|++|.+....... +.. --.+|..-|.++.++.|+.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 56777899999999885422110 000 1236888899999999998
Q ss_pred eEEEEEEcCCCcEEEEEcCCCeeee---eecCC-----CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRKQY---TFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----- 533 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h-----~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----- 533 (1135)
.++++. |=.|-+|+++--..-. .++.+ ..-|++..|||... +.++-.+..|+|++.|++....
T Consensus 178 --t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 178 --TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred --eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchh
Confidence 677765 7789999987432211 22222 34588889999854 7888889999999999984221
Q ss_pred -eeEec----------CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccC-----------Cc
Q 001159 534 -RVDYD----------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRK-----------RS 590 (1135)
Q Consensus 534 -~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~-----------~~ 590 (1135)
..... .--..|..+.|+.+|+++++-. -.+|.+||+. ..+++.++..|.. ..
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 11111 1112678999999999999863 4689999994 5677777766642 12
Q ss_pred e---eEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 591 L---GVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 591 v---~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
| ..++|+.++.++++|+....++++++..|.
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2 347899999999999999999999965543
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=2.8e-10 Score=119.72 Aligned_cols=314 Identities=10% Similarity=0.073 Sum_probs=206.9
Q ss_pred CcceeeecCCCCCCccccC------CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc---------------eEE
Q 001159 314 QSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 372 (1135)
Q Consensus 314 ~~~~v~~s~~g~~~~~~~~------d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg---------------~i~ 372 (1135)
++..+.+||.|.+++.... +......+..+.|. .|..+.|||.++ +|.+=+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 4556888888888776532 33333345555565 699999999998 677765443 488
Q ss_pred EEEcCCccccccCCceeecccccccchhhhhccCCCcc--eE-EEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEe
Q 001159 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI 449 (1135)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l 449 (1135)
+||..+|..+... .+-..+ .. -+.|+-+.+++|-. ....++|+++...-.......+
T Consensus 112 vwd~~sg~iv~sf-------------------~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 112 VWDIASGMIVFSF-------------------NGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred EEeccCceeEeec-------------------cccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc
Confidence 9999988776542 122222 33 57899999988766 3345999997332222222222
Q ss_pred ecccCCEEEEEEecCCCeEEEEE-----EcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE------
Q 001159 450 DAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------ 518 (1135)
Q Consensus 450 ~~h~~~v~~v~~s~d~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s------ 518 (1135)
. ...|....|+|.+..-.|+. .+.++++++|.+..+..+.+-.-....-..+.|++.+ ++++.--
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ks 247 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKS 247 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeec
Confidence 2 35688999999855423442 4678899999998776665433222223345565554 4433221
Q ss_pred -----cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeE
Q 001159 519 -----IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1135)
Q Consensus 519 -----~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1135)
....+.++++......... ...++|...+|.|.++.+++++. -....+.++|++.. +...+... .-..
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rNT 320 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRNT 320 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---cccc
Confidence 2345788888754444443 55779999999999998887753 24667889998855 44333332 3355
Q ss_pred EEecCCCCEEEEEeCC---CeEEEEECCCCceEE-EEeCCCCCCCcceEEEcCCCCEEEEEEC------CCcEEEEEcCC
Q 001159 594 VQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (1135)
Q Consensus 594 i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~ 663 (1135)
+.|+|.+++++.++-| |.+-+||........ .+.+. ...-+.|+||++++.+... |..+.||++..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 7899999999998754 789999988755444 55543 2466789999999887743 78899999865
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 5
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=1.8e-10 Score=114.88 Aligned_cols=193 Identities=14% Similarity=0.272 Sum_probs=124.0
Q ss_pred cCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-----eeeeecCCC------------CCeeEEEeeccCCccEEE
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 515 (1135)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|.+..+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34689999999999 89999999999999743221 122344443 458888999988888999
Q ss_pred EEEcCCeEEEEeCcCCCcee-----EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc
Q 001159 516 STAIDGKIKAWLYDYLGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1135)
....|++|++|.+....... ........++++..- +.+.. +-.+ ...+.+.+...+...
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~~v------ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DLEV------EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----ccee------eeeeeeeccccceeE
Confidence 99999999999887654433 111111222222210 00000 0000 122344554444447
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCCce---EEEEeCCC---CCCCcceEEEcC-CCCEEEEEECCCcEEEEEcCC
Q 001159 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM---LTTVDADG---GLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
|+++.++.|+..++++ .|=.|.+|++.--.. +.-++.+. -...|++..|+| .-++++-.++.|+|++-|++.
T Consensus 167 iNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 9999999999998887 567899999874221 11122111 012478889999 456788888899999999864
Q ss_pred C
Q 001159 664 G 664 (1135)
Q Consensus 664 ~ 664 (1135)
.
T Consensus 246 ~ 246 (433)
T KOG1354|consen 246 S 246 (433)
T ss_pred h
Confidence 4
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.5e-11 Score=121.56 Aligned_cols=250 Identities=10% Similarity=0.137 Sum_probs=183.6
Q ss_pred CCcceEEEEEcCCCC--eEEEEeCCCeEEEEEeCCCCceeee---eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~--~las~~~dg~i~iwd~~~~~~~~~~---~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
....|..++|.-|++ .|...+.+..+....+......... .......++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 446688888887665 4444446666777777665433221 1223455677777765 34 5889999999999
Q ss_pred EEcCCCe----eeeeecCCCCCeeEEEeeccCCccEEEEEEcC--CeEEEEeCcCCCceeEecCC---------CCcEEE
Q 001159 482 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAP---------GNWCTM 546 (1135)
Q Consensus 482 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~---------~~~i~~ 546 (1135)
|....+. .+..+..+ ..+..+.-++... ..+++|+.. ..+.+||++..+.+..-... .-+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 33344333 4455565554432 577779998 88999999987555433222 126788
Q ss_pred EEEcCC--CCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 547 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+.|-+. ...+++++. -+++++||.+.++ ++..|..... +++++...|+++++++|..-|.+..+|++.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999887 788888864 8899999999764 6677776655 8999999999999999999999999999999888
Q ss_pred EE-EeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 624 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 ~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
.. +.+-. +.|.++..+|.++++++++-|..+||+|+.+...+.+
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 77 55543 3799999999999999999999999999999633333
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=9e-11 Score=133.14 Aligned_cols=244 Identities=10% Similarity=0.055 Sum_probs=151.7
Q ss_pred CccccCCCcceeeEEeecCCCCeeEEEEecCCCe--EEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 327 ~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~--lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
..+|..|....+..........+...+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 3455555544544444445667788999999975 333554444 67777888775432
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeC-CC----eEEEEEeCCCC--ceeeeeEeecccCCEEEEEEecCCCeEEEEE-Ec
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFS-KH----IVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CG 474 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~-dg----~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s-~~ 474 (1135)
+....+.....+|||||+.||..+. +| .+.+|++..+. ..+. ...++.......+|+|||+. |+. ..
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~ 300 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSN 300 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEEC
Confidence 2223344567899999999988653 22 34447776532 2221 22223334567899999995 443 34
Q ss_pred CCCcEEEE--EcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 475 DDKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 475 ~d~~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
.++...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++... +......+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~ 377 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPS 377 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceE
Confidence 56655555 4432 33345555555667788898865 677665543 469999998776543 333334567889
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|+|||+.|+..... .+...|+++|+.+++....... .+ .+...+|+|-.
T Consensus 378 wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~-~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIG-SG-EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecC-CC-cccCceecCCC
Confidence 99999998865532 3467899999988776544432 22 45667787643
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2e-09 Score=109.69 Aligned_cols=254 Identities=14% Similarity=0.186 Sum_probs=171.4
Q ss_pred CCceEEEEeecCCCEEEEEe----CCeEEEEECCC--ccEE--EEEeCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001159 841 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKVM--TMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYN 911 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~----dg~i~vwd~~~--~~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd 911 (1135)
...++-++++|++++|.++. +|.|.-|.++. |++. ........+-+.+++++ ++++|+++.. -|.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 67788999999999988885 36788777764 4442 22222333448899999 8999988875 58999999
Q ss_pred ccc-ceeeE--EecCcCCC----------eEEEEEcCCCCeEEEEc--CCCcEEEEeCCCCceeceeeeecCCCCCCCCC
Q 001159 912 VRV-DEVKT--KLKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 976 (1135)
Q Consensus 912 ~~~-~~~~~--~l~~h~~~----------i~~l~~s~d~~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+.. |.+.. .+..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+........... ...
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~-----~G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVK-----PGA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccC-----CCC
Confidence 865 43221 12235554 77889999999999885 454 99999997764443333332 226
Q ss_pred CceEEEECCCCcEEEEE--ecCeEEEEecCC--ceeeccCCC------CCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEE
Q 001159 977 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSPK------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1045 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~------~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vw 1045 (1135)
+..+++|+|++++..+. -+++|.+|..+. ..+..+... -.-.....++.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 77999999999998884 489999999832 333222211 111445678899999999988753 3468888
Q ss_pred ECCCc-eeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC-cEEEEecCCCccccCC
Q 001159 1046 DAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1046 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~v~~W~~~~~~~~~~~ 1109 (1135)
.++.. ..+..+.. ..++...|....+.| +|++|+++++|+ .|.++......+.+..
T Consensus 272 ~V~~~~g~L~~~~~-------~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 272 SVDPDGGKLELVGI-------TPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEcCCCCEEEEEEE-------eccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 87643 11221111 113335577888888 678888888876 6899988766654443
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=4.7e-11 Score=119.02 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.3
Q ss_pred CCceEEEEeecCCCEEEEEe---CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d---g~v~iwd~~~ 914 (1135)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.|+| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999877653 5789999996 66666664 56788999999 89999998754 6799999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcC------CCcEEEEeCCC
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 956 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iwd~~~ 956 (1135)
.+.+.... |. .++.++|||||++++++.. |..++||+...
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88887765 33 4789999999999999874 78899999864
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5.6e-10 Score=126.71 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=141.7
Q ss_pred CCCcceEEEEEcCCCCeEE---EEeCC--CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC----C
Q 001159 406 DAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D 476 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~la---s~~~d--g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d 476 (1135)
.....+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+.+ +++... |
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~d 256 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPD 256 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCcc
Confidence 3455677889999998633 33333 358888888775432 33344456678999999952 333322 3
Q ss_pred CcEEEEEcCCC---eeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeC--cC-CCceeEecCCCCcEEEEEE
Q 001159 477 KMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLY--DY-LGSRVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 477 ~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~--~~-~~~~~~~~~~~~~i~~~~~ 549 (1135)
-.+.+|++..+ .......++.+.....+|+|++ +.|+..+ .+|...+|.+ .. ......+......+....|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 34455777653 3222332333445677888865 6666555 5676566644 32 2234445555556778899
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe---CCCeEEEEECCCCceEEEE
Q 001159 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|||+.|+..+.. ++...|++||+.+++....... .. .+....|+|||+.|+... ....|+++|+..++.....
T Consensus 335 SPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 9999999877642 3456899999998876543332 22 467789999999887643 2457889999887755444
Q ss_pred eCCCCCCCcceEEEcCCC
Q 001159 627 DADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~ 644 (1135)
... ..+...+|+|-.
T Consensus 412 ~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGS---GEKRFPSWGAFP 426 (428)
T ss_pred cCC---CcccCceecCCC
Confidence 322 235667887743
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.2e-10 Score=132.37 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=148.0
Q ss_pred cccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
++..|.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444544444444556778899999999999766655433 368999998875432 122
Q ss_pred CCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~i 481 (1135)
..+.+...+|||||+.|+.. +.+| .|++||+.++... .+..+........|+|||+. ++++...++ .|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 23345578999999988854 4444 6888899886532 34455556777899999995 233333333 5777
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
+|+.+++... +...........|+|++ +.++..+. ++ .|.+||+.+++... +.. ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEE
Confidence 8887776433 22122233456787755 66666554 33 57888988765433 222 122235689999999987
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.+.. .+...|++++.. |...+.+..+.+ .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 335568888875 444444543333 456666765
No 261
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=1.2e-10 Score=116.02 Aligned_cols=164 Identities=18% Similarity=0.317 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCeEEEEeC----------CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 411 VNRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~----------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
-..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999998877433 2346666664432222211222 34579999999999975566677788999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+||++ ++.+..+. ...++.+.|+|.+ ++|++++. .|.|.+||+++.+.+.... ...++.++|+|||++++
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEE
Confidence 99986 66666664 5678899999865 88988874 4679999999666555443 33578999999999999
Q ss_pred EEecC--CCCCCeEEEEECCCCeEEEEe
Q 001159 558 SCGTS--KEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 558 ~~~~~--~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
++... ...+..++||+.. |+.+...
T Consensus 160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEeccceeccccEEEEEec-CeEeEec
Confidence 88642 1236678999974 6655443
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.1e-10 Score=128.99 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=141.8
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--E
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 479 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i 479 (1135)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3466788999999999999887543 358899998865321 2222333457899999995 3344555664 7
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
++||+.+++. ..+..+.......+|+|++ +.++..+ .++. |.++|+.+++.. .+..........+|+|||++|
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEE
Confidence 7888877764 4455565666778898865 5565544 3444 555666655433 233233334457899999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC-CC--eEEEEECCCCceEEEEeCCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..+.. .+...|.++|+.++.... +.... ......|+|||+.|+..+. ++ .+++++.+ +.....+.....
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC--
Confidence 876542 234468888988876533 32221 1224579999998877553 33 47777874 555555654322
Q ss_pred CcceEEEcC
Q 001159 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~~~ 642 (1135)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 456777776
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.2e-10 Score=128.05 Aligned_cols=222 Identities=12% Similarity=0.082 Sum_probs=143.1
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cE
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i 479 (1135)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887643 369999998875432 2233444567899999995 333555454 68
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
++||+.+++. ..+..+........|+|++ +.++..+ .+| .|.++|+.+++... +...........|+|||++|
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889888764 3455566666677888765 5555544 344 46677776655332 22223334467899999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC---CeEEEEECCCCceEEEEeCCCCCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+..... ++...|.+||+.+++........ ......|+|||+.++..+.+ ..++++++.. .....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--C
Confidence 877642 23456999999887653322221 22346899999998876643 3577777754 3333444322 2
Q ss_pred CcceEEEcC
Q 001159 634 ASPRLRFNK 642 (1135)
Q Consensus 634 ~v~~~~~~~ 642 (1135)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667766
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.8e-10 Score=132.01 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=143.7
Q ss_pred ccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCC
Q 001159 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 330 ~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+..|.........+.+...+.+..|||||++++.+...++ .|.+||+.+++... +...
T Consensus 201 ~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~ 260 (448)
T PRK04792 201 MIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSF 260 (448)
T ss_pred EEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCC
Confidence 3333333333334456778999999999997666554443 68888988775422 1111
Q ss_pred CcceEEEEEcCCCCeEEEE-eCCCe--EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--cEEEE
Q 001159 408 AISVNRCVWGPDGLMLGVA-FSKHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVW 482 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~i~iw 482 (1135)
.+.....+|||||+.|+.. +.+|. |++||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRV 335 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEE
Confidence 2234468999999988764 55664 777888876432 34445556778999999995 233443344 56667
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
|+.+++... +..........+|+|++ ++++..+. ++. |.++|+.++.... +... .......|+|||+.|+..
T Consensus 336 dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 336 NLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYS 410 (448)
T ss_pred ECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEE
Confidence 777776433 32222223456787765 56655544 443 5556766654432 2222 122345799999999876
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~ 598 (1135)
.. .++...+++++. +|...+.+..+.+ .+...+|+|
T Consensus 411 ~~-~~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 411 TT-YQGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred Ee-cCCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 64 233456888886 5666666665443 566677776
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=7.9e-09 Score=114.66 Aligned_cols=246 Identities=15% Similarity=0.182 Sum_probs=163.9
Q ss_pred cceEEEEEcCCCCeEEEEeC----CCeEEEEEeCCC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 409 ISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~----dg~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
.....++++|++++|.++.. ++.|..|++... ..+...............++++|+++. ++++...+|+|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEE
Confidence 34667899999999999876 578999999875 444444344334455678999999995 444555699999999
Q ss_pred cCC-Ceeeee---ec----------CCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCcCCCc-e---eEe-cCCCCc
Q 001159 484 VVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS-R---VDY-DAPGNW 543 (1135)
Q Consensus 484 ~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~-~---~~~-~~~~~~ 543 (1135)
+.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... + ..+ ...+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 986 443322 21 123456788888865 6666554 456799999987662 1 122 234557
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECC--CCeE--EEEeecc----cC-CceeEEEecCCCCEEEEEe-CCCeEE
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI--KRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQIK 613 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~----~~-~~v~~i~~s~~~~~l~~~~-~dg~i~ 613 (1135)
...++|+|+++++++... ..+.|.++++. ++.. +..+... .. .....+.++|||++|+++. ..+.|.
T Consensus 194 PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp EEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred CcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 889999999999988763 47788888887 4432 2333221 11 1467799999999988865 667899
Q ss_pred EEECCC--Cc--eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001159 614 FWDMDN--MN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 614 iwd~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 662 (1135)
+|+++. ++ .+..+...+. ....++++|+|++|+++.. ++.|.+|++.
T Consensus 271 vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999942 33 3333333222 4689999999999998874 6789999774
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.9e-09 Score=114.42 Aligned_cols=112 Identities=14% Similarity=0.249 Sum_probs=84.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-----------CCCe
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-----------DEFQ 611 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-----------~dg~ 611 (1135)
.-+-+.|||-|.||++-. ..-|.+|--.+...++.|.. . .|.-+.|||+.++|++-+ +...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~H-p--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYH-P--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccC-C--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 446789999999999986 33489998666666655542 2 588899999999999855 2257
Q ss_pred EEEEECCCCceEEEEeCCCC-CCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 612 IKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++|||+.+|.....+..... ...-.-..||.|++++|.-..+ .|.|++...
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps 335 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS 335 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc
Confidence 99999999998888865322 2234567899999999987774 788887643
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=5.1e-09 Score=112.06 Aligned_cols=240 Identities=11% Similarity=0.044 Sum_probs=151.3
Q ss_pred eecCCCEEEEEe-----------CCeEEEEECCCccEEEEEeCCCC-------CeEEEEEecCCCcEEEEEe-C-CCcEE
Q 001159 849 LSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 908 (1135)
Q Consensus 849 ~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~sp~~~~~lasg~-~-dg~v~ 908 (1135)
+||||+.+.++. ++.|.+||+.+++.+..+.-... ....++++| ||++|++.. . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999877663 36799999999999998874322 235799999 888888765 4 78999
Q ss_pred EEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECC-CC
Q 001159 909 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 987 (1135)
Q Consensus 909 iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg 987 (1135)
+.|+.+++.+.++.-- +...-...+.+. .++- +.||......++..............+.... . ...-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~-v-~~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTANDT-FFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY-L-INHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCCc-cEEE-eecCceEEEEecCCCceEEeeeeeecCCccc-c-ccCCceEcCCC
Confidence 9999999998887642 222222222222 2222 2344444433332221111111111110000 0 00114455 99
Q ss_pred cEEEEEecCeEEEEecCCc------eeeccCCCC----CCCCCEEEEEEeeCCCEEEEEe----------CCCeEEEEEC
Q 001159 988 THLLVVHESQISVYDSKLE------CSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1047 (1135)
Q Consensus 988 ~~l~~~~d~~v~vwd~~~~------~~~~~~~~~----~h~~~i~~~~~s~d~~~l~~~~----------~dg~I~vwd~ 1047 (1135)
+++.++..|.|.+.|+.+. ....+.... -....+.-+++++|+++++++. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 9999987899999996221 111111110 0133344599999999988743 2257999999
Q ss_pred CCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEEecCCCccc
Q 001159 1048 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAELK 1106 (1135)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W~~~~~~~~ 1106 (1135)
.+++.+.++... ..+..+.++| |++ +|.+.. .++.|.+.|+.+++..
T Consensus 287 ~t~kvi~~i~vG-----------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 287 KTGKRLRKIELG-----------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCeEEEEEeCC-----------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 999999987743 3456788999 666 666555 6788999999888743
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1.1e-09 Score=126.77 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=140.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--c
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--M 478 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--~ 478 (1135)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34466678999999999999988654 47999999887533 23345666778999999985 334555444 6
Q ss_pred EEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE
Q 001159 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
|++||+.++.. ..+..+........|+|+ |+.|+..+. ++ .|.++|+.+.+. ..+..+...+..+.|+|+|++
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 88999887754 344445555566788774 467766554 33 577777765543 344445566778899999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC---eEEEEECCCCceEEEEe
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 627 (1135)
++.+..+. +...|.+||+.++... .+.... ......|+|++++|+..+.++ .+++.+.. ++....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeE-EccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 99876422 2447999999876543 232221 234568999999988876543 45555544 44444444
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=6.2e-10 Score=128.71 Aligned_cols=225 Identities=13% Similarity=0.090 Sum_probs=144.5
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
.++..|.........+.+...+...+|||||++++++...+ ..|.+||+.+++... +.
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~ 230 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VA 230 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------ee
Confidence 34444444444444455777899999999999655443322 479999998875432 22
Q ss_pred CCCcceEEEEEcCCCCeEEEE-eCCC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCC--cE
Q 001159 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--MI 479 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~--~i 479 (1135)
.+.+.+.+++|+|||+.|+.. +.++ .|++||+.++... .+..+........|+|||+. |+..+ .++ .|
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~i 304 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQI 304 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceE
Confidence 344567789999999988754 4343 5888898876432 33445555567899999994 44433 333 58
Q ss_pred EEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
.++|+.+++. ..+..+...+..+.|+|++ .+++.++.++ .|.+||+.+.... .+... .......|+|||+.|
T Consensus 305 y~~d~~~~~~-~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l 379 (417)
T TIGR02800 305 YMMDADGGEV-RRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMI 379 (417)
T ss_pred EEEECCCCCE-EEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEE
Confidence 8888777654 3444455667778888754 7788777765 7888988774432 22222 233456899999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+..... ++...+++.+.. +.....+..
T Consensus 380 ~~~~~~-~~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 380 LYATTR-GGRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEeC-CCcEEEEEEECC-CceeeECCC
Confidence 887643 223456666643 444454543
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=9.9e-10 Score=118.44 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=156.1
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe------c------------CCCeEEEEEEcCCCc
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s------~------------d~~~~~l~s~~~d~~ 478 (1135)
.|...++|....||.+++||...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567799999999999999999876544322222234445555553 1 122237889999999
Q ss_pred EEEEEcCCCeeeeeec--CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
|.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+................+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888886 599999999986654 789999999999999999888888888888899999999999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC-----CCEEEE-EeCCCeEEEEECCC
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~-----~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
++++ ++|.+||+++++.+..|.||.. .|+++.|..+ |.++++ ...+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9884 4799999999999999999998 9999999876 677776 34556677887654
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=1.5e-08 Score=108.56 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=168.6
Q ss_pred ccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEe---------ccceEEEEEcCCccccccCCceeecccccccc
Q 001159 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1135)
.++..|..+.+.+.++.-...-..+ +||||+.+.++.+ .+..|.+||..+.+.+.+...
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~----------- 95 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL----------- 95 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc-----------
Confidence 4455677778888888854444455 9999998777777 688999999999987754111
Q ss_pred hhhhhccCCCcceEEEEEcCCCCeEEEEe-C-CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 399 LQNALLNDAAISVNRCVWGPDGLMLGVAF-S-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 399 ~~~~~~~~h~~~V~~v~~spd~~~las~~-~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
+..........-..+++||||++|.+.. . +..|.+.|+.+++.+..... .+...-+..+++ . .+ .-+.|
T Consensus 96 -p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~-~--~~-~~~~D 166 (352)
T TIGR02658 96 -PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAND-T--FF-MHCRD 166 (352)
T ss_pred -CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCC-c--cE-EEeec
Confidence 1000000123345789999999999876 3 68999999999877663321 111111122111 1 11 11223
Q ss_pred CcEEEEEcC-CCeee-e---eecCCCCCeeE-EEeeccCCccEEEEEEcCCeEEEEeCcCCCce-----eEecC------
Q 001159 477 KMIKVWDVV-AGRKQ-Y---TFEGHEAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----VDYDA------ 539 (1135)
Q Consensus 477 ~~i~iwd~~-~~~~~-~---~~~~h~~~v~~-i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~------ 539 (1135)
|......+. +|+.. . .+.+...++.. -.+.+. +|.+++.... |+|.+.|+...+.. ..+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 333322221 12211 0 11110011100 023332 3456655555 99999996543322 11111
Q ss_pred -CCCcEEEEEEcCCCCEEEEEecC------CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEEe-CCC
Q 001159 540 -PGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAG-DEF 610 (1135)
Q Consensus 540 -~~~~i~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~-~dg 610 (1135)
....+.-++++++++.+++.... .++.+.|.++|..+++.+..+.... .+..++++||++ .|++.. .++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCC
Confidence 12234459999999999874311 1234689999999999999888644 688899999999 888765 678
Q ss_pred eEEEEECCCCceEEEEe
Q 001159 611 QIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~ 627 (1135)
.|.+.|..+++.+..+.
T Consensus 323 ~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 323 TLYIFDAETGKELSSVN 339 (352)
T ss_pred cEEEEECcCCeEEeeec
Confidence 89999999999999884
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.3e-09 Score=114.52 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=147.7
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE--------------------cCC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------------------spd 419 (1135)
.++|..+.||.++||+...++...... + ...-.+..++..| +-|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~-------------p---~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFA-------------P---IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeec-------------c---chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 378889999999999999876543210 0 0111223333333 224
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
-..|+-|...|.|.+|++..++.-. ...-..|.+.|.++.++.+-. .|.|++.|+.+..|+...++.++.+.+....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~-~~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITA-KLSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEE-EEecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 4578888899999999999886543 223357999999999998887 8999999999999999999999999999999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC-----CCEEEEEecCCCCCCeEEEEEC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+.+++++|+ |..+++++ +.|++||+++.+....+++|.+.|.++.|.-+ |.++++... ...-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999886 47888876 78999999999999999999999999999877 778776542 2444666654
Q ss_pred C
Q 001159 575 S 575 (1135)
Q Consensus 575 ~ 575 (1135)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=2.5e-09 Score=104.83 Aligned_cols=253 Identities=14% Similarity=0.112 Sum_probs=164.5
Q ss_pred CCCCeeEEEEec---CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 345 QGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 345 h~~~V~~v~~sp---~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
..+.+..+.|.- +|...++-+..+|.|.++.......... ++ ++....+ ....-.++.|++.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~~ki--~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSSKKI--SVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccchhhh--hheeeeEEEeeccCc
Confidence 345677777763 4444566677889999998764433211 00 0000000 111356889999999
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeee-ecCCCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 499 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 499 (1135)
.++++..+|.+.+-+.... .+.....+++|...++...|+..... ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999885554432 23344467899999999999876665 89999999999999998 3444433 4568999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC--EEEEEecCCCCCCeEEEEECCCC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
|.+|.-+|. .+.++++|+.|-.|++||.++......-..-.+.|..+..+|.-. .|++|-. +| .++-+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh----~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMH----NG-AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHh----cC-ceEEEeccc
Confidence 999988776 348999999999999999997766655555568899999998543 3444432 11 444444432
Q ss_pred --e---EEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEE-EEECCC
Q 001159 578 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDN 619 (1135)
Q Consensus 578 --~---~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~-iwd~~~ 619 (1135)
+ .....+.|.. -...-.|......+++++ .|+.++ +|-.-+
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeecc
Confidence 2 2333444444 333344433335677755 555544 664443
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=3.5e-08 Score=111.98 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=118.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.+|.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988776543322222222 336788899999999999998888776554332221122
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce-----eEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
. .+..++.+. .++.|+.||.++|+.+..+..... .+ .+.... +..++.+..+|.+..+|+.+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 378899999999999887765432 11 111122 346778888899999999999877
Q ss_pred EEEeCCCCC--CC---cceEEEcC--CCCEEEEEECCCcEEEEEcCCC
Q 001159 624 TTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~--~~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
......... .. ...+.-+| .+..+++++.+|.+..||..++
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 654321110 00 00011111 3457788888999999999887
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=1.8e-08 Score=114.36 Aligned_cols=306 Identities=11% Similarity=0.042 Sum_probs=182.2
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..++.++.+|.+..+|..+++................. ++..+++++. ++.++.+|..+|+.+........ ..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~-~~ 138 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSSE-VL 138 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCce-ee
Confidence 68888999999999999888877765554432222222 4566776653 78899999999999887664332 11
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC---cceEEEcCCCCEEEEEECCCcEEEEEcCCCchhh
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 668 (1135)
..... .+..++.++.+|.++.||.++++.+........... ..+..+. +..++.+..++.+..+|..++....
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 11122 245777788899999999999998887764322100 0111121 2467788888999999998883222
Q ss_pred hhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccc
Q 001159 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1135)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 748 (1135)
+.-..... +. ...-+
T Consensus 215 ~~~~~~~~--------------------g~---------------------------------------------~~~~~ 229 (377)
T TIGR03300 215 EQRVALPK--------------------GR---------------------------------------------TELER 229 (377)
T ss_pred eeccccCC--------------------CC---------------------------------------------Cchhh
Confidence 10000000 00 00000
Q ss_pred ccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCc
Q 001159 749 SWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 828 (1135)
Q Consensus 749 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1135)
+.+.. ....+ .+..+++++.+|.+..||..+.+ .+|....
T Consensus 230 ~~~~~-----------------------~~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~-- 269 (377)
T TIGR03300 230 LVDVD-----------------------GDPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDA-- 269 (377)
T ss_pred hhccC-----------------------CccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeecc--
Confidence 00000 00111 13346666677778777653221 2333221
Q ss_pred ceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCc
Q 001159 829 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 829 ~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
.. ....+ .++..+.+++ +|.|..+|..+++.+....... ......... +..|++++.+|.
T Consensus 270 ------------~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~ 331 (377)
T TIGR03300 270 ------------SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGY 331 (377)
T ss_pred ------------CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCE
Confidence 00 11111 2455566555 8999999999998876653222 222333332 357888999999
Q ss_pred EEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEE
Q 001159 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 952 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iw 952 (1135)
|+++|..+|+.+..++.+...+.+--...++ .|+.++.||.|..+
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999999999999888666544332222244 57788899988765
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=1.5e-09 Score=108.64 Aligned_cols=212 Identities=15% Similarity=0.244 Sum_probs=139.4
Q ss_pred EeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEE
Q 001159 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1135)
Q Consensus 448 ~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~i 525 (1135)
.++||.+.|++...-|-.. -+++.+.|.+++||--+ .++.-..+. .-..+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5778999999888888776 58999999999999643 343333332 124567777776654 78999999999988
Q ss_pred EeC----cCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE-CCCCeEEEEeecccCCceeEEEecCCC
Q 001159 526 WLY----DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
+.+ +..........|...+..+.|+-...++++++. |..+ .|. .+.+..+..+.-.. .-..+.+.-
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeec--cCCCCceee--
Confidence 854 334445566778889999999999999999874 3333 332 22333222211110 001111111
Q ss_pred CEEEEEeCCCeEEEEECC--CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccc
Q 001159 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (1135)
.+.+.|...|.|.+-.+. .-.++.++.+| ...+.++.|.+....+.+|..|..+.+||+.........+.+|
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 144556566666665543 34566666665 4589999999999999999999999999996653333334443
No 277
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.12 E-value=1.1e-09 Score=105.63 Aligned_cols=169 Identities=18% Similarity=0.249 Sum_probs=122.9
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHH
Q 001159 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIF 73 (1135)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~ 73 (1135)
...+|+.+||+.||-..||.++|+.+.+|+|+..+ -..+|.+|..|+-++|+..+.++.+..-.. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 45789999999999999999999999999999872 457899999999999999999985432122 22489
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCcc---chhhhccCCCchhHHHHHHHHHHhh
Q 001159 74 FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR---QNEQLSKYGDTKSARNIMLVELKKL 150 (1135)
Q Consensus 74 ~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~r~~l~~~l~~~ 150 (1135)
|.+.+|+++|++..+...+|+.|+|.++.|+...+++.++.|...|..--++ ......-| ....|.++...+.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL--SQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999777777777776654432121 11111100 234477777777766
Q ss_pred cccCcccccccCCCCCchHHHHHHHHHHHHHH
Q 001159 151 IEANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1135)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q 182 (1135)
|-...- . --..+|..||+..+..|
T Consensus 181 iL~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhc---c-----cccchHHHHHHHHHHHH
Confidence 543211 0 01347888885555444
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=8.1e-08 Score=120.35 Aligned_cols=258 Identities=12% Similarity=0.139 Sum_probs=162.2
Q ss_pred eEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC--C------------CCCeEEEEEecCCCcEEEEEe-CCCc
Q 001159 844 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIGM-EDSS 906 (1135)
Q Consensus 844 i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~--h------------~~~v~~l~~sp~~~~~lasg~-~dg~ 906 (1135)
...+++++++..+.++. ++.|++||... ..+..+.+ . -.....+++++ +++.|+++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 35688988655444444 68899999864 44444432 1 12357899998 666555554 4578
Q ss_pred EEEEEcccceeeEEecCc-----------------CCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceecee---ee
Q 001159 907 VQIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSR---FI 965 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h-----------------~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~~~---~~ 965 (1135)
|+++|..++. +.++.+- -...++|+|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987765 3333210 12346899999 5677788888899999999876532100 00
Q ss_pred ecCCCCC---CCCCCceEEEECCCCcEEEE--EecCeEEEEec-CCceeecc-----------CCC--C-----CCCCCE
Q 001159 966 QAPAGRQ---SPLVGETKVQFHNDQTHLLV--VHESQISVYDS-KLECSRSW-----------SPK--D-----ALPAPI 1021 (1135)
Q Consensus 966 ~~~~~~~---~~~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~-~~~~~~~~-----------~~~--~-----~h~~~i 1021 (1135)
....+.. ........++|+|+|++|++ +.++.|++||+ ++...... ... . ......
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0011111 01134578999999986665 46789999998 33321100 000 0 001123
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee-cccc--ccCCCCccEEEEecCCCCCEEEEEecCCcEEEE
Q 001159 1022 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY-IPTY--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1098 (1135)
Q Consensus 1022 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W 1098 (1135)
..++++++|.++++-+.++.|++||..++........... ...+ ....-..+..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 5899999999888889999999999998766533221100 0000 011113567888888 67899999999999999
Q ss_pred ecCCCcc
Q 001159 1099 EPSDAEL 1105 (1135)
Q Consensus 1099 ~~~~~~~ 1105 (1135)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988763
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=8.5e-10 Score=120.60 Aligned_cols=285 Identities=15% Similarity=0.219 Sum_probs=194.9
Q ss_pred ccCCcceeeecCCCCCCccccCCC-------cceeeEEeecC--CCCeeEEEEecCCC-eEEEEEeccceEEEEEcCCcc
Q 001159 311 RTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQ--GSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRE 380 (1135)
Q Consensus 311 ~~~~~~~v~~s~~g~~~~~~~~d~-------~~~~~~~~~~h--~~~V~~v~~sp~g~-~lla~g~~dg~i~iwd~~~~~ 380 (1135)
..+++..+..+|-|+.+++.+..+ .++.+-+-+.| .-.|-.+.|||... -+-++......-.||++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 345788899999999988876543 46666666765 34688889987542 134455556677889886433
Q ss_pred ccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEE
Q 001159 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1135)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v 459 (1135)
.-+ ..-++.||...|+.+-|.|. -..||+++.|..+..||+.+... .......-......|
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQV 164 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCcee
Confidence 211 11136789999999999995 45899999999999999998653 223333444556789
Q ss_pred EEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-
Q 001159 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY- 537 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~- 537 (1135)
+|+.... .+...+..+.|.+||++.| ..+..+++|...|+.+.|..... ..+.+.+.||+|+.||.+........
T Consensus 165 kwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 165 KWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccccccee
Confidence 9987666 4556667789999999865 56788999999999998875433 57889999999999999876544322
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE---------EECCC-CeEEEEeecccCCceeEEEecCC--------
Q 001159 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTT-------- 599 (1135)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~i~~s~~-------- 599 (1135)
.....+|..-.+.|-|.-.+.--. .|+..+.+ |+..+ .+.+..|.||.+ .|....|-..
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCC
Confidence 223446666667675543222111 11223333 33333 457899999987 4443333221
Q ss_pred --CCEEEEEeCCCeEEEEECCC
Q 001159 600 --RNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 600 --~~~l~~~~~dg~i~iwd~~~ 619 (1135)
.-.|++-+.|..+++|-+.+
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 23689999999999998864
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=1.2e-09 Score=115.06 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=172.6
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-ce---eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~---~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~ 478 (1135)
.+.||...|..++--.+.+-+++++.|.+|++|.++... .+ .+..+++.|+.+|.++.|..+.+ +++++ |+-
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 478999999999988888999999999999999997532 12 24457889999999999999987 56655 789
Q ss_pred EEEEEcCCCeeeeeecC--CCCCeeEEEeeccCCccEEEEE-EcCCeEEEEeCcCCCceeEe-----cCCCCcEEEEEEc
Q 001159 479 IKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYS 550 (1135)
Q Consensus 479 i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s 550 (1135)
|++||.--|+.+..+.. ..+.+..+...++-+...++.| +...+++++|.+..+....+ .+++..+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99999988887764421 2223333333344343555555 78899999999887655443 3345678999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEE-EECCCCceEEEEeCC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDAD 629 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~ 629 (1135)
+.|++++++-. +|.|.+.|.++|+.+..++...- ....++ .|..+.++....|.++.+ |...++......+..
T Consensus 886 ~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 99999998865 88999999999998877664322 222222 344566777777888888 988777665555433
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
... . --...-|.-++++...+.+.+|.
T Consensus 960 pep--a--hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 960 PEP--A--HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred Ccc--h--hhhhccCceeEEeccCcEEEEEe
Confidence 211 0 01112366778887777888875
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2.9e-07 Score=115.40 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=59.6
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-------------CcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------------GHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
...+++++ +|.++++-+.++.|++||..++....... +.-....+|+++++|+++++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 35889999 78888888889999999998876543221 12235789999999999999999999999
Q ss_pred EeCCCCce
Q 001159 952 WSIDKWEK 959 (1135)
Q Consensus 952 wd~~~~~~ 959 (1135)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=3.5e-08 Score=96.96 Aligned_cols=247 Identities=13% Similarity=0.078 Sum_probs=159.1
Q ss_pred CCcceEEEEEcC---CCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccC---CEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 407 AAISVNRCVWGP---DGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 407 h~~~V~~v~~sp---d~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
....+..+.|+. +|. .|+-+..+|.|.++.............+..-.- ...++.|++.+. -++++..+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcE
Confidence 455677788864 555 667778899999998775433221112221111 235778898888 68888889999
Q ss_pred EEEEcCCCeee--eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC-ceeE-ecCCCCcEEEEEEcC-CCC
Q 001159 480 KVWDVVAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVD-YDAPGNWCTMMAYSA-DGT 554 (1135)
Q Consensus 480 ~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~-~~~~~~~i~~~~~s~-~~~ 554 (1135)
.+-+....... ++++.|+.+.+...|+.... +.+++|+.|+.+..||++..+ .+.. ...|...|.++.-+| .+.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 86665555444 37899999999999986654 899999999999999999444 2322 455777888888776 467
Q ss_pred EEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCCceE-----EEEe
Q 001159 555 RLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNML-----TTVD 627 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~-----~~~~ 627 (1135)
++++|+. |..|++||.+ -++++..-. -++.|..+..+|.-. .++.++.-.-.+|-+...+... ...+
T Consensus 225 ~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 225 YIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eEEEecc----ccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 8888876 6789999998 456554333 334789999988543 2233333333566665543221 2222
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEEC-CCcEE-EEEcCCC
Q 001159 628 ADGGLPASPRLRFNKEGSLLAVTTS-DNGIK-ILANSDG 664 (1135)
Q Consensus 628 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~-iwd~~~~ 664 (1135)
.|.. -++.-.|......+++++. |+.++ +|-..++
T Consensus 299 ~hdS--l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDS--LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccc--eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2221 3344444333356777653 66644 7765554
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.5e-07 Score=106.11 Aligned_cols=217 Identities=12% Similarity=0.028 Sum_probs=131.7
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEec---cceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
...++..|.........+... .+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 344455444444333333343 78899999999864443332 3579999998876532
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC--
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~-- 477 (1135)
+....+.+...+|||||+.|+.... +..|.++|+.++.. + .+..+........|+|||+.+++.+. ..+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCc
Confidence 2224455667889999998876532 35688888877643 2 23334433445689999996444432 233
Q ss_pred cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC---------CeEEEEeCcCCCceeEecCCCCcEEEEE
Q 001159 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~ 548 (1135)
.|.+.|+.+++..+.... ... ...|+|++ +.++..+.. ..|.+.|++++... .+... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeE
Confidence 688888887776433221 111 23777755 666655543 36777788766543 33332 2333588
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999998877643 2344577777653
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=2.4e-09 Score=128.39 Aligned_cols=198 Identities=18% Similarity=0.301 Sum_probs=157.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+-..|.++.=+|... +.+||+.||.|++|....++.+.. |+. .|. ..|+.+.|+.+|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~rt------------~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FRT------------AGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----eec------------cCc-chhhhhhhcccCCcee
Confidence 457889999999998 567899999999999988876542 221 233 7899999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc---CCCcEEEEEcCCC---eeeeeecCCCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAG---RKQYTFEGHEA 498 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~---~~~~~~~~h~~ 498 (1135)
.+..||.+.+|.+.. +.....+.|.....++.|-. . .+++++ +++.+.+||..-. .+++ ..|.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence 999999999999983 34446778999999999986 3 567664 5789999996532 2333 78999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.++++++.|.. +.+++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.|+||++....
T Consensus 2338 gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2338 GATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFG 2401 (2439)
T ss_pred CceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccc
Confidence 99999999977 8999999999999999998777665553 33 4557777764 8889999999888
Q ss_pred EEEEeeccc
Q 001159 579 IKRTYSGFR 587 (1135)
Q Consensus 579 ~~~~~~~~~ 587 (1135)
.+.++...+
T Consensus 2402 ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2402 LLHTFPSEH 2410 (2439)
T ss_pred hhhcCchhh
Confidence 887776543
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=128.10 Aligned_cols=200 Identities=14% Similarity=0.227 Sum_probs=162.8
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
..+-..|.++.=+|...+.++|+.||.|++|....+..+....+. | ...|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567889999999999999999999999999998877655442 3 38899999999999 7888888999999996
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE---cCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
. .+.....+.|........|-. ..+++++ .++.+.+||.-.... -...+.|.+.++++++.|..+.+++||
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 666777888998888888765 3466653 578899998754433 234488999999999999999999998
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
. +|.|++||++..++++.+.. +. ...++++|+..|.++||++.....+.++..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 5 88999999998887776654 33 467899999999999999998877777654
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.2e-09 Score=115.10 Aligned_cols=219 Identities=16% Similarity=0.235 Sum_probs=155.9
Q ss_pred EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC
Q 001159 875 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 947 (1135)
Q Consensus 875 ~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~ 947 (1135)
+..+.+|...|..++--. +.+-+++++.|++|++|.+.. ..+..+++.|..+|.++.|-.|-++++++ |+
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999886654 567788999999999999863 34667788999999999999998888876 88
Q ss_pred cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC-CcEEE-E--EecCeEEEEec-CCceeeccCC--CCCCCCC
Q 001159 948 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLL-V--VHESQISVYDS-KLECSRSWSP--KDALPAP 1020 (1135)
Q Consensus 948 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~-~--~~d~~v~vwd~-~~~~~~~~~~--~~~h~~~ 1020 (1135)
.|.+||.--+..+.+..-.... ..+..+..-+. .+.++ + +...+|+++|. ..+....+.. ..+-.+.
T Consensus 805 giHlWDPFigr~Laq~~dapk~------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKE------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhHhhhcCccc------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 8999998877654432111111 12222322222 33333 3 35789999998 4444433322 2233567
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEE-Ee
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV-VE 1099 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~-W~ 1099 (1135)
+.+++..+.|++++++-.+|+|.+.|.++|+.+..+++..-- . +-++ -|.| +.|+....|.++.+ |-
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--------l--lqla-apsd-q~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--------L--LQLA-APSD-QALAQSALDHSLAVNWH 946 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch--------h--hhhc-Cchh-HHHHhhcccceeEeeeh
Confidence 899999999999999999999999999999999877654210 1 1111 2323 68888889999999 99
Q ss_pred cCCCccccCCCCCCC
Q 001159 1100 PSDAELKWGGTPSQD 1114 (1135)
Q Consensus 1100 ~~~~~~~~~~~~~~~ 1114 (1135)
..++-..++..||.+
T Consensus 947 aldgimh~q~kpppe 961 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPE 961 (1034)
T ss_pred hcCCeeeeccCCCCc
Confidence 988888887766654
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=2e-08 Score=110.20 Aligned_cols=304 Identities=11% Similarity=0.188 Sum_probs=194.6
Q ss_pred CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 333 d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+..+...-.+++-.+++.++.++|.|+. +|.++.-| +.+-|+...-.... | +-.-..-.|.
T Consensus 11 ns~tf~kslsl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-----~------------l~h~tpw~va 71 (1081)
T KOG0309|consen 11 NSPTFGKSLSLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-----W------------LHHITPWQVA 71 (1081)
T ss_pred CCCccCceeEEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-----e------------eeccCcchhc
Confidence 3333334445566779999999999986 55666554 44456553221100 0 0001122467
Q ss_pred EEEEcCCCC--eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-e
Q 001159 413 RCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-K 489 (1135)
Q Consensus 413 ~v~~spd~~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~ 489 (1135)
.+.|||... +-++........+|++.....-.....+.+|...|+.+.|.|.... .+++++.|..+..||+++.. .
T Consensus 72 d~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 72 DVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred ceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcc
Confidence 788887543 4444445556778998766554555578899999999999998776 89999999999999998754 4
Q ss_pred eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-eEecCCCCcEEEEEEcCCC-CEEEEEecCCCCCC
Q 001159 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGES 567 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~ 567 (1135)
+..+..-...-..++|+... ..+.+.+..+.|++||.+.+... ..++.+...|..+.|..-- ..+.+++ .|+
T Consensus 151 ~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~ 224 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDG 224 (1081)
T ss_pred eeeeecccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCC
Confidence 55555555667788887654 34555667788999999987654 4677777788888886532 2344543 489
Q ss_pred eEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE--eCCCeEEE---------EECCC-CceEEEEeCCCCCCCc
Q 001159 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKF---------WDMDN-MNMLTTVDADGGLPAS 635 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~v 635 (1135)
+|+.||..............+.+|..-++.|-|+-.+.- -.+..+.+ |+..+ .+++.++.+|.. .|
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V 302 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VV 302 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HH
Confidence 999999875543333333333355555666655433321 11223333 44333 457778887754 45
Q ss_pred ceEEEcCC----------CCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKE----------GSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
....|-.. .-.|++=+.|.++++|-+.+.
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 44444322 237899999999999988653
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.2e-06 Score=98.76 Aligned_cols=197 Identities=11% Similarity=0.107 Sum_probs=126.3
Q ss_pred CEEEEEEecCCCeEEEE-EEc-CCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC--CeEEEEeCcC
Q 001159 455 GVNDIAFAHPNKQLCIV-TCG-DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDY 530 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~-s~~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--g~i~iwd~~~ 530 (1135)
.+....|+|||+.+.++ +-. .+..|.++|+.+++..... ...+......|+|++. ..+++.+.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~-~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS-KLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC-EEEEEEccCCCcEEEEEECCC
Confidence 77889999999852222 232 2467999999888754433 3455566778888653 344455444 4577778766
Q ss_pred CCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-
Q 001159 531 LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE- 609 (1135)
Q Consensus 531 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d- 609 (1135)
+.. ..+...........|+|||+.|+..+. ..+...|+++|+.+++..+...... ....|+|||+.++..+..
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCC
Confidence 553 334433333445689999999987763 3345589999998887644333211 124899999998876543
Q ss_pred --------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC---cEEEEEcCC
Q 001159 610 --------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSD 663 (1135)
Q Consensus 610 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 663 (1135)
..|.+.|+.++.. ..+.... ......|+|||+.|+..+.++ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889888764 3343321 234688999999888776532 244555543
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=1.1e-06 Score=87.23 Aligned_cols=237 Identities=14% Similarity=0.146 Sum_probs=138.4
Q ss_pred EEeecCCCEEEEEeCCeEEEEECCCc--cEEEEEe---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 847 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMFM---SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
++.+.||++||+..|..|.|-..++. ..+.+.. .....=.-++||| |+.+||.+...|+|++||+....+. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 67889999999999999988877652 2223322 2333467899999 9999999999999999999854432 33
Q ss_pred cC-------cCCCeEEEEEcCCC------CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 922 KG-------HQNRITGLAFSPTL------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 922 ~~-------h~~~i~~l~~s~d~------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.. -...|.+|.|.+-. ..|+...-+|.++=+-+..+....-..............+|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 13467778775432 245556667777766654321111111111111111226899999999999
Q ss_pred EEEEEe--cCeEEEEecCCceeeccCCCCCCCCCEEEEEEe---eCCCEEEEEeCCCe------EEEEECCCceeeeeeC
Q 001159 989 HLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGA------IGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 989 ~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s---~d~~~l~~~~~dg~------I~vwd~~~~~~~~~~~ 1057 (1135)
+|++++ ...-..+... ...+++-..- |..+. ++...|+. -.+|.+-+.+...+..
T Consensus 161 LLlVgG~~~~~~~~s~a~-------------~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKAS-------------SCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred EEEEeccCCCCCcccccc-------------ccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeeccc
Confidence 998843 1110001000 1122222221 22221 22222222 2445555544433211
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc--cccCCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE--LKWGGT 1110 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~--~~~~~~ 1110 (1135)
........+..+| ||..||+...+|+|.+|++..-. +.|...
T Consensus 227 ----------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 227 ----------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ----------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1124455777788 88999999999999999998743 666543
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=3.1e-06 Score=87.25 Aligned_cols=209 Identities=17% Similarity=0.164 Sum_probs=146.5
Q ss_pred EEEEeec-CCCEEEEEe-CC-eEEEEECCCccEEEEEeCCCCCe--EEEEEecCCCcEEEEEeC-----CCcEEEEEcc-
Q 001159 845 ACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR- 913 (1135)
Q Consensus 845 ~~l~~s~-dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~lasg~~-----dg~v~iwd~~- 913 (1135)
-.++.+| +...++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 3688899 666777776 44 58999999999988876544442 3578999 8999988643 4789999999
Q ss_pred cceeeEEecCcCCCeEEEEEcCCCCeEEEEc------------------CCCcEEEEeCCCCceeceeeeecCCCCCCCC
Q 001159 914 VDEVKTKLKGHQNRITGLAFSPTLNALVSSG------------------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 975 (1135)
Q Consensus 914 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~------------------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
+.+.+.++..|.-..-.|.+.|||+.|+.+- .+..+.+-|..+++.+....+.... |.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~-~~--- 162 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL-HQ--- 162 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc-cc---
Confidence 7788899988877778899999998777652 1235666777777765543332111 11
Q ss_pred CCceEEEECCCCcEEEEEe-cC-------eEEEEecCCceeeccCCC----CCCCCCEEEEEEeeCCCEEEEEe-CCCeE
Q 001159 976 VGETKVQFHNDQTHLLVVH-ES-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYAGF-CDGAI 1042 (1135)
Q Consensus 976 ~~v~~~~~s~dg~~l~~~~-d~-------~v~vwd~~~~~~~~~~~~----~~h~~~i~~~~~s~d~~~l~~~~-~dg~I 1042 (1135)
..+.++++.++|..++... .+ -|-+++. +..+..+... .....-|-+|++++++.++++++ .-+++
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 5789999999998877742 11 1344444 1112222211 12256789999999998876554 56789
Q ss_pred EEEECCCceeeeeeCCc
Q 001159 1043 GVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1043 ~vwd~~~~~~~~~~~~~ 1059 (1135)
.+||..+|+++......
T Consensus 242 ~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLP 258 (305)
T ss_pred EEEECCCCCEeeccccC
Confidence 99999999999776643
No 291
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=9.3e-07 Score=98.80 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=133.4
Q ss_pred EEEEEcCCCCeEEEEeC----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 412 NRCVWGPDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
+-.+|+|...++|+++- .|.|.||-- +|+.-+.. +..- .+++++|.|..- .|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34679999999998863 577888743 33322211 2222 356799999876 8889989999999997776
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCC--C--cEEEEEEcCCCCEE-----
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APG--N--WCTMMAYSADGTRL----- 556 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~--~--~i~~~~~s~~~~~l----- 556 (1135)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|.++..+...... .|. . ...|...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6555556799999999998865 899999999999999887544433221 111 1 33455566764321
Q ss_pred -EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 557 -FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 557 -~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
++.+ +...-....-|..++.. +.. .+ .-.|+|..++.++.+|+|+--|- .++..........
T Consensus 170 aaVtg-De~alD~~fnwk~~~a~--rs~-~k--------sgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~---- 232 (1416)
T KOG3617|consen 170 AAVTG-DESALDEPFNWKESLAE--RSD-EK--------SGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE---- 232 (1416)
T ss_pred hhccC-chhhhcccccCccchhh--ccc-cc--------cCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch----
Confidence 2222 11111112222211111 110 01 12577888999999999987774 3555555554322
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEE
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
..+-|.+.-..+++...+-++.++
T Consensus 233 vQmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHHHhcccceEEEEeeeceeeEE
Confidence 335566544444444444444443
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-07 Score=92.88 Aligned_cols=256 Identities=14% Similarity=0.200 Sum_probs=166.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccC---Cceeecccccccchhhhhcc--CCCcceEEEEEcCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK---PFKVWDISAASMPLQNALLN--DAAISVNRCVWGPD 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~spd 419 (1135)
..+-|++|.|...|. +||+|...|.|.+|.-+....-..+ .|+.++++ ...++ .-...|..+.|..+
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecC
Confidence 346799999999997 7999999999999986643311000 11111100 00011 12356889999876
Q ss_pred CC--eEEEEeCCCeEEEEEeCCC------------------C-c------e--------------eeeeEe-ecccCCEE
Q 001159 420 GL--MLGVAFSKHIVHLYTYNPT------------------G-E------L--------------RQHLEI-DAHVGGVN 457 (1135)
Q Consensus 420 ~~--~las~~~dg~i~iwd~~~~------------------~-~------~--------------~~~~~l-~~h~~~v~ 457 (1135)
+. .++..+.|.+|++|.+... + . + .+.... ..|..-|.
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 54 5667789999999987532 0 0 0 001111 46777889
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCee---eeeecCCC-----CCeeEEEeeccCCccEEEEEEcCCeEEEEeCc
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~ 529 (1135)
++.|..|.+ .++++. |=.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++
T Consensus 177 SiS~NsD~e--t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 177 SISFNSDKE--TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeecCchh--eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhh
Confidence 999999888 566654 77899999864322 22233343 4578888998754 677778889999999998
Q ss_pred CCC-----c-ee--Eec--------CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-eEEEEeecccC----
Q 001159 530 YLG-----S-RV--DYD--------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK---- 588 (1135)
Q Consensus 530 ~~~-----~-~~--~~~--------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~---- 588 (1135)
... + .. .+. .-...|..+.|+++|+++++-. -.++.+||.+.. .++.++.-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHH
Confidence 321 1 11 111 1123688899999999999864 567999999854 46666654432
Q ss_pred -------Cce---eEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 589 -------RSL---GVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 589 -------~~v---~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
..| ..+.|+.|.+.+++|+.....-+|-.
T Consensus 328 l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 23678888888888887766666653
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=3.2e-06 Score=96.21 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=115.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCC--Cee-----EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 541 (1135)
.++.++.++.+.-+|..+|+.+.+...... ... .+.-.|.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 567777888999999999998876542210 000 0000111123577888899999999999998887665543
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce-----eEEEecCCCCEEEEEeCCCeEEEEE
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~i~~s~~~~~l~~~~~dg~i~iwd 616 (1135)
....+.... + ..++.+. .++.++.+|..+|+.+..+..... .+ .+... .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222221 3 3455543 377899999999999988765321 11 11111 134577788899999999
Q ss_pred CCCCceEEEEeCCCCC--CC---cceEEEcC--CCCEEEEEECCCcEEEEEcCCCc
Q 001159 617 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~--~~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
..+|+.+......... .. ...+.-+| .+..+++++.+|.+..+|..++.
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 9999877665322110 00 01111222 24567777788999999988873
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=3.8e-08 Score=101.43 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=114.2
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.+..+..+|.++ ++|++..+....++++....+ ..+.++.. .+......+..+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecccCcceeeeeeccceEEEEeecC
Confidence 556677788887 788888888877777765443 11111110 0111222333333333333333344
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee-cCCCCCeeEEEee
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~ 506 (1135)
....+.+|....+.+. .+-||-..++.++|+||++ +|+++..|..|+|-....-..+..| -||..-|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556667776654332 3458999999999999998 8999999999999877655555544 4799999999986
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 538 (1135)
++ ..|+++|.|+++++||+.+++....+.
T Consensus 204 ~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 DN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 54 579999999999999999988775443
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=3.6e-06 Score=95.78 Aligned_cols=143 Identities=10% Similarity=0.035 Sum_probs=91.0
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC----------cEE-EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----------WCT-MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~i~-~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.+|.+..+|..+++.+........ .+. .+.. ++..++.++. ++.++.+|..+|+.+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~----~g~l~ald~~tG~~~ 143 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSE----KGQVYALNAEDGEVA 143 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcC----CCEEEEEECCCCCCc
Confidence 5777777888888888888777665543321 000 0111 3445665543 778999999999998
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC---cceEEEcCCCCEEEEEECCCcEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA---SPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.+...... ...+.... +..++.+..++.++.+|..+|+.+........... ..+... .+..++.++.+|.+.
T Consensus 144 W~~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 144 WQTKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVS 218 (394)
T ss_pred ccccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEE
Confidence 87765432 11112222 45677788899999999999999888764321000 011111 133577788889999
Q ss_pred EEEcCCCc
Q 001159 658 ILANSDGV 665 (1135)
Q Consensus 658 iwd~~~~~ 665 (1135)
.+|..++.
T Consensus 219 a~d~~~G~ 226 (394)
T PRK11138 219 AVLMEQGQ 226 (394)
T ss_pred EEEccCCh
Confidence 99998884
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=9.1e-07 Score=98.88 Aligned_cols=111 Identities=13% Similarity=0.369 Sum_probs=84.7
Q ss_pred CeeEEEEecCCCeEEEEEe----ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.-+-..|+|..+ ++|+++ ..|.|.||- ++|++-...++ .-.+++++|+|..-.|
T Consensus 17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~vL 74 (1416)
T KOG3617|consen 17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFVL 74 (1416)
T ss_pred cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHHH
Confidence 445567999998 677775 457888885 45554332111 1225679999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|.|-.-|.+.+|...+.+.-. ....|+.+|..+.||++|. .++|+..-|.|.+|...
T Consensus 75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999988754322 3346999999999999999 89999999999999865
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.2e-06 Score=85.05 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=153.3
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
-.+|+.|+..|...+|...+.....+....+...+.-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~------------------------------------------ 121 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV------------------------------------------ 121 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhh------------------------------------------
Confidence 34889999999999999987644444333333222110
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
...........++..|.++++.+++............+ .+ .++++++|++++++.+....|..|.++
T Consensus 122 -----~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-------~~-ns~~~snd~~~~~~Vgds~~Vf~y~id 188 (344)
T KOG4532|consen 122 -----KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-------TQ-NSLHYSNDPSWGSSVGDSRRVFRYAID 188 (344)
T ss_pred -----hhhcccccceeeccCCcceeEEEEecCcccceeecccc-------ce-eeeEEcCCCceEEEecCCCcceEEEeC
Confidence 01111223456677778888888876444333322111 13 889999999999999998889998775
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE-----
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM----- 877 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~----- 877 (1135)
.... .+....... - ...-.+..|+.....+|++. ||++.|||+........
T Consensus 189 ~~se--------------------y~~~~~~a~--t-~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 189 DESE--------------------YIENIYEAP--T-SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred Cccc--------------------eeeeeEecc--c-CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 4221 111111111 1 44556788999999999999 99999999986543222
Q ss_pred EeCCCCCeEEEEEecCCC--cEEEEEeCCCcEEEEEcccceeeEEec-------CcCC-CeEEEEEcCCCCeEEEEcCCC
Q 001159 878 FMSPPPAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQN-RITGLAFSPTLNALVSSGADA 947 (1135)
Q Consensus 878 ~~~h~~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~-~i~~l~~s~d~~~l~s~~~D~ 947 (1135)
-..|.+++..+.|++ .| .+|...-.-+.+.+-|+.+++..+.+. .|.. .|..-.|+.++....+...+.
T Consensus 246 rp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 246 RPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred CCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 234889999999997 44 355555556789999999886554432 3333 388888988887777666554
Q ss_pred cEEEEeCCCCc
Q 001159 948 QLCMWSIDKWE 958 (1135)
Q Consensus 948 ~i~iwd~~~~~ 958 (1135)
+.-|++.+..
T Consensus 325 -~ae~ni~srs 334 (344)
T KOG4532|consen 325 -GAEYNILSRS 334 (344)
T ss_pred -hheeeccccc
Confidence 6677777644
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.74 E-value=1.3e-05 Score=79.98 Aligned_cols=240 Identities=9% Similarity=0.120 Sum_probs=138.1
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCC--ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
.++.+.||++||+. .|..|.|=..+.+- .+......+.-.-.-..++||||+. +||.+...|+|+++|+.. ..+
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g-~~l 77 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMG-SEL 77 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEeccc-cee
Confidence 36778899999887 55567666555431 1121111112222467899999999 899999999999999764 444
Q ss_pred eeecC-------CCCCeeEEEeeccCC----ccEEEEEEcCCeEEEEeCcCC-----CceeEec--C-CCCcEEEEEEcC
Q 001159 491 YTFEG-------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYL-----GSRVDYD--A-PGNWCTMMAYSA 551 (1135)
Q Consensus 491 ~~~~~-------h~~~v~~i~~~~~~~----~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~--~-~~~~i~~~~~s~ 551 (1135)
..+.. -...|..+.|..... ...|+.-..+|.++-|-+..+ +....+. . ....|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 44432 124566666654321 125677778888887776432 1222222 2 356899999999
Q ss_pred CCCEEEEEecCCCCCCe-------EEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 552 DGTRLFSCGTSKEGESH-------LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~-------i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
.-+.|+++|.....++. +..|.+-++.+ -.....+.+...-.... +-.+|.+-+.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~~~~~~---~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDITASSK---RRGLLRIPSFKFFS 223 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCC-----------cEEEccccCcccccccc---ccceeeccceeeee
Confidence 99999988753322211 22222211111 00000111111111111 12234333322222
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccc
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
.. ......|..+..||||+.||+...+|.|.+|++.+- ...+.+..
T Consensus 224 ~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL-~~~~~W~~ 269 (282)
T PF15492_consen 224 RQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL-RLQRSWKQ 269 (282)
T ss_pred cc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc-hhhcccch
Confidence 11 123457899999999999999999999999999876 44444443
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=2.7e-07 Score=91.13 Aligned_cols=247 Identities=15% Similarity=0.253 Sum_probs=165.4
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC--ceeeeeEeeccc------------CCEEEEEEecCCCeEEEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~v~~v~~s~d~~~~~l~s 472 (1135)
....|++|.|...|.|||+|...|.|.++.-.... ..+-..++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999865432 122223455664 3578899988776556777
Q ss_pred EcCCCcEEEEEcCCCe-------------------ee-----------------------eee-cCCCCCeeEEEeeccC
Q 001159 473 CGDDKMIKVWDVVAGR-------------------KQ-----------------------YTF-EGHEAPVYSVCPHHKE 509 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~i~~~~~~ 509 (1135)
.+.|++|++|.+.... .+ +.. ..|...|+++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875431 00 001 2466677888876543
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCcee---EecCCC-----CcEEEEEEcCCCCEEE-EEecCCCCCCeEEEEECCCCeEE
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPG-----NWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~-----~~i~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++ .+.|=.|.+|+++....-. .+..|. ..|++..|+|....++ ..+ ..|.|++-|++...+.
T Consensus 185 --et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs----SkG~Ikl~DlRq~alc 257 (460)
T COG5170 185 --ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS----SKGEIKLNDLRQSALC 257 (460)
T ss_pred --heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec----CCCcEEehhhhhhhhc
Confidence 4444 4567889999887654332 233332 2578888999654333 322 2788999999843221
Q ss_pred ----EE------------eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCC----------CC
Q 001159 581 ----RT------------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGG----------LP 633 (1135)
Q Consensus 581 ----~~------------~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~ 633 (1135)
.. +.+.. ..|..+.|+++|+++++-+. -+|++||++. ..++.++..|.. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhcc
Confidence 11 11111 25777899999999888754 5899999986 457777754421 11
Q ss_pred Cc---ceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 634 AS---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 634 ~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.| ..+.|+.|.+.+++|+..+...++-..
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeeeccc
Confidence 12 357889999999999999888888643
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=9.5e-09 Score=114.71 Aligned_cols=215 Identities=13% Similarity=0.213 Sum_probs=157.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC-cEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~-~i~iw 482 (1135)
+..|....+|++||-+.+.|++|+..|.|+++++.+|.... ..++|..+|+.+.=+.||.. .|.+.+... -..+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67789999999999999999999999999999999997665 67789999999999999984 333333333 57799
Q ss_pred EcCC-CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCC---CCcEEEEEEcCCCCEEE
Q 001159 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAP---GNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~---~~~i~~~~~s~~~~~l~ 557 (1135)
++.. +...++|.+ -.++.|+... ..-+.|..-....+||+++.....++ ... ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9864 555555543 3466675443 33445555577889999998776542 221 22346788999988887
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
-- | .+||.+..+.++.|..... -..-.|+|.|..++.-++ |||+++.+.+.....-.. ..
T Consensus 1247 nd-------G--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 ND-------G--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred eC-------c--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 53 2 4799998888887765542 223459999999988765 899999988877654322 56
Q ss_pred EEEcCCCCEEE
Q 001159 638 LRFNKEGSLLA 648 (1135)
Q Consensus 638 ~~~~~~~~~l~ 648 (1135)
+.|+..|..+.
T Consensus 1307 VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1307 VTFNSTGDVMY 1317 (1516)
T ss_pred EEeccCccchh
Confidence 77887776554
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.72 E-value=1.9e-06 Score=83.79 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=126.4
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCc--ceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
+..++.|.++++.+++.+.... .-|.. .+.++++|+|++++++.+....|..|.++.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 3446778888888887654321 11332 388999999999999999999999999987
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-----eecCCCCCeeEEEeeccCCccEE
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFI 514 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l 514 (1135)
................-.+..|+.... .+|++..||++.|||++.-.... +-..|.+.+..+.|++.+.-++|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 655433323334455667889998887 79999999999999998644332 22358999999999987666778
Q ss_pred EEEEcCCeEEEEeCcCCCceeEecCCC--------CcEEEEEEcCCCCEEEEEe
Q 001159 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 515 ~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~ 560 (1135)
+..-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 877778899999999877654333222 2356666666666555543
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.70 E-value=2.6e-07 Score=89.33 Aligned_cols=209 Identities=13% Similarity=0.193 Sum_probs=127.2
Q ss_pred eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC
Q 001159 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 428 (1135)
|+.+.|+-+- +|+++..++.+......++.+... |+-... .-+...+..|.++-.+-+.+-.+..++++..
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccC--cCceeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 678888888777776655544321 111100 1111123334444444445556788999999
Q ss_pred CCeEEEEEeCCCCceeeeeEee-cccCCEEEEEEecCCCeEEEEEEc-----CCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 429 KHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
||.+.+.+.+....+. ..+. .|.+ -.+.++...+. .+.+++ .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 1211 12233334444 333332 1224456665443322111112234999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEECCC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
++-+|... +.+++|+.||.+-+||.+...... .+..|...++.+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99998865 788999999999999999875544 5678899999999999 5678888874 88999999764
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=4.8e-06 Score=87.90 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=137.2
Q ss_pred CCeEEEEECCCccEEEEEeCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCC
Q 001159 861 GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 861 dg~i~vwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 938 (1135)
+|+|..||..+|+.+....-- .....+.++. ++..+++++.++.|+.||..+|+.+..+.. .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 588999999999998887531 1222222332 345677778999999999999999887764 232222122 2455
Q ss_pred eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCC
Q 001159 939 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDA 1016 (1135)
Q Consensus 939 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~ 1016 (1135)
.++.++.|+.+..+|..+++.+-......... . ..........++..+++ ..++.|..+|. +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-A---GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-C---STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccc-c---ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 56666688899999999998654321111111 0 11112222223666666 45899999998 7777666544221
Q ss_pred C-CCC------EEEEEEeeCCCEEEEEeCCCe-EEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1017 L-PAP------ISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1017 h-~~~------i~~~~~s~d~~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
. ... +.+-....++ .++.++.++. +.+ |+.+++.+-+..... .. . .... ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~----------~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKPISG----------IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEECSS-----------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEecCCC----------cc--C-Ccee-eCCEEEE
Confidence 1 111 2233333345 6666777775 555 999998663322110 11 1 1223 4568887
Q ss_pred EecCCcEEEEecCCCccccC
Q 001159 1089 GMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1089 g~~dg~v~~W~~~~~~~~~~ 1108 (1135)
++.++.|..||+.+++..|+
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998885
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=1.4e-05 Score=84.39 Aligned_cols=217 Identities=17% Similarity=0.130 Sum_probs=137.5
Q ss_pred EEEEeec-CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEEcccceeeEEe
Q 001159 845 ACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 845 ~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~lasg~~dg~v~iwd~~~~~~~~~l 921 (1135)
.+++|.+ ++.++.+-- .+.|..|+..+++... +.... ...+++. + ++.+++ +... .+.++|..+++....+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETT-CEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcC-ceEEEecCCCcEEEEe
Confidence 3578888 555555544 7999999998876533 33222 7788888 5 665554 4444 4566699888644333
Q ss_pred cC-----cCCCeEEEEEcCCCCeEEEEcCC--------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 922 KG-----HQNRITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 922 ~~-----h~~~i~~l~~s~d~~~l~s~~~D--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.. .....+.+++.++|.+.++.... |.|..++.. ++. . ...... .....++|+||++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~-~~~~~~-------~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-T-VVADGL-------GFPNGIAFSPDGK 146 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-E-EEEEEE-------SSEEEEEEETTSS
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-E-EEecCc-------ccccceEECCcch
Confidence 21 34568899999999988887644 446666666 331 1 112211 2357999999999
Q ss_pred EEEEE--ecCeEEEEec--CCcee---eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee
Q 001159 989 HLLVV--HESQISVYDS--KLECS---RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1061 (1135)
Q Consensus 989 ~l~~~--~d~~v~vwd~--~~~~~---~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 1061 (1135)
.|+++ ..+.|..|++ .+..+ ..+.......+....+++..+|++.++....+.|.+++.+ |+.+..+....
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 88764 5778888888 23211 2221111112347889999999988888889999999998 99888776441
Q ss_pred ccccccCCCCccEEEEecCCCCC-EEEE
Q 001159 1062 IPTYAVSNTAHPLVIAPHPSEPN-QIAL 1088 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~-~l~s 1088 (1135)
..+.+++|...+.+ +++|
T Consensus 225 ---------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 ---------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ---------SSEEEEEEESTTSSEEEEE
T ss_pred ---------CCEEEEEEECCCCCEEEEE
Confidence 35678888533434 4444
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.7e-07 Score=92.02 Aligned_cols=214 Identities=10% Similarity=0.153 Sum_probs=146.1
Q ss_pred cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC--C-eeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCeEEEE
Q 001159 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1135)
Q Consensus 451 ~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~iw 526 (1135)
-|...|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|.+.|.+++.+.+ |..+.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence 37777888776543 3 899999999999998432 1 234456678888988887654 478888777 9999999
Q ss_pred eCcCCCceeEec--CCCCcEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEEEecCCCCE
Q 001159 527 LYDYLGSRVDYD--APGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~--~~~~~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i~~s~~~~~ 602 (1135)
|+++....-.+. .-.+.+..+ .++. -.-+++.+. -.++.+.++|..... ...-+.+-+-.+|.++.+.+-+..
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 998765442221 122222222 2221 122333322 247789999977543 444555544448999999999999
Q ss_pred EEEEeCCCeEEEEECCC------CceEEEEe-------CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 603 FLAAGDEFQIKFWDMDN------MNMLTTVD-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 603 l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
+++....|.|.-|.... .+....++ .........++.|+|++..+.+-+.|..|++++..++ .+.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvq 237 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQ 237 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhh
Confidence 99999999999999873 11111111 1122235689999999999999999999999999999 6776
Q ss_pred hccc
Q 001159 670 MLEG 673 (1135)
Q Consensus 670 ~~~~ 673 (1135)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 6654
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=2.2e-05 Score=81.09 Aligned_cols=234 Identities=13% Similarity=0.159 Sum_probs=154.4
Q ss_pred CeeEEEEecCCCeEEEEEeccc-eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..-.++.+|+....+|.+-.-| ...+||..+++.+.... .-....|.|| -.|||||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4457888996666888887776 57899999998765310 1112224555 5799999999986
Q ss_pred e-----CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc----------------CCCcEEEEEcC
Q 001159 427 F-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDVV 485 (1135)
Q Consensus 427 ~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~----------------~d~~i~iwd~~ 485 (1135)
- ..|.|-|||... .+....++..|.-.-..+.+.|||+.+.++-|+ .+-.+.+-|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 357899999993 234555777777677789999999854444443 12356667778
Q ss_pred CCeeeee--e--cCCCCCeeEEEeeccCCccEEEEEEcCCe-------EEEEeCcCCCceeEecC-------CCCcEEEE
Q 001159 486 AGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDYDA-------PGNWCTMM 547 (1135)
Q Consensus 486 ~~~~~~~--~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~-------~~~~i~~~ 547 (1135)
+|+.+.. + .-|.-.|.-+++.+++ ..++..-..|. +-+++ .++....+.. -.+.+-++
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEE
Confidence 8887765 4 3377788888886653 44444433322 33332 2222222222 24578999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
++++++..+++.+. ..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccE
Confidence 99999999887763 4778999999999998876654 35566666665 555544 3443
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.66 E-value=8.9e-06 Score=91.78 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccE------------EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV------------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
......+++||||+++++++ +++|.|.|+.+.+. ..+..- .-.-...+|.+ +|....|-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 55667899999999999887 79999999988653 233221 22345678998 7888888889999
Q ss_pred EEEEEccc----------ceeeEEecCcCCC-----eEEEEEcCCCCeEEEEc
Q 001159 907 VQIYNVRV----------DEVKTKLKGHQNR-----ITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 907 v~iwd~~~----------~~~~~~l~~h~~~-----i~~l~~s~d~~~l~s~~ 944 (1135)
|..|++.+ ...+..+.-|-.+ ..+=.-.|||++|++..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999886 2344444433322 22222368999999864
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.64 E-value=9.3e-06 Score=91.64 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=100.7
Q ss_pred EeecCCCEEEEEeCCeEEEEECCC-----ccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccccee----
Q 001159 848 ALSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEV---- 917 (1135)
Q Consensus 848 ~~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~---- 917 (1135)
++.++|++... .+++|.|.|..+ .+.+..+. -......++++| ||+++++++ .+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34557887666 468899999988 45555554 455678999999 777665554 589999999987542
Q ss_pred --------eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC------CceeceeeeecCCCCCCCCCCceEEE-
Q 001159 918 --------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK------WEKLKSRFIQAPAGRQSPLVGETKVQ- 982 (1135)
Q Consensus 918 --------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~- 982 (1135)
+.+..- .......+|.++|....|...|..|..|+++. ++... ..+....-|. .+-++.
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~-~v~~k~dV~y----~pgh~~~ 433 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVD-PIVQKLDVHY----QPGHNHA 433 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCC-cceecccCCC----ccceeee
Confidence 333332 22345678999999999999999999999987 22111 1222222111 122222
Q ss_pred -----ECCCCcEEEEE----ecCe----------EEEEecCCceeecc
Q 001159 983 -----FHNDQTHLLVV----HESQ----------ISVYDSKLECSRSW 1011 (1135)
Q Consensus 983 -----~s~dg~~l~~~----~d~~----------v~vwd~~~~~~~~~ 1011 (1135)
-.|||+||++. .|+- -.+.|+++..+..+
T Consensus 434 ~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv 481 (635)
T PRK02888 434 SMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLV 481 (635)
T ss_pred cCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEE
Confidence 37999999983 2332 35677766655544
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=4.3e-05 Score=80.71 Aligned_cols=219 Identities=19% Similarity=0.209 Sum_probs=141.3
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe-cCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 413 ~v~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
++.|.+ ++.++++--..+.|..|+..++... .+.. .. ...+++. +++. ++.+..+ .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----~~~~-~~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----VIDL-PG-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEES-SS-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----EEec-CC-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 6777777777899999999886432 1221 22 7778887 6654 4444444 4556699888654
Q ss_pred eeecC-----CCCCeeEEEeeccCCccEEEEEEcC--------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 491 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
..... .....+.+++.+++ .+.++.... |.|..++.. .........-.....++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43322 34567788887754 666665543 456666665 33333333345678999999999888
Q ss_pred EEecCCCCCCeEEEEECCC-Ce-E--EEEeecccC--CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 558 SCGTSKEGESHLVEWNESE-GA-I--KRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~-~~-~--~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.+.. ..+.|..+++.. +. . .+.+..... .....++++.+|+..++....+.|.+++.+ |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 367799988853 22 1 222221111 136789999999988887788999999988 888888887633
Q ss_pred CCCcceEEEc-CCCCEEEEEE
Q 001159 632 LPASPRLRFN-KEGSLLAVTT 651 (1135)
Q Consensus 632 ~~~v~~~~~~-~~~~~l~~~~ 651 (1135)
.+++++|. ++.+.|.+.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 68999994 6666665544
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.59 E-value=3.8e-06 Score=81.47 Aligned_cols=95 Identities=21% Similarity=0.346 Sum_probs=71.9
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee-EEecCcCCCeEEEEEcC-CCCe
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSP-TLNA 939 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~i~~l~~s~-d~~~ 939 (1135)
+..+.|+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+..... ..+..|..+|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 344555554333222212223349999999977788999999999999999877543 44789999999999998 4689
Q ss_pred EEEEcCCCcEEEEeCCC
Q 001159 940 LVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~ 956 (1135)
|++++.||.+--||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999875
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.3e-05 Score=82.80 Aligned_cols=249 Identities=14% Similarity=0.160 Sum_probs=148.5
Q ss_pred hccCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
++.+|...|..++|||..+ ++..++.+..|+|.|+.+...+. .+..| ..+++++|.-|..+ +|+.|..+|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999888 78889999999999999975554 45556 78999999999876 8999999999999
Q ss_pred EEcCCCee-eeeecC--CCCCeeEEEeeccC----CccEEEEEEcCCeEEEEeCcCCCc--eeEecC-CCCcEEEEEEcC
Q 001159 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDA-PGNWCTMMAYSA 551 (1135)
Q Consensus 482 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~~~~s~ 551 (1135)
+|++..+- +..+.+ ...+|..++..+.+ .|.+++..+.+ +..|.+.-... ...... ..+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986432 223322 23345544432211 12344444433 33454432221 222222 234555666766
Q ss_pred CCCEEEEEecCCCCCCeEE----EEECCCCeEEEEee----cccCCce---eEEEecCCCCEEEE-EeCCCeEEEEECCC
Q 001159 552 DGTRLFSCGTSKEGESHLV----EWNESEGAIKRTYS----GFRKRSL---GVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~----~~~~~~v---~~i~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1135)
..+.++....++..-.+++ -.|-.+|..+..-+ +.....+ ..+.-.++.++++. ++..+.+.+||+.+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666655443211111111 11223333332211 1111011 11222445566655 55668899999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcC-C-CCEEEEEECCCcEEEEEcC
Q 001159 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~ 662 (1135)
++.++++... .+|..+.... + +.+|++-++| .++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLTDD-RVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhheecc-eEEEEecC
Confidence 9999999865 2566665543 2 4466666554 88888654
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=1.1e-05 Score=85.23 Aligned_cols=219 Identities=16% Similarity=0.132 Sum_probs=139.1
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeecc
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~ 508 (1135)
+|+|..||..+|+.+-.. .+..-.....+.. .+++. .+++++.++.|..||..+|+.+.++.. ..++..... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~-~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~- 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY-DLGPGIGGPVATA-VPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-V- 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEE-ECSSSCSSEEETE-EEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-E-
T ss_pred CCEEEEEECCCCCEEEEE-ECCCCCCCccceE-EEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-e-
Confidence 688999999888766533 2211112222222 33455 567778899999999999999887764 222211111 1
Q ss_pred CCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCC---CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
.+..++.++.++.+..+|..+++..... .... ..........++..++++.. ++.|..+|+.+|+.+..+.
T Consensus 75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp -ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred -cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2257777888999999999999888763 3221 11222233334777777753 7889999999999998887
Q ss_pred cccCCc---------e-eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 585 GFRKRS---------L-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 585 ~~~~~~---------v-~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
...... + ..+.+. ++ .++.++.++.+..+|+.+++.+.... .. .+.. ....++..|++++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDG 222 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTT
T ss_pred cCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCC
Confidence 744211 1 222233 34 77777777754444999999765333 11 2222 1346777888888999
Q ss_pred cEEEEEcCCCch
Q 001159 655 GIKILANSDGVR 666 (1135)
Q Consensus 655 ~i~iwd~~~~~~ 666 (1135)
.+..||..+++.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 999999999843
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=1.2e-05 Score=94.72 Aligned_cols=273 Identities=7% Similarity=0.039 Sum_probs=161.1
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..| .++.|..++..++++...|.|.+-|..+ ..... .+. - ...|.+++||||
T Consensus 69 ~~i-~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~ei---vg~-v-d~GI~aaswS~D 120 (1265)
T KOG1920|consen 69 DEI-VSVQFLADTNSICVITALGDIILVDPET----------------------LELEI---VGN-V-DNGISAASWSPD 120 (1265)
T ss_pred cce-EEEEEecccceEEEEecCCcEEEEcccc----------------------cceee---eee-c-cCceEEEeecCC
Confidence 567 9999999999999999999988864332 21110 110 1 788999999999
Q ss_pred CCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-----eeEEec-----
Q 001159 853 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-----VKTKLK----- 922 (1135)
Q Consensus 853 g~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~-----~~~~l~----- 922 (1135)
++.++..+.+..-++...+..++....-+.+ -.+ .++ .+.+++...=.-+.-..|+ .+...+
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d------~~~-~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDAD------DER-KSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhccccccc------ccc-ccc-cceecccccceeeecchhhhcccccccccccccch
Confidence 9999999854444444445544433221110 011 122 2233333211111111111 110000
Q ss_pred CcCCCeEEEEEcCCCCeEEEEc----CC-CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE----E
Q 001159 923 GHQNRITGLAFSPTLNALVSSG----AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV----V 993 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~l~s~~----~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~ 993 (1135)
.-.+.=++|.|--||+++|+.. .+ +.|++||-+ +.. ....... ...-.+++|-|.|.++++ +
T Consensus 193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L------ns~se~~--~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL------NSTSEPV--EGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred hhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh------hcccCcc--cccccceeecCCCCeEeeeeecC
Confidence 1122335789999999998732 23 789999988 331 1111000 023368999999999998 2
Q ss_pred ecCeEEEEecCCceeeccCCCCCC-CCCEEEEEEeeCCCEEEE---EeCCCeEEEEECCCceeeeeeCCceeccccccCC
Q 001159 994 HESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSN 1069 (1135)
Q Consensus 994 ~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~d~~~l~~---~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
+|+.|.+|.-+|-....+...... ..+|..++|..++..||+ ......|++|-+.+....-.-. ...+..
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~---- 337 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK---- 337 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc----
Confidence 577899999877666554433222 344999999999999988 4455559999998865442211 111111
Q ss_pred CCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1070 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1070 ~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
. -++|+|.....|..-..+|...+.+.
T Consensus 338 -~---~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 338 -A---LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -c---cccccCCCceeEEEEecCCcEEEEEE
Confidence 1 17788866666666556776555443
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=0.00012 Score=71.38 Aligned_cols=144 Identities=8% Similarity=0.072 Sum_probs=93.8
Q ss_pred EEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
..-||.+.+++.|+..+.+.--|..+|... |+.. -...|-+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~-------We~i-------------lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLI-------WEAI-------------LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEE-------eehh-------------hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 344566778999999999998899888754 2210 11223222222 57789999999999
Q ss_pred EEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCcc
Q 001159 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 433 ~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1135)
++.+.++|+.......+..- . ......+++. ++..|+.|++.+.-|..+..++...+...+.-.+-++.|.+ .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~--~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD--G 148 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCC--c
Confidence 99999999766543332211 1 1234456777 89999999999999999999998876444333333444432 3
Q ss_pred EEEEEEcCCeEE
Q 001159 513 FIFSTAIDGKIK 524 (1135)
Q Consensus 513 ~l~s~s~dg~i~ 524 (1135)
.|+.+...|.+.
T Consensus 149 sly~a~t~G~vl 160 (354)
T KOG4649|consen 149 SLYAAITAGAVL 160 (354)
T ss_pred eEEEEeccceEE
Confidence 444455555444
No 315
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.53 E-value=0.0055 Score=71.62 Aligned_cols=224 Identities=12% Similarity=0.118 Sum_probs=120.7
Q ss_pred EEEEEeCCeEEEEECCCccE--EEEEeCCCCCeEEEEEecCCCcEEEEEeC-----------C---CcEEEEEcccceee
Q 001159 855 YVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGME-----------D---SSVQIYNVRVDEVK 918 (1135)
Q Consensus 855 ~la~~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~~lasg~~-----------d---g~v~iwd~~~~~~~ 918 (1135)
.++++..+.+++.-++.-+. ++++. -......+++.+ ....+++.+. . ..++++|-+|-+.+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 45556666677766654322 23332 222345566655 3333433321 1 23667776665544
Q ss_pred EEec--CcC--CCeEEEEEcCC-CCeEEEEc----------CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEE
Q 001159 919 TKLK--GHQ--NRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 919 ~~l~--~h~--~~i~~l~~s~d-~~~l~s~~----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
...+ ... -.|.+..|..| +.+++.|. ..|.|.++.+...+.+....-....| ...+.
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G--------av~aL 835 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG--------AVYAL 835 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc--------ceeeh
Confidence 3322 111 12445558888 66777664 23678888777643332221111111 12233
Q ss_pred CCCCcEEEEEecCeEEEEecCCc-eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEE--ECCCceeeeeeCCce
Q 001159 984 HNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF--DAETLRFRCRIGPSA 1060 (1135)
Q Consensus 984 s~dg~~l~~~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vw--d~~~~~~~~~~~~~~ 1060 (1135)
-.-...++++-+..|++|+.+.+ .++.- -.|..++..+...-.|..+++|.-=++|.+. +-..|.+.-..+ .
T Consensus 836 ~~fngkllA~In~~vrLye~t~~~eLr~e---~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D 910 (1096)
T KOG1897|consen 836 VEFNGKLLAGINQSVRLYEWTTERELRIE---CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--D 910 (1096)
T ss_pred hhhCCeEEEecCcEEEEEEccccceehhh---hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--h
Confidence 33344556667788999999443 44432 3347889999999999999999888877664 444444443222 1
Q ss_pred eccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
+. +.+.+++.+- +++..+-+..+|.+++-...+
T Consensus 911 ~~-------p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 911 YN-------PNWMTAVEIL--DDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred hC-------ccceeeEEEe--cCceEEeecccccEEEEEecC
Confidence 11 1233344444 334555667778888776554
No 316
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.53 E-value=1.3e-06 Score=90.36 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeE-EEEEEcCCCcEEEEEcCCCe
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQL-CIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~-~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+..+|++++||++..+....++++..... .+.... ..-...-+++.|..+.... .....++...+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44566788888999888888877777765433 111111 1122334455555555431 23344566677778776655
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+. .+-||-..++.++++|++ ++|+++..|..|++-.+...-.+..+ -+|..-|..++.-++. .|++++ ||+
T Consensus 144 ~~-~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~s----GD~ 215 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGS----GDK 215 (390)
T ss_pred cc-hhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecC----CCC
Confidence 54 445899999999999876 89999999999999877655544444 4588899999987654 477776 489
Q ss_pred eEEEEECCCCeEEEEeec
Q 001159 568 HLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~ 585 (1135)
+|++||+.+|+.+.++..
T Consensus 216 tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCDL 233 (390)
T ss_pred cEEEEecccCCcccccch
Confidence 999999999998876654
No 317
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.52 E-value=0.0058 Score=71.45 Aligned_cols=585 Identities=10% Similarity=0.058 Sum_probs=277.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----C
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----G 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~ 420 (1135)
..+-..|+.+-++| ++++|+.-|.=.+-.+.+-....++. .....+ ..-++|..+..-.. +
T Consensus 305 e~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~------------~ilet~-~NLgPI~Dm~Vvd~d~q~q 369 (1096)
T KOG1897|consen 305 ETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV------------VILETF-VNLGPIVDMCVVDLDRQGQ 369 (1096)
T ss_pred CcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh------------hhhhhc-ccccceeeEEEEeccccCC
Confidence 44455677777888 57788877766666665433221100 000001 13347777766442 2
Q ss_pred CeEEEEe---CCCeEEEEEeCCCCceeeeeEeecccCCEEEEE--EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 421 LMLGVAF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 421 ~~las~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
..+++|+ .||++++....-+-.......+.| -..++.+. +.++-.. +|+.+-.+ .-++..+...-......+
T Consensus 370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~g 446 (1096)
T KOG1897|consen 370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDPG 446 (1096)
T ss_pred ceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEecccc
Confidence 3566654 488999986544322222224555 44567776 4443332 33333222 223334332211112222
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
-......+..+... |+.|+-. ....||+++-. .....+.... .++..+.+.+...++.++. ++.+...++.
T Consensus 447 f~~~~~Tif~S~i~-g~~lvQv-Ts~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i~ 517 (1096)
T KOG1897|consen 447 FSTDEQTIFCSTIN-GNQLVQV-TSNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEIE 517 (1096)
T ss_pred ccccCceEEEEccC-CceEEEE-ecccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEee
Confidence 22333333333221 1222222 22446666433 2222333333 3333344444455555542 4566666766
Q ss_pred CCeEEEEeecccCCceeEEEecCCC------CEEEEEeCCCeEEEE-ECCCCceEEEEeCCCC--CCCcceEEEcCCCCE
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTR------NRFLAAGDEFQIKFW-DMDNMNMLTTVDADGG--LPASPRLRFNKEGSL 646 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~------~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 646 (1135)
.+.+....+......|.|+.++|-| ++++.|..+..+.+. -..+...+........ ...|.-..|-.|..+
T Consensus 518 ~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 518 DGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceE
Confidence 6654333333333478999999742 256777655554443 3333333333222111 123444455567889
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|.++..||.+.-+.+....-.+...+...- ...+..+..+.+..
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~l----------Gt~P~~Lr~f~sk~-------------------------- 641 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTL----------GTQPISLRTFSSKS-------------------------- 641 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEcccccccc----------CCCCcEEEEEeeCC--------------------------
Confidence 999999999887755433111111100000 00000111000000
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC-CcceeEecccceeeeEEeccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS-GLSLLALASNAVHKLWKWQRT 805 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d-g~~l~~~~~dg~i~iw~~~~~ 805 (1135)
....-...|.-.++.+..+.+.+-.+.- +.. . .-..|+.+ ..--++....+.+++-.+..
T Consensus 642 ~t~vfa~sdrP~viY~~n~kLv~spls~------------kev---~---~~c~f~s~a~~d~l~~~~~~~l~i~tid~- 702 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIYSSNGKLVYSPLSL------------KEV---N---HMCPFNSDAYPDSLASANGGALTIGTIDE- 702 (1096)
T ss_pred ceEEEEeCCCCEEEEecCCcEEEeccch------------HHh---h---hhcccccccCCceEEEecCCceEEEEecc-
Confidence 0001111122222222233332222211 000 0 00111111 11122233334455543321
Q ss_pred cCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe------------C---CeEEEEECC
Q 001159 806 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------G---GKVSLFNMM 870 (1135)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~------------d---g~i~vwd~~ 870 (1135)
...-...+ .+. ......+++.+....+++.+ . ..++++|-.
T Consensus 703 ------------------iqkl~irt--vpl----~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n 758 (1096)
T KOG1897|consen 703 ------------------IQKLHIRT--VPL----GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN 758 (1096)
T ss_pred ------------------hhhcceee--ecC----CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence 00000111 111 33445555555344443332 1 137788877
Q ss_pred CccEEEEEeCC-C---CCeEEEEEecCCCcEEEEEe----------CCCcEEEEEcccceeeEEecC--cCCCeEEEEEc
Q 001159 871 TFKVMTMFMSP-P---PAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKLKG--HQNRITGLAFS 934 (1135)
Q Consensus 871 ~~~~~~~~~~h-~---~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~--h~~~i~~l~~s 934 (1135)
+.+.++..+-. . -.|.++.|..|.+.++++|+ ..|.|.+|....++.++.+.. -.+.+.++..
T Consensus 759 Tf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~- 837 (1096)
T KOG1897|consen 759 TFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE- 837 (1096)
T ss_pred ceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-
Confidence 77665543211 1 23555668874478888886 357888888877443433322 2345555543
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe-cCeEEEEec---CCceeec
Q 001159 935 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS---KLECSRS 1010 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~v~vwd~---~~~~~~~ 1010 (1135)
-+|++||.- ...|+++++.+.+.+. .-..+. .++..+...-.|..++++. -+.+.+... ++.....
T Consensus 838 fngkllA~I--n~~vrLye~t~~~eLr-----~e~~~~---~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERELR-----IECNIS---NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccceeh-----hhhccc---CCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 267777654 5679999999875332 333333 5678888888898888863 455555444 3333322
Q ss_pred cCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1011 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1011 ~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
..+.++..++++.+-.+..++. +..+|.+.+-..++
T Consensus 908 --ArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 908 --ARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKDS 943 (1096)
T ss_pred --ehhhCccceeeEEEecCceEEe-ecccccEEEEEecC
Confidence 2345577889999877776655 45788888877653
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=4.3e-07 Score=91.42 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=123.5
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~ 431 (1135)
++||-+-.-+-++.+.+-.|-+-|+++|..-. + ..++.|.++.|...+.++..|..+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 36664322222444557788999999885432 2 26678999999999999999999999
Q ss_pred EEEEEeCCCCc--eeeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCCCee---eeeecCCCCCeeEEEe
Q 001159 432 VHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 432 i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i~~ 505 (1135)
|..+|+..+.. ..+...+ .|...|+++.... +++ +|++.+.+|.|++||++.-++ +.++.||-..-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986511 1111122 4899999999887 566 788999999999999987666 8889999766665555
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 540 (1135)
+-++....+++++.|-..|+|.++.+....+++..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555578999999999999999988777665543
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.46 E-value=5.1e-05 Score=84.67 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=150.9
Q ss_pred ecCCCeEEEEE--------eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 355 sp~g~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
|||++++|+.- +..+.+.|||+.+++... +......+....|||+|+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888665522 234689999999876442 11225678899999999999998
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeec-------c---------cCCEEEEEEecCCCeEEEEEEc-CCCc-----------
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKM----------- 478 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~v~~s~d~~~~~l~s~~-~d~~----------- 478 (1135)
. ++.|.+++..++...+. +..| - -+.-..+.||||+++ |+... ++..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 5 56799998877643321 1122 0 112356889999995 33322 1222
Q ss_pred ------------------------EEEEEcCCCeeee-e-e---cCCCCCeeEEEeeccCCccEEE--EEEcCC---eEE
Q 001159 479 ------------------------IKVWDVVAGRKQY-T-F---EGHEAPVYSVCPHHKESIQFIF--STAIDG---KIK 524 (1135)
Q Consensus 479 ------------------------i~iwd~~~~~~~~-~-~---~~h~~~v~~i~~~~~~~~~~l~--s~s~dg---~i~ 524 (1135)
+.|+|+.+++... . . ..-...+..+.|.+++ ..|+ ..+.+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 2344554444321 1 1 1233456677777654 4232 233332 366
Q ss_pred EEeCcCCCceeEecC-CCCcE---EEEEEc-CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce-eEEEecC
Q 001159 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~-~~~~i---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~i~~s~ 598 (1135)
++|..++........ ...+| ....+. +++..++..+. +++-.+|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 667776655443322 22222 244554 78887776664 667788999998877744 4443332 45 4577888
Q ss_pred CCCEEEE-EeC----CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 599 TRNRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 599 ~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
+++.++. +.. ...|+.-++..+..+..+...... ...+.|||++++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 8877765 443 235666666634555666654332 158999999998876543
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=0.0015 Score=63.93 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=93.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
.+++.||..+.+..-|..++........ +.+|.+-+.- -|++++.|.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5777888888888888777766554322 2233332222 4667887775 77899999999998888876554 22
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEEEEE
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 660 (1135)
......+++..+++|+.|+..+..|.++...+...+..+.. ..+-++.| ++.+.+ +...|.+.--.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~-a~t~G~vlavt 163 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYA-AITAGAVLAVT 163 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEE-EeccceEEEEc
Confidence 23556788999999999999999999999999887765542 23444556 444443 44444444333
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=6.7e-07 Score=62.75 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.1
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2e-06 Score=89.71 Aligned_cols=214 Identities=14% Similarity=0.079 Sum_probs=150.0
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---ceeeEEecCcCCCeEEEEEcCCCCeEEEEcC-CCcEEEEeCCC
Q 001159 881 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---DEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK 956 (1135)
Q Consensus 881 h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iwd~~~ 956 (1135)
|.+.|+.+.-+. .+++.+++.||.++.|.-.. -+.+..+..|-+.|.+++.+.|+.++.|++. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 777888887764 67999999999999997442 2455667889999999999999999999887 99999999998
Q ss_pred CceeceeeeecCCCCCCCCCCceEEEECCCC---cEEEEE--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCC
Q 001159 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ---THLLVV--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGL 1031 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~ 1031 (1135)
-.......+.-+.+ .+..+...| ..++++ .++.+.|+|-.+..........-|..+|..+.+.+-+.
T Consensus 86 ~DminmiKL~~lPg--------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG--------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cchhhhcccccCCC--------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 66443222222222 122222223 245553 67899999983333222222344699999999999999
Q ss_pred EEEEEeCCCeEEEEECCC------ceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCcc
Q 001159 1032 LVYAGFCDGAIGVFDAET------LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~ 1105 (1135)
.+++....|.|.-|..+. .+....+.....+ -........+.++.|+| +|..+.+-+.|..|+++++++++.
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchh
Confidence 999999999999999883 1111111111100 00112224567899999 789999999999999999999884
Q ss_pred c
Q 001159 1106 K 1106 (1135)
Q Consensus 1106 ~ 1106 (1135)
.
T Consensus 236 v 236 (558)
T KOG0882|consen 236 V 236 (558)
T ss_pred h
Confidence 3
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=0.0004 Score=72.82 Aligned_cols=205 Identities=19% Similarity=0.187 Sum_probs=126.1
Q ss_pred EEEeecCCCEEEEEe---CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceeeEE-
Q 001159 846 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 920 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~- 920 (1135)
.+++|.||+++.+.. .-.|.|.|+..++.+.++.... +..+--+ +++-+.+-+.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888999888875 4679999999999988886332 3333222 34567788899999998888 4544322
Q ss_pred ---ecCcCCCe-EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC---CC-CCCCceEEEECCCCcEEEE
Q 001159 921 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR---QS-PLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 921 ---l~~h~~~i-~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~~~s~dg~~l~~ 992 (1135)
|..-.+++ ..-+++..+..++-.+-+|.|+--|+................. .. ...+-.-+++++..+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 2334555555666677888888888876653322222211000 00 0133456888887776666
Q ss_pred -Ee---c-------CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCC-EEEEE-eCCCeEEEEECCCceeeeeeCC
Q 001159 993 -VH---E-------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 993 -~~---d-------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~~~-~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
-+ + ..|-+||+ +.+.+..+.. ..++.+++.|.|.+ +|++. ..++.+.|||..+|++++++..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 22 1 23777787 7777777654 34678999999887 55444 4689999999999999998773
No 324
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=7e-05 Score=78.32 Aligned_cols=285 Identities=9% Similarity=0.088 Sum_probs=159.5
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----------CCCeEEEEECCCCceEEEEeCCCC-----
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1135)
++++++|..+++.+-.+..... ..+..+|+++.+++++ ..-.|.+||..+..+...+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4699999999998888776543 3466899999998754 344699999999988887765432
Q ss_pred CCCcceEEEcCCCCEEEEEEC--CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 709 (1135)
....+..+++.|++++++... ...|.|.|+... +....+.-.... .
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~--------------~----------------- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCW--------------L----------------- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEE--------------E-----------------
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEE--------------E-----------------
Confidence 123456788888888776543 456788888766 333332211000 0
Q ss_pred CCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee
Q 001159 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~ 789 (1135)
.....+..+...+.||.+.-..++.......... . ........+...-++...+..++
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~-~F~~~~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K-VFDPDDDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E-ESSTTTS-B-S--EEETTTTEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeec-c-ccCCCCcccccccceECCCCeEE
Confidence 0011223455556677766666664322221111 1 11111122212334444554455
Q ss_pred EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe----CC---
Q 001159 790 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG--- 862 (1135)
Q Consensus 790 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~----dg--- 862 (1135)
-.+-+|.++--++......+ ..-|...+......... .+.-.-+++++....|.+-- ++
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~Wr-----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGWR-----PGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTEE-----E-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred EEecCCEEEEEeccCCcccc---------cCcccccCccccccCcC-----CcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 56667777766655432111 11222221110000000 23334577777655554432 22
Q ss_pred ----eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceeeEEecC
Q 001159 863 ----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 863 ----~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
.|.++|+.+++.+..+.. ...+.+|+++.++..+|.+.+ .++.+.+||..+|+.+.++..
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999999873 236789999996666776554 578999999999999988874
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=88.23 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=122.4
Q ss_pred EEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC----Cc
Q 001159 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GS 533 (1135)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~ 533 (1135)
.++|+-+-.... ++.+.+..|-+-|+++|... .|. ..+.|.++.|+... ++++.|+.+|.|..+|++.. ..
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCc
Confidence 346665433323 55666778889998888653 343 56778888887755 79999999999999999876 33
Q ss_pred eeEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccCCce-eEEEecCCCCEEEEEeC
Q 001159 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSL-GVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 534 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v-~~i~~s~~~~~l~~~~~ 608 (1135)
....-.|+..|+++..-. ++++|++.+. +|.|.+||.+--+. ++++.||-...- .-+-..+....++++|.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 444555788888887766 6777777654 88999999986655 899999865221 12345667788999999
Q ss_pred CCeEEEEECCCCceEEEEeCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
|...|||.++++.++.+++..
T Consensus 367 DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeEEEEEecccCceeeccCCC
Confidence 999999999999999988755
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.38 E-value=5.4e-06 Score=94.25 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=133.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEE
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 930 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~ 930 (1135)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-|.. +++.+.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 455677777 788999999998888877655556776766 5689999999999999999999999999999999987
Q ss_pred EEEcCCCCeEEEEcC---------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC--cEEEEEecCeEE
Q 001159 931 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVVHESQIS 999 (1135)
Q Consensus 931 l~~s~d~~~l~s~~~---------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~d~~v~ 999 (1135)
+.. .|+.|+++|. |..|+|||+..-+.+.. ++.+.+ ..-+.|.|.- +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6889999874 66799999987654332 222222 2456666653 344447788888
Q ss_pred EEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 1000 VYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 1000 vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
+-|. ........... .-+..+.++.+|++|..||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8884 21111111111 1145599999999999999999999999998
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=0.0001 Score=87.36 Aligned_cols=278 Identities=11% Similarity=0.173 Sum_probs=159.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.+.|.++.|.-++.. +..+...|.|.+-|.++..... ...-...|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 358999999999985 4557789999999887764332 2335678999999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeec---ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-eeeecCCCCCee
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~---h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1135)
.+..+++.+.+-.- ..+... .+.. ..+....+-|-....+ +-|+ .|.....+...... .... .-.+.=+
T Consensus 127 iT~~~tll~mT~~f-~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDF-EPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKT 199 (1265)
T ss_pred EeCCcEEEEEeccc-cchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCc
Confidence 99988887755321 111100 1100 0112223344332221 1111 11111111000000 0000 1122234
Q ss_pred EEEeeccCCccEEEEE-----EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 502 SVCPHHKESIQFIFST-----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
+|+| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ ++.|.++..+
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN- 274 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN- 274 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence 5666 5566888873 223789999876 3222222223334568999999999998775433 5578888743
Q ss_pred CeEEEE----eecccCCceeEEEecCCCCEEEE---EeCCCeEEEEECCCCce--EEEEeCCCCCCCcceEEEcCC-CCE
Q 001159 577 GAIKRT----YSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKE-GSL 646 (1135)
Q Consensus 577 ~~~~~~----~~~~~~~~v~~i~~s~~~~~l~~---~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~ 646 (1135)
|-.-.. +..... .+..++|+.++..|++ ......|++|...+... .+.+..... .-+.|+|. ...
T Consensus 275 GL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~ 349 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKT 349 (1265)
T ss_pred CccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCcee
Confidence 332222 222222 3889999999999887 45556699999987553 333433322 22788883 334
Q ss_pred EEEEECCCcEEEEEc
Q 001159 647 LAVTTSDNGIKILAN 661 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~ 661 (1135)
+.+-..+|...++++
T Consensus 350 L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 350 LHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEecCCcEEEEEE
Confidence 444446676666655
No 328
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.3e-06 Score=86.47 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHH
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIR 77 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~ 77 (1135)
.-+.|+|..||..+||.++|..|-++|.+. .++...++++++|+...|+.-...-+..-. +....+.|.+.
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~lR 194 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQLR 194 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHHH
Confidence 346899999999999999999999999986 237888999999999888765543211100 11224889999
Q ss_pred HHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccc
Q 001159 78 KQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQ 126 (1135)
Q Consensus 78 ~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 126 (1135)
.|.|+||+..+++.+|+.+.++.+.|...-+.++++....++.++....
T Consensus 195 lQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~ 243 (389)
T KOG0396|consen 195 LQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS 243 (389)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence 9999999999999999999999999998888899999999999876543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=3.4e-05 Score=87.72 Aligned_cols=204 Identities=14% Similarity=0.116 Sum_probs=130.5
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC-eEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCCceec-
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 961 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s~~~D~~-----i~iwd~~~~~~~~- 961 (1135)
+|++ ++..+|.|+.+|.|.+++- +-+.++.++.+... |+.+-...+..+|++.+.|+. ++||+++.-+.-.
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4556 6778999999999988873 34555778887777 555554445579999988764 9999998653322
Q ss_pred eeee--ecCCCCCC--CCCCceEEEECCCCcEEEEE-ecCeEEEEec---CCceeeccCCCCCCCCCEEEEEEeeCCCEE
Q 001159 962 SRFI--QAPAGRQS--PLVGETKVQFHNDQTHLLVV-HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 962 ~~~~--~~~~~~~~--~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~---~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l 1033 (1135)
..++ ....++.. ...+++.++.|.+-+.+|+| .+|.|..+.- ..+..+.-. .+.-..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCCCCceeeEEecCCcee
Confidence 2232 11111111 13678999999999999997 6888888865 111111111 12227899999999999873
Q ss_pred EEEeCCCeEEEEECCCcee--eeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccC
Q 001159 1034 YAGFCDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1034 ~~~~~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~ 1108 (1135)
+.+.+-..|.+|.+. |+. .+.+. .++...-|.++++..+. +++++. ..|.+|+...-+.-|.
T Consensus 187 lFv~Tt~~V~~y~l~-gr~p~~~~ld----------~~G~~lnCss~~~~t~q-fIca~~-e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLS-GRTPSLKVLD----------NNGISLNCSSFSDGTYQ-FICAGS-EFLYFYDSDGRGPCFA 250 (933)
T ss_pred EEEEecceeEEEEec-CCCcceeeec----------cCCccceeeecCCCCcc-EEEecC-ceEEEEcCCCcceeee
Confidence 333455689999998 443 22233 22355568888774433 444333 4788888876554443
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.31 E-value=2.4e-06 Score=59.92 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 872 ~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
++++.++.+|.+.|++|+|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=6.8e-05 Score=85.36 Aligned_cols=203 Identities=16% Similarity=0.171 Sum_probs=140.3
Q ss_pred EEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEeCCCc-----EEEEEcccc----
Q 001159 847 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSS-----VQIYNVRVD---- 915 (1135)
Q Consensus 847 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~~dg~-----v~iwd~~~~---- 915 (1135)
-++++.+..+|.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.+.|+. |+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 45788899999998 899888874 45666888888777 55555554 5578888887754 899998742
Q ss_pred --eeeE--EecC-----cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 916 --EVKT--KLKG-----HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 916 --~~~~--~l~~-----h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+++. .+.. ...++.+++.|.+-+.+|.|-.||.|..+.-+--.....+......+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 2231 1222 245788999999999999999999999885443222222222222332 68999999999
Q ss_pred CcE-EEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 987 QTH-LLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 987 g~~-l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
++- +.++.-..|.+|.++++. ......+.|+....|..|++...-+++++ +..+.+|+.+....-..+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 445667789999997666 23333456688899999987655455553 4579999998554444444
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.25 E-value=0.002 Score=69.18 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=140.2
Q ss_pred EEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCCC-cceEEEEEcCCCCeEEEEeC
Q 001159 352 MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las~~~ 428 (1135)
=+|.+||++||+++..|| .+.+-|+.+++... |.... .......++|+++.++-...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 368899998999888777 45566777776543 22221 22334667898898877767
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe--cCCCeEEEEEEc----------------------CCCcEEEEEc
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG----------------------DDKMIKVWDV 484 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~ 484 (1135)
...++-.|+.+.+.. . .+......+-...|. .|+. .++..- ..+.|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 778988999986543 2 333345555456664 3454 333221 1234555677
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE---cCCe-EEEEeCcCCCcee-EecC--CCCcEEEEEEcCCCCEEE
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGK-IKAWLYDYLGSRV-DYDA--PGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~-i~iwd~~~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~ 557 (1135)
.+|+....+. -...+.-+.|+|..+ ..|+-|- .|.. -|||-+++..... .+.. ....+..=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7777544443 456677888998764 3444432 2232 3667665543322 2211 233555567999999887
Q ss_pred EEec-CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC----------------CeEEEEECCCC
Q 001159 558 SCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNM 620 (1135)
Q Consensus 558 ~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----------------g~i~iwd~~~~ 620 (1135)
..+. .+..+..|.-+|+.+++........ ...-+-.++||+.++-=+.| --|+++++..+
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 5443 3334567888899988654432221 23345567888877763322 15677888776
Q ss_pred ceEEEEeCC--------CCCCCcceEEEcCCCCEEEEEEC-CCcEEEEEc
Q 001159 621 NMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 621 ~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 661 (1135)
......... .....-.-..|+|||++++..|+ .|...||-+
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 643222211 00112246899999998887665 666666643
No 333
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.21 E-value=5.5e-06 Score=78.90 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=97.7
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHH
Q 001159 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1135)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1135)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998874332111 1248899999999999999999999999999887764335678888888
Q ss_pred hhcccCccc--hhhhccCCCchhHHHHHHHHHHhhcccCcccccccCCCCCc-hHHHHHHHHHHHHH
Q 001159 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNW 181 (1135)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~ 181 (1135)
++..++..+ ...+..+-+. ..|+.+.+.+.+.+-...- +| ...|+.++++....
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~ 140 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA 140 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence 888776554 3333333333 7788999988887654221 22 45688888876544
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.00047 Score=76.96 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=108.6
Q ss_pred EEEEEecCCcceeEecc-cceeeeEEeccccCC-------------CCCcccccccCeeecCCCCcceeccCCC--CCCC
Q 001159 777 VRLIYTNSGLSLLALAS-NAVHKLWKWQRTERN-------------PSGKATANVAPQLWQPPSGTLMTNDINE--SKPT 840 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~ 840 (1135)
..+.|||||++|+...- +..+..+.+...... ..|.......+.+++..++......... ..-
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~- 182 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ- 182 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-
Confidence 55677888877776654 344554444322111 1122223334556777777653322220 001
Q ss_pred CCceEEEEeecCCCEEEEE-e--C---CeEEEEECCCccEEEEEeC-CC---CCeEEEEEe-cCCCcEEEEEeCCCc--E
Q 001159 841 EESAACIALSKNDSYVMSA-S--G---GKVSLFNMMTFKVMTMFMS-PP---PAATFLAFH-PQDNNIIAIGMEDSS--V 907 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~-~--d---g~i~vwd~~~~~~~~~~~~-h~---~~v~~l~~s-p~~~~~lasg~~dg~--v 907 (1135)
...+..+.|+++++.|+.. . + -.+.+.|..++.+...... .. ..-....|. ++++.+|.....||- |
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 6778999999999944443 3 2 2377788887665433322 22 223456665 646677777777775 4
Q ss_pred EEEEcccceeeEEecCcCCCeEE-EEEcCCCCeEE-EEcCCC----cEEEEeCC-CCceeceeeeecCCCCCCCCCCceE
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALV-SSGADA----QLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETK 980 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~-l~~s~d~~~l~-s~~~D~----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 980 (1135)
++++..++. ...+....-.|+. +.++++++.+. ++..+. .+..-++. .++. .++....+. ...
T Consensus 263 y~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~------~~~ 332 (353)
T PF00930_consen 263 YLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGD------HYS 332 (353)
T ss_dssp EEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTSST------TEE
T ss_pred EEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCC------ceE
Confidence 455555555 4456555556755 67788876554 554422 34444555 3331 223222211 148
Q ss_pred EEECCCCcEEEEE
Q 001159 981 VQFHNDQTHLLVV 993 (1135)
Q Consensus 981 ~~~s~dg~~l~~~ 993 (1135)
+.|||+|++++..
T Consensus 333 ~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 333 ASFSPDGKYYVDT 345 (353)
T ss_dssp EEE-TTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999999873
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.0005 Score=76.97 Aligned_cols=287 Identities=11% Similarity=0.093 Sum_probs=163.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...|.--+++..++ +++.|+..|.+++|+-.+++....+ ..+..+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 344566667777887 6888999999999998887655321 234556677888999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeE--e-ecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe----eeeeecCCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLE--I-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHE 497 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~--l-~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~ 497 (1135)
.|+..|.|.++-+..+........ . ..|...|++++|++++. .+++|...|.|..-.+.+.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877433222111 1 23678899999999999 79999999999998887721 112233345
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-C-cEEEEEEcCC-----CCEEEEEecCCCCCCeEE
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-N-WCTMMAYSAD-----GTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~-~i~~~~~s~~-----~~~l~~~~~~~~~~~~i~ 570 (1135)
+.|-.+.... .+|+.++.-.. .+++++.......-+... + .-...+|-|. ...|+++- --.+
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR------PG~R 239 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR------PGLR 239 (726)
T ss_pred cceEEeeccc----ceehHhhhhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec------CCCc
Confidence 6666665432 23333322222 334444332211111111 1 1223344332 23444442 2367
Q ss_pred EEECC-CCeEEEEeeccc------CC--ceeE---------------EEec----CCCCEEEEEeCCCeEEEEECCCCce
Q 001159 571 EWNES-EGAIKRTYSGFR------KR--SLGV---------------VQFD----TTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 571 ~wd~~-~~~~~~~~~~~~------~~--~v~~---------------i~~s----~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
+|..+ .|..++++.-.. .. .+.+ +.|. -.+.++++-++-| |+|+|..+...
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceE
Confidence 78765 355444432100 00 0000 1110 1122344444444 88888876554
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhh
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
+.-.... + .|..+ +..++-|++-..|+.+++..+.+..+.+.
T Consensus 319 ~l~se~~-~--DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~l~ 360 (726)
T KOG3621|consen 319 YLWSEGG-H--DILDV--SHCGNEIFVLNLDRGLKVESVASRQRKLE 360 (726)
T ss_pred EEeecCC-C--ceeEE--eecCceEEEEecCCceeEEEeehhHHHHH
Confidence 4433221 1 34333 44466677777788888888776644443
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8e-05 Score=77.21 Aligned_cols=235 Identities=12% Similarity=0.097 Sum_probs=138.5
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC-CeEEE
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVS 942 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s 942 (1135)
+++.+..+.+....+.+|...|..++|||....++..++.+..|.|.|+++...+..+..| ..+++.+|.-|. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 7777777777767777788899999999954458899999999999999999999998888 789999998876 46667
Q ss_pred EcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEE------EECCCCcEEEEEecCeEEEEec--CCceeeccCCC
Q 001159 943 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV------QFHNDQTHLLVVHESQISVYDS--KLECSRSWSPK 1014 (1135)
Q Consensus 943 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~ 1014 (1135)
|-..|.|.|+|+...+...........- .+|..+ ...+.|.+|+.+ --....|++ ...+.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 7789999999998766433222221111 223332 233344444442 223456666 22222221111
Q ss_pred CCCCCCEEEEEEeeCCCEEEEEeCC-C------eEE-EEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEE
Q 001159 1015 DALPAPISSAIYSCDGLLVYAGFCD-G------AIG-VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1086 (1135)
Q Consensus 1015 ~~h~~~i~~~~~s~d~~~l~~~~~d-g------~I~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1086 (1135)
+..+...+++..+-.+.++..... - .|- --|-.+|..++..+...+. ..... ....-..+.+.+.++|
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~G--s~~~k-l~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFG--SKQTK-LSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccC--Ccccc-cccccceeccccccEE
Confidence 114455566666544554433322 1 111 1233456666554433210 00000 1111222333355555
Q ss_pred E-EEecCCcEEEEecCCCccccCC
Q 001159 1087 A-LGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1087 ~-sg~~dg~v~~W~~~~~~~~~~~ 1109 (1135)
+ +|++.+++.+||+.+.+....+
T Consensus 404 v~~gd~tn~lil~D~~s~evvQ~l 427 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFEVVQTL 427 (463)
T ss_pred EEecCCcceeEEeccchhheeeec
Confidence 5 5667789999999988854443
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00038 Score=78.28 Aligned_cols=222 Identities=16% Similarity=0.198 Sum_probs=122.9
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
...+..+.++|+|++++++++|...|+.....+.... +.-..++|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4567899999999999999999999999655544332 2445688987 554 66677788999974333333334
Q ss_pred ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEE
Q 001159 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 1000 (1135)
Q Consensus 921 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v 1000 (1135)
++.. ..+..|-. |.+|...+.+ .|.+||+++++.+.. ..- .+|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~-----i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRR-----IDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEE-----ESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeE-----Eec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 4322 23444433 8888877655 799999999875433 221 2378999999999999988889999
Q ss_pred EecCCc------------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccC
Q 001159 1001 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1068 (1135)
Q Consensus 1001 wd~~~~------------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
++.+.. .+...... ...|.+.+|..| -++.|. .. +++-+--.....++.+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT-~~-~lkYl~~Ge~~~i~~ld~---------- 233 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTT-SN-HLKYLVNGETGIIAHLDK---------- 233 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEEEETTEEEEEEE-SS----------
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEc-CC-eEEEEEcCCcceEEEcCC----------
Confidence 988555 33322221 457888888877 444443 33 666633222223333332
Q ss_pred CCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1069 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+.+.+ .+.| ..+.|.....|+.|..+.+.-.+
T Consensus 234 -~~yll--gy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 234 -PLYLL--GYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ---EEE--EEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -ceEEE--EEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 23433 3444 34688888999999988776544
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.11 E-value=5e-05 Score=86.65 Aligned_cols=180 Identities=18% Similarity=0.199 Sum_probs=133.5
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+..|+-...+..+|+.+.+......+ ..+.|+-+. .+++++.+|...|+|.+-|..+.+
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------------------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~ 208 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNV-------------------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFE 208 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeec-------------------cCCceEEEE--ecCcEEEeecccceEEeecCCcCc
Confidence 45566667788889988776543211 222344444 378999999999999999999876
Q ss_pred ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC---------CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCcc
Q 001159 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD---------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 442 ~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1135)
.++ ++.+|.+.|.++.. .|. .|++||. |..|+|||++.-+.+..+.-+.++ .-+.|+|.-. .
T Consensus 209 ~ih---t~~aHs~siSDfDv--~GN--lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-t 279 (1118)
T KOG1275|consen 209 TIH---TFDAHSGSISDFDV--QGN--LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-T 279 (1118)
T ss_pred eee---eeeccccceeeeec--cCC--eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-c
Confidence 665 88999999987666 466 7888874 567899999988877777656555 5567888755 6
Q ss_pred EEEEEEcCCeEEEEe---CcCCCc-eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 513 FIFSTAIDGKIKAWL---YDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 513 ~l~s~s~dg~i~iwd---~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.++.++..|...+-| +.+... ...+...+..+.++.+|++++.++.+- .+|.|.+|.-.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd----~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD----HEGHVNLWADR 342 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec----ccCcEeeecCC
Confidence 788899999999998 443322 233444555699999999999999984 58899999743
No 339
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.08 E-value=4.9e-06 Score=51.38 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhc
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Es 32 (1135)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00033 Score=79.46 Aligned_cols=147 Identities=15% Similarity=0.232 Sum_probs=105.1
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEEcc--cceeeEEec
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 922 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~~--~~~~~~~l~ 922 (1135)
..+|.++++++ ||+|.|-.+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-. ..+.-..+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 55899999999 8999999999888877765 4558999999993 256888999988 8777532 112112455
Q ss_pred CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 923 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
.-.|+|.++.|. |.++|-++.+| |+++|+.+++.+.. ++.+.....+..-...+.|.++.++ +.|-..+|+|..
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~ 231 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICS 231 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEE
Confidence 567899999994 88999999888 99999998875442 2222222222244567888887764 445555677777
Q ss_pred cC
Q 001159 1003 SK 1004 (1135)
Q Consensus 1003 ~~ 1004 (1135)
+.
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 63
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00071 Score=75.85 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=100.6
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.--++...+++++.|++.|.+.+|+-.. +........+ - .+.+....+|++..++
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~-~~~~~~~~vs~~e~lv 91 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--A-TGITCVRSVSSVEYLV 91 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--c-cceEEEEEecchhHhh
Confidence 5556777889999999999999986432 2222211111 1 5667778889999999
Q ss_pred EEEe-CCeEEEEECCCccE-----EEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce----eeEEecCcC
Q 001159 857 MSAS-GGKVSLFNMMTFKV-----MTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTKLKGHQ 925 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~-----~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~ 925 (1135)
|.|+ .|.|.|+-+..... +... +.|...|+|++|++ ++..+++|...|.|..-.+++.. ..+.+-.-.
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9998 68899998765321 1111 23778899999999 99999999999999998888721 122333345
Q ss_pred CCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 926 NRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+.|..|... ++.+|++...- ..+.+++.
T Consensus 171 s~IVQlD~~-q~~LLVStl~r--~~Lc~tE~ 198 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLTR--CILCQTEA 198 (726)
T ss_pred cceEEeecc-cceehHhhhhh--hheeecch
Confidence 677777765 44455544322 33444443
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.01 E-value=0.0044 Score=72.40 Aligned_cols=108 Identities=9% Similarity=0.110 Sum_probs=66.4
Q ss_pred CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC-----c-ee-EEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001159 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-----S-LG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-----~-v~-~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
..++.+.. ++.|+-+|..+|+.+..+...... . +. .+... ++..++.++.++.|+.+|.++|+.+...
T Consensus 62 g~vy~~~~----~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTS----HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCC----CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 34555432 678999999999988877543320 0 00 01111 2267888889999999999999999887
Q ss_pred eCCCCCCC---c-ceEEEcCCCCEEEEEE---------CCCcEEEEEcCCCchhh
Q 001159 627 DADGGLPA---S-PRLRFNKEGSLLAVTT---------SDNGIKILANSDGVRLL 668 (1135)
Q Consensus 627 ~~~~~~~~---v-~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~ 668 (1135)
........ + .+..+. +..++.++ .++.+..+|..+++...
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 65432100 1 111222 24555554 35788999999985443
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.01 E-value=0.0064 Score=70.03 Aligned_cols=251 Identities=13% Similarity=0.105 Sum_probs=140.5
Q ss_pred CeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.+....+||||++++++-+..| .+++.|+.+|+.+.. . + ....-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i--~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------I--ENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------E--EEEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------c--cccccceEEEeCCCCEE
Confidence 3446789999997666655555 599999999976532 0 1 11112349999999987
Q ss_pred EEEeCCC-----------eEEEEEeCCCCceeeeeEeecccCC--EEEEEEecCCCeEEEEEEcCC--CcEEEEEcCCC-
Q 001159 424 GVAFSKH-----------IVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAG- 487 (1135)
Q Consensus 424 as~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--v~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~- 487 (1135)
+....+. .|+.|.+.++..-. ...+...... ...+..++|++.++|.+.+.. ..+.+-|+..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7765332 37788877654321 1234443332 678899999996433333322 45788888764
Q ss_pred ---eeeeeecCCCCCe-eEEEeeccCCccEEEEE---EcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 488 ---RKQYTFEGHEAPV-YSVCPHHKESIQFIFST---AIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 488 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
.....+......+ ..+... ++ .+++.. ..++.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333333333333 333332 21 333333 2346677778877663 224444444322233334456666
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE--Ee--CCCeEEEEECCCCceE
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1135)
.... .++...|+++++..+.....+.....+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 3457789999998556666665555445666766666655443 22 3467888999887753
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.0012 Score=74.26 Aligned_cols=196 Identities=12% Similarity=0.120 Sum_probs=122.8
Q ss_pred eecccCCEEEEEEecCCCeEEEEEEcCC--CcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEE
Q 001159 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 449 l~~h~~~v~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw 526 (1135)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-..-.|+|++. .++++...||...+|
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334456778899999996433333333 359999999887655443 333344557877663 566677778875555
Q ss_pred --eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE
Q 001159 527 --LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 527 --d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
|+...... .+....+.-..-.|+|||++++..+ ++.+.-.|.+.|...+...+ +..... .-..-.|+|||++++
T Consensus 266 ~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~r-iT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTR-LTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCcce-ecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeE-eeccCC-CCcCccCCCCCCEEE
Confidence 65555532 2443333344778999999999886 45556678888888766533 332222 112677999999998
Q ss_pred EEeC-CCe--EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 605 AAGD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 605 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
..+. +|. |.+.|+.++..+..+.... ....-.|.+++..++..+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 8763 344 6667776665444443321 23456677888877766554
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.00 E-value=0.0059 Score=71.31 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=69.8
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC------cEE--EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCT--MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
..++.++.++.+...|..+++....+..... .+. .+++. ++..++.+.. ++.|+.+|.++|+.+..+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 5677788889999999988887766544322 000 11111 2245665543 788999999999999887
Q ss_pred ecccCC----cee-EEEecCCCCEEEEEe---------CCCeEEEEECCCCceEEEEeC
Q 001159 584 SGFRKR----SLG-VVQFDTTRNRFLAAG---------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 584 ~~~~~~----~v~-~i~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
...... .+. ...+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 654320 011 12222 24455543 368899999999998887754
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=0.00031 Score=77.66 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=91.8
Q ss_pred cceeeEEeecCCCCeeEEEEecCCCeEEEEE----eccc----eEEEEEcCCccccccCCceeecccccccchhhhhccC
Q 001159 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVG----TNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1135)
Q Consensus 335 ~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g----~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1135)
..-+.+.....+....++.||-...+.+.+- +.+| .-.+|++..++.... . + .--.
T Consensus 194 ~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-s--v-------------tsip 257 (545)
T PF11768_consen 194 GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-S--V-------------TSIP 257 (545)
T ss_pred CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-E--E-------------EEEe
Confidence 3445566666666778899987555444443 2344 345677665432111 0 0 0113
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....|.|++++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+|+|. ++++|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeec
Confidence 6678999999999999999999999999999875322 223445678999999999 899999999999999865
Q ss_pred Ce
Q 001159 487 GR 488 (1135)
Q Consensus 487 ~~ 488 (1135)
..
T Consensus 331 sp 332 (545)
T PF11768_consen 331 SP 332 (545)
T ss_pred Cc
Confidence 43
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.98 E-value=0.0046 Score=66.39 Aligned_cols=289 Identities=16% Similarity=0.105 Sum_probs=135.3
Q ss_pred EEEEEecCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
+.=+|++||+.|+.++. +|.-.+|-+ |+.+++..+..- + . ........++++.+.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTd-g--~-g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTD-G--P-GDNTFGGFLSPDDRA 94 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE----S--S--B-TTT-EE-TTSSE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECcc-C--C-CCCccceEEecCCCe
Confidence 34467889977766554 777777754 445554433211 1 0 111224667788888
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEe-cCCCcEEEEEeC----------------------CCcEEEEE
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGME----------------------DSSVQIYN 911 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~lasg~~----------------------dg~v~iwd 911 (1135)
++... +..|+-.|+.+++....+..+..-+....|. +.|+..++-.-. ...|.--|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 87665 5789999999988776676666666656664 325555443211 11345556
Q ss_pred cccceeeEEecCcCCCeEEEEEcCCCCeEEEEcC----CCc-EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 912 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA----DAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~----D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+.+|+....+. -..-+.-+-|||....++.=+. |.. -+||-+.+.......+.+... ...+..=-|+||
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~D 248 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPD 248 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TT
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCC
Confidence 77776544444 3345677889997655555433 332 477866653322221111111 245677789999
Q ss_pred CcEEEE-Ee-----cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC----------------eEE
Q 001159 987 QTHLLV-VH-----ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG----------------AIG 1043 (1135)
Q Consensus 987 g~~l~~-~~-----d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg----------------~I~ 1043 (1135)
|..|.. +. +..|.-+|. +++...... ......+.-++||++++-=+.|. .|+
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 998776 32 334555666 443322111 12345666678999776444442 567
Q ss_pred EEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1044 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1044 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
++++..+....-...........+...+.--...|+|++...|.+....|...||-+
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 788887765432221110100000011112247899944444556777777666644
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.98 E-value=0.025 Score=66.22 Aligned_cols=111 Identities=9% Similarity=0.010 Sum_probs=66.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC-cEE----------EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCT----------MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~----------~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|.-.|..+++.+..+..... .+. .+++ .+..++.+.. ++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 5677777788888888888877766543211 111 1122 1234555543 788999999999999
Q ss_pred EEeecccCCceeEEEecC--CCCEEEEEe------CCCeEEEEECCCCceEEEEeC
Q 001159 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..........-..+.-+| .+..++++. .+|.|+.+|.++|+.+.....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 876542110000111111 123455543 268999999999998877643
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.97 E-value=0.0005 Score=76.05 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=84.3
Q ss_pred CCceEEEEeec-CCCEEEEE----e-CCe----EEEEECCCccEEEE--E-eCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 841 EESAACIALSK-NDSYVMSA----S-GGK----VSLFNMMTFKVMTM--F-MSPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 841 ~~~i~~l~~s~-dg~~la~~----~-dg~----i~vwd~~~~~~~~~--~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
+....++.||. +...+.+. + +|. -.+|++...+..+. . -.....|.|++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 55567888887 33344433 1 333 56777765543322 1 13667899999999 88999999999999
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCc
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
.+||...+.. .+....-.++.++|+|+|..+++|+.-|.+.+||+.-..
T Consensus 284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999876633 233344567899999999999999999999999997644
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0002 Score=81.07 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=130.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceec
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
.+.++|++++. +++|-|+.+|.|++++... .. .....|+.. .-+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35678888864 7999999999999999763 33 444446554 5689999999999999999998877433
Q ss_pred eeeeecCCCCCCCCCCceEEEECCC-----CcEEEEEecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEE
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVY 1034 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~ 1034 (1135)
+.-.+ .++..++++|| .+++++|+...+.++.- -++.... ..+...++|.++.|- |.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEec--CcEEE
Confidence 22221 46789999999 56777765544888776 1222211 112227899999985 55777
Q ss_pred EEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1035 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1035 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
=++.+ .|+|||+.+++.+..+.+....+ -....+-.+.|.+ .+.|+.| ..-+|++..++.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 76555 59999999999999888664221 1123344677776 3567664 444788888873
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00078 Score=75.62 Aligned_cols=203 Identities=11% Similarity=0.063 Sum_probs=117.5
Q ss_pred cccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEecc---ceEEEEEcCCccccccCCceeecccccccchhhhhcc
Q 001159 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV---GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1135)
Q Consensus 329 ~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1135)
++..|...............+..-+|+|+++.+....-.. ..+.++++++++.....
T Consensus 175 l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-------------------- 234 (425)
T COG0823 175 LALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-------------------- 234 (425)
T ss_pred EEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------
Confidence 3344444333333334667888999999999755553333 35999999988754321
Q ss_pred CCCcceEEEEEcCCCCeEEEEeC-CCe--EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--EE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFS-KHI--VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--IK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~-dg~--i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~--i~ 480 (1135)
.-.+.-...+|||||++||.+.. ||. |.++|+.++... .+..-.+.-+.-.|+|||+. ++++.+..|. |.
T Consensus 235 ~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~ 309 (425)
T COG0823 235 NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIY 309 (425)
T ss_pred ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce----ecccCCccccCccCCCCCCE-EEEEeCCCCCcceE
Confidence 12333456789999999888754 554 666677765522 23333333347789999996 3344455554 44
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc-CCe--EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+.|++.+.. ..+....+.-..-.|+|+ |++++..+. +|. |.+.|+.+..... ............+.++++.++
T Consensus 310 ~~~~~g~~~-~riT~~~~~~~~p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 310 LYDLEGSQV-TRLTFSGGGNSNPVWSPD--GDKIVFESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EECCCCCce-eEeeccCCCCcCccCCCC--CCEEEEEeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEE
Confidence 555444433 333322222224456554 477766664 344 5666665555422 222333344567888888888
Q ss_pred EEe
Q 001159 558 SCG 560 (1135)
Q Consensus 558 ~~~ 560 (1135)
..+
T Consensus 386 ~~s 388 (425)
T COG0823 386 FSS 388 (425)
T ss_pred Eec
Confidence 665
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.002 Score=72.56 Aligned_cols=222 Identities=11% Similarity=0.071 Sum_probs=119.5
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
........+.++|+|+.+++ +.||.-.|+..... +.. ..+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RNK-----AFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EEE-----EEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---ccc-----ccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 34455789999999999999 56677778874332 211 123455688998664 6667668899997433
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~ 565 (1135)
+.+....+.. ...+..+-. |..|...+ ++.|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3333233432 223444432 35555554 448999999998888877754 388999999999999886
Q ss_pred CCeEEEEECCCC---------e--EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc--eEEEEeCCCCC
Q 001159 566 ESHLVEWNESEG---------A--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGL 632 (1135)
Q Consensus 566 ~~~i~~wd~~~~---------~--~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 632 (1135)
+..+.+++.... - ....+..... .|.+.+|..+ .++-.+.. .++.+ -.|+ .+..+. .
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~-~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld---~- 233 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISE-RIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD---K- 233 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S---SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S---S-
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEecc-eeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC---C-
Confidence 445777764432 0 2222222122 6888889866 44444443 67663 3333 233332 2
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++-+.+.+..+.+.....++.+..+.+...
T Consensus 234 -~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 234 -PLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -ceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 5677888887788999999999999987644
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0049 Score=68.52 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=134.3
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccc------c------------CCceeecccccc------cchhhhh
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------H------------KPFKVWDISAAS------MPLQNAL 403 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 403 (1135)
.|+.+.|+++.. =||+|...|.|.||.....+.-. . ..-.+-|+.... .-.+..+
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 689999999976 47889999999999886543221 0 011122222211 1233445
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeec------ccCCEEEEEEec-----CC-CeEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH-----PN-KQLCIV 471 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~-----d~-~~~~l~ 471 (1135)
+....++|++++.| |=-++|+|..+|.+.|.|++....+... .+.. ....|+++.|+- |+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 56668999999998 5559999999999999999877655431 2222 234688898872 22 125788
Q ss_pred EEcCCCcEEEEEcCC---Ceee----eeecCCCCCeeEEEeeccCCc-------------------cEEEEEEcCCeEEE
Q 001159 472 TCGDDKMIKVWDVVA---GRKQ----YTFEGHEAPVYSVCPHHKESI-------------------QFIFSTAIDGKIKA 525 (1135)
Q Consensus 472 s~~~d~~i~iwd~~~---~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~s~dg~i~i 525 (1135)
.|...|.+.+|.+.- +.-. .....+.++|..+..-....| .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 999999999998751 2211 112246677777663211111 23455566888999
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEc-----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC---CceeEEEec
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~i~~s 597 (1135)
+..-+.+..............+.+- ..+..|++-. .+|.|+++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9887766655444222233334442 2344455544 388999999999888877766431 123345567
Q ss_pred CCCCEEEEEe
Q 001159 598 TTRNRFLAAG 607 (1135)
Q Consensus 598 ~~~~~l~~~~ 607 (1135)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555443
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.008 Score=66.89 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=139.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce----------------------------------------eeeeEe
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------------------------------------RQHLEI 449 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~l 449 (1135)
.|+++.|+++...||+|...|.|.||.....+.. .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4899999999999999999999999866432111 112223
Q ss_pred ecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee--ecC------CCCCeeEEEee---ccCCc---cEEE
Q 001159 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 515 (1135)
Q Consensus 450 ~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~------h~~~v~~i~~~---~~~~~---~~l~ 515 (1135)
+...++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 4457889999998666 899999999999999988877764 222 23467788776 23333 5788
Q ss_pred EEEcCCeEEEEeCcC-CCcee------EecCCCCcEEEEE-EcCC---------------------CCEEEEEecCCCCC
Q 001159 516 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1135)
.|...|.+.+|.+.- ..... ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999997752 11111 1113444444443 3221 11444544 5
Q ss_pred CeEEEEECCCCeEEEEeecccCCceeEEEec-----CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCcceEE
Q 001159 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1135)
..++++...+.+.........- ....+++- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 6799999888776554442211 22333442 2456778888999999999999999988876421 12355678
Q ss_pred EcCCCCEEEEEECCCcEEEEEc
Q 001159 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++++|..++..+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 88999877666544 4444443
No 355
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.85 E-value=2.2e-05 Score=52.86 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001159 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1135)
Q Consensus 4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1135)
.+.++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999974
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.0097 Score=61.19 Aligned_cols=191 Identities=9% Similarity=0.110 Sum_probs=110.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...+..++|+|+.+.|+|+....+.|...+.+ |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999999999888874 66554311 222 345778888888887777
Q ss_pred EeCCCeEEEEEeCCCCc---eeee--eEee---cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---Ceeeee--
Q 001159 426 AFSKHIVHLYTYNPTGE---LRQH--LEID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~---~~~~--~~l~---~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~-- 492 (1135)
.-.++.+.+.++..... .... ..+. .++..+..++|.+.++. |+.+-......++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76789999999854321 1111 1111 34567999999999885 44455555666666543 211111
Q ss_pred ------ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---------CcEEEEEEcCCCCEEE
Q 001159 493 ------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1135)
Q Consensus 493 ------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~ 557 (1135)
.......+.+++++|.. +++++.......|..+| ..++.+..+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 11234568899999874 47888888888999998 4455444333332 2577899999997666
Q ss_pred EE
Q 001159 558 SC 559 (1135)
Q Consensus 558 ~~ 559 (1135)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.0053 Score=63.10 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=113.0
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 916 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~- 916 (1135)
...+..++|.|+.+.|++.. .+.|.-.+. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 45699999999876555555 578888886 47888876543 35688899986 67666655568999999984321
Q ss_pred -----eeEEec-----CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC---CceeceeeeecCCCCCCCCCCceEEEE
Q 001159 917 -----VKTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 917 -----~~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
....+. .+...+-+|+|.+.++.|+.+-...-..++.+.. .....................+..+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 112221 2445689999999988888887776677776654 111111111111101111145789999
Q ss_pred CCCCcEEEE-E-ecCeEEEEecCCceeeccCCCCCC------CCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 984 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 984 s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
+|....|.+ + ....|.++|.+++.+..+....+. -..-..|+|.++|++.++ ++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 998876666 5 467788888877766554333211 124678999999976655 466666655
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.015 Score=65.85 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=110.2
Q ss_pred EEeecCCCEEEEEeCC------------eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 847 IALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
++.+|.|..+|...|. .|+||+.. |+.+..+.=..+.|.++.|+. + ..|++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence 4556666666666543 59999975 556666543448999999987 4 4566778999999999863
Q ss_pred ce------eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC---CCCCceE-EEEC
Q 001159 915 DE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS---PLVGETK-VQFH 984 (1135)
Q Consensus 915 ~~------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~-~~~s 984 (1135)
.. .+....-....+....+..+|-.+.+ .++.+.+-+--... ..........+... ....... ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~-~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEP-VKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCcccc-chhhccccCCCcccccccccccccceEee
Confidence 32 11111112223333344445533333 34444333211111 01011111111000 0001111 3355
Q ss_pred CCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 985 NDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 985 ~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
.+....+. ..++.+.+.+. .... .. ..+++..|++||+|++||.-..+|.+.|...+-.+.++++...
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 55554444 45555654443 2111 11 1468999999999999999999999999988777777766643
No 359
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.73 E-value=3.2e-05 Score=59.85 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.5
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhccCH
Q 001159 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1135)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1135)
+..++++|+.|+|+.|+..+..........-+ .+.|.|++|+|+|++..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999888654322222 49999999999999998764
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.076 Score=59.76 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=174.1
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
......+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..+++
T Consensus 21 ~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v 81 (381)
T COG3391 21 NKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAV 81 (381)
T ss_pred cEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceee
Confidence 334444443346778889999965555544433444444331111000 0001134557889
Q ss_pred cCCCCeE-EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCeeeeeec
Q 001159 417 GPDGLML-GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 417 spd~~~l-as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~ 494 (1135)
++++..+ +....++.|.+.|..+........ .+. ....++++++++.++++-.. .++++.+.|..+++.+.+..
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 9988854 444556889999977765544221 122 56789999999864444333 47899999999998888765
Q ss_pred CCCCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCcCCCcee-E---ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 495 GHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.-..+ ..+++.|++ ..+ ++-..++.|.+.|........ . ..........+.++++|.++++.-.. +.++.+
T Consensus 158 vG~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v 233 (381)
T COG3391 158 VGNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNV 233 (381)
T ss_pred cCCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceE
Confidence 44455 788887765 544 444588999999966554432 0 11222345678899999988766531 124689
Q ss_pred EEEECCCCeEEEE-eecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCC-CCCcceEEEcC
Q 001159 570 VEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNK 642 (1135)
Q Consensus 570 ~~wd~~~~~~~~~-~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~ 642 (1135)
...|..++..... ...... ....+..+|+|..+++.. ..+.+.+.|..+............ ...+..+++.+
T Consensus 234 ~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999998887765 333332 345688999999998874 458899999998887776653322 11234444444
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.019 Score=64.50 Aligned_cols=208 Identities=15% Similarity=0.161 Sum_probs=142.1
Q ss_pred ceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEccccee
Q 001159 843 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEV 917 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~---dg~v~iwd~~~~~~ 917 (1135)
....+++++++..+.... ++.|.+.|..+.+......--. ....++++| +++.+.++.. ++++.+.|..+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345788899888666555 6899999988877776664222 667899999 6655555544 68999999999988
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEE-cCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe--
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-- 994 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-- 994 (1135)
+.....-..+ ..++++|+|+.+..+ ..++.|.+.|.+...... .. .............++++|+|.++.+..
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEecc
Confidence 8775433334 899999999955544 578999999977755321 00 000011113457899999999877742
Q ss_pred c--CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCceeeeeeCCc
Q 001159 995 E--SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 995 d--~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
+ +.+.+.|. .+.....-.... -. ....+.++|+|+++.+... .+.+.+-|..+......+...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 2 57888888 444333312211 02 3456899999999887744 488999999998877765543
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.61 E-value=0.027 Score=60.63 Aligned_cols=236 Identities=14% Similarity=0.122 Sum_probs=134.6
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCC
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 862 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg 862 (1135)
..++.|++|+.+| +.++++.. ......+ . + ...|..+...++-+.+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~-------------------~~~~~~i---~----~-~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD-------------------PSKPTRI---L----K-LSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC-------------------CccceeE---e----e-cceEEEEEEecccCEEEEEcCC
Confidence 4567789998888 77776510 0000000 0 2 4459999999999988888899
Q ss_pred eEEEEECCCccEEEEE--------------eCCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEEcccc-----eeeEEe
Q 001159 863 KVSLFNMMTFKVMTMF--------------MSPPPAATFLA--FHPQDNNIIAIGMEDSSVQIYNVRVD-----EVKTKL 921 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~--------------~~h~~~v~~l~--~sp~~~~~lasg~~dg~v~iwd~~~~-----~~~~~l 921 (1135)
.+.++++......... ......+..++ -...+...|+++. .+.|.+|..... +..+++
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence 9999999865443311 11223444444 1121445555544 458988887653 345555
Q ss_pred cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC----CCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 922 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA----GRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 922 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
.- .+.+.+++|. ++.++.+..++ ..+.|+.++............ .......++ .+.--+++.+|++ .+..
T Consensus 136 ~l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Ll~-~~~~ 209 (275)
T PF00780_consen 136 SL-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL-GIFQLSDNEFLLC-YDNI 209 (275)
T ss_pred Ec-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCce-EEEEeCCceEEEE-ecce
Confidence 53 4678999998 55676666555 888999976532211111100 000000122 2323344555554 3444
Q ss_pred EEEEecCCceee-ccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 998 ISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 998 v~vwd~~~~~~~-~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
-...|..|+..+ ..... .....++++. ..||++.+. +.|.||++.+++++..+...
T Consensus 210 g~fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 210 GVFVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 444555554333 11111 2345566663 347776544 56999999999999887744
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.58 E-value=0.25 Score=58.00 Aligned_cols=192 Identities=12% Similarity=0.083 Sum_probs=118.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCC-CCeeE----------EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYS----------VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~----------i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|+-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+...|..+++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778889999999999887764311 11111 111 1246778889999999999998887655
Q ss_pred cCCCC----cEEEEEEcCCCCEEEEEecC--CCCCCeEEEEECCCCeEEEEeecccCC----------------------
Q 001159 538 DAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKR---------------------- 589 (1135)
Q Consensus 538 ~~~~~----~i~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~---------------------- 589 (1135)
..... .+.+.-.--++ .++++... ...++.|..+|.++|+.+..+..-...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 43211 11111011134 44444321 112678999999999988775432110
Q ss_pred --------ce-eEEEecCCCCEEEEEeCC-----C-----------eEEEEECCCCceEEEEeCCCCC-------CCcce
Q 001159 590 --------SL-GVVQFDTTRNRFLAAGDE-----F-----------QIKFWDMDNMNMLTTVDADGGL-------PASPR 637 (1135)
Q Consensus 590 --------~v-~~i~~s~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 637 (1135)
.+ ..+++++..+.++.+... + .|.-.|+++|+....++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 11 135677777777765521 2 5777899999988877654331 11112
Q ss_pred EEEcCCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 638 LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 638 ~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
+.+..+|+ .++.++.+|.+.+.|-.+++
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 23334666 78899999999999999993
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.016 Score=61.91 Aligned_cols=217 Identities=16% Similarity=0.138 Sum_probs=124.6
Q ss_pred EeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec---
Q 001159 848 ALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--- 922 (1135)
Q Consensus 848 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--- 922 (1135)
.|.++...|.-.+ .+.|.-|+..+++. ..+..+ +.+.++..-. .+..|+++. .-+++++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 5667777666665 68899999886644 334323 3344444433 344454442 337777777665533322
Q ss_pred -Cc-CCCeEEEEEcCCCCeEEEEcC-----C----CcEEEEeCC-CCceeceeeeecCCCCCCCCCCceEEEECCCCcEE
Q 001159 923 -GH-QNRITGLAFSPTLNALVSSGA-----D----AQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 990 (1135)
Q Consensus 923 -~h-~~~i~~l~~s~d~~~l~s~~~-----D----~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 990 (1135)
+. ....+.+...|+|.+.++... . ..-.+|.++ .+... ....++. ..-+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-----~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-----RLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-----EeecCcE---EecCceEECCCCCEE
Confidence 11 234667888999988876554 1 112455554 22211 1111111 234689999999887
Q ss_pred EEE--ecCeEEEEecC---Cceeec--cCCCCCCCCCEEEEEEeeCCCEEEEEeCCC-eEEEEECCCceeeeeeCCceec
Q 001159 991 LVV--HESQISVYDSK---LECSRS--WSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYI 1062 (1135)
Q Consensus 991 ~~~--~d~~v~vwd~~---~~~~~~--~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~ 1062 (1135)
..+ ..+.|.-|++. +..-.. +.......+..-.++...+|.+-+++-.+| .|.+|+.+ |+++..+....
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-- 254 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-- 254 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--
Confidence 774 45777777663 111111 111111245566788888998776555554 89999999 99998877553
Q ss_pred cccccCCCCccEEEEecCCCCCEEEE
Q 001159 1063 PTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..+.+++|-..+.+.|..
T Consensus 255 --------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 --------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred --------CCCccceEeCCCcCEEEE
Confidence 334466775444444443
No 365
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.56 E-value=2.9e-05 Score=85.17 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=127.7
Q ss_pred CeeEEEEecCCC-eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEEE
Q 001159 348 NVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 348 ~V~~v~~sp~g~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las 425 (1135)
.+.|++++-+.+ -++++|..+|.|.+-.+.....- ......+|....++++|++ |...||.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAa 120 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAA 120 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHh
Confidence 455666544332 58999999999999887643221 0112456888999999999 6778888
Q ss_pred Ee----CCCeEEEEEeCCCCc-eeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeecCCCC
Q 001159 426 AF----SKHIVHLYTYNPTGE-LRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA 498 (1135)
Q Consensus 426 ~~----~dg~i~iwd~~~~~~-~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~ 498 (1135)
|- .|..+.|||+.++-. .+....+.+ -.....+++|..+.+ ++.+|...+.++++|++... ....+ .+.
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk 196 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NTK 196 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hhh
Confidence 73 366799999988611 111112222 334566899997777 78899989999999987322 11222 233
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEe-CcCCCceeE-ecCCC----CcEEEEEEcCCCCE-EEEEecCCCCCCeEEE
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVD-YDAPG----NWCTMMAYSADGTR-LFSCGTSKEGESHLVE 571 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~-~~~~~----~~i~~~~~s~~~~~-l~~~~~~~~~~~~i~~ 571 (1135)
.+..+.+.|-. ++++++-. ||.|.+|| ...-+.... +.... ..+..++|.|...- +++... ..++|++
T Consensus 197 ~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrl 271 (783)
T KOG1008|consen 197 YVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRL 271 (783)
T ss_pred hcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEE
Confidence 45555665532 25666655 99999999 443333222 21111 25889999996553 344432 3678999
Q ss_pred EECC
Q 001159 572 WNES 575 (1135)
Q Consensus 572 wd~~ 575 (1135)
+|+.
T Consensus 272 ydi~ 275 (783)
T KOG1008|consen 272 YDIC 275 (783)
T ss_pred eccc
Confidence 9875
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.54 E-value=0.0043 Score=72.86 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=108.7
Q ss_pred CceEEEEeecCCCEEEEEe-------CC--eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--------
Q 001159 842 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 904 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-------- 904 (1135)
..+.+.++||||+.+|... |+ .|.+++.. +.. ..+. .....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt-~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL-EGHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee-cCCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4677899999999888664 32 46666653 333 3332 122488899999 77777766432
Q ss_pred ----CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEE---EeCCCCceeceeeeecCCCCCCCCCC
Q 001159 905 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 977 (1135)
Q Consensus 905 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1135)
+.+.+.+++.++... ...+.|..+.|||||++++... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2345799999999999888766 467776 443444311111111111111 23
Q ss_pred ceEEEECCCCcEEEEEecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q 001159 978 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1043 (1135)
Q Consensus 978 v~~~~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~ 1043 (1135)
+..+.|..++.+++...++...+|.+ .+.....+ .......++.+++-+++ -++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 57899999999765554444445655 54443332 22223567778887763 355556666433
No 367
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.47 E-value=7.3e-05 Score=82.13 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=108.2
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce--eEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEEC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
..+.|+++....+...++.|..+|.|-+-.++..... .....+....++++|++ |.+.|++|-...+.+..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3455666555555467888888999998877654432 23445566889999988 55677776544456778999999
Q ss_pred CCC--eE--EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCcceEEEcC-CCCEEE
Q 001159 575 SEG--AI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1135)
Q Consensus 575 ~~~--~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 648 (1135)
.++ .+ -..|.+.......+++|..+.+.+.+|.....+.++|++.. .....+. ...+..+.++| .+.+++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCcee
Confidence 876 22 12233322225668899988899999988889999998832 2222222 11467788888 777887
Q ss_pred EEECCCcEEEEEc
Q 001159 649 VTTSDNGIKILAN 661 (1135)
Q Consensus 649 ~~~~dg~i~iwd~ 661 (1135)
+-. ||.|.+||.
T Consensus 213 s~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 213 SNS-DGDIAIWDT 224 (783)
T ss_pred ccc-cCceeeccc
Confidence 665 889999994
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.057 Score=54.30 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=137.6
Q ss_pred EEEeecCC-CEEEEEe-CCe-EEEEECCCccEEEEEeCCCCC--eEEEEEecCCCcEEEEEeCC-----CcEEEEEcccc
Q 001159 846 CIALSKND-SYVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 915 (1135)
Q Consensus 846 ~l~~s~dg-~~la~~~-dg~-i~vwd~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~ 915 (1135)
.++|+|.- +-++.+. -|+ ..++|..+.+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 57888854 4455665 455 778999888776665433222 22346999 89988765433 78999998854
Q ss_pred -eeeEEecCcCCCeEEEEEcCCCCeEEEEcC------C------------CcEEEEeCCCCceeceeeeecCCCCCCCCC
Q 001159 916 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 976 (1135)
Q Consensus 916 -~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+.+.++..|.-..-.+.+.+||+.|+.+.. | -++.+.|..+++.+.+..+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 566778888888889999999999987743 1 1244445445554433332211111 4
Q ss_pred CceEEEECCCCcEEEEEe------cCeEEEEec-CCceeeccCCCC----CCCCCEEEEEEeeCCCEEEEEeCC-CeEEE
Q 001159 977 GETKVQFHNDQTHLLVVH------ESQISVYDS-KLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGFCD-GAIGV 1044 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~~------d~~v~vwd~-~~~~~~~~~~~~----~h~~~i~~~~~s~d~~~l~~~~~d-g~I~v 1044 (1135)
.+..++..+||..++.+. |----|=-. .++.+..+.... ....-|-+++..-+..+++..+.. +...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 678888888888777641 111111111 222222211110 012346778887666666655554 45788
Q ss_pred EECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEe
Q 001159 1045 FDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~ 1099 (1135)
||..+|..+....... ..-++.. .+-+.+ .+.+|.+.++.
T Consensus 307 ~da~tG~vv~~a~l~d----------aaGva~~----~~gf~v-ssg~G~~~~~s 346 (366)
T COG3490 307 WDAATGAVVSEAALPD----------AAGVAAA----KGGFAV-SSGQGRIIFYS 346 (366)
T ss_pred EEcCCCcEEecccccc----------cccceec----cCceEE-ecCCceEEecc
Confidence 9999999886544321 1111221 233444 46678888774
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.46 E-value=0.13 Score=59.19 Aligned_cols=244 Identities=12% Similarity=0.130 Sum_probs=128.6
Q ss_pred cceEEEEEcCCCCeEEEE-eCCC----eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC--------
Q 001159 409 ISVNRCVWGPDGLMLGVA-FSKH----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-------- 475 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~-~~dg----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-------- 475 (1135)
..+..+++||||+++|.+ +..| .++++|+.+++.+.. .+..- ....+.|.+|++. ++.+...
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence 345578999999999986 3333 599999999865432 12111 1223999999985 3444422
Q ss_pred --CCcEEEEEcCCCeee--eeecCCCCC--eeEEEeeccCCccEEEEEEc-C---CeEEEEeCcCC----CceeEecCCC
Q 001159 476 --DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDYDAPG 541 (1135)
Q Consensus 476 --d~~i~iwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~s~-d---g~i~iwd~~~~----~~~~~~~~~~ 541 (1135)
...|+.|.+.++... ..+...... ...+..+. ++++++..+. . ..+.+.|+... .....+....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 234788888776432 344444443 34555554 4577665432 2 34677777664 2233333333
Q ss_pred -CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccC-CceeEEEecCCCCEEEEE-eCC--CeEE
Q 001159 542 -NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDE--FQIK 613 (1135)
Q Consensus 542 -~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~i~~s~~~~~l~~~-~~d--g~i~ 613 (1135)
.....+... +..++..+..+..++.|...++..... ...+..+.. ..+..+.. .+++|+.. ..+ ..|+
T Consensus 277 ~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 333333333 443333332334567888888887652 223433333 13444444 35555553 333 3688
Q ss_pred EEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE--EC--CCcEEEEEcCCC
Q 001159 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT--TS--DNGIKILANSDG 664 (1135)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~--dg~i~iwd~~~~ 664 (1135)
++++..+.....+..... ..|..+...+++..+... +. -+++..||+.++
T Consensus 353 v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 899984555555554432 245555555655544332 22 357888888877
No 370
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0015 Score=68.60 Aligned_cols=111 Identities=9% Similarity=0.136 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHH
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~ 75 (1135)
+.|..+|..++...|+...+..|-+|+|...+ +.++.+++..|+-.-|++.+......-... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 44689999999999999999999999998752 678888999999999988887753222222 2248899
Q ss_pred HHHHHHHHHHhccCHH--HHHHHHHhccccccccCHHHHHHHHH
Q 001159 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQ 117 (1135)
Q Consensus 76 i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1135)
+..+.|++++..|... +|+...|..++|+...+....+.+-.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999999887 99999999999997766666666633
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.37 E-value=0.1 Score=56.14 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=129.1
Q ss_pred CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001159 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1135)
Q Consensus 357 ~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd 436 (1135)
.++ .|+.|+.+| +.+++......... ..+...|..+...|+-+.|++-+ |+.+.+++
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~--------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTR--------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCcccee--------------------EeecceEEEEEEecccCEEEEEc-CCccEEEE
Confidence 445 467788888 89999832221110 11333499999999887776664 49999999
Q ss_pred eCCCCceeeeeE-----------eecccCCEEEEE--EecCCCeEEEEEEcCCCcEEEEEcCCC-----eeeeeecCCCC
Q 001159 437 YNPTGELRQHLE-----------IDAHVGGVNDIA--FAHPNKQLCIVTCGDDKMIKVWDVVAG-----RKQYTFEGHEA 498 (1135)
Q Consensus 437 ~~~~~~~~~~~~-----------l~~h~~~v~~v~--~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~h~~ 498 (1135)
+..-........ .......+...+ =...+.. .|+.+- .+.|.+|..... +..+.+. -..
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE-cCC
Confidence 876433221100 011223344444 1123332 444443 558888887653 3445554 457
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC------------CcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------NWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+.+++|.. +.++.|.. +...+.|+.++.....+.... .++..+.. +++.+|++. +
T Consensus 140 ~~~~i~~~~----~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~------~ 207 (275)
T PF00780_consen 140 PPSSIAFLG----NKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY------D 207 (275)
T ss_pred CcEEEEEeC----CEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe------c
Confidence 788898873 46666664 447788888665544332211 12333333 445666553 2
Q ss_pred CeEEEEECCCCeEEE--EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 567 SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 567 ~~i~~wd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
. +-++=-..|+..+ .+.-.. ....+++. ..++++.+. +.|.||++.+++.++++...
T Consensus 208 ~-~g~fv~~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 N-IGVFVNKNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred c-eEEEEcCCCCcCcccEEEcCC--chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 2 3333333454443 222211 34455553 457777665 45999999999999998754
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.36 E-value=0.036 Score=61.12 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=104.2
Q ss_pred eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----CCeEEEEeC---------C-CeEEEE
Q 001159 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS---------K-HIVHLY 435 (1135)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~las~~~---------d-g~i~iw 435 (1135)
.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|+. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5778887777655432221 0012223334444443 468888753 2 899999
Q ss_pred EeCCC----CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-eeeeec-CCCCCeeEEEeeccC
Q 001159 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFE-GHEAPVYSVCPHHKE 509 (1135)
Q Consensus 436 d~~~~----~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~i~~~~~~ 509 (1135)
++... ..++.... ....++|++++-. .+ .|+.+. .+.|.+|++...+ ....-. .....+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99984 23433323 2457889999877 33 333333 4789999998877 332221 122356666543 3
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCc-ee--EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
++++.|...+.+.++.++.... .. .......+++++.|-++++.++++ |.++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~----D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG----DKDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE----ETTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE----cCCCeEEEEEEC
Confidence 6899999999988886654333 22 223345578999998777766655 347788877664
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.32 E-value=0.029 Score=61.82 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=105.1
Q ss_pred CeEEEEECCCccEEEEEeCC-CCCeEEEEE---ecC---CCcEEEEEeC----------CCcEEEEEcccc----eeeEE
Q 001159 862 GKVSLFNMMTFKVMTMFMSP-PPAATFLAF---HPQ---DNNIIAIGME----------DSSVQIYNVRVD----EVKTK 920 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~---sp~---~~~~lasg~~----------dg~v~iwd~~~~----~~~~~ 920 (1135)
..|++.|..+.+.+.++.-. ...+.+++. ..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46899999888887776433 334555543 321 1578888863 289999999984 12222
Q ss_pred e--cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCc-eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecC
Q 001159 921 L--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE-KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HES 996 (1135)
Q Consensus 921 l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~ 996 (1135)
+ ....++|++|+-- .+.++++. .+.|.+|++...+ ......... +...+.....+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~---------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDS---------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-B---------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCEEEEee--cCEEEEEEccCcccchhhheecc---------eEEEEEEeccccEEEEEEccc
Confidence 1 2357889999876 44444443 4779999999877 222212111 12333333445577776 356
Q ss_pred eEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 997 QISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 997 ~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
.+.++.. ....+..+.. +.....++++.|-+|+..+++++.+|.+.++....
T Consensus 150 sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 6777654 3443333222 22255688999987778999999999999999873
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.074 Score=53.52 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=68.8
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc-eeEEEecCCCCEEEEEeC-----CCeEEEEECC
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS-LGVVQFDTTRNRFLAAGD-----EFQIKFWDMD 618 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~~~~~-----dg~i~iwd~~ 618 (1135)
..++++|....-+.... .......++|...++.+.++....+.. .-.-.||+||.+|++.-. -|.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 35678886655443322 113346788988887776665444322 223569999999998653 3789999988
Q ss_pred CC-ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 619 NM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 619 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
.+ ..+..+..++- ....+.+.+||+.++.+. |-|..
T Consensus 149 ~~fqrvgE~~t~Gi--GpHev~lm~DGrtlvvan--GGIet 185 (366)
T COG3490 149 EGFQRVGEFSTHGI--GPHEVTLMADGRTLVVAN--GGIET 185 (366)
T ss_pred cccceecccccCCc--CcceeEEecCCcEEEEeC--Cceec
Confidence 53 34455554432 346789999999988763 34443
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.032 Score=66.57 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=98.9
Q ss_pred CCcEEEEE-eCCCcEEEEEcccceeeEEecCcCCC-eEEEEEcC-----CCCeEEEEcCCCcEEEEeCCCCceeceeeee
Q 001159 894 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSP-----TLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 966 (1135)
Q Consensus 894 ~~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~-----d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 966 (1135)
+.++|..- .....|+-.|++.|+.+..+..|... |..++-.. +....+.|-.+..+..||..-... ..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence 44555443 35678999999999999999987754 55554321 123345566677899999885431 1111
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
...........-++++-+.+|..++.+.+|.||+||-.+....+..+ +.+.+|..|..+.||++|++. .+..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILAT-CKTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEe-ecceEEEEE
Confidence 10001111245677888888877666899999999985544444433 337899999999999998855 567888888
Q ss_pred CC
Q 001159 1047 AE 1048 (1135)
Q Consensus 1047 ~~ 1048 (1135)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.18 E-value=0.051 Score=64.05 Aligned_cols=162 Identities=14% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCCeEEEEEecCCCcEEEEEe------CCC--cEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC-CcEEEE
Q 001159 882 PPAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMW 952 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~iw 952 (1135)
...+...++|| +|+.+|... .|. .|.+++. .+.......+ ...+.-.|+|||+.|++.+.. ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4555554 2333222333 247889999999888877533 222222
Q ss_pred eCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec---CCceeeccC---CCCCCCCCEEEEEE
Q 001159 953 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRSWS---PKDALPAPISSAIY 1026 (1135)
Q Consensus 953 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~---~~~~~~~~~---~~~~h~~~i~~~~~ 1026 (1135)
+-.....+....+............|..+.|||||+.++...+++|.|--+ .+.....-. ....-...+.++.|
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 221111111000000000001124689999999999999966788877433 222211100 01111334688999
Q ss_pred eeCCCEEEEEeCCCeEEEEECC
Q 001159 1027 SCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1027 s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
..++.++ ++..++...+|.++
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEe
Confidence 9999965 55555555555543
No 377
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.18 E-value=1 Score=54.85 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=114.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCC--------eeEEEee--------------ccCCccEEEEEEcCCeEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPH--------------HKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~--------------~~~~~~~l~s~s~dg~i~iw 526 (1135)
.++.++.++.|.-.|..+|+.+.++...... ...+++. |...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4566666777777777777777665432110 1112221 11123578889999999999
Q ss_pred eCcCCCceeEecCCCC------------cEEEEEEcC--CCCEEEEEecCCC------CCCeEEEEECCCCeEEEEeecc
Q 001159 527 LYDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~------------~i~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
|.++++....+..... ....+.-+| .+..+++++...+ ..+.|+-+|.++|+++..+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432111 000111112 1345555543222 2688999999999999887531
Q ss_pred c---------C-------Cce-eEEEecCCCCEEEEEe------------------CCCeEEEEECCCCceEEEEeCCCC
Q 001159 587 R---------K-------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 587 ~---------~-------~~v-~~i~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
. + ..+ ...+++++...++.+. ..+.|.-.|+++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 011 2345566555555422 134577788889988877764222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEECCCcEEEEEcCCCch
Q 001159 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGVR 666 (1135)
Q Consensus 632 ~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~ 666 (1135)
. ....-+.+.. +|+ .++.++.+|.+.++|.++++.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0 0111122333 553 788999999999999999943
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.14 E-value=0.2 Score=51.24 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=126.4
Q ss_pred CCceEEEEeecCCCEEEEEe-CC--eEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001159 841 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
......+.|..+|.++-+.+ .| .|+.+|+.+++......-.. ----.++... +++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccce
Confidence 45566788888888888777 44 69999999999876654332 2234455553 4566666678999999999999
Q ss_pred eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 917 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 917 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
.+.++.- .+.=++|+ .|++.|+.......+.++|.++.+....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~---------------------------------- 164 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT---------------------------------- 164 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE----------------------------------
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE----------------------------------
Confidence 9988864 45668888 4677777776677799999887553221
Q ss_pred eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccC-----CCC
Q 001159 997 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS-----NTA 1071 (1135)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~ 1071 (1135)
|.|.+ .+.. -..+.-+-+- +|...|=.-....|..-|..+|+....+..+...+..... ...
T Consensus 165 -i~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~d 231 (264)
T PF05096_consen 165 -IQVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDD 231 (264)
T ss_dssp -EE-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS
T ss_pred -EEEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCC
Confidence 11111 1111 1123445553 6776776666778899999999999888766554432111 112
Q ss_pred ccEEEEecCCCCCEEEEEecCCcEE
Q 001159 1072 HPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1072 ~~~~~~~~~~~~~~l~sg~~dg~v~ 1096 (1135)
-.=.++|.|..+++++||-.=-.++
T Consensus 232 VLNGIAyd~~~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 232 VLNGIAYDPETDRLFVTGKLWPKLY 256 (264)
T ss_dssp -EEEEEEETTTTEEEEEETT-SEEE
T ss_pred eeEeEeEeCCCCEEEEEeCCCCceE
Confidence 2338999998888888886544443
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.31 Score=55.28 Aligned_cols=176 Identities=13% Similarity=-0.031 Sum_probs=89.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCcee---eeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR---QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+.|.++.|+.+.+ |++...||.+++||+....... ......-....+.+..+..+|- .++++ ++.+.+-.-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7899999998654 5566799999999987433000 0000111112232333433442 33333 3434433211
Q ss_pred CCe-eeeee---cC-----CCC-CeeE-EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 486 AGR-KQYTF---EG-----HEA-PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~-~~~~~---~~-----h~~-~v~~-i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
... ..+.+ .+ |.. .... ..+. .+....+....++.+.+.+-..... ....+++..+++||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~--~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS--SDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEee--cCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 111 11111 11 000 0111 1122 2224455555556666443222111 11245899999999999
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
+++.... +|.+.+.+..-.+....+..........+.|..+
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 9988763 6788888876666666666553334556666644
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.11 Score=55.55 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=133.4
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
+..|.|++..++.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEc-cc
Confidence 345778887777777778899999988765331 1 1233345555444444555442 22
Q ss_pred eEEEEEeCCCCceeeeeEee-cc-cCCEEEEEEecCCCeEEEEEEcCC----------CcEEEEEcC-CCeeeeeecCCC
Q 001159 431 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD----------KMIKVWDVV-AGRKQYTFEGHE 497 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~-~h-~~~v~~v~~s~d~~~~~l~s~~~d----------~~i~iwd~~-~~~~~~~~~~h~ 497 (1135)
+.+++.+++.......... +. ...-+.+...|+|. +.+ +... ..-.+|-+. .+..++.+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 6677776554422221111 11 13456788889987 333 3222 111345444 566666666666
Q ss_pred CCeeEEEeeccCCccEEEEE-EcCCeEEEEeCcCC-----Cc--eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 498 APVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYL-----GS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~-s~dg~i~iwd~~~~-----~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
..-+.++|+|++ +.++.+ +..+.|.-|++... .. ...+....+..-.++...+|.+-+++.. +.+.|
T Consensus 163 ~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v 237 (307)
T COG3386 163 TIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRV 237 (307)
T ss_pred EecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceE
Confidence 677899999976 455554 45588888877631 11 1222333455566778888887754432 12479
Q ss_pred EEEECCCCeEEEEeecccCCceeEEEec-CCCCEEEEEe
Q 001159 570 VEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1135)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~ 607 (1135)
..|+.. |+++..+..... .+++++|- ++.+.|+..+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 999988 999999888754 67777775 3445555443
No 381
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=97.09 E-value=0.0013 Score=60.81 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+++.+.|||++..|...+|..|+++.-..+...+.+++++|+.+....++.+++....+++ .+.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 4544 9999999999999999999999999998877776678899999999999998888887766654 3444
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 4666666665
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0024 Score=70.89 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=77.9
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeE-EEEEcCCCCeEEEEcCCCcEEEEeCCCCceec
Q 001159 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
..|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4578899999 88899999999999999988 778889987888787 99999999999999999999999999988655
Q ss_pred eeeeecCCCCCCCCCCceEEEEC
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
..... ....|..+.|+
T Consensus 99 ~~~~s-------~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFS-------VETDISKGIWD 114 (665)
T ss_pred ccccc-------cccchheeecc
Confidence 43111 11567777777
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.05 E-value=0.19 Score=53.51 Aligned_cols=160 Identities=11% Similarity=0.094 Sum_probs=83.6
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe-CCCC
Q 001159 879 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKW 957 (1135)
Q Consensus 879 ~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd-~~~~ 957 (1135)
....+.+..+..++ ||++++++..-....-||--...-...-+.-..+|.+|.|+||+.+.+.+ ..|.|++=+ ....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899998 89999877655555567643221111222346789999999998876655 788888776 2222
Q ss_pred ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 958 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
+.-. ............+..++|.+++...+++..+.+.+=.=.++.-........-......+.|..+.+-++.|
T Consensus 219 ~~w~----~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 219 ETWS----EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEE-------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred cccc----cccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 2111 10011111114578999999999999988886654322444333332222225678899998877766765
Q ss_pred CCCeEEEE
Q 001159 1038 CDGAIGVF 1045 (1135)
Q Consensus 1038 ~dg~I~vw 1045 (1135)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78887655
No 384
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.00 E-value=0.24 Score=55.10 Aligned_cols=84 Identities=12% Similarity=0.202 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC-----------------CEE-
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF- 603 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~-----------------~~l- 603 (1135)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 357889999998877764 4589999999999999999999877444333322221 122
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 604 LAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+-+-.-|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 23667899999999999888777643
No 385
>PRK10115 protease 2; Provisional
Probab=96.98 E-value=1.2 Score=54.35 Aligned_cols=244 Identities=9% Similarity=0.029 Sum_probs=122.7
Q ss_pred cceEEEEEcCCCCeEEEEeC-----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC-----CCc
Q 001159 409 ISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKM 478 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~-----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d~~ 478 (1135)
-.+..+.|||||++||.+.. ...|++.|+.++..+.. .+.+ . -..++|++|++. ++++... ...
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 45778899999999988743 23588999988753321 1211 1 146999999986 3333322 247
Q ss_pred EEEEEcCCC--eeeeeecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcC--CCceeEecCCCCcEEEEEEcC
Q 001159 479 IKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 479 i~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 551 (1135)
|+.+++.++ +....+........-..+. ..++.+++..+. ++.+.+|+... ......+.........+. ..
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 888888887 3333444333333322222 324455544433 35688888533 222222322223223322 22
Q ss_pred CCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeC
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDA 628 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 628 (1135)
+..++..+..+.....|...++. .++. ..+-.+ .+..+..+.+.. +..+++...+|.-+++-+.. +..+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 34444333222234455555655 2322 233333 333677777773 34455555677655554432 233444432
Q ss_pred CCCCCCcceEEEc--CCCC-EEEEEEC---CCcEEEEEcCCC
Q 001159 629 DGGLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1135)
Q Consensus 629 ~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~ 664 (1135)
... ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 112223344 3333 4443333 467778887665
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.88 E-value=0.0027 Score=43.63 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd 953 (1135)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455677788999999999999999999999999999996
No 387
>PRK10115 protease 2; Provisional
Probab=96.85 E-value=2 Score=52.55 Aligned_cols=243 Identities=10% Similarity=0.045 Sum_probs=122.7
Q ss_pred CeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.+..+.+||||++++.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999996555544444 688899988764321 0111 11469999999987
Q ss_pred EEEeCC------CeEEEEEeCCCCc-eeeeeEeecccCCEE-EEEEecCCCeEEEEEEc-CCCcEEEEEcC--CCeeeee
Q 001159 424 GVAFSK------HIVHLYTYNPTGE-LRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCG-DDKMIKVWDVV--AGRKQYT 492 (1135)
Q Consensus 424 as~~~d------g~i~iwd~~~~~~-~~~~~~l~~h~~~v~-~v~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~ 492 (1135)
+....+ ..|+.+++.++.. -.. .+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 776542 3678888887721 111 2332223333 33334478753332222 34678888843 3432222
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
+..-.+....+. +.. + .+.+.... ...|...++........+..+ ...+..+.++ ++.|+.... .++..
T Consensus 265 ~~~~~~~~~~~~-~~~-~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~ 338 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQ-H-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLT 338 (686)
T ss_pred EECCCCCEEEEE-eCC-C-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEE
Confidence 221122222222 222 2 23332222 223444455422222233333 3367777776 445554432 23455
Q ss_pred eEEEEECCCCeEEEEee-cccCCceeEEEec--CCCC-EEEEEe---CCCeEEEEECCCCc
Q 001159 568 HLVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~-~~~~~~v~~i~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1135)
.+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 339 ~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 339 SLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 67777765443 33333 2111 23333344 3444 343332 45788889988764
No 388
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0058 Score=67.92 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=78.4
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
...+.-+.|+|.-.++|++. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|++++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 56788899999999999998 8999999988 888888887888887 999999 8999999999999999999998876
Q ss_pred EEe-cCcCCCeEEEEEc
Q 001159 919 TKL-KGHQNRITGLAFS 934 (1135)
Q Consensus 919 ~~l-~~h~~~i~~l~~s 934 (1135)
..+ ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 652 2244567777775
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.70 E-value=0.26 Score=51.72 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=94.2
Q ss_pred CceEEEEeecCCCEEEEEe--CC--eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-cccce
Q 001159 842 ESAACIALSKNDSYVMSAS--GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 916 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg--~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~ 916 (1135)
..+.+.++|+|++.+|... ++ .+.++... .....+. ....++.-.|++ ++...+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 4788999999999887765 44 45555543 3333322 233788889999 677666666666667763 33333
Q ss_pred ee-EEec--CcCCCeEEEEEcCCCCeEEEEc---CCCcEEEEeCCCCcee----ceeeeecCCCCCCCCCCceEEEECCC
Q 001159 917 VK-TKLK--GHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKL----KSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 917 ~~-~~l~--~h~~~i~~l~~s~d~~~l~s~~---~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
.. ..+. .-.+.|+++.+||||.++|... .++.|.+=-+.....- ....+...... ...+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCC
Confidence 22 1122 1122899999999999888765 3466766655422211 01111111111 157889999999
Q ss_pred CcEEEEE--ecCeEEE-EecCCce
Q 001159 987 QTHLLVV--HESQISV-YDSKLEC 1007 (1135)
Q Consensus 987 g~~l~~~--~d~~v~v-wd~~~~~ 1007 (1135)
+.+++.+ .+..+.. ....+..
T Consensus 177 ~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 177 STLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred CEEEEEeCCCCCceeEEEEccCCc
Confidence 9988884 3443433 3334433
No 390
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=96.69 E-value=0.0025 Score=59.64 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=60.0
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|.||+|+..|+..+|..|+++....+...+.+++++|..+....++.+++....++. .+.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4454 9999999999999999999999999999888887777888999988877777766665555543 2444
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4555555544
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.68 E-value=0.46 Score=51.94 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=74.6
Q ss_pred ccEEEEEE-cCCeEEEEeCcCCC-c---eeEecC---CC----CcEEEEEEcCCCCEEEEEecC--CCCCCeEEEEECCC
Q 001159 511 IQFIFSTA-IDGKIKAWLYDYLG-S---RVDYDA---PG----NWCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESE 576 (1135)
Q Consensus 511 ~~~l~s~s-~dg~i~iwd~~~~~-~---~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~ 576 (1135)
.++|+..+ ..+.|.+.|+.+.- . ...+.. .. .....+..-|+|+.++++-.+ +++.+-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 36676666 67889999987432 1 122221 10 123344455899998876543 34556799999998
Q ss_pred CeEEEEeecccC--CceeEEEecCCCCEEEEEeC--------------------CCeEEEEECCCCceEEEEeCCCCCCC
Q 001159 577 GAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGD--------------------EFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 577 ~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+.......... ..-..+.+.|..+.+++... ..++.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765433 12345778888888888642 35799999999999999987643223
Q ss_pred cceEEEcC--CCCEEEEEEC-CCcEEEE
Q 001159 635 SPRLRFNK--EGSLLAVTTS-DNGIKIL 659 (1135)
Q Consensus 635 v~~~~~~~--~~~~l~~~~~-dg~i~iw 659 (1135)
...+.|.. +..+-++++. ..+|..|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEE
Confidence 45666654 3444333332 3344444
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.68 E-value=0.16 Score=60.21 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=114.3
Q ss_pred eEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCC------CcEEEEEccccee--eEEecCcCCCeEEEEE
Q 001159 863 KVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEV--KTKLKGHQNRITGLAF 933 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~i~~l~~ 933 (1135)
.+..||..+.+-...-.-..... .+++.. ++.+.+.|+.+ ..+..||..+++- +..+....... + +.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~-~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-S-LA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-e-EE
Confidence 46778877654221111111111 223333 56788888854 3477888776642 22222111111 1 22
Q ss_pred cCCCCeEEEEcCCC-----cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe-c------------
Q 001159 934 SPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E------------ 995 (1135)
Q Consensus 934 s~d~~~l~s~~~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d------------ 995 (1135)
.-+|+..+.||.++ ++..||..+.+-. .+....... .....+ .-+|+..++|+ +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~---~~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK---MLPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEE---ECCCCCccc---ccccEE--EECCEEEEEeCCCcccccccccccc
Confidence 33788888888764 4788998765421 111111110 111122 23566666542 2
Q ss_pred -----------CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC------CeEEEEECCC-ceeeeeeC
Q 001159 996 -----------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFRCRIG 1057 (1135)
Q Consensus 996 -----------~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d------g~I~vwd~~~-~~~~~~~~ 1057 (1135)
..+..||.....-....+.. .......+..-+|++.+.|+.+ ..|..||.++ .+-...-.
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 24778888333322222211 1112222334567887888764 2467899887 44332111
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCC--cEEEEecCCCccccCCCCCCCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDN 1115 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~v~~W~~~~~~~~~~~~~~~~~ 1115 (1135)
++.. ....+++-. ++++.++||.|| ++-.||+.+.+ |..-.|...
T Consensus 499 ----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~ 545 (557)
T PHA02713 499 ----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHS 545 (557)
T ss_pred ----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcC
Confidence 1111 111122222 678999999999 77788887766 877666643
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.63 E-value=0.19 Score=55.78 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCC-----------------cEEEEE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN-----------------NIIAIG 901 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~-----------------~~lasg 901 (1135)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|..+. +.-+....... -+++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 66789999999999888876 399999999999999998876554 22222221011 133445
Q ss_pred eCCCcEEEEEcccceeeEEec
Q 001159 902 MEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
-.-|.|.||.+.+|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 567889999988887776654
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.59 E-value=0.0058 Score=41.87 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.1
Q ss_pred ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 872 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 872 ~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
++++..+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355677778999999999999 778999999999999996
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.55 E-value=1.9 Score=48.29 Aligned_cols=286 Identities=13% Similarity=0.161 Sum_probs=154.1
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee---c--CCCEEEEE
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS---K--NDSYVMSA 859 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s---~--dg~~la~~ 859 (1135)
...|++|+..|.++||+.......+. ..++...+ ..+|..++.- + +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 45688999999999997533222111 11111111 4455555532 2 34466666
Q ss_pred eCCeEEEEECCC--cc-------EEEEEeCCC--CCeEEEEEecCC----CcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 860 SGGKVSLFNMMT--FK-------VMTMFMSPP--PAATFLAFHPQD----NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 860 ~dg~i~vwd~~~--~~-------~~~~~~~h~--~~v~~l~~sp~~----~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
.-.++.||.+.. +. .+.....|. .....++.-|.+ ..+|.+=+.||++.+|+-+.......+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888887731 11 122222233 223334444332 36888889999999999776554444443
Q ss_pred CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCc--------------------eeceeeeecCCCCCCCCCCceEEEEC
Q 001159 925 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE--------------------KLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~--------------------~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
---...++|.+.-+.+++++.+..+.-|....-. .+.....-.. |.. ...+..+.++
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~--~l~i~v~~~~ 250 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQ--ALDIQVVRFS 250 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-Cce--eEEEEEEEcC
Confidence 2223457888888899999998888888653210 0000000000 000 0122333444
Q ss_pred CCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEee----CCC---EEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 985 NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSC----DGL---LVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 985 ~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~----d~~---~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
.....+++-+.+.+.+.+.+|....... .+ -.+.....|.. ++. .+++++.++.+.||.=.+..--+.+.
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~l~~~kr-Ld--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~ 327 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGSLRFQKR-LD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP 327 (418)
T ss_pred CCCceEEEEecceEEEEcCCCeEEEEEe-cC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC
Confidence 4555566666677777777653332222 22 11222222222 222 47888899999999866544444332
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccCCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~~ 1110 (1135)
. .++ .+.++..+.-..+|++=+++|.+.+-=+.+.-..+..+
T Consensus 328 ~----------~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p 369 (418)
T PF14727_consen 328 H----------VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVP 369 (418)
T ss_pred C----------CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCC
Confidence 1 112 22222222223589999999999998777755444433
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.054 Score=59.19 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-----EEEEcCCeEEEEeCcCCCc-eeE-ecC
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RVD-YDA 539 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~s~dg~i~iwd~~~~~~-~~~-~~~ 539 (1135)
.+++.++.....++-.|++.|+.+..+.-|.. |+-+.+.|+..+..+ +.|-.|+.|.-||.+-... ... ...
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34677888888899999999999999987776 777777777655444 4466788899999885444 111 111
Q ss_pred C----CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE-EEeecccCCceeEEEecCCCCEEEEEeCCCeEEE
Q 001159 540 P----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 540 ~----~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 614 (1135)
+ .....|.+-..+| ++++|+. +|.|++||- .+... ..+++... .|..+..+.+|++|++.+. ..+.+
T Consensus 425 kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdr-i~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlL 496 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDR-IGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLL 496 (644)
T ss_pred cccccccccceeeecCCc-eEEEeec----CCcEEeehh-hhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEE
Confidence 1 2245666666665 6666664 778999997 44443 44555555 8999999999999887764 45555
Q ss_pred EEC
Q 001159 615 WDM 617 (1135)
Q Consensus 615 wd~ 617 (1135)
.++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 554
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.49 E-value=2 Score=48.03 Aligned_cols=281 Identities=10% Similarity=0.114 Sum_probs=148.4
Q ss_pred ecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-----CCCeEEEEeCC
Q 001159 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-----DGLMLGVAFSK 429 (1135)
Q Consensus 355 sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----d~~~las~~~d 429 (1135)
+++++..+++|+..|.++||+...+.......+ +-..-..+|..++.-+ +...||+ -.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 344555788999999999999865442211000 0112345677766532 2234444 456
Q ss_pred CeEEEEEeCCC-------CceeeeeEeecccC--CEEEEEEecC----CCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 430 HIVHLYTYNPT-------GELRQHLEIDAHVG--GVNDIAFAHP----NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 430 g~i~iwd~~~~-------~~~~~~~~l~~h~~--~v~~v~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
..+.||.+... .... ...+..|.- ....++.-|- ++. +|..=+-||.+.+++-+.....+.+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 67888887322 1111 112223332 2334444332 233 788889999999999554443444433
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----------------------eeEecCCCC--cEEEEEEcC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDAPGN--WCTMMAYSA 551 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~~~~~--~i~~~~~s~ 551 (1135)
.---..+++.+.. +.+++++.+..+..|....... ...+...+. .|..+.++.
T Consensus 174 ~llPgPl~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 174 FLLPGPLCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CCCCcCeEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 2222234555555 6799999999999886532110 011111111 233344443
Q ss_pred CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC----CC---CEEEEEeCCCeEEEEECCCCceEE
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
....+++-+ ...+.+.+. +|.+....+-.-. +.....|.. ++ ..++.++.++++.||.= .+++.
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVW 322 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEE
Confidence 444444443 566777775 4655444333221 222222221 22 24788889999999853 34444
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
........-.+.-..|..-...|++-+.+|.+.+-=+-|..
T Consensus 323 sA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 323 SAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred ecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 43332211112222233334588888999999998776663
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.42 E-value=1 Score=49.55 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=118.5
Q ss_pred ceEEEEeecCCCEEEEEeCCeEEEEECCCccE---EEEEe----CCCCCeEEEEEecC---CCcEEEEEeCC--------
Q 001159 843 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMFM----SPPPAATFLAFHPQ---DNNIIAIGMED-------- 904 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~h~~~v~~l~~sp~---~~~~lasg~~d-------- 904 (1135)
..++|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988876689999999 44443 22221 12345789999982 13333333321
Q ss_pred CcEEEEEcccc-------e-eeEEecC---cCCCeEEEEEcCCCCeEEEEcCCCc-------------EEEEeCCCCcee
Q 001159 905 SSVQIYNVRVD-------E-VKTKLKG---HQNRITGLAFSPTLNALVSSGADAQ-------------LCMWSIDKWEKL 960 (1135)
Q Consensus 905 g~v~iwd~~~~-------~-~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~-------------i~iwd~~~~~~~ 960 (1135)
..|.-|.+..+ + .+..+.. .......|+|.|||.+.++.+..+. |.-.+.+. +..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444333 1 1112222 1223467999999988888875543 11111111 000
Q ss_pred ceeeeecCCCCC-----CCCCCceEEEECCC-CcEEEE--EecCeEEEEec-CCce----------------eeccCCC-
Q 001159 961 KSRFIQAPAGRQ-----SPLVGETKVQFHND-QTHLLV--VHESQISVYDS-KLEC----------------SRSWSPK- 1014 (1135)
Q Consensus 961 ~~~~~~~~~~~~-----~~~~~v~~~~~s~d-g~~l~~--~~d~~v~vwd~-~~~~----------------~~~~~~~- 1014 (1135)
.........+.. ........++|+|. |.++++ +.+..=.|.-+ .+.- .......
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 000000000000 00123467999999 777776 33332222222 1110 0000000
Q ss_pred --------CCCCCCEEEEEEee-------CCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1015 --------DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1015 --------~~h~~~i~~~~~s~-------d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
-.+...+..+.|-. +|.++++.-..+.|....++++..+.... ... .....+++.+.+.
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~----~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL----GGFGGRPRDVAQG 314 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC----TTSSS-EEEEEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc----ccCCCCceEEEEc
Confidence 01234566677753 45566666666788888877553322111 000 1122357788888
Q ss_pred CCCCCEEEEEecCCcEE
Q 001159 1080 PSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1080 ~~~~~~l~sg~~dg~v~ 1096 (1135)
| ||.+.++.+.+|.|+
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 8 788888888888874
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.41 E-value=0.18 Score=52.93 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=89.9
Q ss_pred CeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEe-CCCCceec
Q 001159 884 AATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWEKLK 961 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd-~~~~~~~~ 961 (1135)
.+.+.++++ +++.+|... .++.-.+|-...+.....+. -...++...|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 688999999 676666554 23333344333333333321 223788899999988887777777777774 2333211
Q ss_pred eeeeecCCCCCCCCCCceEEEECCCCcEEEEEe----cCeEEEEec--CCce-eec----cCCCCCCCCCEEEEEEeeCC
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS--KLEC-SRS----WSPKDALPAPISSAIYSCDG 1030 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~v~vwd~--~~~~-~~~----~~~~~~h~~~i~~~~~s~d~ 1030 (1135)
...+...... ..|..+.+||||..+|... ++.|.|--+ .... ... ..........++.++|.+++
T Consensus 102 ~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1112211110 1689999999999998832 677887766 1111 111 11111124688999999999
Q ss_pred CEEEEEeCCCe
Q 001159 1031 LLVYAGFCDGA 1041 (1135)
Q Consensus 1031 ~~l~~~~~dg~ 1041 (1135)
.+++.+...+.
T Consensus 178 ~L~V~~~~~~~ 188 (253)
T PF10647_consen 178 TLVVLGRSAGG 188 (253)
T ss_pred EEEEEeCCCCC
Confidence 98777655443
No 400
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.39 E-value=0.074 Score=63.54 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=98.6
Q ss_pred CCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC-eeEEEeeccC---CccEEEEEEcCCeEEEEeCcCCCceeE-ec-
Q 001159 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKE---SIQFIFSTAIDGKIKAWLYDYLGSRVD-YD- 538 (1135)
Q Consensus 465 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~- 538 (1135)
.+.++|........|+-.|++.|+.+..+..|... |..++-.... .....+.|-.++.+..||.+-.+.... -.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33434555566789999999999999999887654 6666532110 124567788889999999987653221 11
Q ss_pred ---CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 539 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 539 ---~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
......+|++-+.+| +||+|+. +|.|++||--..+....+.+... +|..++.+.||+++++.+. ..+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEE
Confidence 123467788888777 5556653 88899999433233334455444 8999999999999988765 456666
Q ss_pred EC
Q 001159 616 DM 617 (1135)
Q Consensus 616 d~ 617 (1135)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.76 Score=47.16 Aligned_cols=178 Identities=11% Similarity=0.123 Sum_probs=111.6
Q ss_pred EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec--CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 878 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 878 ~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
+.+-...+.++.|+| +.+.|++......-.+|=-.+|+.+.++. +-. ..-++.+.-++++.++--.++.+.++.++
T Consensus 81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 344555699999999 66777767666666666666788887754 422 34578888899999888889999999887
Q ss_pred CCceeceeee-ecCCCCCCC-CCCceEEEECCCCcEEEEEe-cCeEEEEecCCce-eeccCCCCCC-------CCCEEEE
Q 001159 956 KWEKLKSRFI-QAPAGRQSP-LVGETKVQFHNDQTHLLVVH-ESQISVYDSKLEC-SRSWSPKDAL-------PAPISSA 1024 (1135)
Q Consensus 956 ~~~~~~~~~~-~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~-d~~v~vwd~~~~~-~~~~~~~~~h-------~~~i~~~ 1024 (1135)
.......... +..-+.... ..+--.++|+|....|.+.. .+-+.||.+++.. .........+ -..|+++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 6632211111 111111110 14556899999998888864 4556776662111 1111111111 2346777
Q ss_pred EEee-CCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 1025 IYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1025 ~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.|.+ .+.+|+.+.+++.+...|.. |+.+..+..
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL 272 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSL 272 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecC-CCeeeeEEe
Confidence 7875 56678888888888888887 454555543
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.075 Score=58.15 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred EEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCC--eE-----EEEcCCCcEEEEeCCCCceeceeeeecCC
Q 001159 897 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN--AL-----VSSGADAQLCMWSIDKWEKLKSRFIQAPA 969 (1135)
Q Consensus 897 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~--~l-----~s~~~D~~i~iwd~~~~~~~~~~~~~~~~ 969 (1135)
+|.++..-..++-.|++.|+.+.++.-|.+ |+-+.+.|+.+ .| +.|-.|..|.-||..-...- .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 444555567788999999999999987776 88888888753 22 23445777889998743321 111122
Q ss_pred CCCCC-CCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 970 GRQSP-LVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 970 ~~~~~-~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|.-. ...-.|.+-..+|..++.+.+|.|++||-.+....+..+. ...+|..+..+.||++|++. .+..+.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg--LG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPG--LGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccc--cCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 22111 1233455555666555557899999999955555554443 38899999999999998854 56777776654
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.33 E-value=0.065 Score=59.72 Aligned_cols=157 Identities=13% Similarity=0.178 Sum_probs=91.7
Q ss_pred CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC----CCeEEEEcCCCcEEEEeCC
Q 001159 882 PPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT----LNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d----~~~l~s~~~D~~i~iwd~~ 955 (1135)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|.|- -..|...-..+.|.+|.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35788999984 444444432 344443322 2233444 34899999985 3356667778889999886
Q ss_pred CCceeceeee--ecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCC
Q 001159 956 KWEKLKSRFI--QAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDG 1030 (1135)
Q Consensus 956 ~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~ 1030 (1135)
.......+.+ +.-.-......-...+.|+|....|++ +....=.++++ +...++.-... .+-|.|.+|..||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcC
Confidence 3221111111 111100111123367899999999998 44443345666 33333322222 6789999999999
Q ss_pred CEEEEEe-CCCeEEEEECCC
Q 001159 1031 LLVYAGF-CDGAIGVFDAET 1049 (1135)
Q Consensus 1031 ~~l~~~~-~dg~I~vwd~~~ 1049 (1135)
++|+++- ..=.-+|||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 9877663 334578898664
No 404
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.32 E-value=0.22 Score=43.17 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=56.2
Q ss_pred EEEEEEec---CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC
Q 001159 456 VNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1135)
Q Consensus 456 v~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 532 (1135)
|+++++.. ||.. -|+.|+.|..|++|+ ....+..+. ....|.+++-... ..++.+..+|+|-+|+-. .
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeCc--c
Confidence 55666554 5555 799999999999998 346677776 4556777775443 579999999999999642 3
Q ss_pred ceeEecCCCCcEEEEEE
Q 001159 533 SRVDYDAPGNWCTMMAY 549 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~ 549 (1135)
.....+.... +.++++
T Consensus 73 RlWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 73 RLWRIKSKNQ-VTSMAF 88 (111)
T ss_pred eeeeeccCCC-eEEEEE
Confidence 3333343333 444443
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.31 E-value=2.3 Score=46.78 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=59.3
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----CCeE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLML 423 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~l 423 (1135)
..++|+|.|||+ ++++ ...|.|.+++ ..+.... .+ -+ ...+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~--------~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--AD--------LPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--cc--------cccccccccCCcccceeccccCCCCEEE
Confidence 578999999997 6654 5699999999 3343210 00 00 01224455677899999994 4433
Q ss_pred EEEeCC--------CeEEEEEeCCC-Ccee---ee-eEeec---ccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 424 GVAFSK--------HIVHLYTYNPT-GELR---QH-LEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 424 as~~~d--------g~i~iwd~~~~-~~~~---~~-~~l~~---h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
++.+.. ..|.-|....+ ..+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 333321 24555655544 1111 11 11122 223456799999995 455554443
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.29 E-value=0.58 Score=45.94 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=43.0
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 001159 846 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg 901 (1135)
.+++..+|++.++.- .++|.-.|..+|+.+.+++-+...|+|++|--.+-.++.+.
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 355566888766665 78999999999999999999999999999964222344433
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.25 E-value=0.38 Score=56.98 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=123.5
Q ss_pred cCCCCeEEEEeCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC------CcEEEEEc
Q 001159 417 GPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDV 484 (1135)
Q Consensus 417 spd~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d------~~i~iwd~ 484 (1135)
+..+.++++|+.+ ..+..||..++... ....+. +...-.+++... +. +.++||.| .++..||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecC
Confidence 3345666777766 35888888876322 222222 222344455543 44 78888888 36778887
Q ss_pred CCCeeee--eecC--CCCCeeEEEeeccCCccEEEEEEcCCe-----EEEEeCcCCCceeEecCCCCcEEEEEEcCCCCE
Q 001159 485 VAGRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 485 ~~~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 555 (1135)
.+.+-.. .+.. +...+..+ +|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|..
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred CCCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 7766332 1211 12222222 4478888888865 777877765543332222211111222335666
Q ss_pred EEEEecCCCCC--CeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeC
Q 001159 556 LFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 556 l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~ 628 (1135)
.++||.+...+ ..+..||..+++-...-.-.....-..++. -++..++.||.|+ +|..||..+.+....-..
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 66776544332 678899998876543322222111112222 2456667777665 377788887665444222
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCC
Q 001159 629 DGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 664 (1135)
......+..+. -++...++|+.|| +|..||..++
T Consensus 510 ~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 510 TSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 11111111222 2466777887765 4556665544
No 408
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.20 E-value=0.15 Score=44.29 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=65.3
Q ss_pred eeEEEEe---cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 349 VMSMDFH---PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 349 V~~v~~s---p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
|+++++. -||+.-|++|+.|..|+||+-+. .+.+ -...+.|.++.-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555554 46666788899999999999542 2211 124556888877766 66999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec---CCCeEEEEEEcCCCcEE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~d~~i~ 480 (1135)
+..+|+|-+|+-.. +..+ .+ .+..+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iK-SK~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IK-SKNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ec-cCCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999998643 2222 22 222366665543 3433 578887777663
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.02 E-value=2 Score=44.20 Aligned_cols=196 Identities=10% Similarity=0.068 Sum_probs=117.2
Q ss_pred EEEEEecCCcceeEecccc--eeeeEEeccccCCCCCcccccccCeeecCCCCccee-ccCCCCCCCCCceEEEEeecCC
Q 001159 777 VRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIALSKND 853 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~i~~l~~s~dg 853 (1135)
..+.|..+|..+-+.+.-| .++.+ ++.+|+... ..+.. ...-..++...|.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~----------------------d~~tg~~~~~~~l~~----~~FgEGit~~~d~ 101 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKV----------------------DLETGKVLQSVPLPP----RYFGEGITILGDK 101 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEE----------------------ETTTSSEEEEEE-TT----T--EEEEEEETTE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEE----------------------ECCCCcEEEEEECCc----cccceeEEEECCE
Confidence 7888888888777776654 44444 555555432 22322 3444556665544
Q ss_pred CEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CCe
Q 001159 854 SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NRI 928 (1135)
Q Consensus 854 ~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~i 928 (1135)
-+..+--++...+||..+.+.+.++.- .+.=..++. +++.|+.......++++|..+-+....+.-.. ..+
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence 444444489999999999999998863 345566663 55667666667789999988777666554322 246
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC-------CCCCCCCCceEEEECCCCcEEEEEecCeEEEE
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1001 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vw 1001 (1135)
+.|.|- +|...|=.=....|...|..+|+.....-+..+. .......-.+.+|+.|.+..+.+++..-=++|
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ly 256 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLY 256 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceE
Confidence 667775 7888887777778888999998866544322211 11111244689999998887777655444444
Q ss_pred ec
Q 001159 1002 DS 1003 (1135)
Q Consensus 1002 d~ 1003 (1135)
.+
T Consensus 257 eV 258 (264)
T PF05096_consen 257 EV 258 (264)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=1.9 Score=44.32 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=109.0
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.|-...|+++.|+|+.+.|.+..+...-.||=...|..++.. .+.+. ..-..+.|..+|+ +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 345555999999999999999988887777766667766543 34442 2356788888887 7777788888988887
Q ss_pred CCCeeeee-------ec--CC-CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe---cCC-------CCcE
Q 001159 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1135)
Q Consensus 485 ~~~~~~~~-------~~--~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~-------~~~i 544 (1135)
..+..+.. +. .+ +.....++|.|.. ..|+.+-.-+-+.||.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 76532221 11 12 5567789998866 67888887777777766533211111 111 1256
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.++.|++....|++-+ ++.+.+.-.|.. |..+..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7788887666666555 346667666654 443433
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.95 E-value=0.024 Score=40.71 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=29.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccc
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~ 381 (1135)
...|.+++|+|... ++|.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8999999999999999 4443
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.85 E-value=3.8 Score=45.15 Aligned_cols=257 Identities=13% Similarity=0.117 Sum_probs=108.2
Q ss_pred eeeEEeec--C-CCCeeEEEEe-----------cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 337 ~~~~~~~~--h-~~~V~~v~~s-----------p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
++.+..+. + .++.-..-|+ .+.++|++-|-..+.|.|.|+.+.... .++.++-. +..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~----P~l~KvIe-----~~e 122 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRK----PRLHKVIE-----PEE 122 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-----EEEEEE------HHH
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCC----CceEeeeC-----HHH
Confidence 45555554 3 3455555555 245555555557889999999853221 11111100 001
Q ss_pred hcc-CCCcceEEEEEcCCCCeEEEE--eC----CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-
Q 001159 403 LLN-DAAISVNRCVWGPDGLMLGVA--FS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1135)
Q Consensus 403 ~~~-~h~~~V~~v~~spd~~~las~--~~----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~- 474 (1135)
+.. ..-..-..+---|+|+.++++ .. .|-+.+.|-++.+.......-.+....-..+.|.|.-+ .++|..
T Consensus 123 v~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 123 VFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp HHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred HHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 111 011112223334688888885 22 34577777776443332111111122346677777666 666654
Q ss_pred -------------------CCCcEEEEEcCCCeeeeeecCCC--CCeeEEEeeccCCccE-EEEEEcCCeEEEEeC-cCC
Q 001159 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DYL 531 (1135)
Q Consensus 475 -------------------~d~~i~iwd~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~-l~s~s~dg~i~iwd~-~~~ 531 (1135)
...++.+||+.+.+.++++.--. .....+.|..+++..+ ++.+....+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 34689999999999999886433 2355666665544333 333344555555533 222
Q ss_pred C----ceeEecCC-----------------CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC---eEEEEee-cc
Q 001159 532 G----SRVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG---AIKRTYS-GF 586 (1135)
Q Consensus 532 ~----~~~~~~~~-----------------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~-~~ 586 (1135)
+ .+..+... ..-|+.+..|.|.++|+.... ..|.|+.||+... +++.+.. +.
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1 11111111 234789999999999998765 5888999999753 2332221 11
Q ss_pred c--------------CCceeEEEecCCCCEEEEEe
Q 001159 587 R--------------KRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 587 ~--------------~~~v~~i~~s~~~~~l~~~~ 607 (1135)
. .+...-+..|.||++|+...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 00124467777887777654
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.025 Score=55.20 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=72.0
Q ss_pred CCEEEEEe-CCeEEEEECCCcc-EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-CCeE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 929 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i~ 929 (1135)
+.-+++|. +|.|.+|+..-.. ....+..-...|.++.-.-+++.+..++..||.||.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34556665 9999999876211 1111111223344444333356688999999999999999999888887887 6667
Q ss_pred EEEEcCCCCeEEEE--cCCCcEEEEeCCCC
Q 001159 930 GLAFSPTLNALVSS--GADAQLCMWSIDKW 957 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~--~~D~~i~iwd~~~~ 957 (1135)
.+..+..++.++++ |.|..++.|++..-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 77777777777777 78888888887753
No 414
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.26 Score=58.95 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=70.8
Q ss_pred EEEEEeccceEEEEEcCCccc-cccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
.+|.|+..|.|...|+.+.-. ... -..-.++|++++|+.||+.++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~-------------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQ-------------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhc-------------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 577888888998888775321 111 123567899999999999999999999999999999
Q ss_pred CCceeeeeEeecccCCE---EEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 440 TGELRQHLEIDAHVGGV---NDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v---~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
++.++ .+..|..++ ..+.+..++. .++++...|. +|.+
T Consensus 162 ~k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred Cccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 88776 344444444 4444555555 6888887775 6654
No 415
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.76 E-value=2.9 Score=43.46 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=118.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcc------cc-eeeEEecC-----cCCCeEEEEEcCCCC------------eE
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVR------VD-EVKTKLKG-----HQNRITGLAFSPTLN------------AL 940 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~------~~-~~~~~l~~-----h~~~i~~l~~s~d~~------------~l 940 (1135)
-..|+|+| .+.+-++....+...+||.. .. .++-.+.. -....+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999 77777777777899999986 11 22333332 234678888875432 35
Q ss_pred EEEcCCCcEEEEeCCCCceec-eeeeecCCCCCCCCCCceEEEEC--CCCcEEEEE--ecCeEEEEecCCceeec---cC
Q 001159 941 VSSGADAQLCMWSIDKWEKLK-SRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVV--HESQISVYDSKLECSRS---WS 1012 (1135)
Q Consensus 941 ~s~~~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~--~d~~v~vwd~~~~~~~~---~~ 1012 (1135)
+.+++||+|.-|...-..... ...+....+.. ..--..+++- ..+.+|..+ ..++|.|||.+...+.. +.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~--gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ--GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC--cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 778899999999864433210 00111111111 0222345554 335666664 68999999985554321 10
Q ss_pred ----CCCCCCCCEEE------EEE---eeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1013 ----PKDALPAPISS------AIY---SCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1013 ----~~~~h~~~i~~------~~~---s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
+...-...|.. +.| .+++..=+.|-.-|.|-+||.. |++++++.....+ ..+-.++.-
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~L--------NaPWG~a~A 252 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRL--------NAPWGLAIA 252 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcc--------cCCceeeeC
Confidence 00000111111 111 2333333444556899999998 7888887644322 112223322
Q ss_pred C-----CCCCEEEEEecCCcEEEEecCCCc
Q 001159 1080 P-----SEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1080 ~-----~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
| -.+.+|+---.||+|-.+|..+++
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 2 245788888889999999998877
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.76 E-value=2.4 Score=51.78 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=97.7
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee-------------EEEeeccCCccEEEEEEc----------CCeEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY-------------SVCPHHKESIQFIFSTAI----------DGKIKA 525 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~s~----------dg~i~i 525 (1135)
.++.++.|+.+.-.|.++|+.+..+. ..+.|. .+.-.|.-.+..++.|+. +|.|+-
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 57778889999999999999887763 222221 011111111245666643 688999
Q ss_pred EeCcCCCceeEecCC---------CC--------cE-EEEEEcCCCCEEEEEec--------------CCCCCCeEEEEE
Q 001159 526 WLYDYLGSRVDYDAP---------GN--------WC-TMMAYSADGTRLFSCGT--------------SKEGESHLVEWN 573 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~---------~~--------~i-~~~~~s~~~~~l~~~~~--------------~~~~~~~i~~wd 573 (1135)
+|.++++....+... .+ .+ ..+++++....++.... ++.-.+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887765421 00 11 23455666555554321 011245688889
Q ss_pred CCCCeEEEEeec-ccCC-------ceeEEEecC-CCC---EEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 574 ESEGAIKRTYSG-FRKR-------SLGVVQFDT-TRN---RFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 574 ~~~~~~~~~~~~-~~~~-------~v~~i~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.+||+....++. |++- ...-+.+.. +|+ .++.++.+|.+++.|.++|+++....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 999999988865 3320 111122332 453 68888999999999999999887654
No 417
>PHA02713 hypothetical protein; Provisional
Probab=95.75 E-value=0.53 Score=55.96 Aligned_cols=188 Identities=10% Similarity=0.061 Sum_probs=95.4
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCccEEEEEeC-CCCC-eEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce
Q 001159 851 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPA-ATFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDE 916 (1135)
Q Consensus 851 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-h~~~-v~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~ 916 (1135)
-++...+.|+ + ..+..||..+..-. .+.. .... -.+++.. ++++.+.|+.++ ++..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3667777776 3 24778887765321 1111 1111 1123332 678888898764 48889987653
Q ss_pred --eeEEecCcCCCeEEEEEcCCCCeEEEEcCCC-----------------------cEEEEeCCCCceeceeeeecCCCC
Q 001159 917 --VKTKLKGHQNRITGLAFSPTLNALVSSGADA-----------------------QLCMWSIDKWEKLKSRFIQAPAGR 971 (1135)
Q Consensus 917 --~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~ 971 (1135)
.+..+.........++ -+|++.+.||.++ .+..||..+.+=. .+.....
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~---~v~~m~~- 452 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE---TLPNFWT- 452 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---ecCCCCc-
Confidence 2222222111122222 3788888888653 3667877765411 1111110
Q ss_pred CCCCCCceEEEECCCCcEEEEEe-c------CeEEEEecCC-ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC--e
Q 001159 972 QSPLVGETKVQFHNDQTHLLVVH-E------SQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG--A 1041 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~~l~~~~-d------~~v~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg--~ 1041 (1135)
......+..-+|+..++|+ + ..+..||... +.-.............. +..-+|++.++|+.|| .
T Consensus 453 ----~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 453 ----GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYML 526 (557)
T ss_pred ----ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce--eEEECCEEEEEeeecceee
Confidence 0011112233455555542 2 2467888843 33222222211111122 2234888999999998 7
Q ss_pred EEEEECCCceee
Q 001159 1042 IGVFDAETLRFR 1053 (1135)
Q Consensus 1042 I~vwd~~~~~~~ 1053 (1135)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 788888876544
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.12 Score=61.58 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.3
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
.+-.++.|+..|.+-..|+.+. +.+...=..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4557889999999988888764 111111112356899999999999 889999999999999999999999988888
Q ss_pred CeeEEEeec-cCCccEEEEEEcCCeEEEEeC
Q 001159 499 PVYSVCPHH-KESIQFIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 499 ~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~ 528 (1135)
+++++-++. .+++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 888776543 223346777777776 5543
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.73 E-value=1.2 Score=52.70 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=125.5
Q ss_pred ecCCCEEEEEe-C------CeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccc
Q 001159 850 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVD 915 (1135)
Q Consensus 850 s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~d------g~v~iwd~~~~ 915 (1135)
+..+.++++|+ . ..+..+|..++.-.....- ....-.++++. ++.+.++|+.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33456667776 4 3588899887633222211 22234556665 46888999998 35778887765
Q ss_pred ee--eEEecCcCCCeEEEEEcCCCCeEEEEcCCCc-----EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 916 EV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 916 ~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
+= +..+.......... .-+|.+.|.||.||. |-.||..+.+-. ....... ..-..-.-.-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~---~va~m~~-----~r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT---PVAPMLT-----RRSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCccc---ccCCCCc-----ceeeeEEEEECCE
Confidence 42 22222111111111 237889999999864 677777765411 1110100 0011222234555
Q ss_pred EEEEE-ec------CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCe-----EEEEECCCceeeeee
Q 001159 989 HLLVV-HE------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLRFRCRI 1056 (1135)
Q Consensus 989 ~l~~~-~d------~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~-----I~vwd~~~~~~~~~~ 1056 (1135)
..+++ .+ ..+..||...+.-....+.. ......-+-.-++.+++.|+.|+. |..||..+.+....-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 55553 22 45788988333332222211 111111133467888899988873 777888876655331
Q ss_pred CCceeccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCCCCC
Q 001159 1057 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGGTPS 1112 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~~~~ 1112 (1135)
... .......++-. ++.+.+.|+.|| +|-.||..+.+ |....+
T Consensus 508 ~m~---------~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 PMT---------SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cCc---------cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 110 11222222221 568889999997 57778777665 654433
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.65 E-value=0.036 Score=54.17 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=44.2
Q ss_pred EEE-EecCeEEEEecC--CceeeccCCCCCCCCCEEE-EEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCce
Q 001159 990 LLV-VHESQISVYDSK--LECSRSWSPKDALPAPISS-AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 990 l~~-~~d~~v~vwd~~--~~~~~~~~~~~~h~~~i~~-~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
+++ +.++.|.+|..+ +.....+... ...|.+ +.-..++.+..++..||.|+-|++.-++.++....|.
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSG---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcc---cccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 444 689999999883 2222222211 223332 3333466688999999999999999988887766553
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=95.46 E-value=3.1 Score=45.81 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEE-EEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCce
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQI-YNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 959 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~ 959 (1135)
...+..+.+.| ++.+++++ ..|.+.. ++ ..++.-... .+-...++++++.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688999999 77666655 4565543 22 222211122 233457899999999887665 4567665333343331
Q ss_pred eceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeC
Q 001159 960 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1038 (1135)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~ 1038 (1135)
=. .+..+... ....+..+++.+++..++++.+|.+.. .. .++.-........-......+.|..+++.+++| .
T Consensus 248 W~--~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 WS--KPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred cc--cccCCccc--cccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 11 11111000 013467889999998888888876653 33 333333322111113467888888777776654 7
Q ss_pred CCeEEEEEC
Q 001159 1039 DGAIGVFDA 1047 (1135)
Q Consensus 1039 dg~I~vwd~ 1047 (1135)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788877763
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.43 E-value=0.053 Score=39.01 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~ 438 (1135)
....|.+++|+|...+||.++.+|.|.++.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999984
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=1.7 Score=47.13 Aligned_cols=156 Identities=12% Similarity=0.190 Sum_probs=96.9
Q ss_pred hhHHHhhcccCCcceeeecCCCCCCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccc
Q 001159 303 SDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1135)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~ 382 (1135)
.+....+.+.+++..+..++-+..+.+ -......++|.++.||+|.+ ++|+--.+.+|.+++....+..
T Consensus 33 aNkqlfavrSggatgvvvkgpndDVpi----------Sfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPNDDVPI----------SFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCCCCCCc----------eeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh
Confidence 333455666666666666554422111 11112456999999999998 8999999999999998543322
Q ss_pred ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe
Q 001159 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1135)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s 462 (1135)
... ....+.....|....|+.+ .-+|..+..| +.+|.+...+ +.....+.|+..|....|+
T Consensus 102 l~~---------------~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 102 LEY---------------TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred hHH---------------HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEc
Confidence 110 0011223456899999876 6677776666 7777766542 2222455788899999999
Q ss_pred cCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 463 HPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
++..-.+|+|+-..+++.=+-++++.
T Consensus 163 ~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 163 PETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred cccceEeeeccccccccccEEEeece
Confidence 99885344444344555444444443
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.91 E-value=3.4 Score=40.83 Aligned_cols=94 Identities=11% Similarity=0.068 Sum_probs=60.9
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcC--C-----CceeEecC----CCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDY--L-----GSRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~--~-----~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
-+.++|+.+. ..+.++-+.+-+|.-||.+. + +.+..+.. .....-.++...+|++.+++-. .++
T Consensus 160 sNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGT 234 (310)
T ss_pred CccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcE
Confidence 3456776433 24556667788888888443 2 12222221 1112234555667777776653 778
Q ss_pred EEEEECCCCeEEEEeecccCCceeEEEecCC
Q 001159 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~ 599 (1135)
|...|+.+|+.+..+.-... .|++++|.-.
T Consensus 235 V~~~dp~tGK~L~eiklPt~-qitsccFgGk 264 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLPTP-QITSCCFGGK 264 (310)
T ss_pred EEEECCCCCcEEEEEEcCCC-ceEEEEecCC
Confidence 99999999999999998866 8999999743
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.82 E-value=5.9 Score=41.24 Aligned_cols=210 Identities=14% Similarity=0.129 Sum_probs=121.9
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcC------CC-eeeeeecC-----CCCCeeEEEeeccCC----------cc
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 512 (1135)
.-+.|+|+|.+. +-++...-+...+||.. .. ..+-++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 67777778899999986 12 22333331 234566777764321 13
Q ss_pred EEEEEEcCCeEEEEeCcCCCc-----eeEecCC-CC-cEEEEEEc--CCCCEEEEEecCCCCCCeEEEEECCCCeEE--E
Q 001159 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GN-WCTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIK--R 581 (1135)
Q Consensus 513 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~-~~-~i~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~ 581 (1135)
.++.+++||+|.-|...-... ...+... .. ....+++. ..+.+|+.+-. ..++|.++|-.-.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999997432222 1223221 22 33445554 34677777643 4788999985432221 0
Q ss_pred Eeeccc---CC-c--e---------eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC----
Q 001159 582 TYSGFR---KR-S--L---------GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (1135)
Q Consensus 582 ~~~~~~---~~-~--v---------~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---- 642 (1135)
.|.... +. + | +-..-.+++..=+.+..-|.|-++|+. ++.++.+........-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 111100 00 0 1 111112222222333345789999986 77888886655555667787755
Q ss_pred --CCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 643 --EGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 643 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
.+.+|+---.||+|..||..++ +.+-.+
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L 287 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQL 287 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeee
Confidence 4667776667999999999888 433333
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=1.8 Score=41.83 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=64.9
Q ss_pred CCCEEEEEe---CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCe
Q 001159 852 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 928 (1135)
Q Consensus 852 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i 928 (1135)
+|.++.+.+ ...|++||+.+++.+..-.-....+..=-...-+..+-+-.-.+|.-+.+|.++-+++..+.- .+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 556666665 357999999999887765433222211111110223444455788999999999888877763 4445
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCc
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
++++ .|++.|+.++...++++-|.++-.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 6665 466667777666777777776644
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.46 E-value=1.1 Score=52.40 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=77.1
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeC-----
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~----- 528 (1135)
...-+.-+.-++ ..+.-+....+.|||...+.....-. ...+.|..+.|...++|+.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455455 33444455689999998887554332 4578999999999999999999999999999843
Q ss_pred cCCCc----ee--EecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 529 DYLGS----RV--DYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 529 ~~~~~----~~--~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
....+ +. .+..+ .++|.+..|.++|..++.+| +.+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 22111 11 22223 36888999999998887763 46888874
No 428
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.24 E-value=18 Score=44.21 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=64.9
Q ss_pred EEeecCCCEEEEEeCCeEEEEECCCccEEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc--ccceeeEEec
Q 001159 847 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV--RVDEVKTKLK 922 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~--~~~~~~~~l~ 922 (1135)
.|+.|...++.+|-...+++||+...++++.... -...|+.+.+ .+..+++|..--.|.++.. +..+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 5667777788888889999999988777665432 3456888887 4567888876666655444 344433 332
Q ss_pred Cc--CCCeEEEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 923 GH--QNRITGLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 923 ~h--~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
.. ...|+++.+- |-..+|.+..=|.+.+-.+
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 21 2236666664 4456666665565555444
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.22 E-value=1.1 Score=52.51 Aligned_cols=125 Identities=13% Similarity=0.148 Sum_probs=76.8
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-CcCCCeEEEEEc--CCCCeEEEEcCCCcEEEEe
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFS--PTLNALVSSGADAQLCMWS 953 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~i~~l~~s--~d~~~l~s~~~D~~i~iwd 953 (1135)
++...-...+-+.-|. -++..++-+...++.|||...+.....-. ...+.|.++.|. ||++.+++.|-...|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3333334455555555 44555554455689999999887443322 457789999885 6889999999999999985
Q ss_pred CCC----CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 954 IDK----WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 954 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
-.. .+......+....-......+|.+..|.++|.++ ++.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence 421 1111111122111111122568899999999654 455678888886
No 430
>PHA03098 kelch-like protein; Provisional
Probab=94.22 E-value=2.2 Score=51.02 Aligned_cols=189 Identities=12% Similarity=-0.007 Sum_probs=90.7
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEccccee-
Q 001159 851 KNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEV- 917 (1135)
Q Consensus 851 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~~- 917 (1135)
.++..++.|+ + ..+..||..+.+-...-.-+.....+-+..- ++++.+.|+.+ ..+..||..+++-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 4666666665 2 2477888877554221111111111111222 67788888865 3577788776542
Q ss_pred -eEEecCcCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEE
Q 001159 918 -KTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 990 (1135)
Q Consensus 918 -~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 990 (1135)
...+....... ++ ..-++++++.||.+ ..+..||..+.+-.. +...... .. ...+...+++..
T Consensus 372 ~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~----r~-~~~~~~~~~~iy 441 (534)
T PHA03098 372 EEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPIS----HY-GGCAIYHDGKIY 441 (534)
T ss_pred eCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCcc----cc-CceEEEECCEEE
Confidence 11222111111 11 22367777777732 357888887654211 1111100 01 112223355555
Q ss_pred EEEe-c--------CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCcee
Q 001159 991 LVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRF 1052 (1135)
Q Consensus 991 ~~~~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~ 1052 (1135)
+.|+ + ..+.+||.....-............... ..-++++++.|+.+ ..|.+||..+.+-
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL--CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE--EEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 5542 1 2378888833332222211100111112 22377888888765 4688888887654
No 431
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=3.2 Score=48.28 Aligned_cols=182 Identities=10% Similarity=0.080 Sum_probs=97.9
Q ss_pred eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe----cCcCCCeEEEEEcCCCC
Q 001159 863 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL----KGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l----~~h~~~i~~l~~s~d~~ 938 (1135)
.|+|+++. |.++..+.-..+++-.+.|+. + .-|+....||++++|++. |+.+... ......|....|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 48889875 555555443344888999996 4 566678899999999986 3333321 22333466666666664
Q ss_pred eEEEEcCCCcEE-EEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE--EecCeE--EEEecCC--ceeecc
Q 001159 939 ALVSSGADAQLC-MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQI--SVYDSKL--ECSRSW 1011 (1135)
Q Consensus 939 ~l~s~~~D~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~v--~vwd~~~--~~~~~~ 1011 (1135)
.+.+. +|.+. +-+.+.... .......+.. .+..+...-+++..... .-+..| .++..+. .....+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 34333 333333111 1111111111 11122222222221111 111111 1111111 111111
Q ss_pred CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 1012 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1012 ~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
... ...+..+..||+.++|+.=..+|.|.+-.++..+.+|++...
T Consensus 213 ~~~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 213 SWP---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred CCC---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 111 356788999999999999999999999999999988888743
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.00 E-value=13 Score=45.31 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----------cee--eE-Ee--------cCcCCCeEEEEEcCC---CC
Q 001159 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------DEV--KT-KL--------KGHQNRITGLAFSPT---LN 938 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----------~~~--~~-~l--------~~h~~~i~~l~~s~d---~~ 938 (1135)
-.|..+.++| +|++||..|..| |.|-.+.. |+. .. .+ ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999 899999888766 44444431 111 11 11 134457899999987 47
Q ss_pred eEEEEcCCCcEEEEeCCCCc
Q 001159 939 ALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 939 ~l~s~~~D~~i~iwd~~~~~ 958 (1135)
.|+.-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888899999999997544
No 433
>PHA03098 kelch-like protein; Provisional
Probab=93.83 E-value=2.7 Score=50.20 Aligned_cols=150 Identities=7% Similarity=-0.037 Sum_probs=70.9
Q ss_pred cEEEEEEcC-----CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC--CCeEEEEECCCCeEEEEee
Q 001159 512 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 512 ~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~ 584 (1135)
...+.|+.+ ..+..||..+.+-...-..........+..-+++..+.||....+ -..+..||+.+.+-...-.
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 666777765 346778776554322111111111111122345556666532211 2568899988765433211
Q ss_pred cccCCceeEEEecCCCCEEEEEeCC--------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC---
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD--- 653 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 653 (1135)
......-.+++ ..++..++.||.+ ..+.+||..+.+....-...........+. -++++++.|+.+
T Consensus 424 ~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 424 LPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEY 500 (534)
T ss_pred CCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCc
Confidence 11110111222 2245555666532 238888988765433221111111112222 267777777654
Q ss_pred --CcEEEEEcCCC
Q 001159 654 --NGIKILANSDG 664 (1135)
Q Consensus 654 --g~i~iwd~~~~ 664 (1135)
+.+.+||..+.
T Consensus 501 ~~~~v~~yd~~~~ 513 (534)
T PHA03098 501 YINEIEVYDDKTN 513 (534)
T ss_pred ccceeEEEeCCCC
Confidence 46778887665
No 434
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.82 E-value=8.2 Score=39.36 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=124.4
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceecee
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 963 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~ 963 (1135)
.-..++-+| ||..-+++...+.|--.|-.+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt--- 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT--- 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence 345677788 78888888888888888988998766555566667788899999888775544 4555666655422
Q ss_pred eeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q 001159 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1043 (1135)
Q Consensus 964 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~ 1043 (1135)
....+..+. ........|.++|.+.+++..|----.|.....+..+.... ...-..|+..|||..-++.-.+..|.
T Consensus 138 ~f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 138 RFPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred EeecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence 122222221 25677889999999999864322111222233333333332 33456788899999888777777787
Q ss_pred EEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1044 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1044 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
..|-.++... .+...... +.. .+ .+--+| -|..-+|....+.++.+|.+...
T Consensus 214 ridp~~~~ae-v~p~P~~~----~~g-sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 214 RIDPFAGHAE-VVPQPNAL----KAG-SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EcccccCCcc-eecCCCcc----ccc-cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 7777766222 22211110 111 11 122233 45677777777788888876654
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.68 E-value=15 Score=41.34 Aligned_cols=154 Identities=10% Similarity=0.036 Sum_probs=87.2
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceee--EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceece
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~ 962 (1135)
...+..++ ++.+++.+..-..++-||- |+.. ..-......++++.|.+++.+++++ .+|. .+|..+.++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCcccc
Confidence 34456667 6777776654433333442 2211 1112234568999999998877655 5564 4444444431100
Q ss_pred eeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeE
Q 001159 963 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I 1042 (1135)
..+...... .....+..+.|.+++..++++.+|.+....-.++.-........-......+.|.++++.+++| .+|.|
T Consensus 316 ~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 316 FDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 001111000 0013478899999999999998888777655444433322122225678899998888867765 78887
Q ss_pred EEE
Q 001159 1043 GVF 1045 (1135)
Q Consensus 1043 ~vw 1045 (1135)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=93.49 E-value=4.2 Score=47.50 Aligned_cols=185 Identities=11% Similarity=-0.009 Sum_probs=89.7
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCC--CcEEEEEcccce--eeE
Q 001159 851 KNDSYVMSAS-G-----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VKT 919 (1135)
Q Consensus 851 ~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~d--g~v~iwd~~~~~--~~~ 919 (1135)
.++..+++|+ + .++..||..+.+-...-.-+.... .+++ .- ++.+.+.|+.+ ..+..||..+++ .+.
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 3556666665 3 247778877654322111111111 1222 23 67888888864 357888876543 222
Q ss_pred EecCcCCCeEEEEEcCCCCeEEEEcCCC---cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 920 KLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
.+......... ..-+|+..+.||.++ .+..||..+.+=. ...... .. .. ...+..-+|+..+.| |
T Consensus 348 ~l~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~---~~~~m~-~~---r~-~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQ---FGPSTY-YP---HY-KSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEE---eCCCCC-Cc---cc-cceEEEECCEEEEEC--C
Confidence 23211111112 233788888888654 4677887765421 111111 00 00 112223455555555 3
Q ss_pred eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCce
Q 001159 997 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLR 1051 (1135)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~ 1051 (1135)
.+.+||.....-........ . ....-+..-+|++.++|+.+ ..|.+||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~-~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIY-P-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCCCC-C-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57788884333322222111 1 11112223578888888765 346667766543
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=0.67 Score=55.92 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCceEEEEeecCCCEEEEEe--C-CeEEEEECCCccEEE-----EEeCC------CCCeEEEEEecCCCcEEEEEeCCCc
Q 001159 841 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVMT-----MFMSP------PPAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--d-g~i~vwd~~~~~~~~-----~~~~h------~~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
.-.+..++..+|++..++.. + -.|.+||+.+...-. -+..| ..-..++.|.|.-....|....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 55667777888888766654 3 369999997643221 12211 2345678888744456677888999
Q ss_pred EEEEEcccce-eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 907 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 907 v~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
|++..+.... ....+. -....++++|+|.|+.++.+-..|++.-|...-..... +..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCC--CcceeEEEEec
Confidence 9998765332 222232 45678999999999999999999999998766543221 11111111 26789999998
Q ss_pred CCcEEEE
Q 001159 986 DQTHLLV 992 (1135)
Q Consensus 986 dg~~l~~ 992 (1135)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 438
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.41 E-value=10 Score=38.69 Aligned_cols=232 Identities=13% Similarity=0.105 Sum_probs=141.5
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
......++-+|||..-.++. .+.|--.|..+|+....-.+....-..+...|+++.++. -+.. -|.-.|-++.+. .
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cCcc-eeEEecCcccce-E
Confidence 45567889999999888887 688888899999887777666777788888995444543 2221 354455544442 2
Q ss_pred Ee----cCcCCCeEEEEEcCCCCeEEEEcCC---------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 920 KL----KGHQNRITGLAFSPTLNALVSSGAD---------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 920 ~l----~~h~~~i~~l~~s~d~~~l~s~~~D---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+| +.-.+......|.++|.+.+++... +.|++|+...+ .....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG------------------~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG------------------GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC------------------CCCcceEECCC
Confidence 22 2223457788999999999987532 34556654433 23468889999
Q ss_pred CcEEEEE-ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccc
Q 001159 987 QTHLLVV-HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1064 (1135)
Q Consensus 987 g~~l~~~-~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1064 (1135)
|...+++ .++.|-..|. .+ ....+.........-..+--+|.|+.-++....+.+..||-.+..-+ +.... .
T Consensus 200 Gsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eypLP----g 273 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYPLP----G 273 (353)
T ss_pred CcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eeeCC----C
Confidence 9988874 5666666666 33 33333333322233445556677887777777788888887764422 11111 0
Q ss_pred cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1065 YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
. . ..+.++.-.. .+..-.+--..|.|.-+|..+.+
T Consensus 274 s--~--arpys~rVD~-~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 274 S--K--ARPYSMRVDR-HGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred C--C--CCcceeeecc-CCcEEeeccccCceeecCcccce
Confidence 0 1 1122222222 23344445556778778877766
No 439
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.35 E-value=13 Score=39.77 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCceEEEEeecCCCEEEEEeCCeE-EEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-cccceee
Q 001159 841 EESAACIALSKNDSYVMSASGGKV-SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDEVK 918 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i-~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd-~~~~~~~ 918 (1135)
...+..+..++||++++++..|.+ .-||--...-...-+.-..+|..|.|+| ++.+.+ ....|.|++=+ ....+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~-~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWM-LARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEE-EETTTEEEEEE-TTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEE-EeCCcEEEEccCCCCcccc
Confidence 566888889999999999986664 5677543211122222457899999999 666555 44889998887 2222221
Q ss_pred EE----ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe
Q 001159 919 TK----LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994 (1135)
Q Consensus 919 ~~----l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 994 (1135)
.. +..-.-.+..++|.+++...|+++. |+ .+...+.++.=. ...... ........+.|.++.+-++.+.
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~--~~~~~~---~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQ--KDRVGE---NVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-E--E-GGGT---TSSS---EEEEEETTEEEEE-S
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccce--ECcccc---CCCCceEEEEEcCCCceEEECC
Confidence 11 1122334889999999888886664 43 334445444111 111111 1114567899988888888899
Q ss_pred cCeEEEE
Q 001159 995 ESQISVY 1001 (1135)
Q Consensus 995 d~~v~vw 1001 (1135)
+|.+--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8887554
No 440
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=0.81 Score=55.26 Aligned_cols=145 Identities=12% Similarity=0.043 Sum_probs=93.5
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-----eeecC------CCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|+|... ...+.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 566677778877545556666668899998753211 11111 223455677887654 456777889999
Q ss_pred EEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc---cCCceeEEEecCCC
Q 001159 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTTR 600 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~i~~s~~~ 600 (1135)
++..+........--.-....++++|+|.|+.++.|- ..|++.-|... ++....+.+. ....|.+++|-...
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence 9886654333222222345789999999999999985 47788877653 4444444432 22368899998777
Q ss_pred CEEEE
Q 001159 601 NRFLA 605 (1135)
Q Consensus 601 ~~l~~ 605 (1135)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 77665
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.03 E-value=3.2 Score=46.65 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCeEEEEEcCCCCeEEEEc-----------CCC-cEEEEeCCCCc--eeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 926 NRITGLAFSPTLNALVSSG-----------ADA-QLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~-----------~D~-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
....+|+|.++|+++++.. ..+ .|.+++-..+. ..+...+.. +. .....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l----~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--EL----SMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CC----CCccceeEecCC-EEE
Confidence 3467899999998887753 223 57666554322 111112211 11 234789999999 444
Q ss_pred EEecCeEEEE-ecCCc------e--e-eccCCC-CCCCCCEEEEEEeeCCCEEEEEeCC-------------------Ce
Q 001159 992 VVHESQISVY-DSKLE------C--S-RSWSPK-DALPAPISSAIYSCDGLLVYAGFCD-------------------GA 1041 (1135)
Q Consensus 992 ~~~d~~v~vw-d~~~~------~--~-~~~~~~-~~h~~~i~~~~~s~d~~~l~~~~~d-------------------g~ 1041 (1135)
+. ...|..| |..+. . + ..+... ..+......++|.|||.+.++-+.. |.
T Consensus 87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 43 4445444 54221 1 1 112111 0013446789999999876654421 34
Q ss_pred EEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC
Q 001159 1042 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1042 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 1093 (1135)
|.-++.++++... +. ..-..+..++|+| +|+++++-..++
T Consensus 166 i~r~~pdg~~~e~-~a----------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLRV-VA----------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEEE-Ee----------cCcCCCccceECC-CCCEEEEccCCC
Confidence 5555555443221 11 1125567899998 678877755444
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.50 E-value=0.13 Score=59.90 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=70.4
Q ss_pred EeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEE-----------EecCCCcEEEEEeCCCcEEEEEcc-c
Q 001159 848 ALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA-----------FHPQDNNIIAIGMEDSSVQIYNVR-V 914 (1135)
Q Consensus 848 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~-----------~sp~~~~~lasg~~dg~v~iwd~~-~ 914 (1135)
-|.++.-++..+. +++|++.+..+... ..+.+|...++.++ +|| ||..+|++..||.+++|-+. +
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeee
Confidence 3444666777776 68888776654322 44555776655543 688 89999999999999988754 2
Q ss_pred c----eeeEEecCcCC-CeEEEEEcCC-------C--CeEEEEc-CCCcEEEEeCCCCcee
Q 001159 915 D----EVKTKLKGHQN-RITGLAFSPT-------L--NALVSSG-ADAQLCMWSIDKWEKL 960 (1135)
Q Consensus 915 ~----~~~~~l~~h~~-~i~~l~~s~d-------~--~~l~s~~-~D~~i~iwd~~~~~~~ 960 (1135)
| .++...+.|.+ +-.|.-|... + .++++++ .+..+++|....++++
T Consensus 268 g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 35566677773 3333334322 1 2344443 4567999998888754
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.45 E-value=3.3 Score=46.51 Aligned_cols=151 Identities=11% Similarity=0.025 Sum_probs=80.8
Q ss_pred CCeEEEEEecCCCcEEEEEe-----------CCC-cEEEEEccc--ce--eeEEecCcCCCeEEEEEcCCCCeEEEEcCC
Q 001159 883 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD 946 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 946 (1135)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+........+|++.++| ++++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 3567888988 777666532 223 677776432 32 223443334456889999998 5554 444
Q ss_pred CcEEEEeCCCCcee---ceeeeecCCCC-CCCCCCceEEEECCCCcEEEE-Eec-------------------CeEEEEe
Q 001159 947 AQLCMWSIDKWEKL---KSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1002 (1135)
Q Consensus 947 ~~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~v~vwd 1002 (1135)
...++.|.+..... ....+...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334455432111 11122222211 001134678999999987776 411 2344444
Q ss_pred cCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 1003 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 1003 ~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
..+..+..+.. + ......++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEec--C-cCCCccceECCCCCEEEEccCC
Confidence 44444443322 2 2344689999999987764433
No 444
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.42 E-value=13 Score=43.18 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=56.4
Q ss_pred EECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC
Q 001159 867 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 946 (1135)
Q Consensus 867 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 946 (1135)
.|+-.|.....+ .|.+.|..+.... .+..|..-...-.+.++|+.+.+....+. -.+-+.|-|-...++.-+.|
T Consensus 323 vdli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 455555554444 4888888888887 45555555555678888988765322222 13457788988889888888
Q ss_pred CcEEEEeCCCCce
Q 001159 947 AQLCMWSIDKWEK 959 (1135)
Q Consensus 947 ~~i~iwd~~~~~~ 959 (1135)
.....|+++..+.
T Consensus 397 nl~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQ 409 (1636)
T ss_pred ceEEEecCCcchh
Confidence 7555557766554
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.14 E-value=4.5 Score=45.86 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=86.6
Q ss_pred CCceEEEEeecCCCEEEEEe----CCeEEEEECCCccEEEEEeCCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEEc
Q 001159 841 EESAACIALSKNDSYVMSAS----GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~----dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~lasg~~dg~v~iwd~ 912 (1135)
-.++..++|. ||+.++-.. +|.+++=|- +.+..|+ .|..+.|+|- ...+|| .-....|.+|-+
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqFE----hV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQFE----HVHGLSWAPPCTADTPALLA-VQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeeccc----eeeeeeecCcccCCCCceEE-EeccceEEEEEe
Confidence 3467788886 555444332 455544332 3344443 6888999883 124555 556778999987
Q ss_pred c-----cceeeEEecCcCC-----CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEE
Q 001159 913 R-----VDEVKTKLKGHQN-----RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 982 (1135)
Q Consensus 913 ~-----~~~~~~~l~~h~~-----~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 982 (1135)
. +++.+..-..+-. --.+..|+|....|+.-.....-.+.++......-..- ..+ .+.|.+.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~----~G~IhCAC 162 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKT----SGLIHCAC 162 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccC----CceEEEEE
Confidence 6 2232222111111 12457899998888876666555566665543211111 111 15689999
Q ss_pred ECCCCcEEEEEec--CeEEEEec
Q 001159 983 FHNDQTHLLVVHE--SQISVYDS 1003 (1135)
Q Consensus 983 ~s~dg~~l~~~~d--~~v~vwd~ 1003 (1135)
|..||+.|+++-+ =.-+|||-
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecC
Confidence 9999999998544 34578987
No 446
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.09 E-value=2.2 Score=46.13 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEE-E-eCCCC----CeE-EEEEecCCCcEEEEEeCCCcEEEE-Ec
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-F-MSPPP----AAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~-~-~~h~~----~v~-~l~~sp~~~~~lasg~~dg~v~iw-d~ 912 (1135)
...+..+-..|||+.+.+-+..++.|+++.+...... + ....+ .|+ ++..-. +|.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 6678889999999999988888999999876543221 1 11111 122 222233 67778889999998877 44
Q ss_pred ccc-e----eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 913 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 913 ~~~-~----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
..+ . .++.++-...++..+.--.+.+-+++-+..|++..+.....+.+-. .... .....+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---ERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh---hhhh------cCcceeeeCccc
Confidence 322 1 2222332234454444334456778888889988876555442211 1111 345689999999
Q ss_pred cEEEEEecCeEEEEec
Q 001159 988 THLLVVHESQISVYDS 1003 (1135)
Q Consensus 988 ~~l~~~~d~~v~vwd~ 1003 (1135)
.++++-..+.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999988
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.83 E-value=11 Score=45.03 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=76.5
Q ss_pred ceEEEEEcC--CCCeEEEEeCCCeEEEEEeCC-------C----------CceeeeeEeecccCCEEEEEEe--cCCCeE
Q 001159 410 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQL 468 (1135)
Q Consensus 410 ~V~~v~~sp--d~~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~l~~h~~~v~~v~~s--~d~~~~ 468 (1135)
.|+.+...- +...|+.|..||.|.+|.+++ . ..+++...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997631 0 0112222332 34478999998 5555
Q ss_pred EEEEEcCCCcEEEEEcCCC--eeee-eecCCCCCeeEEEeeccCC---cc-EEEEEEcCCeEEEEeC
Q 001159 469 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~s~dg~i~iwd~ 528 (1135)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765432 2111 1112566799999987652 22 7888999999999887
No 448
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.83 E-value=18 Score=46.78 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=88.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|-..++.|.-+|+|.+ += -.|+.++.||..... |... -......++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~-lR--lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQ-LR--LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCe-EE--eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 4445666777777764 32 246788888876553 2210 012344566666666777666
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC------ee--eeeecCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~--~~~~~~h 496 (1135)
.++. .+-|+..+.... ..-..|.+...+++|.- .+.++.+..++.+|++... ++ ...+.+.
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 133555443211 12235778888899983 4677777778899998753 11 1233344
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
.....+|.+++ ..|+.+..+|.++.=++...
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~~ 518 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPAA 518 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEecccccc
Confidence 44666777754 46888999999887776543
No 449
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.60 E-value=23 Score=38.38 Aligned_cols=209 Identities=10% Similarity=-0.041 Sum_probs=102.5
Q ss_pred CCceEEEEeecCCCEEEEEeCCe--EEEEECCCccE---------------EEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 001159 841 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKV---------------MTMFMSPPPAATFLAFHPQDNNIIAIGME 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~--i~vwd~~~~~~---------------~~~~~~h~~~v~~l~~sp~~~~~lasg~~ 903 (1135)
...|+++.+.+..+.|++-+++. ++++++..... ....-+|......+++.......++.+..
T Consensus 42 ~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~ 121 (302)
T smart00036 42 RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVAL 121 (302)
T ss_pred cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEc
Confidence 77899999999999888887655 99999854331 01122344444444444312223334445
Q ss_pred CCcEEEEEcccc----eeeEEe---c-CcCCCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCC--CceeceeeeecCCCC
Q 001159 904 DSSVQIYNVRVD----EVKTKL---K-GHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGR 971 (1135)
Q Consensus 904 dg~v~iwd~~~~----~~~~~l---~-~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~--~~~~~~~~~~~~~~~ 971 (1135)
..+|.++..... ...+.+ . .-..++..+..+++ ...+..|+..+-..+.++.. ..... ..+......
T Consensus 122 ~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d-~sl~~~~~~ 200 (302)
T smart00036 122 QSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED-LSLPFLSEE 200 (302)
T ss_pred CCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc-ccccccccc
Confidence 566777654321 111111 0 01123444443433 34566665532344555432 11000 000000000
Q ss_pred CCCCCCceEEEECCCCcEEEEEecCeEEEEecCC-ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 972 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
. .....++..-+++.+| .+.+....+-|..| ...+..... -.....++++.. .+|++-. +..|.|+++.++
T Consensus 201 ~--~~~p~~i~~l~~~e~L-lc~~~~~v~Vn~~G~~~~r~~~l~--w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 T--SLKPISVVQVPRDEFL-LCYDEFGVFVNLYGKRRSRNPILH--WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred c--ccCceEEEEECCCeEE-EEECcEEEEEeCCCCccccceEEE--cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCC
Confidence 0 0022334334444444 44455555566655 222211000 034456777663 5666554 566999999999
Q ss_pred eeeeeeCC
Q 001159 1051 RFRCRIGP 1058 (1135)
Q Consensus 1051 ~~~~~~~~ 1058 (1135)
+++.++..
T Consensus 273 ~l~q~i~~ 280 (302)
T smart00036 273 ELLQELAD 280 (302)
T ss_pred ceEEEEec
Confidence 98887763
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=91.36 E-value=14 Score=43.27 Aligned_cols=185 Identities=9% Similarity=0.007 Sum_probs=92.3
Q ss_pred CCcEEEEEeCCC-----cEEEEEcccceee--EEecCcCCCeEEEEEcCCCCeEEEEcCC--CcEEEEeCCCCceeceee
Q 001159 894 DNNIIAIGMEDS-----SVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKSRF 964 (1135)
Q Consensus 894 ~~~~lasg~~dg-----~v~iwd~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D--~~i~iwd~~~~~~~~~~~ 964 (1135)
++.++++|+.++ .+..||..+++-. ..+.........+ .-+++..+.||.+ ..+..||..+++-. .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~---~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWV---N 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEE---E
Confidence 556777787643 5777887765422 2222111112222 2477888888764 35777887654311 1
Q ss_pred eecCCCCCCCCCCceEEEECCCCcEEEEE-ec---CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001159 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1040 (1135)
Q Consensus 965 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d---~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg 1040 (1135)
+..... . .....+..-+|+..+.| .+ ..+..||.....-....+... .. -...+..-+|++.+.|+
T Consensus 346 ~~~l~~-~----r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r-~~~~~~~~~~~IYv~GG--- 415 (480)
T PHA02790 346 MPSLLK-P----RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY-PH-YKSCALVFGRRLFLVGR--- 415 (480)
T ss_pred CCCCCC-C----CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-cc-ccceEEEECCEEEEECC---
Confidence 111110 0 01112223456666664 22 457788884333332222110 11 11223346777777774
Q ss_pred eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC-----CcEEEEecCCCc
Q 001159 1041 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAE 1104 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~v~~W~~~~~~ 1104 (1135)
.+.+||.++++-...-. .+. .. ...-++.. ++++.+.||.+ .++..||..+.+
T Consensus 416 ~~e~ydp~~~~W~~~~~----m~~---~r-~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDD----PIY---PR-DNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCC----CCC---Cc-cccEEEEE---CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 57889988765542211 111 11 11112222 56788888865 357788887655
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=21 Score=42.01 Aligned_cols=217 Identities=10% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
+.+-+|..+|....=++ +..-.|+|+++. |..+.+ ++-.|. .+-.+.|+.+..+| +.
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~------------------~~w~~~-~lI~mgWs~~eeLI-~v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGR------------------ILWKHG-ELIGMGWSDDEELI-CV 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchHH------------------HHhcCC-CeeeecccCCceEE-EE
Confidence 35556666664321122 233468888875 444332 112233 78899999776655 55
Q ss_pred eCCCeEEEEEeCCCCceeee-eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE-EEcCCCeeeeeecC---CCCCee
Q 001159 427 FSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV-WDVVAGRKQYTFEG---HEAPVY 501 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~---h~~~v~ 501 (1135)
..+|++++|++-... +... .........|..+.|..+|= .+.+. +|.+.+ -+.... .++++.. ..-+-.
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~-~~~~~~diP~~~~~~~ 174 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP-KLRKMPDIPYNELPKS 174 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc-hhhhCCCCCCccCCCc
Confidence 699999999987532 1110 01122233466666666653 33333 333433 332221 2222221 111111
Q ss_pred EEE-eeccCCccEEEEEE-cCCeEEEEeCcCCC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 502 SVC-PHHKESIQFIFSTA-IDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 502 ~i~-~~~~~~~~~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
|-. +.|......++-.. ..+ ..++-.+... ....+......+..+..||+.++|+.-.. .|.|.+-+....+
T Consensus 175 ~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 175 CWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQ 249 (829)
T ss_pred ceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhh
Confidence 111 11111101111111 000 0111111111 11122233457788999999999987653 7788888887777
Q ss_pred EEEEeecccCCceeEEEec
Q 001159 579 IKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s 597 (1135)
....+.......-..++|.
T Consensus 250 ~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 250 ILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred hhhccCCCCCCchHhceee
Confidence 7776664333222234444
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.27 E-value=0.15 Score=59.34 Aligned_cols=199 Identities=11% Similarity=0.144 Sum_probs=111.5
Q ss_pred CCceEEEEeec-CCCEEEEEe-CCeEEEEECC--CccEEEEEe-----CCCCC---eEEEEEecCCCcEEEEEeCCCcEE
Q 001159 841 EESAACIALSK-NDSYVMSAS-GGKVSLFNMM--TFKVMTMFM-----SPPPA---ATFLAFHPQDNNIIAIGMEDSSVQ 908 (1135)
Q Consensus 841 ~~~i~~l~~s~-dg~~la~~~-dg~i~vwd~~--~~~~~~~~~-----~h~~~---v~~l~~sp~~~~~lasg~~dg~v~ 908 (1135)
.+.+..+.|.. +-..++ . -|.+.|||+. .|+....+. ..... |..+-|-+ ..-++..+..+++|+
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCcee
Confidence 45555566543 111111 2 2678888875 343332221 12222 44444445 456777788889999
Q ss_pred EEEcccceeeEEecCcCCCeEEEE-----------EcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCC
Q 001159 909 IYNVRVDEVKTKLKGHQNRITGLA-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 977 (1135)
Q Consensus 909 iwd~~~~~~~~~l~~h~~~i~~l~-----------~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1135)
+..+++... ..+++|+..++.++ .||||+.+|+++.||.+++|.+.-......+++..-..|.. .+
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 887765432 44667877766554 58999999999999999999876544444445544444432 11
Q ss_pred ceEEEECCC-------C--cEEEEE--ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCC------------EE
Q 001159 978 ETKVQFHND-------Q--THLLVV--HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LV 1033 (1135)
Q Consensus 978 v~~~~~s~d-------g--~~l~~~--~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~------------~l 1033 (1135)
-.|..|+.. + .+++++ -+..+++|.- ..+|+..+. ...|..+. -+||+ .+
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHH
Confidence 122223322 1 233343 2567888887 666653322 22344444 33343 23
Q ss_pred EEEeCCCeEEEEECCCce
Q 001159 1034 YAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1034 ~~~~~dg~I~vwd~~~~~ 1051 (1135)
+.-+-|+.|.+|.-..-.
T Consensus 360 v~r~v~~~i~~~qn~~a~ 377 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNRKAQ 377 (1283)
T ss_pred HHhhhHHHHHHhhcchhh
Confidence 445668888888766533
No 453
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.17 E-value=18 Score=38.85 Aligned_cols=189 Identities=13% Similarity=0.118 Sum_probs=100.7
Q ss_pred eEEEEeecCCCEEEE--Ee-C----------CeEEEEECCCccEEEEEeCC------CCCeEEEEEecCCC----cEEEE
Q 001159 844 AACIALSKNDSYVMS--AS-G----------GKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDN----NIIAI 900 (1135)
Q Consensus 844 i~~l~~s~dg~~la~--~~-d----------g~i~vwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~----~~las 900 (1135)
|..+...+++++-+. |. + -+|.+||+.+.+.++++.-+ .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 26899999999998887532 34577888876222 23433
Q ss_pred Ee-CCCcEEEEEcccceeeEEecCcC-------------------CCeEEEEEcC---CCCeEEEEcCCCcEEEEeCCCC
Q 001159 901 GM-EDSSVQIYNVRVDEVKTKLKGHQ-------------------NRITGLAFSP---TLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 901 g~-~dg~v~iwd~~~~~~~~~l~~h~-------------------~~i~~l~~s~---d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
+. ..+-|.++|+.+++.-+.+..+. +.+.+++.+| |+++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 34579999999887655443221 2356666655 566666554333 234444321
Q ss_pred ceece-----e----eeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCC----ceeeccCCCCCCCCCEEE
Q 001159 958 EKLKS-----R----FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISS 1023 (1135)
Q Consensus 958 ~~~~~-----~----~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~----~~~~~~~~~~~h~~~i~~ 1023 (1135)
-.... . .++.. |... .....++++++|.++++ ...+.|..|+..+ +....+......-..+.+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 10000 0 00000 1100 23457888999988888 5889999999944 122222222111346688
Q ss_pred EEEee--CCCEEEEE
Q 001159 1024 AIYSC--DGLLVYAG 1036 (1135)
Q Consensus 1024 ~~~s~--d~~~l~~~ 1036 (1135)
+++.+ +|.+.+..
T Consensus 239 ~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEE-T--TS-EEEEE
T ss_pred eeeccccCceEEEEE
Confidence 88888 77765554
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.84 E-value=8.5 Score=42.63 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=91.6
Q ss_pred EEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCC------ccEEEEEEcCCeEEEEeCcCCC
Q 001159 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES------IQFIFSTAIDGKIKAWLYDYLG 532 (1135)
Q Consensus 459 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~------~~~l~s~s~dg~i~iwd~~~~~ 532 (1135)
+-...+...+++..|+....++-.|++.|+.+-.+..|..- -+.|.|... .+.| .|-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccC
Confidence 33333444446667888888999999999999999877765 455555431 1334 44455555556666544
Q ss_pred ceeEecCCCCcEEEEEEc----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC
Q 001159 533 SRVDYDAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 608 (1135)
............+.-.|+ ...-++++++. .|-|++||--.-.....+.+..+ .|..+..+.+|+++++.+.
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK 623 (776)
T ss_pred CceeeeeehhccccccccccccccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec
Confidence 332222122222222222 23447888775 66799999544333344555444 7888999999999888765
Q ss_pred CCeEEEEECC
Q 001159 609 EFQIKFWDMD 618 (1135)
Q Consensus 609 dg~i~iwd~~ 618 (1135)
..+.+-|+.
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 466666654
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=7.5 Score=42.42 Aligned_cols=154 Identities=9% Similarity=0.071 Sum_probs=92.9
Q ss_pred CccEEEEEeCCC------CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eeeEEecCcCCCeEEEEEcCCCCeEE
Q 001159 871 TFKVMTMFMSPP------PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLKGHQNRITGLAFSPTLNALV 941 (1135)
Q Consensus 871 ~~~~~~~~~~h~------~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~i~~l~~s~d~~~l~ 941 (1135)
+|...+.+..|. ..-+.+-|.. .++.| .+...|.+.=|.+..- -++..-....++|.++.||+|.+.||
T Consensus 5 sGalyhelihhPslfcnipesngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilA 82 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILA 82 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEE
Confidence 444545554343 2345566654 33333 3445556666665421 12222223467999999999999999
Q ss_pred EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec--CCceeeccCCCCCCCC
Q 001159 942 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPA 1019 (1135)
Q Consensus 942 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~ 1019 (1135)
.--.|.+|.+.+....+.... ....+......+...+|+.. .-+|.-.+..+.+|.. ..+.++.. ..|..
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~----~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~ 154 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLE----YTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNL 154 (657)
T ss_pred EEecCceEEEEecCCCchhhH----HHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhccc
Confidence 999999999999855432111 11112222255888899877 5556656666778877 34444333 23467
Q ss_pred CEEEEEEeeCCCEEE
Q 001159 1020 PISSAIYSCDGLLVY 1034 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~ 1034 (1135)
.|.-.+|.++-+.+.
T Consensus 155 nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 155 NVNWYMYCPETAVIL 169 (657)
T ss_pred CccEEEEccccceEe
Confidence 788888888877643
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.44 E-value=0.82 Score=31.87 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCeeEEEEecCCC--eEEEEEeccceEEEEEcCCc
Q 001159 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (1135)
Q Consensus 347 ~~V~~v~~sp~g~--~lla~g~~dg~i~iwd~~~~ 379 (1135)
+.|.+|+|||... .|||-.-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999997543 47888877899999999853
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.04 E-value=60 Score=40.55 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=104.7
Q ss_pred CCceEEEEee---c----CCCEEEEEeCCeEEEEECCCc---------------cEEEEEeC---CCCCeEEEEEecCCC
Q 001159 841 EESAACIALS---K----NDSYVMSASGGKVSLFNMMTF---------------KVMTMFMS---PPPAATFLAFHPQDN 895 (1135)
Q Consensus 841 ~~~i~~l~~s---~----dg~~la~~~dg~i~vwd~~~~---------------~~~~~~~~---h~~~v~~l~~sp~~~ 895 (1135)
..+|..++|+ . ..++|++-....+.|+...-. ..+..+.. -..+...++|.|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 7788899998 2 235777777888888872211 22333332 223577899999888
Q ss_pred cEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCC
Q 001159 896 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 975 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 975 (1135)
..||+.+..|...||++...... +. .... +.....|.| +.|.+.-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc------------------
Confidence 89999999999999999211110 11 1111 111122223 2222210
Q ss_pred CCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeC--CCEEEEEeCCCeEEEEECCCc
Q 001159 976 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 976 ~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d--~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
..-..+.|.++...|+++....+.++|+.................|..+.-+++ +..++. +...|...++.+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 123478888888899999899999999943333221112223568899998887 333333 2367888888773
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=90.00 E-value=34 Score=37.68 Aligned_cols=152 Identities=7% Similarity=-0.057 Sum_probs=82.6
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-e-eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-R-VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~-~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.+.+.++.+.+++ . ++..+..|.+..= .+.... - .........++++.+.++++.++++. .+.+.+=..
T Consensus 172 ~g~~~~i~~~~~g--~-~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDG--K-YVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCC--e-EEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccC
Confidence 4567788877642 4 4455555655421 122222 1 12223445788999999998877763 444443223
Q ss_pred CCCeEEEEeecc---cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-CCCcceEEEcCCCCEEEEE
Q 001159 575 SEGAIKRTYSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 575 ~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 650 (1135)
..|..-...... ....+..+.+.+++.. +.++.+|.+. ...+.++.......... ....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 1124677888887765 4455677665 45555655544432111 12466777777666655 5
Q ss_pred ECCCcEEEEE
Q 001159 651 TSDNGIKILA 660 (1135)
Q Consensus 651 ~~dg~i~iwd 660 (1135)
+..|.|..|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5677877765
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=3.9 Score=50.84 Aligned_cols=154 Identities=14% Similarity=0.208 Sum_probs=90.1
Q ss_pred eEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE--------cCCCC
Q 001159 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPDGL 421 (1135)
Q Consensus 350 ~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------spd~~ 421 (1135)
+.+-+-|.=.+..+| .|+.+.+|+++++..... +.+-...|..|.. -|.=+
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~Iq 140 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPEIQ 140 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhhhh
Confidence 334444433334554 488999999998655432 3344455555553 33334
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeee------eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC----CC---e
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG---R 488 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~------~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~----~~---~ 488 (1135)
++.+...--.|.|+-+.-.+..... ..+......|.|+....+|+ .+++ |.|| .+|.+. +| +
T Consensus 141 hlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg--~lyEl~Yq~~~gWf~~ 215 (1311)
T KOG1900|consen 141 HLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG--NLYELVYQAEDGWFGS 215 (1311)
T ss_pred eeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC--CEEEEEEeccCchhhc
Confidence 5555555556777655432211111 12222345689999888887 4554 4566 555442 11 1
Q ss_pred -e----------------eeeec-CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 489 -K----------------QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 489 -~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
+ +..+. .+..+|..+.+..+. ..+.+-+..|+|.+||+...
T Consensus 216 rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 216 RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 1 11223 567799999986554 78999999999999998763
No 460
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.73 E-value=35 Score=40.32 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 899 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~la 899 (1135)
...+..++|.-....+|++..+.|++|-..+..-.....-.-..+.-+.|+|.....|.
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 34455666766666777777889999998765433333334456778899984333333
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.65 E-value=31 Score=39.29 Aligned_cols=277 Identities=16% Similarity=0.105 Sum_probs=137.3
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+....+|.++.+.-.|. + -+|+.|| +..||..+++.+....- .-...|.++.-+-.|+
T Consensus 161 ll~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~- 218 (671)
T COG3292 161 LLKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR- 218 (671)
T ss_pred cccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc-
Confidence 33567899999999997 3 3466665 56678777766542100 1114455555555554
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCCC--CC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHE--AP 499 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~--~~ 499 (1135)
|.+|+.+| |.+.+..+.+....- ..--.+.|..+.=..+|. +-.|+..|-.+. ....+..... .+-|. ..
T Consensus 219 LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~ 291 (671)
T COG3292 219 LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVST 291 (671)
T ss_pred EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccc
Confidence 56677777 777766652111000 000122344433333443 455555553322 2222222221 22222 23
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC--CCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
|.++.. +.+ .-+-+++.+|.+++=+-+-..........+..+...+.+| .+..+.... ..+.+.+-+..+|
T Consensus 292 vnsL~~--D~d-GsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG 364 (671)
T COG3292 292 VNSLWL--DTD-GSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTG 364 (671)
T ss_pred ccceee--ccC-CCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCC
Confidence 444433 333 3466677676666543221111111111121222222222 111222111 1334666667778
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
..+++...-....|+..++..+ ..+-.++...-+..|+..+ +.......+. ....|..+.=.|+++ |..|+.+|.+
T Consensus 365 ~~v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glv 441 (671)
T COG3292 365 ELVRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLV 441 (671)
T ss_pred cEEEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeE
Confidence 8777766555556777778774 4566666554455677666 3333333322 224677788888887 6778888765
Q ss_pred EE
Q 001159 657 KI 658 (1135)
Q Consensus 657 ~i 658 (1135)
+.
T Consensus 442 k~ 443 (671)
T COG3292 442 KR 443 (671)
T ss_pred ec
Confidence 54
No 462
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.52 E-value=1.1 Score=31.24 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEEccc
Q 001159 883 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 883 ~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~ 914 (1135)
++|.++.|||..+ .+||.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999998899999999985
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.27 E-value=18 Score=39.85 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCc------EEEEEccc--c--eee-----EEecCcCC--------CeEEEEEcCCCC
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D--EVK-----TKLKGHQN--------RITGLAFSPTLN 938 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~i~~l~~s~d~~ 938 (1135)
-+.+..+++.++++ .+++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35678899987344 4555667777 66555543 1 111 11222222 234788888898
Q ss_pred eEEEEcCC------CcEEEEeCCCCceeceeeeecCC-------CCCCCCCCceEEEECCCCcEEEEE------ecC--e
Q 001159 939 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 997 (1135)
Q Consensus 939 ~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~--~ 997 (1135)
++++.=.+ ..|..++.+ +.......+.... .........-.++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887667 778888876 4443332222111 111222567799999999955542 132 1
Q ss_pred -------EEEEec--C--CceeeccCCC-CC-----CCCCEEEEEEeeCCCEEEEEe-----CCCeEEEEECC
Q 001159 998 -------ISVYDS--K--LECSRSWSPK-DA-----LPAPISSAIYSCDGLLVYAGF-----CDGAIGVFDAE 1048 (1135)
Q Consensus 998 -------v~vwd~--~--~~~~~~~~~~-~~-----h~~~i~~~~~s~d~~~l~~~~-----~dg~I~vwd~~ 1048 (1135)
++++.. . +.....+... +. ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 555554 2 2222222111 11 356789999999999877532 23345555544
No 464
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=30 Score=35.88 Aligned_cols=166 Identities=12% Similarity=0.046 Sum_probs=98.2
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
+....-.+-+..+.++.+ ++..+..+.-++|.|+.+........+ +. -.+--.++.. .
T Consensus 80 ~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~----------------ln-t~gyaygv~v--s 137 (370)
T COG5276 80 LSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGF----------------LN-TDGYAYGVYV--S 137 (370)
T ss_pred EEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceecc----------------cc-CCceEEEEEe--c
Confidence 334445667788888866 344556677899999987654332111 11 1123334444 6
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC---
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH--- 496 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--- 496 (1135)
|++..++..|.-..+.|+.+.........+..-...-..++.| |+ +-..+..|+-+.+-|+.+..... |.+|
T Consensus 138 Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~ 212 (370)
T COG5276 138 GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWRDGGLTIVDVSNPHSPV-LIGSYNT 212 (370)
T ss_pred CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEeCCCeEEEEccCCCCCe-EEEEEec
Confidence 8888888866668889998876544333343344445677777 44 45566678889999987654322 2222
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 536 (1135)
...+.++..+++ +....-.+--+.+-|....+....
T Consensus 213 g~g~~sv~vsdn----r~y~vvy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 213 GPGTYSVSVSDN----RAYLVVYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred CCceEEEEecCC----eeEEEEcccceEEEecCCCCCceE
Confidence 235677766543 334444455566667666654443
No 465
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.15 E-value=9.1 Score=45.59 Aligned_cols=174 Identities=12% Similarity=0.110 Sum_probs=93.0
Q ss_pred CCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEE
Q 001159 853 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 932 (1135)
Q Consensus 853 g~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~ 932 (1135)
+.+++++..+.|.||+........ ...++..+...| .. +...|+.+..|- ..|. |+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 788888889999999986532211 011122222222 11 122333332221 1121 23332
Q ss_pred Ec--CCCCeEEEEcCCCcEEEEeCCCCc--------ee---ceeeeecCCCCCCCCCCceEEEEC--CCCcEEEEEe-cC
Q 001159 933 FS--PTLNALVSSGADAQLCMWSIDKWE--------KL---KSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVVH-ES 996 (1135)
Q Consensus 933 ~s--~d~~~l~s~~~D~~i~iwd~~~~~--------~~---~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~-d~ 996 (1135)
.. -+...|+.|..||.|.+|.++.-- .. ..+....+.-+......+..++++ ...++||+++ ..
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 244577777888888888653200 00 000000011111122467888988 8888999965 45
Q ss_pred eEEEEecCC-ceeeccCCCCCCCCCEEEEEEeeCC---C---EEEEEeCCCeEEEEEC
Q 001159 997 QISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDG---L---LVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 997 ~v~vwd~~~-~~~~~~~~~~~h~~~i~~~~~s~d~---~---~l~~~~~dg~I~vwd~ 1047 (1135)
.|.||-... ...........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 677776622 1111111123356788999997644 2 7888999999999888
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.01 E-value=1.4 Score=30.25 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecc--ceEEEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~d--g~i~iw 374 (1135)
....-.+..|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455788999999999988888877 776666
No 467
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.82 E-value=66 Score=39.35 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCC----------ccE--E-EEE--------eCCCCCeEEEEEecC--CCcE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMT----------FKV--M-TMF--------MSPPPAATFLAFHPQ--DNNI 897 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~----------~~~--~-~~~--------~~h~~~v~~l~~sp~--~~~~ 897 (1135)
.-.|..+.++|+|++||..+...|.|..+.. ++. . +++ ..+...|..+.|+|. .+..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 6789999999999999999876666666532 111 1 111 123457899999993 2578
Q ss_pred EEEEeCCCcEEEEEcccc
Q 001159 898 IAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 898 lasg~~dg~v~iwd~~~~ 915 (1135)
|++-+.|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888999999999999753
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.41 E-value=3.8 Score=51.02 Aligned_cols=144 Identities=12% Similarity=0.174 Sum_probs=92.8
Q ss_pred eCCCcEEEEEcccceeeEEecCcCCCeEEEEE--------cCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC--
Q 001159 902 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF--------SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-- 971 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~--------s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-- 971 (1135)
+.|+.+.+|+.+++.....+.+-+..|..|.. -|.=++|...+.--.|.++-+.-.+...... ....+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~--~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS--IFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc--cccccee
Confidence 46889999999998777788777777777653 3333455555555567777654333211110 00000
Q ss_pred -CCCCCCceEEEECCCCcEEEEEecCeEEEEec-----C---Cc-ee-------------eccCCC-CCCCCCEEEEEEe
Q 001159 972 -QSPLVGETKVQFHNDQTHLLVVHESQISVYDS-----K---LE-CS-------------RSWSPK-DALPAPISSAIYS 1027 (1135)
Q Consensus 972 -~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-----~---~~-~~-------------~~~~~~-~~h~~~i~~~~~s 1027 (1135)
......|.++....+|+.+.+|.||. +|.+ + ++ |. ..+... ..+..+|..++..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 00114678888899999999998884 4444 1 11 10 011111 2456799999998
Q ss_pred eCCCEEEEEeCCCeEEEEECCC
Q 001159 1028 CDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1028 ~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
..-..|.+-++.|+|.+|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999987
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.25 E-value=2.6 Score=41.23 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.8
Q ss_pred cceEEEEEcCCC------CeEEEEeCCCeEEEEEeCC
Q 001159 409 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 409 ~~V~~v~~spd~------~~las~~~dg~i~iwd~~~ 439 (1135)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 2788889999999998765
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.22 E-value=45 Score=36.67 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=33.6
Q ss_pred cEEEEEEc-----CCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 512 QFIFSTAI-----DGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 512 ~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
.+.+.|+. ...+..||+.+.+-...-.... ......+..-+++..+.++.+......+..||+.+.+-
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 56666654 2457788877654332211111 12222223345566666664322123467889887654
No 471
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.90 E-value=11 Score=41.70 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=89.5
Q ss_pred CCcEEEE-EeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC--------CeEEEEcCCCcEEEEeCCC-Cceecee
Q 001159 894 DNNIIAI-GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSIDK-WEKLKSR 963 (1135)
Q Consensus 894 ~~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~--------~~l~s~~~D~~i~iwd~~~-~~~~~~~ 963 (1135)
+..+|.. |..-..++-.|++.|+.+..+.-|.+- -+.|.|+. +.|+-.|..+ |.-.|..- +..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCceeee
Confidence 5555543 445567888899999999999888775 46777753 4555555444 33333332 2222211
Q ss_pred eeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeE
Q 001159 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 964 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I 1042 (1135)
......+.. . .+......+.|+|+ +..|.|++||--+....+..+. .+..|..+..+.+|+++++.+ ...+
T Consensus 555 esKdY~tKn----~-Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 555 ESKDYKTKN----K-FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eehhccccc----c-ccccccccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceE
Confidence 111111111 1 12222344567777 6789999999844444443333 277899999999999988654 4567
Q ss_pred EEEECC--Cceeeeee
Q 001159 1043 GVFDAE--TLRFRCRI 1056 (1135)
Q Consensus 1043 ~vwd~~--~~~~~~~~ 1056 (1135)
.+-|+. .|+...++
T Consensus 627 lL~d~~ik~g~~aGr~ 642 (776)
T COG5167 627 LLTDVPIKYGQPAGRD 642 (776)
T ss_pred EEEecccccCCccccc
Confidence 777754 34444444
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.82 E-value=43 Score=35.94 Aligned_cols=167 Identities=12% Similarity=0.097 Sum_probs=91.1
Q ss_pred cEEEEEcCCCeeeeeecC------CCCCeeEEEeeccCC----ccEEEEEEcCCeEEEEeCcCCCceeEecCC-------
Q 001159 478 MIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------- 540 (1135)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------- 540 (1135)
.|.+||+.+++.++++.- ..+....+.+..... +-..++=+..+-|.++|+.+++....+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677889999988776642 245677777765332 233444455578999999886654433221
Q ss_pred ------------CCcEEEEEEcC---CCCEEEEEecCCCCCCeEEEEECCC-----C---------eEEEEeecccCCce
Q 001159 541 ------------GNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESE-----G---------AIKRTYSGFRKRSL 591 (1135)
Q Consensus 541 ------------~~~i~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~---------~~~~~~~~~~~~~v 591 (1135)
...+..++.+| ++++|+..... . -.+|.+.+ . ..++.+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls---s--~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS---S--RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCC---C--CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255666655 66666655421 1 12232221 0 011111 2211244
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCC---ceEEEEeCCCC-CCCcceEEEcC--CCCEEEEE
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTVDADGG-LPASPRLRFNK--EGSLLAVT 650 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~ 650 (1135)
..++++++|..+++--..+.|..|+.... +....+..... ...+.++.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 56888999988888888999999998861 12233322222 34567788877 66554444
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.55 E-value=54 Score=36.87 Aligned_cols=198 Identities=12% Similarity=0.015 Sum_probs=106.2
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC-Ce
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PV 500 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v 500 (1135)
.+..+..+|.|.-.|..++..+-..... .....+..-.+..+|+ ++.++.++.++..|..+|+.+........ .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444467777777777777633211111 0011222223333675 77888899999999889998887765551 11
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
..-.... + ..++.++.++.+...|..++.......... ..+..-....++ .++.+..+ . ++.+.-.|..+|
T Consensus 146 ~~~~v~~--~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVVG--D-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDG 219 (370)
T ss_pred ecCcEEc--C-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCC
Confidence 1111111 1 344455577888888877777766543322 111111111222 33333311 1 446778888888
Q ss_pred eEEEEeecccCCceeE---EEecCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 578 AIKRTYSGFRKRSLGV---VQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~---i~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
......+......-.. ...... +..++.++.++.+...+..+++.+......
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8877643322111000 001111 123356667788999999999998888753
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=32 Score=33.77 Aligned_cols=173 Identities=14% Similarity=0.104 Sum_probs=91.8
Q ss_pred EEEEEcCC--CcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEE
Q 001159 469 CIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 469 ~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 546 (1135)
++.+.+.- ..|++||+.+|+.+..-.-....+..=-..-.++ .+-.-.=.+|.-..+|.++.++.-.+.-.+. =..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 56666543 4799999999987764332111111000000111 1222233577788888888777665443332 122
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee----cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS----GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~----~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
...|++.|+.+ ++..+++.-|+.+.....+.. +..-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 23556656654 346678888887655444333 2211123334443 454444444455666677778877
Q ss_pred EEEEeCC----------CCCCCcceEEEcCCCC-EEEEE
Q 001159 623 LTTVDAD----------GGLPASPRLRFNKEGS-LLAVT 650 (1135)
Q Consensus 623 ~~~~~~~----------~~~~~v~~~~~~~~~~-~l~~~ 650 (1135)
+..+... .+....+.+++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7665422 1223467899999774 44444
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.10 E-value=31 Score=37.89 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=62.6
Q ss_pred ceEEEEeecCCCEEEEEe-C------CeEEEEECCCccEEEEEe---------------CCCCCeEEEEEecCCCcEEEE
Q 001159 843 SAACIALSKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFM---------------SPPPAATFLAFHPQDNNIIAI 900 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~---------------~h~~~v~~l~~sp~~~~~las 900 (1135)
...++++.++|.++++.- + ..|+.++.. |+.+..+. ..+...-+|+++| +|+.|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 556788888888887765 5 678888876 66555441 1234578999999 7886666
Q ss_pred EeCC-----C--c-------EEEEEcc--c-ceee----EEecC-----cCCCeEEEEEcCCCCeEEE
Q 001159 901 GMED-----S--S-------VQIYNVR--V-DEVK----TKLKG-----HQNRITGLAFSPTLNALVS 942 (1135)
Q Consensus 901 g~~d-----g--~-------v~iwd~~--~-~~~~----~~l~~-----h~~~i~~l~~s~d~~~l~s 942 (1135)
+.+. + . ++|+... + ++.. ..+.. ....|+.+++-+++++|+-
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5432 2 1 5555444 3 2222 22332 3567899999999987764
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.33 E-value=45 Score=34.69 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=108.4
Q ss_pred cCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC--CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~ 530 (1135)
.+-+..+.++.+ +...+..+.-++|.|+.+......+.. -.+--.++.. .|++...+..|.-+.+.|+.+
T Consensus 86 ~~l~~Dv~vse~----yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v----sGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 86 RDLFADVRVSEE----YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV----SGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhheeEeccc----EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe----cCCEEEEeeccCcEEEEECCC
Confidence 345667778754 566677788899999987654332211 1233334433 337888888788888899887
Q ss_pred CCcee---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccCCceeEEEecCCCCEEE
Q 001159 531 LGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 531 ~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
.+... ...........++.|- ++-+.+.. ++-+.+-|+..... +..... +..+.++..+++..+++
T Consensus 158 pssP~lagrya~~~~d~~~v~ISG--n~AYvA~~----d~GL~ivDVSnp~sPvli~~~n~--g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAISG--NYAYVAWR----DGGLTIVDVSNPHSPVLIGSYNT--GPGTYSVSVSDNRAYLV 229 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEec--CeEEEEEe----CCCeEEEEccCCCCCeEEEEEec--CCceEEEEecCCeeEEE
Confidence 66543 3333444445666664 44443332 45588888765433 222222 22567777777655555
Q ss_pred EEeCCCeEEEEECCCCceEEEEeCCCCC--CCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 605 AAGDEFQIKFWDMDNMNMLTTVDADGGL--PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
... --+.+-|..+.+....+..-... ..++.+.. .+++......+.-+.+-|+.+.
T Consensus 230 vy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 230 VYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred Ecc--cceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 443 34667777766544444322222 12222333 4556666666666777777654
No 477
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.28 E-value=46 Score=39.71 Aligned_cols=194 Identities=12% Similarity=-0.007 Sum_probs=101.7
Q ss_pred CceEEEEeecCCCEEEEEe-CC-eEEEEECCCccE----EEEEeCCCCCeEEEEEecCCCcEEEEEeC--CC--cEEEEE
Q 001159 842 ESAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGME--DS--SVQIYN 911 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-dg-~i~vwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~--dg--~v~iwd 911 (1135)
..+.+++.|+++..+|... ++ .+.+..+..+.. ..... .....+.-.|.+ ++ ++-+... ++ .+++..
T Consensus 363 ~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 363 VPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence 3678899999999988877 44 576666533322 11111 133466677777 44 3434322 22 255554
Q ss_pred cccceeeEE-ecCcCC-CeEEEEEcCCCCeEEEEcC---CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 912 VRVDEVKTK-LKGHQN-RITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 912 ~~~~~~~~~-l~~h~~-~i~~l~~s~d~~~l~s~~~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
- +++.... .....+ .|+.+..|+||.+++.... .+.|.+=-+.....-. ..+..+..-......+..++|..+
T Consensus 440 ~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~ 517 (599)
T PRK13613 440 G-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGD 517 (599)
T ss_pred C-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCC
Confidence 3 4443211 112223 7999999999988776543 3455554443211100 111111100001135889999999
Q ss_pred CcEEEEE--ecCeEEEEec--CCceeeccCCCCCCCCCEEEEEEeeCCC-EEEEEeCCCeE
Q 001159 987 QTHLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1042 (1135)
Q Consensus 987 g~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~~~s~d~~-~l~~~~~dg~I 1042 (1135)
+.+++.+ .++...+|.+ .+.....-.. ..-..+.+++-..+.. .|+.+..++.|
T Consensus 518 ~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~--~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 518 SQLVVLGREEGGVQQARYVQVDGSTPPASAP--AAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CEEEEEeccCCCCcceEEEecCCcCcccccc--cCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 9988854 3334445554 4433221111 1134566777777666 45553555554
No 478
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.20 E-value=0.12 Score=56.23 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
....+.+.+.-+++++.+..+..||-.. +.+.. .. . .+....+++..++..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc-cC---C-chhHhhhhhccccchh
Confidence 4556777777788888887777775321 11110 11 2 5566678888888877
Q ss_pred EEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 68999999976432111111122222378999 88999999999999999988877776666699999999999
Q ss_pred CCCCeEEEEcCCCcEEE
Q 001159 935 PTLNALVSSGADAQLCM 951 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~i 951 (1135)
+.+. .+.++.|..+.+
T Consensus 169 lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSV 184 (615)
T ss_pred ccce-eeecCcHHHHHH
Confidence 8874 445555554443
No 479
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.03 E-value=3 Score=42.54 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=53.6
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCCceecee-ee-ecCCCC----CCCCCCceEEEECCCCcEEEEEecCeEEEEecCCc
Q 001159 933 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1006 (1135)
Q Consensus 933 ~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~ 1006 (1135)
+..++++|++...+|.+++||+.+.+..... .+ ...... ......|..+.++.+|.-+++-.+|..+.|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999998754332 11 111100 02226788899999999988877788999998555
Q ss_pred ee
Q 001159 1007 CS 1008 (1135)
Q Consensus 1007 ~~ 1008 (1135)
+-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
No 480
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.80 E-value=0.25 Score=53.78 Aligned_cols=140 Identities=16% Similarity=0.263 Sum_probs=95.4
Q ss_pred eecCCCCCCccccCCC------cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecc
Q 001159 319 SFAGVAHTPNVYSQDD------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392 (1135)
Q Consensus 319 ~~s~~g~~~~~~~~d~------~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 392 (1135)
.+-+.++.+++.+.+. ..++.+-.+..++.-..++|..+|..+++.+-..+.+.+||+.+...-.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--------- 111 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--------- 111 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---------
Confidence 3444455555544332 3445555555666777899999998777777888999999998643211
Q ss_pred cccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEE
Q 001159 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 393 ~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s 472 (1135)
+-.+-...-.-+.|++.+..++.+...|.+.|++..+.+... ....|...++++++.+.+. .+.
T Consensus 112 ----------LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil 175 (615)
T KOG2247|consen 112 ----------LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VIL 175 (615)
T ss_pred ----------HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eee
Confidence 001112222227899999999999999999999988765432 3334999999999999885 677
Q ss_pred EcCCCcEEEEE
Q 001159 473 CGDDKMIKVWD 483 (1135)
Q Consensus 473 ~~~d~~i~iwd 483 (1135)
++.|..+.+-.
T Consensus 176 ~dcd~~L~v~~ 186 (615)
T KOG2247|consen 176 CDCDNTLSVTT 186 (615)
T ss_pred cCcHHHHHHhh
Confidence 77777665544
No 481
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.67 E-value=41 Score=33.59 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=84.7
Q ss_pred cEEEEEeCCCcEEEEEcc--cceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC---C---cEEE---EeCCC--Cceece
Q 001159 896 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---A---QLCM---WSIDK--WEKLKS 962 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~---~i~i---wd~~~--~~~~~~ 962 (1135)
..|..+.....|.+|++. ..+.+.+|.. -+.|..++++..|++|+|-=.+ . .+|+ |+... ......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667889999988 3456667764 4889999999999999986432 2 4555 33331 111111
Q ss_pred eeee----cCCCCC----------CCCCCceEEEECCCCcEEEEEecCeEEEEecCCcee--ecc---CCC---CCC--C
Q 001159 963 RFIQ----APAGRQ----------SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS--RSW---SPK---DAL--P 1018 (1135)
Q Consensus 963 ~~~~----~~~~~~----------~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~--~~~---~~~---~~h--~ 1018 (1135)
+... ...... ....++.+++--|-..-|+++.++.+.+|.+..... ..+ ... -.| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1111 000000 011356677777877788888899999999833222 111 000 001 2
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 1019 APISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1019 ~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
.....++|.. .|+|..+ +-.++|+.+.
T Consensus 188 ~~p~~v~ic~--~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAICE--GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEEe--eEEEEec-CCEEEEEEEe
Confidence 2244455543 4777664 5567776653
No 482
>PLN02153 epithiospecifier protein
Probab=85.51 E-value=65 Score=35.75 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=15.1
Q ss_pred CCCeEEEEcCC-----CcEEEEeCCCCc
Q 001159 936 TLNALVSSGAD-----AQLCMWSIDKWE 958 (1135)
Q Consensus 936 d~~~l~s~~~D-----~~i~iwd~~~~~ 958 (1135)
++++++.||.+ ..+.++|..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56777777754 247778887644
No 483
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.35 E-value=27 Score=42.95 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=116.2
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
++..-|..+.+|+.+|.+.+|.+........... .. ++-.. ...-+ ..+|..+...+.-.++.+-
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~--------~~~~~-----~~~~~-kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT--------ETVKF-----EKEFS-KKPINKLLVCASLELLLIL 85 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc--------chhHH-----hhhhc-cchhHHHhhcchhcchhee
Confidence 3445577799999999999998765432111111 00 00000 00002 4667777777777777777
Q ss_pred eCCeEEEEECCCccEEEEEeCCCCCeEEEEEe--c-CCC--cEEEEEeCCC--cEEEEEcccceeeEEecCcCCCeEEEE
Q 001159 860 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH--P-QDN--NIIAIGMEDS--SVQIYNVRVDEVKTKLKGHQNRITGLA 932 (1135)
Q Consensus 860 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~s--p-~~~--~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~i~~l~ 932 (1135)
+|+.|.++++.+.+...... +...++..+.. + ..+ .+.+....-. ....|+-..+..+..--+-...+.+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 88999999887765521111 11111111110 0 011 1222222111 122333322222221111112222333
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCcee-ecc
Q 001159 933 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS-RSW 1011 (1135)
Q Consensus 933 ~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~~ 1011 (1135)
| .+..+.++-.+....+|.-.++...........+ . ..-..+.--+++..++.+.|+...+-|..|... +..
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~-~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDN-E----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeecccc-c----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 2444444433344444544443221111111110 0 122356666777777778888777778765552 111
Q ss_pred CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeee
Q 001159 1012 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1056 (1135)
Q Consensus 1012 ~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~ 1056 (1135)
... +....++. -+.-|+++- .++.|.||+..++.++.++
T Consensus 238 l~w---s~~P~~v~--~~~PYlIa~-~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LVW---SEVPLSVV--VESPYLIAL-LDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eEe---cccchhhc--ccCceEEEE-ccccEEEEeccCHHHhhcc
Confidence 000 11111122 234466654 5569999999999888776
No 484
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.25 E-value=71 Score=36.00 Aligned_cols=21 Identities=10% Similarity=-0.217 Sum_probs=12.1
Q ss_pred CCCeEEEEeC-CCeEEEEEeCC
Q 001159 419 DGLMLGVAFS-KHIVHLYTYNP 439 (1135)
Q Consensus 419 d~~~las~~~-dg~i~iwd~~~ 439 (1135)
+++..+.++. +..+.++|+..
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCC
Confidence 5555554443 45567777753
No 485
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.81 E-value=23 Score=40.37 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=39.1
Q ss_pred cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 924 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 924 h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
.-...++|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCc
Confidence 34567899999999888876556999999866543211111111100 0012577899999884
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.67 E-value=3.9 Score=44.38 Aligned_cols=170 Identities=11% Similarity=0.098 Sum_probs=94.3
Q ss_pred EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-Ee-cCcCC----CeE-EEEEcCCCCeEEEEcCC
Q 001159 874 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KL-KGHQN----RIT-GLAFSPTLNALVSSGAD 946 (1135)
Q Consensus 874 ~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l-~~h~~----~i~-~l~~s~d~~~l~s~~~D 946 (1135)
.+..+......|..+-..| ||++|..-+. .++.++++.+..... ++ ....+ .|+ ++..-..|.-|..+..|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3344555667788899999 8998887665 678899887543221 11 11111 122 22223456778888999
Q ss_pred CcEEEE-eCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEE
Q 001159 947 AQLCMW-SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSA 1024 (1135)
Q Consensus 947 ~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~ 1024 (1135)
|.|.-| |+..+....-..++..+- ...++..+.-....+-+++ ..+|++.++..+......+... -..+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l---~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKL---APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeecccc---CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCccee
Confidence 999887 444433211111111110 0122222222222233344 4667777766632222222211 2356678
Q ss_pred EEeeCCCEEEEEeCCCeEEEEECCCcee
Q 001159 1025 IYSCDGLLVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 1025 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
++||.+.+|++- ..|.|+++.+++..+
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999999875 567899999987543
No 487
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.34 E-value=45 Score=39.46 Aligned_cols=129 Identities=9% Similarity=0.123 Sum_probs=72.5
Q ss_pred eEEEECCCCcEEEE-EecC-----eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCcee
Q 001159 979 TKVQFHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
..+.|-|.|..+++ +.|+ .|..+..+|-....+....+-...+..++|.-....++.+ ..+.|.+|-..+...
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 45899999999999 5333 3666666555544443222224456667777666666654 567899999877544
Q ss_pred eeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001159 1053 RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1119 (1135)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~~~~~~~~~~~ 1119 (1135)
.-... .+.|. +. -+.|+|...+.|...+.. .|-.-++.....+-....|+|||.+.
T Consensus 329 YLK~e--~~ip~------~s--~vkwhpe~~nTl~f~d~~-~I~~V~f~~k~~~~~s~~p~d~g~~~ 384 (1243)
T COG5290 329 YLKVE--RQIPG------IS--YVKWHPEEKNTLLFRDGE-RILRVFFSEKKTHHGSEYPFDNGTSY 384 (1243)
T ss_pred EEEEe--ecCCC------cc--eeeeccccCcEEEEecCC-eEEEEEeehhhhcCCcccCccCCceE
Confidence 32211 11111 12 367888765555553332 33333333222223446688888664
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.23 E-value=33 Score=31.28 Aligned_cols=128 Identities=7% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec----
Q 001159 776 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---- 851 (1135)
Q Consensus 776 ~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~---- 851 (1135)
|..-.|......|++++..|.|.|++.......... ....+++.+. ...|++++-.+
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~LNi----------------n~~italaaG~l~~~ 61 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISFLNI----------------NQEITALAAGRLKPD 61 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeEEEC----------------CCceEEEEEEecCCC
Q ss_pred -CCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCC--cEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 852 -NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 852 -dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
+...|+.|+...+..||+.....+..-.-+ +.|.++.+-.-+. .-|+..+.+..|.-||.+..+...+..+
T Consensus 62 ~~~D~LliGt~t~llaYDV~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 62 DGRDCLLIGTQTSLLAYDVENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred CCcCEEEEeccceEEEEEcccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.22 E-value=17 Score=46.31 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=42.7
Q ss_pred CceEEEECCCCcEEEEEecCeEEEEecCCcee-eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCcee
Q 001159 977 GETKVQFHNDQTHLLVVHESQISVYDSKLECS-RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1052 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~-~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~ 1052 (1135)
++.+..+...+..+.....+.+.+|+...... ..+... ....+.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN--------GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc--------cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 34444455555555555556666666633322 222222 111188999999999999999999999865
No 490
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.74 E-value=1e+02 Score=36.50 Aligned_cols=387 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCC-------CcceEEEEEcC-----
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA-------AISVNRCVWGP----- 418 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp----- 418 (1135)
++..|.|+ .++.+..+|.+.|+.++. ...... ...+ ...|.+++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCeEEEEeCCCe------EEEEEeCCCCceeeeeEeec------ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC
Q 001159 419 DGLMLGVAFSKHI------VHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 419 d~~~las~~~dg~------i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
+...+|.=-.+.. .+-|+...+-.......-.. +..+..-+..-.... .++.++ ++.+.+-+...
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~-~~~i~y~~~~~ 185 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGG-ENIIIYKNHLI 185 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEE-SSEEEEEE---
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEEC-CEEEEEecccc
Q ss_pred C---eeeeeecCC----CCCeeEEEe-----eccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCC-CCcEEEEEEcC
Q 001159 487 G---RKQYTFEGH----EAPVYSVCP-----HHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAP-GNWCTMMAYSA 551 (1135)
Q Consensus 487 ~---~~~~~~~~h----~~~v~~i~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~-~~~i~~~~~s~ 551 (1135)
. .....+... ..-+.+... ....++..++.+..+|.+....+.... .....-+. .....++++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~ 265 (504)
T PF10433_consen 186 GSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK 265 (504)
T ss_dssp ---TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES
T ss_pred cccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc
Q ss_pred CC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec----CCCC------EEEEEe---CCCeEEEEEC
Q 001159 552 DG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD----TTRN------RFLAAG---DEFQIKFWDM 617 (1135)
Q Consensus 552 ~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s----~~~~------~l~~~~---~dg~i~iwd~ 617 (1135)
+| .+++.|+. .+|+.+..|....-+.+..+..-. +|..+++. .... .+++++ .+|.+++..-
T Consensus 266 ~g~d~lf~gs~--~gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 266 NGGDYLFVGSE--FGDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp TT--EEEEEES--SS-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCCEEEEEEEe--cCCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCce--EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc---CCCchh----hhhccccccccccCCCCCCCC
Q 001159 618 DNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN---SDGVRL----LRMLEGRAMDKNRCPSEPISS 688 (1135)
Q Consensus 618 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 688 (1135)
.-+-. ......-.+...++.+....+....+..+....-+++.+ +...+. ...+......+........
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~-- 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDG-- 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTT--
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCC--
Q ss_pred CCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCC
Q 001159 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1135)
Q Consensus 689 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 768 (1135)
T Consensus 420 -------------------------------------------------------------------------------- 419 (504)
T PF10433_consen 420 -------------------------------------------------------------------------------- 419 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEE
Q 001159 769 SIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 848 (1135)
Q Consensus 769 ~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~ 848 (1135)
.-+-+++.+=.++..........|... .+..-..|
T Consensus 420 --------~ivQVt~~~i~l~~~~~~~~~~~w~~~-------------------------------------~~~~I~~a 454 (504)
T PF10433_consen 420 --------RIVQVTPKGIRLIDLEDGKLTQEWKPP-------------------------------------AGSIIVAA 454 (504)
T ss_dssp --------EEEEEESSEEEEEESSSTSEEEEEE-T-------------------------------------TS---SEE
T ss_pred --------eEEEEecCeEEEEECCCCeEEEEEeCC-------------------------------------CCCeEEEE
Q ss_pred eecCCCEEEEEeCCeEEEEECCCccEEEEEeCC-----CCCeEEEEEec
Q 001159 849 LSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP-----PPAATFLAFHP 892 (1135)
Q Consensus 849 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~sp 892 (1135)
...++..+++.+++.+.++.+............ ...|.|+...|
T Consensus 455 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 491
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.51 E-value=7.1 Score=39.80 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=51.0
Q ss_pred EecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhcc-------CCCcceEEEEEcCCCCeEEEE
Q 001159 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-------DAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 354 ~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~v~~spd~~~las~ 426 (1135)
+..++.+ |.+-+.+|.+++||+.+++.+... .. ...++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~S-----------i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VS-----------IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-cc-----------HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556764 566788999999999998876531 11 111222 466789999999998877765
Q ss_pred eCCCeEEEEEeCCC
Q 001159 427 FSKHIVHLYTYNPT 440 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~ 440 (1135)
+ +|..+.|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 4 577888887653
No 492
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=82.48 E-value=1.8e+02 Score=38.44 Aligned_cols=135 Identities=8% Similarity=0.053 Sum_probs=75.8
Q ss_pred EEeCCCcEEEEEcccce-------eeEE---------ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceecee
Q 001159 900 IGMEDSSVQIYNVRVDE-------VKTK---------LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 963 (1135)
Q Consensus 900 sg~~dg~v~iwd~~~~~-------~~~~---------l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~ 963 (1135)
.|-.||.|.-||-.+.. -+.. +--..+.|..|.+++...-++-+. +..+.+=-..+ +.....
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r~-~~e~G~ 695 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRRN-KVELGD 695 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-CcccccccccC-CCCCCc
Confidence 35568999999865321 0000 112346677777777655554432 22222111111 000011
Q ss_pred eeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEE
Q 001159 964 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1043 (1135)
Q Consensus 964 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~ 1043 (1135)
.+..+. ...|+.++.-.+.++++....|.+..+...+.. ..+ ...+-.+.|..++......+.| ...+|.++
T Consensus 696 ~l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p-~~l-~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf 767 (1774)
T PF11725_consen 696 ALEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQKPGRP-VPL-SRPGLSGEIKDLALDEKQNLYA-LTSTGELF 767 (1774)
T ss_pred cccCCC-----cCcceeEEEEcCCceEEeccCCccccccCCCCC-ccC-CCCCCCcchhheeeccccceeE-ecCCCcee
Confidence 122222 156889999999888888888999888853332 222 2234478999999998877555 45677665
Q ss_pred E
Q 001159 1044 V 1044 (1135)
Q Consensus 1044 v 1044 (1135)
-
T Consensus 768 ~ 768 (1774)
T PF11725_consen 768 R 768 (1774)
T ss_pred e
Confidence 4
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.01 E-value=1e+02 Score=36.06 Aligned_cols=190 Identities=14% Similarity=0.182 Sum_probs=89.1
Q ss_pred EEEEEE---cCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc-
Q 001159 468 LCIVTC---GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW- 543 (1135)
Q Consensus 468 ~~l~s~---~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~- 543 (1135)
+++++. .......+.| .+|.....+.........+.. ..+|.+++... +.+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~--l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQ--LPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE---TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeE--cCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 3445666667 556655444322111111222 34556665444 778888875 3444444433322
Q ss_pred --EEEEEEcCCCCEEEEEec---------CCCCCCeEEEEECCCCeEEEEeeccc------C------------------
Q 001159 544 --CTMMAYSADGTRLFSCGT---------SKEGESHLVEWNESEGAIKRTYSGFR------K------------------ 588 (1135)
Q Consensus 544 --i~~~~~s~~~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~------~------------------ 588 (1135)
-..+...|+|++|+.+.. ...-...|..+| .+|+.+..+.... .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 345677899999887762 111123466777 7787776643110 0
Q ss_pred --CceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCc-ce--EEE---------------c-CCCCE
Q 001159 589 --RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPAS-PR--LRF---------------N-KEGSL 646 (1135)
Q Consensus 589 --~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~--~~~---------------~-~~~~~ 646 (1135)
-.++++.+.+....|+..+ .-..|...|..+++....+..+.....- .. +.. . .-|+.
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 1367899988545555544 4558889998899988888655322110 11 111 0 12455
Q ss_pred EEEEECCC---cEEEEEcCCC
Q 001159 647 LAVTTSDN---GIKILANSDG 664 (1135)
Q Consensus 647 l~~~~~dg---~i~iwd~~~~ 664 (1135)
-+.-..+| .|.+||-..+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp EEEE-TTS---SEEEEE--TT
T ss_pred ceEEcCCCCeEEEEEEECCCC
Confidence 56666777 8889886554
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=27 Score=44.42 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+...+.+..+......+.... .+.+..|+.........+..... ..+.++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCC
Confidence 344555555555555444432 44566666544444343433222 1178899999999999999999999
Q ss_pred Cce
Q 001159 620 MNM 622 (1135)
Q Consensus 620 ~~~ 622 (1135)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.91 E-value=97 Score=35.04 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred CEEEEEeCCeEEEEECCCccEEEE-EeCCCC---------------------CeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 854 SYVMSASGGKVSLFNMMTFKVMTM-FMSPPP---------------------AATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 854 ~~la~~~dg~i~vwd~~~~~~~~~-~~~h~~---------------------~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
+-++.+.+..+..||-+..-+... +++..+ .|..+..++ .|..+|-.+.+|.+.++=
T Consensus 53 rN~~~~~gD~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 53 RNVVFGLGDELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred cchhcccCCEEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecC-CCceEEEecCCeeEEEEc
Q ss_pred cccceeeEEecCcCCCeEE--------------------EEEcCCC---CeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 912 VRVDEVKTKLKGHQNRITG--------------------LAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~--------------------l~~s~d~---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
....-.-..+......|+| ++|+|+. ..|..-+.|.+|++||+.....+ ......
T Consensus 132 p~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel--ylqpge 209 (741)
T KOG4460|consen 132 PKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL--YLQPGE 209 (741)
T ss_pred hhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh--hccCCC
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE--EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCE----EEEEeCCC--
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLL----VYAGFCDG-- 1040 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~----l~~~~~dg-- 1040 (1135)
.+... ..+.-+.|-....++.. ..-+.|.=|..-++-...+... ....-.-.-++...+ +..-.++|
T Consensus 210 pgRS~--tn~Si~sFGe~~~~~l~~~~a~~~V~~~Esv~Nd~~~l~~S---~ktL~~~nSs~k~E~iE~p~~~L~EnG~~ 284 (741)
T KOG4460|consen 210 PGRSP--TNVSILSFGEEESLVLNKGRAYTAVLGEEAVANDFGPLAAS---PKTLFGQNSSGKDEVVEYPLYILYENGET 284 (741)
T ss_pred cCCCC--ccceeeccCCcceeeeccCcccccccCchhhccCccccccC---ccceeeecccccceeEecceeeeeccCcc
Q ss_pred -eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec-CCCCCEEEEEecCCcEEE
Q 001159 1041 -AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH-PSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1041 -~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~v~~ 1097 (1135)
.|+|--......+..+++..+.....+..-...-|..+. |+-...|+++-..|.++.
T Consensus 285 ~NIyi~~~~~~~~~~~LQGPl~~~p~aeDnyg~~~CaL~~lpS~p~ilViA~S~G~L~h 343 (741)
T KOG4460|consen 285 FNIYISLLHSPGNIGKLQGPLPMHPAAEDNYGYDACALLCLPSVPNILVIATSSGMLYH 343 (741)
T ss_pred eeEEEEEccCcchhhhhcCCccCCcccccccchhhheeEeecCCCCeEEEEecCCceee
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.68 E-value=16 Score=42.46 Aligned_cols=131 Identities=14% Similarity=0.006 Sum_probs=72.2
Q ss_pred EEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe--------------CCCeEEEEE
Q 001159 981 VQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--------------CDGAIGVFD 1046 (1135)
Q Consensus 981 ~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~--------------~dg~I~vwd 1046 (1135)
+.+-++|.+++... ..+..+|..|+.+..+....+...-=..+..-|+|.+|+.+. .| .|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEEC
Confidence 56678888776644 788888887776655443221000012466778999988877 23 367777
Q ss_pred CCCceeeeeeCCceeccc-c----------------ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001159 1047 AETLRFRCRIGPSAYIPT-Y----------------AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~ 1109 (1135)
.+|+.+..+.....+.. . ......+.=++.+.+.++.+|+|+=.-..|...|..+++-.|-+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 88998888775554411 1 11122334478888866667777665668999998899988888
Q ss_pred CCCCC
Q 001159 1110 TPSQD 1114 (1135)
Q Consensus 1110 ~~~~~ 1114 (1135)
.++..
T Consensus 310 g~~~~ 314 (477)
T PF05935_consen 310 GPPGG 314 (477)
T ss_dssp S-STT
T ss_pred CCCCC
Confidence 77653
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.00 E-value=7.6 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=28.0
Q ss_pred cCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
|++++|.++. +++|.++|..+++.+..+.. ...-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 68999999999988888765 233334444
No 498
>PLN02193 nitrile-specifier protein
Probab=80.45 E-value=1.2e+02 Score=35.30 Aligned_cols=237 Identities=5% Similarity=-0.093 Sum_probs=0.0
Q ss_pred CCCeEEEEeCC-------CeEEEEEeCCCCceeeeeEe-ecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcC
Q 001159 419 DGLMLGVAFSK-------HIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVV 485 (1135)
Q Consensus 419 d~~~las~~~d-------g~i~iwd~~~~~~~~~~~~l-~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~ 485 (1135)
++..++.|+.+ ..+.+||+.+.+-......- ........+.+..-++. +++.|+.+ ..+.++|+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~--lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST--LYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE--EEEECCCCCCCCCccEEEEECC
Q ss_pred CCeeeeeecC---CCCCeeEEEeeccCCccEEEEEEcCCe-----EEEEeCcCCCceeEec---CCCCcEEEEEEcCCCC
Q 001159 486 AGRKQYTFEG---HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT 554 (1135)
Q Consensus 486 ~~~~~~~~~~---h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~ 554 (1135)
+.+-...-.. ....-...+..-.+ .+.+.|+.++. +..||+.+.+-...-. .........+..-+++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~--~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk 330 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEE--NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK 330 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECC--EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeec---ccCCceeEEEecCCCCEEEEEeCCC--------------eEEEEEC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDM 617 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~~~~~dg--------------~i~iwd~ 617 (1135)
..+.++.++.....+.+||+.+.+-...-.. ... .....+..-+++.++.|+... .+.++|+
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE-RSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC-cceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEc
Q ss_pred CCCceEEEEeCCCCCCCcc--------eEEEcCCCCEEEEEECCCcEEEEE
Q 001159 618 DNMNMLTTVDADGGLPASP--------RLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~--------~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
.+.+-...-.......... ......+..+++.|+.+..=..+|
T Consensus 410 ~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~ 460 (470)
T PLN02193 410 ETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFD 460 (470)
T ss_pred CcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcccccc
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.39 E-value=16 Score=41.98 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.3
Q ss_pred CEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
.|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999889999999999999999974
No 500
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.20 E-value=1.2e+02 Score=34.85 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCC
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~ 420 (1135)
...+.|+|.|||+ +|++--..|.|++++..++...... .++........+....|+++|+-
T Consensus 30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~------------~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVF------------TLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeee------------cCCceeccCCCCceeeEEECCCc
Confidence 4789999999997 7776544699999986554321100 00100011135678999999874
Done!