Query 001159
Match_columns 1135
No_of_seqs 856 out of 5118
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 14:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 6.6E-68 2.3E-72 644.1 78.6 565 341-1099 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 6.7E-66 2.3E-70 626.3 71.6 573 345-1101 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 1.5E-64 5E-69 614.5 73.8 567 312-1048 18-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 1E-63 3.5E-68 607.2 76.2 555 310-1046 14-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-63 5.1E-68 661.9 64.3 613 344-1101 613-1248(1249)
6 1pgu_A Actin interacting prote 100.0 3.7E-59 1.3E-63 572.5 68.5 556 345-1049 17-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 9E-59 3.1E-63 616.0 61.3 572 310-1048 613-1248(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 3.2E-57 1.1E-61 568.6 69.4 603 340-1059 11-793 (902)
9 1pgu_A Actin interacting prote 100.0 4.7E-56 1.6E-60 544.9 60.6 557 405-1102 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 7.8E-55 2.7E-59 546.9 58.3 588 405-1107 14-788 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 6.5E-48 2.2E-52 489.0 60.6 481 339-1003 5-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3E-45 1E-49 464.6 50.9 464 404-1046 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 2.4E-44 8.1E-49 413.9 40.8 283 345-661 107-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 3.3E-39 1.1E-43 361.4 45.4 293 337-660 45-340 (340)
15 2pbi_B Guanine nucleotide-bind 100.0 3.3E-39 1.1E-43 363.0 43.3 295 338-660 55-354 (354)
16 3ow8_A WD repeat-containing pr 100.0 1.7E-39 5.9E-44 359.4 40.3 293 337-661 22-319 (321)
17 2ynn_A Coatomer subunit beta'; 100.0 9.3E-39 3.2E-43 351.4 42.8 292 338-663 4-302 (304)
18 3ow8_A WD repeat-containing pr 100.0 1.1E-38 3.7E-43 353.1 42.1 294 487-955 22-320 (321)
19 3frx_A Guanine nucleotide-bind 100.0 2.1E-38 7.1E-43 351.2 40.9 301 337-664 7-318 (319)
20 1vyh_C Platelet-activating fac 100.0 1E-38 3.6E-43 366.9 39.8 247 404-664 104-370 (410)
21 3iz6_a 40S ribosomal protein R 100.0 3E-39 1E-43 367.7 34.9 306 333-664 52-376 (380)
22 1got_B GT-beta; complex (GTP-b 100.0 8.3E-38 2.8E-42 350.0 41.9 248 404-664 51-302 (340)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.6E-38 2.6E-42 350.9 41.3 303 337-665 5-337 (345)
24 4g56_B MGC81050 protein; prote 100.0 2.2E-38 7.6E-43 356.4 36.9 293 344-664 40-344 (357)
25 4gqb_B Methylosome protein 50; 100.0 2.5E-37 8.6E-42 344.4 41.8 297 345-664 29-332 (344)
26 4ery_A WD repeat-containing pr 100.0 1.6E-36 5.3E-41 335.9 44.9 292 338-662 14-311 (312)
27 2ynn_A Coatomer subunit beta'; 100.0 4.4E-37 1.5E-41 338.1 39.4 248 404-664 9-260 (304)
28 1r5m_A SIR4-interacting protei 100.0 3.3E-37 1.1E-41 358.3 40.1 304 340-664 39-362 (425)
29 1r5m_A SIR4-interacting protei 100.0 7.9E-37 2.7E-41 355.2 42.7 341 431-955 26-424 (425)
30 4g56_B MGC81050 protein; prote 100.0 1.2E-37 4.2E-42 350.3 33.8 320 735-1104 16-345 (357)
31 1erj_A Transcriptional repress 100.0 1.1E-36 3.7E-41 348.3 42.1 310 337-663 55-389 (393)
32 2pbi_B Guanine nucleotide-bind 100.0 9.2E-37 3.2E-41 343.0 40.7 249 404-664 60-316 (354)
33 2hes_X YDR267CP; beta-propelle 100.0 1.7E-36 5.7E-41 337.6 40.5 297 337-663 4-328 (330)
34 3frx_A Guanine nucleotide-bind 100.0 3.2E-36 1.1E-40 333.6 41.7 247 404-664 13-268 (319)
35 3iz6_a 40S ribosomal protein R 100.0 1.7E-37 5.8E-42 353.2 32.2 250 404-664 62-330 (380)
36 2xzm_R RACK1; ribosome, transl 100.0 2.7E-36 9.2E-41 338.4 40.4 300 338-664 12-341 (343)
37 2pm9_A Protein WEB1, protein t 100.0 1.4E-37 4.8E-42 360.4 30.3 292 346-664 12-338 (416)
38 4gqb_B Methylosome protein 50; 100.0 1E-36 3.5E-41 339.5 35.0 294 771-1104 29-333 (344)
39 1k32_A Tricorn protease; prote 100.0 2.7E-35 9.1E-40 380.2 53.5 520 345-1051 13-639 (1045)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.6E-36 1.9E-40 335.7 40.5 316 444-921 6-342 (345)
41 4aow_A Guanine nucleotide-bind 100.0 1.7E-35 5.8E-40 332.4 43.7 305 335-665 26-339 (340)
42 2pm9_A Protein WEB1, protein t 100.0 1.7E-37 5.9E-42 359.6 27.5 338 407-957 11-415 (416)
43 1gxr_A ESG1, transducin-like e 100.0 4E-35 1.4E-39 328.9 45.7 319 312-661 9-335 (337)
44 4ery_A WD repeat-containing pr 100.0 1.7E-35 5.9E-40 327.5 41.6 250 404-664 19-269 (312)
45 1gxr_A ESG1, transducin-like e 100.0 5.9E-36 2E-40 335.7 37.8 286 345-664 8-297 (337)
46 2j04_B YDR362CP, TAU91; beta p 100.0 9.9E-37 3.4E-41 356.5 29.9 275 336-663 123-428 (524)
47 2xzm_R RACK1; ribosome, transl 100.0 6.9E-35 2.4E-39 326.9 42.0 205 446-663 14-244 (343)
48 3vl1_A 26S proteasome regulato 100.0 1.3E-35 4.6E-40 344.1 37.1 345 409-956 57-419 (420)
49 1k32_A Tricorn protease; prote 100.0 9.7E-34 3.3E-38 365.6 57.4 530 407-1104 13-639 (1045)
50 3gre_A Serine/threonine-protei 100.0 2E-36 6.9E-41 352.9 28.6 357 405-953 60-437 (437)
51 3vl1_A 26S proteasome regulato 100.0 6.7E-36 2.3E-40 346.7 32.6 283 348-664 58-366 (420)
52 2hes_X YDR267CP; beta-propelle 100.0 1.1E-34 3.9E-39 322.8 41.2 304 576-1049 3-328 (330)
53 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-36 3.9E-41 355.9 24.3 344 407-956 132-517 (524)
54 1erj_A Transcriptional repress 100.0 2.2E-34 7.7E-39 329.1 41.5 290 495-956 62-389 (393)
55 3dm0_A Maltose-binding peripla 100.0 1.2E-34 4E-39 358.2 41.9 298 339-662 374-692 (694)
56 3ei3_B DNA damage-binding prot 100.0 1.4E-34 4.6E-39 330.8 38.1 297 336-663 62-382 (383)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.8E-34 3.4E-38 330.6 44.2 317 448-957 113-443 (445)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-33 5.3E-38 329.0 45.3 319 404-914 114-442 (445)
59 1sq9_A Antiviral protein SKI8; 100.0 3.4E-34 1.2E-38 329.5 38.2 297 339-664 8-396 (397)
60 4aow_A Guanine nucleotide-bind 100.0 2.3E-33 8E-38 315.0 43.6 305 432-916 18-339 (340)
61 3zwl_B Eukaryotic translation 100.0 2.8E-33 9.5E-38 318.3 44.0 289 340-664 26-347 (369)
62 3v7d_B Cell division control p 100.0 2.9E-33 1E-37 328.9 44.9 320 404-912 117-461 (464)
63 3odt_A Protein DOA1; ubiquitin 100.0 2E-33 6.8E-38 311.4 40.2 289 336-664 7-297 (313)
64 1k8k_C P40, ARP2/3 complex 41 100.0 7.6E-34 2.6E-38 323.5 34.7 293 345-669 7-367 (372)
65 3k26_A Polycomb protein EED; W 100.0 5.6E-34 1.9E-38 323.7 33.1 291 345-663 17-366 (366)
66 3v7d_B Cell division control p 100.0 1E-32 3.5E-37 324.3 44.9 345 578-1046 112-460 (464)
67 3gre_A Serine/threonine-protei 100.0 6E-34 2.1E-38 331.9 33.7 314 320-660 35-437 (437)
68 4e54_B DNA damage-binding prot 100.0 3.8E-34 1.3E-38 332.4 31.0 292 345-664 118-431 (435)
69 3i2n_A WD repeat-containing pr 100.0 9.8E-34 3.3E-38 320.5 33.5 289 345-664 17-354 (357)
70 3ei3_B DNA damage-binding prot 100.0 7.6E-33 2.6E-37 316.3 40.4 315 571-1102 57-382 (383)
71 4h5i_A Guanine nucleotide-exch 100.0 1.9E-33 6.4E-38 317.0 32.5 301 345-664 13-344 (365)
72 1sq9_A Antiviral protein SKI8; 100.0 6.9E-33 2.4E-37 318.6 35.4 298 489-957 8-396 (397)
73 3k26_A Polycomb protein EED; W 100.0 4.1E-33 1.4E-37 316.5 32.8 317 493-956 14-366 (366)
74 3zwl_B Eukaryotic translation 100.0 4.5E-32 1.6E-36 308.3 41.1 302 403-805 27-347 (369)
75 3dwl_C Actin-related protein 2 100.0 2.3E-34 8E-39 328.2 22.1 286 345-661 10-377 (377)
76 2pm7_B Protein transport prote 100.0 1.3E-32 4.4E-37 301.2 35.0 251 404-662 5-284 (297)
77 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-33 5.1E-38 317.6 27.6 260 346-662 15-296 (588)
78 4aez_A CDC20, WD repeat-contai 100.0 2.2E-32 7.5E-37 314.1 37.9 290 345-667 90-384 (401)
79 3dm0_A Maltose-binding peripla 100.0 4.2E-32 1.4E-36 335.4 42.8 208 447-664 376-593 (694)
80 4e54_B DNA damage-binding prot 100.0 6.2E-33 2.1E-37 322.1 31.7 302 580-1053 112-434 (435)
81 4gga_A P55CDC, cell division c 100.0 9.1E-32 3.1E-36 310.9 40.5 282 348-664 107-396 (420)
82 4a11_B DNA excision repair pro 100.0 6.8E-32 2.3E-36 311.6 38.7 307 338-664 34-366 (408)
83 4h5i_A Guanine nucleotide-exch 100.0 5.9E-32 2E-36 304.8 36.2 293 453-957 14-344 (365)
84 2pm7_B Protein transport prote 100.0 5.7E-32 1.9E-36 296.1 34.5 247 345-619 8-285 (297)
85 4a11_B DNA excision repair pro 100.0 6.7E-32 2.3E-36 311.7 36.8 364 476-956 22-405 (408)
86 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.7E-38 317.8 21.2 320 452-994 14-349 (588)
87 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-31 4.5E-36 304.9 37.7 247 404-663 4-274 (372)
88 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-31 1.4E-35 292.6 40.6 288 487-960 8-300 (313)
89 3i2n_A WD repeat-containing pr 100.0 6.8E-32 2.3E-36 305.3 32.8 298 536-958 13-355 (357)
90 3dw8_B Serine/threonine-protei 100.0 9.6E-32 3.3E-36 314.6 34.5 300 343-661 25-444 (447)
91 4ggc_A P55CDC, cell division c 100.0 1.4E-30 4.8E-35 289.1 40.8 282 349-664 28-316 (318)
92 3dwl_C Actin-related protein 2 100.0 1.1E-32 3.8E-37 314.4 23.6 243 406-662 9-280 (377)
93 3bg1_A Protein SEC13 homolog; 100.0 4.4E-32 1.5E-36 299.8 26.1 250 403-662 8-292 (316)
94 1p22_A F-BOX/WD-repeat protein 100.0 5.5E-31 1.9E-35 306.0 36.7 273 345-665 132-416 (435)
95 1yfq_A Cell cycle arrest prote 100.0 5.1E-31 1.8E-35 296.1 33.8 279 345-660 10-321 (342)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-31 9.5E-36 305.3 31.0 297 347-664 35-343 (402)
97 4aez_A CDC20, WD repeat-contai 100.0 2.5E-30 8.5E-35 296.9 38.2 281 777-1108 97-386 (401)
98 3bg1_A Protein SEC13 homolog; 100.0 1.7E-31 5.8E-36 295.1 26.2 249 345-619 12-293 (316)
99 3mmy_A MRNA export factor; mRN 100.0 1.6E-30 5.5E-35 295.4 33.3 294 333-662 25-345 (368)
100 3dw8_B Serine/threonine-protei 100.0 2.8E-30 9.6E-35 302.1 35.5 250 406-665 26-375 (447)
101 4gga_A P55CDC, cell division c 100.0 1.1E-29 3.7E-34 293.5 39.9 280 777-1104 109-397 (420)
102 4ggc_A P55CDC, cell division c 100.0 1.7E-29 5.9E-34 280.3 37.7 282 544-957 28-316 (318)
103 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-30 1.7E-34 288.8 33.6 253 403-664 6-338 (351)
104 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-29 5.2E-34 293.9 35.5 233 406-664 131-366 (435)
105 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5.2E-34 284.9 33.6 260 345-627 10-345 (351)
106 3jrp_A Fusion protein of prote 100.0 1.2E-29 4.1E-34 289.5 32.6 258 339-624 3-292 (379)
107 3jrp_A Fusion protein of prote 100.0 1.3E-29 4.4E-34 289.2 32.7 253 404-664 7-288 (379)
108 1yfq_A Cell cycle arrest prote 100.0 2.8E-29 9.6E-34 281.9 33.3 248 404-664 7-283 (342)
109 2w18_A PALB2, fancn, partner a 100.0 1.9E-28 6.6E-33 258.8 35.6 293 456-954 42-355 (356)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-28 4E-33 287.7 37.2 299 347-663 5-391 (450)
111 3mmy_A MRNA export factor; mRN 100.0 6.5E-29 2.2E-33 282.0 34.3 296 526-956 24-346 (368)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 1.9E-29 6.7E-34 289.8 29.6 247 410-664 36-300 (402)
113 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-28 4.8E-33 276.4 31.2 283 338-664 10-337 (355)
114 1l0q_A Surface layer protein; 100.0 9.8E-27 3.3E-31 266.5 46.4 328 469-992 4-364 (391)
115 3bws_A Protein LP49; two-domai 100.0 1.7E-27 5.7E-32 277.1 39.8 305 327-662 101-431 (433)
116 2xyi_A Probable histone-bindin 100.0 2.4E-28 8.1E-33 282.9 31.8 266 339-620 121-411 (430)
117 2xyi_A Probable histone-bindin 100.0 5.6E-28 1.9E-32 279.7 34.9 316 338-664 37-411 (430)
118 3bws_A Protein LP49; two-domai 100.0 2.4E-27 8.1E-32 275.8 40.4 337 409-914 61-432 (433)
119 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-27 4.5E-32 268.4 36.2 329 525-1051 3-338 (355)
120 1l0q_A Surface layer protein; 100.0 2.9E-27 9.8E-32 271.0 39.8 278 360-675 3-286 (391)
121 3jro_A Fusion protein of prote 100.0 1.2E-28 4E-33 305.7 27.9 252 342-621 4-287 (753)
122 3jro_A Fusion protein of prote 100.0 3.5E-28 1.2E-32 301.5 28.7 254 403-664 4-286 (753)
123 3lrv_A PRE-mRNA-splicing facto 100.0 9E-28 3.1E-32 269.1 27.7 195 841-1049 125-333 (343)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8E-27 2.7E-31 272.1 36.2 285 542-956 5-391 (450)
125 4gq1_A NUP37; propeller, trans 100.0 9.8E-28 3.3E-32 273.7 27.7 304 346-661 15-387 (393)
126 3lrv_A PRE-mRNA-splicing facto 100.0 9.9E-28 3.4E-32 268.7 25.3 267 353-662 43-332 (343)
127 2w18_A PALB2, fancn, partner a 100.0 2.4E-26 8.2E-31 242.9 31.8 285 349-661 42-355 (356)
128 1nir_A Nitrite reductase; hemo 100.0 4.7E-26 1.6E-30 268.9 34.4 341 549-1013 145-523 (543)
129 1nir_A Nitrite reductase; hemo 99.9 2.2E-25 7.6E-30 263.1 38.6 324 461-961 145-519 (543)
130 4gq1_A NUP37; propeller, trans 99.9 1.2E-26 4E-31 264.8 22.6 247 346-618 89-388 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.4E-24 1.9E-28 243.9 30.4 306 453-938 62-410 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.5E-23 5.2E-28 261.8 35.3 303 346-663 36-413 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.9E-24 1E-28 246.1 25.9 296 347-678 63-400 (415)
134 2ecf_A Dipeptidyl peptidase IV 99.9 4E-23 1.4E-27 257.9 32.2 328 453-957 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-23 8.2E-28 259.3 25.5 288 348-664 18-394 (723)
136 3u4y_A Uncharacterized protein 99.9 1.6E-21 5.6E-26 217.2 36.7 281 352-664 3-305 (331)
137 2z3z_A Dipeptidyl aminopeptida 99.9 2.6E-21 8.8E-26 240.0 35.3 237 411-662 28-341 (706)
138 3vgz_A Uncharacterized protein 99.9 8.8E-21 3E-25 213.5 36.5 279 342-654 36-335 (353)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-21 6.3E-26 242.2 32.8 241 409-660 17-341 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-21 4.9E-26 242.3 31.4 322 456-958 28-437 (706)
141 1ri6_A Putative isomerase YBHE 99.9 8.3E-21 2.8E-25 212.7 30.7 241 841-1101 37-307 (343)
142 3u4y_A Uncharacterized protein 99.9 1.3E-20 4.6E-25 209.8 31.6 284 780-1104 4-306 (331)
143 1ri6_A Putative isomerase YBHE 99.9 4.9E-20 1.7E-24 206.4 34.9 275 358-662 4-307 (343)
144 1pby_B Quinohemoprotein amine 99.9 2.3E-20 7.8E-25 208.5 31.3 301 512-925 2-321 (337)
145 2ojh_A Uncharacterized protein 99.9 7.1E-21 2.4E-25 208.2 25.5 257 364-654 17-293 (297)
146 3vgz_A Uncharacterized protein 99.9 1.5E-19 5.1E-24 203.4 35.6 271 773-1093 41-335 (353)
147 3hfq_A Uncharacterized protein 99.9 1.6E-19 5.5E-24 202.5 31.4 247 841-1104 39-321 (347)
148 1pby_B Quinohemoprotein amine 99.9 8.5E-20 2.9E-24 203.9 28.1 274 361-671 3-317 (337)
149 3o4h_A Acylamino-acid-releasin 99.9 4.4E-20 1.5E-24 222.9 27.6 272 347-662 22-314 (582)
150 1z68_A Fibroblast activation p 99.9 2.5E-20 8.7E-25 231.5 25.6 377 546-1057 20-451 (719)
151 2ojh_A Uncharacterized protein 99.9 7.6E-20 2.6E-24 199.9 26.5 255 326-610 21-293 (297)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-18 4E-23 199.9 35.0 311 777-1102 40-405 (434)
153 3hfq_A Uncharacterized protein 99.8 1.6E-18 5.6E-23 194.3 31.9 274 324-623 15-323 (347)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-18 3.8E-23 200.2 29.9 220 347-577 37-279 (434)
155 1z68_A Fibroblast activation p 99.8 1E-19 3.5E-24 226.1 22.5 317 317-664 20-444 (719)
156 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-18 7.4E-23 193.5 28.9 293 510-924 10-335 (349)
157 4a5s_A Dipeptidyl peptidase 4 99.8 6.5E-18 2.2E-22 209.4 35.9 380 544-1057 19-457 (740)
158 3pe7_A Oligogalacturonate lyas 99.8 4.9E-18 1.7E-22 193.7 31.4 299 336-662 19-381 (388)
159 3o4h_A Acylamino-acid-releasin 99.8 4.4E-19 1.5E-23 214.1 23.9 237 407-661 20-274 (582)
160 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-18 6E-23 194.2 26.6 241 846-1109 4-332 (349)
161 3scy_A Hypothetical bacterial 99.8 3.1E-17 1.1E-21 184.9 36.3 302 551-958 11-341 (361)
162 4a5s_A Dipeptidyl peptidase 4 99.8 5.7E-18 2E-22 209.9 31.2 274 348-664 18-354 (740)
163 3scy_A Hypothetical bacterial 99.8 1E-16 3.6E-21 180.5 36.9 245 407-662 48-336 (361)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-17 5E-22 187.5 27.3 251 841-1103 39-342 (365)
165 2oiz_A Aromatic amine dehydrog 99.8 1.6E-16 5.5E-21 177.7 34.3 312 510-938 14-360 (361)
166 3pe7_A Oligogalacturonate lyas 99.8 1.3E-17 4.5E-22 190.2 24.8 254 404-664 26-330 (388)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-16 5.2E-21 179.1 30.0 247 408-664 39-342 (365)
168 3c5m_A Oligogalacturonate lyas 99.7 1.2E-16 4E-21 182.9 26.5 282 349-661 38-380 (396)
169 2oiz_A Aromatic amine dehydrog 99.7 1.8E-15 6.3E-20 169.0 33.1 301 551-988 13-360 (361)
170 3c5m_A Oligogalacturonate lyas 99.7 6.5E-17 2.2E-21 185.0 19.6 317 526-1003 15-380 (396)
171 1qks_A Cytochrome CD1 nitrite 99.7 3.4E-14 1.2E-18 166.6 38.5 333 598-1058 165-547 (567)
172 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-14 5.1E-19 156.7 31.3 242 841-1103 29-281 (286)
173 2gop_A Trilobed protease; beta 99.7 9.6E-15 3.3E-19 163.4 29.0 263 347-662 15-330 (347)
174 3fvz_A Peptidyl-glycine alpha- 99.7 1.2E-14 4E-19 160.8 28.7 251 841-1102 23-322 (329)
175 4a2l_A BT_4663, two-component 99.7 1.3E-10 4.6E-15 145.0 68.8 583 346-1102 42-659 (795)
176 3azo_A Aminopeptidase; POP fam 99.7 7E-15 2.4E-19 180.6 29.3 251 402-661 17-321 (662)
177 1qks_A Cytochrome CD1 nitrite 99.7 2.4E-13 8.3E-18 159.3 40.8 188 469-664 169-374 (567)
178 4a2l_A BT_4663, two-component 99.7 1.4E-10 4.7E-15 144.8 67.8 535 346-1048 87-658 (795)
179 3azo_A Aminopeptidase; POP fam 99.7 7.2E-15 2.5E-19 180.4 27.3 285 345-664 22-370 (662)
180 3fvz_A Peptidyl-glycine alpha- 99.7 2.7E-14 9.2E-19 157.9 28.5 245 347-619 24-322 (329)
181 1q7f_A NHL, brain tumor CG1071 99.6 1.5E-13 5.2E-18 148.8 32.2 245 406-664 27-281 (286)
182 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.8E-18 169.7 34.0 249 405-664 121-415 (710)
183 3v9f_A Two-component system se 99.6 1.9E-09 6.6E-14 134.2 71.3 595 346-1102 18-656 (781)
184 2dg1_A DRP35, lactonase; beta 99.6 2.2E-13 7.4E-18 151.3 30.3 273 347-654 6-301 (333)
185 2dg1_A DRP35, lactonase; beta 99.6 3.5E-13 1.2E-17 149.6 30.7 270 777-1092 9-300 (333)
186 2gop_A Trilobed protease; beta 99.6 2.5E-13 8.4E-18 151.9 28.6 220 843-1101 60-330 (347)
187 2xdw_A Prolyl endopeptidase; a 99.6 2.6E-13 8.9E-18 167.3 29.8 247 347-621 125-416 (710)
188 2bkl_A Prolyl endopeptidase; m 99.6 9.8E-14 3.4E-18 170.5 25.7 248 405-664 117-398 (695)
189 3no2_A Uncharacterized protein 99.6 2.9E-13 1E-17 144.3 25.3 252 852-1120 4-270 (276)
190 3dsm_A Uncharacterized protein 99.6 6.7E-13 2.3E-17 146.3 28.2 241 841-1107 43-306 (328)
191 3e5z_A Putative gluconolactona 99.6 5.3E-13 1.8E-17 145.2 26.9 240 345-621 26-288 (296)
192 3dsm_A Uncharacterized protein 99.6 1E-12 3.5E-17 144.8 29.2 276 367-671 15-308 (328)
193 2z2n_A Virginiamycin B lyase; 99.6 1.6E-11 5.5E-16 133.7 38.5 281 345-664 13-296 (299)
194 3e5z_A Putative gluconolactona 99.6 1E-12 3.5E-17 143.0 28.2 237 405-664 24-287 (296)
195 3v9f_A Two-component system se 99.6 3.7E-09 1.3E-13 131.6 63.5 537 347-1049 66-656 (781)
196 1rwi_B Serine/threonine-protei 99.5 1.5E-12 5.1E-17 139.6 27.6 239 843-1105 25-267 (270)
197 3no2_A Uncharacterized protein 99.5 1.8E-12 6.2E-17 138.1 27.4 243 361-639 7-272 (276)
198 2z2n_A Virginiamycin B lyase; 99.5 4.6E-11 1.6E-15 130.0 38.7 278 773-1104 15-297 (299)
199 2bkl_A Prolyl endopeptidase; m 99.5 4.8E-13 1.7E-17 164.3 24.6 248 345-622 119-400 (695)
200 2mad_H Methylamine dehydrogena 99.5 3.1E-11 1.1E-15 134.6 36.8 274 353-664 27-351 (373)
201 1yr2_A Prolyl oligopeptidase; 99.5 1.3E-12 4.4E-17 161.7 26.8 247 406-664 160-442 (741)
202 1rwi_B Serine/threonine-protei 99.5 3.8E-12 1.3E-16 136.4 26.9 240 348-621 25-266 (270)
203 3sjl_D Methylamine dehydrogena 99.5 2.3E-12 8E-17 140.6 25.3 281 780-1108 39-369 (386)
204 2mad_H Methylamine dehydrogena 99.5 2.3E-11 7.9E-16 135.6 33.8 239 846-1106 70-354 (373)
205 3sjl_D Methylamine dehydrogena 99.5 1.4E-11 4.8E-16 134.5 30.5 312 507-936 40-384 (386)
206 2qc5_A Streptogramin B lactona 99.5 1.8E-10 6.1E-15 125.4 38.6 278 345-661 18-298 (300)
207 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.5E-16 152.6 26.7 245 347-621 163-443 (741)
208 2qc5_A Streptogramin B lactona 99.4 6.4E-10 2.2E-14 121.0 36.9 276 773-1101 20-299 (300)
209 3c75_H MADH, methylamine dehyd 99.4 3.2E-11 1.1E-15 134.4 23.8 278 356-670 82-408 (426)
210 3c75_H MADH, methylamine dehyd 99.4 6.2E-11 2.1E-15 132.1 25.5 258 823-1106 105-406 (426)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.8E-10 6.2E-15 126.4 28.7 243 408-663 17-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2E-10 6.7E-15 126.1 27.5 244 347-619 18-299 (314)
213 3hrp_A Uncharacterized protein 99.3 4.5E-10 1.5E-14 127.1 29.5 252 841-1100 130-408 (409)
214 4a0p_A LRP6, LRP-6, low-densit 99.3 3.4E-06 1.1E-10 100.1 63.6 531 422-1057 8-557 (628)
215 3hrp_A Uncharacterized protein 99.3 5.6E-10 1.9E-14 126.3 29.6 240 347-617 131-408 (409)
216 3iuj_A Prolyl endopeptidase; h 99.3 2.7E-10 9.1E-15 139.4 28.4 249 346-623 128-409 (693)
217 3g4e_A Regucalcin; six bladed 99.3 6E-10 2.1E-14 120.7 26.5 228 348-608 14-261 (297)
218 2qe8_A Uncharacterized protein 99.3 2.7E-10 9.3E-15 126.3 23.3 271 347-654 17-312 (343)
219 3g4e_A Regucalcin; six bladed 99.3 3.6E-09 1.2E-13 114.6 30.3 230 407-653 11-262 (297)
220 1xip_A Nucleoporin NUP159; bet 99.2 1.4E-10 4.8E-15 127.4 18.2 174 841-1035 37-230 (388)
221 1xip_A Nucleoporin NUP159; bet 99.2 2.1E-10 7.1E-15 126.0 18.7 183 348-560 39-232 (388)
222 3s94_A LRP-6, low-density lipo 99.2 3.4E-06 1.2E-10 100.0 56.2 522 428-1051 16-553 (619)
223 3iuj_A Prolyl endopeptidase; h 99.2 5.6E-10 1.9E-14 136.5 24.2 244 406-664 126-406 (693)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 3.3E-09 1.1E-13 116.4 28.1 224 348-608 50-291 (326)
225 2qe8_A Uncharacterized protein 99.2 1.2E-09 3.9E-14 121.2 24.5 269 542-952 17-317 (343)
226 2ghs_A AGR_C_1268P; regucalcin 99.2 4.1E-09 1.4E-13 115.7 28.7 224 777-1039 52-292 (326)
227 3dr2_A Exported gluconolactona 99.2 1.8E-09 6.2E-14 117.5 25.6 230 345-611 43-299 (305)
228 1yiq_A Quinohemoprotein alcoho 99.2 2.5E-09 8.4E-14 129.5 28.4 138 512-655 71-257 (689)
229 1kb0_A Quinohemoprotein alcoho 99.2 3.2E-09 1.1E-13 128.2 29.0 191 469-665 79-348 (677)
230 1mda_H Methylamine dehydrogena 99.2 1.6E-09 5.4E-14 118.9 21.3 278 328-642 47-366 (368)
231 1fwx_A Nitrous oxide reductase 99.1 4E-09 1.4E-13 119.7 24.6 273 551-958 99-433 (595)
232 3dr2_A Exported gluconolactona 99.1 1.2E-08 4.3E-13 110.8 26.9 233 406-657 42-301 (305)
233 1yiq_A Quinohemoprotein alcoho 99.1 1E-08 3.6E-13 124.0 28.5 201 420-628 70-347 (689)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1E-07 3.5E-12 107.2 34.6 148 469-628 55-216 (376)
235 1mda_H Methylamine dehydrogena 99.1 2.5E-09 8.6E-14 117.3 20.2 222 863-1105 47-349 (368)
236 1kb0_A Quinohemoprotein alcoho 99.1 2.8E-08 9.5E-13 120.0 29.4 279 362-665 80-509 (677)
237 2ece_A 462AA long hypothetical 99.0 2.7E-08 9.2E-13 108.9 24.8 238 783-1037 93-399 (462)
238 3hxj_A Pyrrolo-quinoline quino 99.0 2.5E-09 8.4E-14 118.2 16.9 295 512-957 31-325 (330)
239 3s94_A LRP-6, low-density lipo 99.0 3.8E-05 1.3E-09 91.0 52.9 207 345-580 38-247 (619)
240 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2E-07 6.9E-12 104.8 32.1 256 362-660 106-375 (376)
241 2hz6_A Endoplasmic reticulum t 99.0 4.2E-10 1.5E-14 125.7 8.8 190 419-628 8-201 (369)
242 3ei3_A DNA damage-binding prot 99.0 0.00045 1.6E-08 87.5 63.1 576 350-1049 330-999 (1158)
243 1fwx_A Nitrous oxide reductase 99.0 6.5E-08 2.2E-12 109.9 24.2 234 851-1104 99-433 (595)
244 2ece_A 462AA long hypothetical 98.9 1.6E-07 5.5E-12 102.8 25.9 239 353-607 88-399 (462)
245 3hxj_A Pyrrolo-quinoline quino 98.9 4.7E-08 1.6E-12 107.8 22.3 265 347-663 60-324 (330)
246 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00038 1.3E-08 82.5 63.4 490 360-958 8-510 (628)
247 1npe_A Nidogen, entactin; glyc 98.9 7.4E-06 2.5E-10 86.7 35.5 223 409-645 36-263 (267)
248 1kv9_A Type II quinohemoprotei 98.9 6.1E-07 2.1E-11 108.2 29.7 191 469-665 68-335 (668)
249 2hz6_A Endoplasmic reticulum t 98.9 8.6E-10 3E-14 123.2 3.9 188 894-1110 8-200 (369)
250 1kv9_A Type II quinohemoprotei 98.8 1.5E-06 5.2E-11 104.7 30.8 111 512-628 67-196 (668)
251 1npe_A Nidogen, entactin; glyc 98.8 4.8E-06 1.6E-10 88.2 29.4 205 842-1058 36-247 (267)
252 2iwa_A Glutamine cyclotransfer 98.7 1.3E-06 4.5E-11 90.0 23.4 212 842-1104 21-239 (266)
253 3ott_A Two-component system se 98.7 0.002 6.8E-08 79.5 70.9 572 346-1102 21-626 (758)
254 2ad6_A Methanol dehydrogenase 98.7 4.7E-06 1.6E-10 98.2 28.9 110 512-629 63-195 (571)
255 3nol_A Glutamine cyclotransfer 98.7 2.7E-06 9.2E-11 86.3 22.3 203 841-1097 42-251 (262)
256 1w6s_A Methanol dehydrogenase 98.7 1.1E-05 3.6E-10 94.9 30.6 112 512-629 63-201 (599)
257 3ei3_A DNA damage-binding prot 98.6 0.0041 1.4E-07 78.8 61.2 605 338-1047 366-1060(1158)
258 2ad6_A Methanol dehydrogenase 98.6 2.7E-05 9.1E-10 91.8 33.1 374 469-942 64-523 (571)
259 3nok_A Glutaminyl cyclase; bet 98.6 3.3E-06 1.1E-10 85.5 21.3 200 841-1095 54-259 (268)
260 1flg_A Protein (quinoprotein e 98.6 2.6E-05 8.8E-10 92.0 32.1 192 470-665 71-357 (582)
261 2iwa_A Glutamine cyclotransfer 98.6 7.8E-06 2.7E-10 84.2 24.2 197 455-664 22-238 (266)
262 1w6s_A Methanol dehydrogenase 98.6 3E-05 1E-09 91.1 32.2 166 887-1058 245-512 (599)
263 2xe4_A Oligopeptidase B; hydro 98.6 6.3E-06 2.1E-10 101.2 27.3 248 348-622 175-461 (751)
264 3ott_A Two-component system se 98.6 0.0048 1.6E-07 76.0 61.3 529 346-1048 62-625 (758)
265 3nol_A Glutamine cyclotransfer 98.6 4.9E-06 1.7E-10 84.4 21.0 194 777-1003 46-252 (262)
266 2fp8_A Strictosidine synthase; 98.6 1.1E-05 3.7E-10 88.2 25.8 237 843-1104 20-315 (322)
267 2fp8_A Strictosidine synthase; 98.6 1.3E-05 4.5E-10 87.5 26.2 250 777-1049 22-313 (322)
268 1flg_A Protein (quinoprotein e 98.5 0.00019 6.6E-09 84.5 36.9 204 420-629 68-365 (582)
269 3mbr_X Glutamine cyclotransfer 98.5 2.2E-05 7.5E-10 79.0 23.9 207 841-1100 20-233 (243)
270 2p4o_A Hypothetical protein; p 98.5 9.9E-05 3.4E-09 79.7 30.5 242 333-610 18-279 (306)
271 3nok_A Glutaminyl cyclase; bet 98.5 9.2E-06 3.2E-10 82.3 19.9 193 777-1003 58-262 (268)
272 1k3i_A Galactose oxidase precu 98.5 2.3E-05 7.7E-10 94.9 27.3 279 350-652 189-530 (656)
273 2p4o_A Hypothetical protein; p 98.5 0.00011 3.8E-09 79.3 29.8 228 409-653 32-278 (306)
274 3mbr_X Glutamine cyclotransfer 98.4 5.5E-05 1.9E-09 76.1 23.7 194 777-1003 24-231 (243)
275 3v64_C Agrin; beta propeller, 98.4 0.00029 9.8E-09 77.4 30.8 238 843-1104 35-277 (349)
276 1ijq_A LDL receptor, low-densi 98.4 0.00029 9.8E-09 76.2 29.9 208 841-1057 29-246 (316)
277 3v64_C Agrin; beta propeller, 98.3 0.00089 3.1E-08 73.4 33.3 248 347-627 34-283 (349)
278 3v65_B Low-density lipoprotein 98.3 0.00061 2.1E-08 75.9 31.4 248 348-628 78-327 (386)
279 2xbg_A YCF48-like protein; pho 98.3 0.0018 6.1E-08 70.3 34.0 278 346-660 35-319 (327)
280 3qqz_A Putative uncharacterize 98.3 0.00015 5.3E-09 74.1 23.6 202 841-1048 26-252 (255)
281 3v65_B Low-density lipoprotein 98.3 0.00029 1E-08 78.6 28.2 236 845-1104 80-320 (386)
282 3qqz_A Putative uncharacterize 98.2 0.00076 2.6E-08 69.0 27.9 201 346-574 26-251 (255)
283 3tc9_A Hypothetical hydrolase; 98.2 0.00018 6.3E-09 81.4 25.9 247 843-1101 138-429 (430)
284 4hw6_A Hypothetical protein, I 98.2 0.00024 8.1E-09 80.4 26.5 248 843-1101 140-432 (433)
285 3p5b_L Low density lipoprotein 98.2 0.00099 3.4E-08 74.5 31.3 208 841-1057 111-328 (400)
286 1ijq_A LDL receptor, low-densi 98.2 0.0029 9.8E-08 68.3 34.1 231 423-664 4-239 (316)
287 2xe4_A Oligopeptidase B; hydro 98.2 0.0003 1E-08 86.3 28.8 201 405-617 169-398 (751)
288 2xbg_A YCF48-like protein; pho 98.2 0.005 1.7E-07 66.7 35.6 194 842-1047 122-320 (327)
289 1k3i_A Galactose oxidase precu 98.2 8E-05 2.7E-09 90.1 23.0 239 843-1091 244-530 (656)
290 4hw6_A Hypothetical protein, I 98.1 0.00033 1.1E-08 79.2 24.3 244 777-1048 142-432 (433)
291 3tc9_A Hypothetical hydrolase; 98.1 0.00085 2.9E-08 75.9 27.3 243 777-1048 140-429 (430)
292 3p5b_L Low density lipoprotein 98.1 0.005 1.7E-07 68.8 33.3 232 422-664 85-321 (400)
293 3sov_A LRP-6, low-density lipo 98.1 0.0013 4.6E-08 70.7 26.9 205 842-1057 35-246 (318)
294 3kya_A Putative phosphatase; s 98.0 0.0018 6E-08 73.1 27.5 253 843-1104 140-477 (496)
295 3sov_A LRP-6, low-density lipo 98.0 0.01 3.5E-07 63.7 31.8 237 361-627 7-246 (318)
296 3kya_A Putative phosphatase; s 98.0 0.0035 1.2E-07 70.7 28.3 253 777-1054 142-480 (496)
297 3m0c_C LDL receptor, low-densi 97.9 0.005 1.7E-07 74.6 30.5 208 841-1057 423-640 (791)
298 1n7d_A LDL receptor, low-densi 97.9 7.7E-05 2.6E-09 90.0 14.6 208 842-1058 406-623 (699)
299 3m0c_C LDL receptor, low-densi 97.8 0.023 8E-07 68.8 33.5 232 422-664 397-633 (791)
300 2xtc_A F-box-like/WD repeat-co 97.7 2.5E-05 8.5E-10 62.6 4.4 36 1-36 1-36 (90)
301 2xzh_A Clathrin heavy chain 1; 97.7 0.06 2.1E-06 55.7 31.9 233 846-1104 71-334 (365)
302 3amr_A 3-phytase; beta-propell 97.7 0.0089 3.1E-07 63.4 25.0 196 852-1057 39-272 (355)
303 3amr_A 3-phytase; beta-propell 97.7 0.0061 2.1E-07 64.6 22.9 185 469-662 42-262 (355)
304 2xzh_A Clathrin heavy chain 1; 97.6 0.068 2.3E-06 55.3 29.2 238 351-621 71-334 (365)
305 2p9w_A MAL S 1 allergenic prot 97.6 0.0096 3.3E-07 62.5 23.0 205 841-1049 12-265 (334)
306 1n7d_A LDL receptor, low-densi 97.6 0.00034 1.1E-08 84.4 13.9 227 856-1104 380-616 (699)
307 1bpo_A Protein (clathrin); cla 97.6 0.14 4.8E-06 55.2 32.3 234 845-1104 69-333 (494)
308 2ism_A Putative oxidoreductase 97.5 0.025 8.6E-07 61.8 26.1 230 842-1090 31-333 (352)
309 3a9g_A Putative uncharacterize 97.5 0.046 1.6E-06 59.6 27.9 230 841-1090 28-330 (354)
310 1bpo_A Protein (clathrin); cla 97.5 0.18 6.2E-06 54.4 33.3 261 566-958 47-333 (494)
311 3sre_A PON1, serum paraoxonase 97.4 0.026 8.9E-07 60.9 23.4 206 411-627 52-308 (355)
312 2nxp_A Transcription initiatio 97.2 0.00059 2E-08 63.4 7.6 82 67-149 48-136 (156)
313 2j4b_A TAF5, transcription ini 97.2 0.00023 8E-09 64.3 4.5 81 67-149 29-116 (138)
314 2p9w_A MAL S 1 allergenic prot 97.1 0.0074 2.5E-07 63.4 15.4 166 882-1049 12-215 (334)
315 2g8s_A Glucose/sorbosone dehyd 97.1 0.082 2.8E-06 57.7 24.6 240 842-1100 18-350 (353)
316 1cru_A Protein (soluble quinop 97.0 0.35 1.2E-05 54.5 29.1 105 841-945 26-163 (454)
317 3ii7_A Kelch-like protein 7; p 97.0 0.083 2.8E-06 56.4 23.2 226 853-1104 12-274 (306)
318 3a9g_A Putative uncharacterize 97.0 0.24 8.1E-06 53.9 26.6 230 347-607 29-330 (354)
319 2j49_A Transcription initiatio 97.0 0.00039 1.3E-08 63.5 3.5 99 67-180 31-136 (148)
320 2ism_A Putative oxidoreductase 97.0 0.052 1.8E-06 59.3 21.3 229 410-651 32-333 (352)
321 2vpj_A Kelch-like protein 12; 96.9 0.08 2.7E-06 56.4 22.3 231 852-1109 14-283 (301)
322 2xn4_A Kelch-like protein 2; s 96.9 0.093 3.2E-06 55.9 22.0 232 419-664 15-277 (302)
323 2vpj_A Kelch-like protein 12; 96.8 0.049 1.7E-06 58.1 19.6 232 419-664 14-279 (301)
324 3ii7_A Kelch-like protein 7; p 96.8 0.13 4.3E-06 55.0 22.9 230 421-664 13-273 (306)
325 2xn4_A Kelch-like protein 2; s 96.8 0.16 5.3E-06 54.1 23.5 231 852-1109 15-281 (302)
326 2g8s_A Glucose/sorbosone dehyd 96.6 0.66 2.3E-05 50.4 26.8 236 410-650 19-340 (353)
327 1zgk_A Kelch-like ECH-associat 96.6 0.19 6.5E-06 53.6 22.2 234 849-1109 21-292 (308)
328 3sre_A PON1, serum paraoxonase 96.6 0.12 4.3E-06 55.5 19.9 202 843-1057 51-308 (355)
329 4asc_A Kelch repeat and BTB do 96.5 0.43 1.5E-05 51.0 24.1 223 861-1109 12-282 (315)
330 3pbp_A Nucleoporin NUP82; beta 96.5 0.1 3.5E-06 56.4 18.1 151 847-1000 26-207 (452)
331 3sbq_A Nitrous-oxide reductase 96.4 1.8 6.1E-05 48.4 30.2 114 842-958 323-480 (638)
332 4asc_A Kelch repeat and BTB do 96.4 0.19 6.6E-06 53.8 20.3 228 422-664 7-278 (315)
333 1xi4_A Clathrin heavy chain; a 96.4 0.13 4.4E-06 64.3 20.2 202 846-1057 70-297 (1630)
334 3pbp_A Nucleoporin NUP82; beta 96.3 0.15 5.1E-06 55.1 18.2 150 894-1045 31-208 (452)
335 1zgk_A Kelch-like ECH-associat 96.2 0.27 9.2E-06 52.4 20.5 234 417-664 22-288 (308)
336 3das_A Putative oxidoreductase 96.2 1.7 6E-05 46.4 31.4 101 842-944 202-326 (347)
337 3das_A Putative oxidoreductase 96.0 2 6.9E-05 45.9 27.9 114 345-474 30-158 (347)
338 2woz_A Kelch repeat and BTB do 96.0 0.58 2E-05 50.0 21.8 230 422-664 18-288 (318)
339 2uvk_A YJHT; unknown function, 95.9 0.53 1.8E-05 51.4 21.5 231 852-1104 19-344 (357)
340 1xi4_A Clathrin heavy chain; a 95.9 0.8 2.7E-05 57.4 23.9 99 566-674 47-145 (1630)
341 3s25_A Hypothetical 7-bladed b 95.9 2.2 7.5E-05 44.9 27.5 175 846-1050 57-256 (302)
342 1tl2_A L10, protein (tachylect 95.8 0.055 1.9E-06 52.7 10.7 144 842-998 41-203 (236)
343 1uuj_A Platelet-activating fac 95.6 0.012 4.2E-07 46.8 4.3 55 5-59 10-66 (88)
344 2be1_A Serine/threonine-protei 95.2 0.17 5.7E-06 54.0 13.1 200 896-1107 11-236 (339)
345 1cru_A Protein (soluble quinop 95.2 2.5 8.4E-05 47.5 23.7 109 925-1037 26-162 (454)
346 2woz_A Kelch repeat and BTB do 95.0 1.4 4.6E-05 47.1 20.3 192 849-1054 53-292 (318)
347 1tl2_A L10, protein (tachylect 94.9 0.08 2.7E-06 51.5 8.6 109 884-1000 42-158 (236)
348 3s25_A Hypothetical 7-bladed b 94.9 4.4 0.00015 42.5 25.4 180 351-576 57-255 (302)
349 2be1_A Serine/threonine-protei 94.8 0.97 3.3E-05 48.1 17.7 115 421-540 11-140 (339)
350 2uvk_A YJHT; unknown function, 94.8 1.3 4.5E-05 48.1 19.8 192 852-1057 65-350 (357)
351 3sbq_A Nitrous-oxide reductase 93.6 11 0.00039 42.2 28.5 197 852-1050 141-409 (638)
352 3b7f_A Glycosyl hydrolase, BNR 92.7 14 0.00047 40.6 26.9 260 841-1109 54-377 (394)
353 4hvt_A Ritya.17583.B, post-pro 92.3 23 0.00078 42.1 27.4 247 351-618 133-429 (711)
354 2wg3_C Hedgehog-interacting pr 91.5 21 0.0007 40.0 25.7 55 410-464 15-79 (463)
355 2zwa_A Leucine carboxyl methyl 91.0 7.1 0.00024 46.7 19.5 198 851-1053 396-639 (695)
356 2zwa_A Leucine carboxyl methyl 89.4 13 0.00044 44.4 20.0 195 463-664 396-636 (695)
357 3qhy_B Beta-lactamase inhibito 89.0 19 0.00065 37.1 18.5 183 843-1050 64-247 (282)
358 3kci_A Probable E3 ubiquitin-p 88.8 30 0.001 37.7 22.8 204 884-1102 106-345 (389)
359 3qhy_B Beta-lactamase inhibito 88.6 24 0.00083 36.3 21.4 223 348-620 25-247 (282)
360 4gq2_M Nucleoporin NUP120; bet 86.8 29 0.001 43.0 21.2 42 1018-1059 235-276 (950)
361 4hvt_A Ritya.17583.B, post-pro 84.9 48 0.0016 39.4 20.9 245 411-662 131-429 (711)
362 2wg3_C Hedgehog-interacting pr 84.8 54 0.0018 36.5 29.3 54 590-643 15-79 (463)
363 3q6k_A 43.2 kDa salivary prote 84.3 48 0.0017 35.6 21.1 167 478-650 124-341 (381)
364 3q6k_A 43.2 kDa salivary prote 82.2 58 0.002 34.9 21.6 172 862-1036 123-341 (381)
365 3b7f_A Glycosyl hydrolase, BNR 76.6 89 0.0031 33.8 30.4 236 408-657 54-366 (394)
366 3uc1_A DNA gyrase subunit A; D 71.5 1E+02 0.0036 32.3 27.0 159 841-1003 94-277 (327)
367 3no0_A DNA gyrase subunit A; D 66.3 1.2E+02 0.004 30.9 20.9 112 841-956 67-196 (276)
368 3no0_A DNA gyrase subunit A; D 64.4 1.3E+02 0.0044 30.6 23.2 203 884-1102 25-246 (276)
369 4gq2_M Nucleoporin NUP120; bet 64.0 65 0.0022 39.9 14.9 39 927-965 237-275 (950)
370 3f7f_A Nucleoporin NUP120; nuc 61.2 19 0.00064 42.1 8.5 36 1021-1058 224-259 (729)
371 1zi0_A DNA gyrase subunit A; b 54.9 2E+02 0.0067 29.8 27.7 235 418-661 1-275 (307)
372 1wp5_A Topoisomerase IV; broke 54.2 2.1E+02 0.0072 29.8 26.9 241 851-1102 3-277 (323)
373 4fhn_B Nucleoporin NUP120; pro 53.3 9.6 0.00033 48.6 4.9 42 1019-1060 238-279 (1139)
374 1wp5_A Topoisomerase IV; broke 50.8 2.4E+02 0.008 29.4 25.8 194 418-619 3-225 (323)
375 2wpv_A GET4, UPF0363 protein Y 47.3 72 0.0025 33.1 9.5 111 38-187 17-128 (312)
376 3zwu_A Alkaline phosphatase PH 45.0 69 0.0024 36.8 9.8 64 543-606 477-548 (592)
377 1sqj_A OXG-RCBH, oligoxylogluc 42.6 5.1E+02 0.017 31.0 25.3 158 346-520 14-190 (789)
378 2d68_A FOP, FGFR1OP; alpha hel 42.0 22 0.00074 28.2 3.4 29 7-35 20-48 (82)
379 1zi0_A DNA gyrase subunit A; b 41.2 3.2E+02 0.011 28.2 28.4 240 852-1102 2-277 (307)
380 4d9s_A UVB-resistance protein 41.1 3.7E+02 0.013 28.9 28.3 201 884-1102 122-357 (406)
381 3l6v_A GYRA, DNA gyrase subuni 40.4 3.6E+02 0.012 28.6 27.9 193 850-1051 4-267 (370)
382 2ion_A PDCD4, programmed cell 38.7 44 0.0015 30.4 5.5 33 81-115 16-48 (152)
383 3l6v_A GYRA, DNA gyrase subuni 38.2 3.9E+02 0.013 28.4 26.7 149 416-574 3-178 (370)
384 4a9v_A PHOX; hydrolase, beta-p 38.0 1.2E+02 0.004 34.5 9.8 64 543-606 477-548 (592)
385 3lpz_A GET4 (YOR164C homolog); 37.7 1.2E+02 0.0041 31.7 9.3 113 38-188 16-131 (336)
386 3zwu_A Alkaline phosphatase PH 37.3 67 0.0023 36.9 8.1 59 884-943 477-548 (592)
387 1suu_A DNA gyrase subunit A; t 36.8 3.7E+02 0.013 27.7 28.7 192 851-1050 6-232 (312)
388 3elq_A Arylsulfate sulfotransf 36.5 4.3E+02 0.015 29.9 14.3 131 979-1113 210-395 (571)
389 4a9v_A PHOX; hydrolase, beta-p 35.3 1.3E+02 0.0044 34.1 9.6 60 841-901 475-548 (592)
390 3uc1_A DNA gyrase subunit A; D 33.6 4.3E+02 0.015 27.5 27.1 204 841-1050 41-280 (327)
391 3f7f_A Nucleoporin NUP120; nuc 33.3 1.1E+02 0.0038 35.7 9.0 36 885-923 224-259 (729)
392 2k9m_A RNA polymerase sigma fa 32.2 58 0.002 28.6 5.0 90 3-104 19-122 (130)
393 1sqj_A OXG-RCBH, oligoxylogluc 30.8 7.5E+02 0.026 29.5 24.1 149 408-560 14-188 (789)
394 3kci_A Probable E3 ubiquitin-p 29.2 5.5E+02 0.019 27.3 30.6 229 420-663 62-345 (389)
395 1kdl_A YOPD protein; yersinia, 29.2 31 0.0011 19.9 1.7 15 4-18 3-17 (26)
396 2zux_A YESW protein; beta-prop 28.4 6.8E+02 0.023 28.2 27.5 68 576-643 351-424 (591)
397 4fhn_B Nucleoporin NUP120; pro 25.8 1.2E+02 0.004 38.6 8.4 38 455-494 239-276 (1139)
398 4asv_A Small glutamine-rich te 25.0 40 0.0014 27.1 2.4 19 1-19 15-33 (92)
399 4gco_A Protein STI-1; structur 24.2 2.6E+02 0.0089 23.8 8.2 98 14-118 22-124 (126)
400 3mkr_A Coatomer subunit epsilo 23.3 5E+02 0.017 26.2 11.5 85 6-101 65-157 (291)
401 2lni_A Stress-induced-phosphop 22.8 3.3E+02 0.011 22.6 9.8 90 7-102 18-112 (133)
402 1oyi_A Double-stranded RNA-bin 22.8 52 0.0018 26.1 2.7 30 6-37 16-45 (82)
403 3mkr_A Coatomer subunit epsilo 21.4 2.7E+02 0.0093 28.2 9.0 104 7-118 102-209 (291)
404 2zux_A YESW protein; beta-prop 20.8 9.3E+02 0.032 27.1 26.3 186 456-662 328-531 (591)
405 2nsz_A Programmed cell death p 20.2 3.2E+02 0.011 23.8 7.6 23 81-103 14-36 (129)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.6e-68 Score=644.10 Aligned_cols=565 Identities=21% Similarity=0.361 Sum_probs=484.8
Q ss_pred Eeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 341 ~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
..|. |.+.|++++|||||+ +||+|+.|+.|+|||. +++.+.. +.+|...|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 4455 999999999999998 6899999999999995 5555443 6789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
|++||+++.|++|+|||.. ++.+ ..+.+|...|.+++|+|+++ +|++++.|+.+++|+... .....+.+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG-QLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTC-CEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeeccccc-ceeeeccCCCCc
Confidence 9999999999999999965 4443 37889999999999999999 899999999999999654 455677789999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
|.++.++|+. ..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred eeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcE
Confidence 9999998865 789999999999999854 3445566778889999999999999999985 889999995 6788
Q ss_pred EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
+..+.+|.. .|.+++|+|++++|++++.|+.|++||.. ++.+..+..+.. .|.+++|+|+++.+++++.|+.|++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~--~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS--SVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 888999887 89999999999999999999999999964 677777776644 79999999999999999999999999
Q ss_pred EcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccc
Q 001159 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1135)
Q Consensus 660 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
+.... ..+.+.
T Consensus 290 ~~~~~--~~~~~~------------------------------------------------------------------- 300 (577)
T 2ymu_A 290 NRNGQ--LLQTLT------------------------------------------------------------------- 300 (577)
T ss_dssp ETTSC--EEEEEC-------------------------------------------------------------------
T ss_pred eCCCc--EEEEEe-------------------------------------------------------------------
Confidence 96432 111111
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccC
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 819 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 819 (1135)
.|...| .+++|+|+++.+++++.|+.+++|++...
T Consensus 301 ------------------------------~h~~~v-~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------- 335 (577)
T 2ymu_A 301 ------------------------------GHSSSV-WGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------- 335 (577)
T ss_dssp ------------------------------CCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTSC--------------
T ss_pred ------------------------------cCCCCe-EEEEECCCCCEEEEEeCCCeEEEEeCCCC--------------
Confidence 144566 99999999999999999999999975321
Q ss_pred eeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEE
Q 001159 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 898 (1135)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 898 (1135)
.+.. +.+ | ...+.+++|+|++++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|
T Consensus 336 --------~~~~--~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l 400 (577)
T 2ymu_A 336 --------HLQT--LTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTI 400 (577)
T ss_dssp --------EEEE--ECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCE
T ss_pred --------eeEE--EeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEE
Confidence 1111 222 6 88999999999999999998 899999995 5788899999999999999999 89999
Q ss_pred EEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc
Q 001159 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 978 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 978 (1135)
++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..|
T Consensus 401 ~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v 470 (577)
T 2ymu_A 401 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSV 470 (577)
T ss_dssp EEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCE
T ss_pred EEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCE
Confidence 99999999999995 5778889999999999999999999999999999999999754 3 233444555 689
Q ss_pred eEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 979 TKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
.+++|+||+++|++ +.|+.|++||.+++.+..+. +|...|++++|+|||++|++++.||.|++||. +++.+..+.
T Consensus 471 ~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~ 546 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 546 (577)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence 99999999999999 57899999999888777664 56899999999999999999999999999996 577777766
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEe
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1099 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~ 1099 (1135)
.| ...+.+++|+| |+++|+|++.||+|++||
T Consensus 547 ~h----------~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GH----------SSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CC----------SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CC----------CCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 54 24566899999 789999999999999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.7e-66 Score=626.29 Aligned_cols=573 Identities=13% Similarity=0.158 Sum_probs=458.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.+.+.+++|+|||+ +||+++ ++.|+||++.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 456889999999998 677776 57999999987765543 778999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCeeeeeecCCCCCe
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+|+++ .|++++.+ +.|++|| +++....+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765433 2236788999999999999999 77777754 3667776 677788899999999
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++. ..|++|+.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999998652 36999999999999999888888889999999999999999999999985 889999999999998
Q ss_pred EEee-------cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-CCCcceEEEcCCCCEEEEEEC
Q 001159 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 581 ~~~~-------~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
..+. +|.+ .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5666 899999999999999999999999999999999988865422 112345555 6889999999
Q ss_pred CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCc
Q 001159 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1135)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1135)
|+.+++|+..++ ...+.+.
T Consensus 303 d~~i~~~~~~~~-~~~~~~~------------------------------------------------------------ 321 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVRY------------------------------------------------------------ 321 (611)
T ss_dssp TCCEEEEETTTT-EEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEEc------------------------------------------------------------
Confidence 999999998765 2221111
Q ss_pred ccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCc
Q 001159 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 733 ~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~ 812 (1135)
.|...| .+++|+|||++|++++.|+.|++||+..
T Consensus 322 -------------------------------------gh~~~v-~~l~~spdg~~l~s~s~D~~v~~Wd~~~-------- 355 (611)
T 1nr0_A 322 -------------------------------------GHNKAI-TALSSSADGKTLFSADAEGHINSWDIST-------- 355 (611)
T ss_dssp -------------------------------------CCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred -------------------------------------CCCCCE-EEEEEeCCCCEEEEEeCCCcEEEEECCC--------
Confidence 155666 9999999999999999999999997643
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE---EeCCCCCeEEE
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFL 888 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~---~~~h~~~v~~l 888 (1135)
+........ .| ...|.+++|++++. +++++ |+++++|++.++..... .........++
T Consensus 356 --------------~~~~~~~~~--~h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 356 --------------GISNRVFPD--VH-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp --------------CCEEECSSC--SC-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred --------------Cceeeeccc--CC-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 222221112 27 89999999998875 45555 99999999876543210 01133456889
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+|+| ++..++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ...
T Consensus 418 ~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~- 487 (611)
T 1nr0_A 418 AVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT- 487 (611)
T ss_dssp EECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-
T ss_pred EEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-
Confidence 9999 78777766 567899998 444 55565 88899999999999999999999999999998764221 112
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-C-CceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-K-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~-~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
.+|. ..|.+++|+|||++|++ +.|++|++|++ + ++.... ....+|...|.+++|||||++||+|+.|++|++|
T Consensus 488 ~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 488 IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEEECCCcEEEE
Confidence 3344 67999999999999999 57999999999 4 443322 1223479999999999999999999999999999
Q ss_pred ECCCcee-e-eeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRF-R-CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+++++.. . ..+..| ....+.+++|+| +++ |++|+.||+|++|+++
T Consensus 564 ~~~~~~~~~~~~~~~h---------~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAH---------AMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTCTTSCCEEETTSS---------TTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred ECCCcccccchhhccC---------cccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 9998652 2 222222 024567899998 666 9999999999999974
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-64 Score=614.49 Aligned_cols=567 Identities=16% Similarity=0.176 Sum_probs=456.8
Q ss_pred cCCcceeeecCCCCCCcccc------CCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccccc
Q 001159 312 TGQSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384 (1135)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~------~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~ 384 (1135)
.+....++|+|+|+.++... ++...++...++. |.+.|++++|||+|+ +||+|+.||+|+|||+.+++....
T Consensus 18 ~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee
Confidence 34566688888888766543 2223455666676 999999999999998 799999999999999976543211
Q ss_pred CCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEE
Q 001159 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~ 460 (1135)
..+.+|.+.|.+++|+|||++||+++.+ +.|++||. +.... .+.+|...|.+++
T Consensus 97 -----------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~ 154 (611)
T 1nr0_A 97 -----------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVD 154 (611)
T ss_dssp -----------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEE
T ss_pred -----------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEE
Confidence 1156799999999999999999999875 46777774 44333 6789999999999
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--
Q 001159 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 538 (1135)
|+|++.. .|++|+.|++|++||..+++++.++.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 155 f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 155 FKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp ECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred ECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccc
Confidence 9999874 59999999999999999999999999999999999999854 899999999999999999888777663
Q ss_pred -----CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC--CceeEEEecCCCCEEEEEeCCCe
Q 001159 539 -----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 539 -----~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~dg~ 611 (1135)
.|...|.+++|+|++++|++++. |++|++||+.+++.+..+..+.. ..+..+.| +++.+++++.|+.
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGF 305 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCC
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCc
Confidence 68889999999999999999985 88999999999999988875432 13445556 6788999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCc
Q 001159 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+++|+...++....+.+|.. .|.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 306 i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~-------------------- 362 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF-------------------- 362 (611)
T ss_dssp EEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS--------------------
T ss_pred EEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec--------------------
Confidence 99999999988888876644 89999999999999999999999999998762 11110
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
...|
T Consensus 363 ----------------------------------------------------------------------------~~~h 366 (611)
T 1nr0_A 363 ----------------------------------------------------------------------------PDVH 366 (611)
T ss_dssp ----------------------------------------------------------------------------SCSC
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 0114
Q ss_pred ccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec
Q 001159 772 ASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 851 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~ 851 (1135)
...| .+++|++++ .+++++.|+.+++|+......... ...... . .....+++|+|
T Consensus 367 ~~~v-~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~ 421 (611)
T 1nr0_A 367 ATMI-TGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANK-----L-SSQPLGLAVSA 421 (611)
T ss_dssp SSCE-EEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEE-----C-SSCEEEEEECT
T ss_pred cceE-EEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeee-----c-CCCCcEEEEeC
Confidence 5566 999999876 588999999999998654221000 000000 1 44567899999
Q ss_pred CCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee--eEEecCcCCCeE
Q 001159 852 NDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRIT 929 (1135)
Q Consensus 852 dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~i~ 929 (1135)
+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|.+.|+
T Consensus 422 dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~ 495 (611)
T 1nr0_A 422 DGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEIT 495 (611)
T ss_dssp TSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEE
T ss_pred CCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceE
Confidence 99988888899999999 344 55555 888999999999 899999999999999999987653 234 67999999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCC-CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCc
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE 1006 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~ 1006 (1135)
+|+|||||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++|++ +.|++|++||+ .+.
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999999999999999999999987 432111 0122355 78999999999999999 57999999999 433
Q ss_pred eeeccCCCCCC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 1007 CSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1007 ~~~~~~~~~~h-~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
... .....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 570 ~~~-~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 570 DHP-IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCC-EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccc-chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 221 0113467 78999999999999 9999999999999974
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-63 Score=607.21 Aligned_cols=555 Identities=21% Similarity=0.367 Sum_probs=476.5
Q ss_pred cccCCcceeeecCCCCCCccccCCC------cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcccc
Q 001159 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1135)
Q Consensus 310 ~~~~~~~~v~~s~~g~~~~~~~~d~------~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~ 382 (1135)
.|.+.|.+++|+|||+++++...|. .++++++++. |.+.|++++|||||+ +||+|+.|+.|+|||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 3567899999999999988876543 4667788888 999999999999998 78999999999999964 4444
Q ss_pred ccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEe
Q 001159 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1135)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s 462 (1135)
.. +.+|...|.+++|+|++++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999977632 23567899999999999
Q ss_pred cCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC
Q 001159 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
|++. .+++++.++.+++|+. ..........|...|.++.++|++ .++++++.|+.|++||. +.+....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 9999 7899999999999995 455566777899999999998865 89999999999999995 4566777888999
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
.|.+++|+|++++|++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++|+.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcE
Confidence 9999999999999999875 889999995 5778888998887 89999999999999999999999999965 567
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+..+..|.. .|.+++|+|+++++++++.|+.|++||.... . ...+.
T Consensus 296 ~~~~~~h~~--~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~~------------------------------ 341 (577)
T 2ymu_A 296 LQTLTGHSS--SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTLT------------------------------ 341 (577)
T ss_dssp EEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEEC------------------------------
T ss_pred EEEEecCCC--CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEEe------------------------------
Confidence 777776644 7999999999999999999999999997543 1 11111
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 782 (1135)
.|...+ .+++|+
T Consensus 342 -------------------------------------------------------------------~~~~~v-~~~~~s 353 (577)
T 2ymu_A 342 -------------------------------------------------------------------GHSSSV-WGVAFS 353 (577)
T ss_dssp -------------------------------------------------------------------CCSSCE-EEEEEC
T ss_pred -------------------------------------------------------------------CCCCCE-EEEEEC
Confidence 144556 999999
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G 861 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d 861 (1135)
|+|+.|++++.||.+++|+... ..+.. +.+ | ...|.+++|+|||++|++++ |
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETT
T ss_pred CCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCC
Confidence 9999999999999999997421 11111 222 6 88999999999999999998 8
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEE
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV 941 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~ 941 (1135)
+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|+
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99999995 5788899999999999999999 8999999999999999996 5677889999999999999999999999
Q ss_pred EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeeccCCCCCCCCC
Q 001159 942 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAP 1020 (1135)
Q Consensus 942 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~ 1020 (1135)
+++.|++|++||.. ++ .+....+|. ..|++++|+|||++|++ +.|+.|+|||.+++.+..+ .+|...
T Consensus 484 s~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~ 551 (577)
T 2ymu_A 484 SASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSS 551 (577)
T ss_dssp EEETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSC
T ss_pred EEeCCCEEEEEcCC-CC-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCC
Confidence 99999999999964 34 344455665 68999999999999999 5789999999988777665 357899
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
|++++|+|||++|++++.|++|++||
T Consensus 552 v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-63 Score=661.89 Aligned_cols=613 Identities=13% Similarity=0.172 Sum_probs=502.8
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
.|.+.|++++|||+|+ ++|+|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 3999999999999998 789999999999999999887654 67899999999999999999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
|+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999987665 77899999999999996554489999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-------------CCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
+|+|++ .++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 999865 89999999999999999987766544321 23678899999999999886 67899
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
+||..++..+..+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..|.. .|.+++|+|++++++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEE
Confidence 9999999998888744444899999999999999999999999999999999999887754 89999999999999999
Q ss_pred ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCC
Q 001159 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.||.|++|++.+... ......... ...
T Consensus 901 s~dg~v~vw~~~~~~~-~~~~~~~~~---------------------------------------------------~~~ 928 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCK-NSAIVLKQE---------------------------------------------------IDV 928 (1249)
T ss_dssp ETTSCEEEEEHHHHHS-CCSSSEEEE---------------------------------------------------EEE
T ss_pred eCCCeEEEEEccccce-eeeecccce---------------------------------------------------eeE
Confidence 9999999999754311 000000000 000
Q ss_pred Ccccccccccc-cccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 731 SRLVDVKPRVA-EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 731 ~~~~~~~~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
.+.++...++. .....+.++...... ... .....+ .+++|+|+++++++++.+|.|++|++..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i-~~~~~sp~g~~l~~g~~~g~i~i~d~~~----- 992 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQV-SCCCLSPHLEYVAFGDEDGAIKIIELPN----- 992 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCC----EEE------ECCSCE-EEEEECTTSSEEEEEETTSCCEEEETTT-----
T ss_pred EEcCCCcEEEEecCCcceEEEecCcce----EEE------cccCcE-EEEEEcCCCCEEEEEcCCCCEEEEEcCC-----
Confidence 01111111111 222344444433211 000 123456 9999999999999999999999997643
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEE
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 888 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l 888 (1135)
+..... +.+ | ...|.+++|+|+|+++++++ ||.|++||+.+++... +.+|...|.++
T Consensus 993 -----------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 993 -----------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDF 1050 (1249)
T ss_dssp -----------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEE
T ss_pred -----------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEE
Confidence 222221 222 7 88999999999999999998 8999999999987764 55799999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
+|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||++++++++.|++|++||+.+++. +...
T Consensus 1051 ~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l 1123 (1249)
T 3sfz_A 1051 RLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHEL 1123 (1249)
T ss_dssp EECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCC
T ss_pred EEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeee
Confidence 9999 55 577899999999999999999999999999999999999999999999999999999998773 4455
Q ss_pred CCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCC------CCCCCCCEEEEEEeeCCCEEEEEeCCC
Q 001159 969 AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSP------KDALPAPISSAIYSCDGLLVYAGFCDG 1040 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~------~~~h~~~i~~~~~s~d~~~l~~~~~dg 1040 (1135)
.+|. ..|.+++|+|||++|++ +.|+.|++||+ +++.+..+.+ ...|...|++++|+|||++|++++ |
T Consensus 1124 ~~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g 1198 (1249)
T 3sfz_A 1124 KGHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--G 1198 (1249)
T ss_dssp CCCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--S
T ss_pred ccCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--C
Confidence 5665 68999999999999999 57899999999 6666554411 245788999999999999999885 8
Q ss_pred eEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1041 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.|++||+.+++.+..+..+. ..+.++.|+| ++.+|++++.||.|++|++.
T Consensus 1199 ~v~vwd~~~g~~~~~~~~~~----------~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1199 YLKWWNVATGDSSQTFYTNG----------TNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp SEEEBCSSSCBCCCCCCCSS----------CCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred eEEEEECCCCceeeeeeccC----------CcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 99999999999887766442 2344678898 78999999999999999975
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.7e-59 Score=572.45 Aligned_cols=556 Identities=10% Similarity=0.179 Sum_probs=473.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc----cccccCCceeecccccccchhhhhccCCCcc-eEEEEEcC-
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp- 418 (1135)
|.+.|++++|||+|+ +||+++ ++.|.|||+.++ +.... +.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 678999999999998 577776 889999999987 44432 6789999 99999999
Q ss_pred -CCCeEEEEeCCCeEEEEEeCCCC-----ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCe
Q 001159 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1135)
Q Consensus 419 -d~~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~ 488 (1135)
++++||+|+.||.|++||+.++. .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997541 1123346778999999999999999 78888877 6888887 677
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC---cEEEEEEcCC-CCEEEEEecCCC
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~-~~~l~~~~~~~~ 564 (1135)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ +++|++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999998752 3899999999999999999888888998988 9999999999 999999875
Q ss_pred CCCeEEEEECCCCeEEEEe-e---cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCcceE
Q 001159 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 638 (1135)
++.|++||+.+++.+..+ . .|.. .|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 889999999999999999 5 6665 89999999 999999999999999999999999998876531 1356777
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCC
Q 001159 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1135)
Q Consensus 639 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 718 (1135)
.|. ++.++++++.||.|++||+.++ +....+.+|...+..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------------------- 344 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------------------- 344 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE--------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE--------------------------------------
Confidence 785 8999999999999999999886 555666666554332
Q ss_pred CccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceee
Q 001159 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHK 798 (1135)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~ 798 (1135)
..+ ++ +++++.|+.|++|++. .+. ..|...| .+++| +++..+++++.|+.++
T Consensus 345 -----------~~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v-~~~~~-~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 345 -----------LTV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLI-VSLDN-SKAQEYSSISWDDTLK 396 (615)
T ss_dssp -----------EET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCE-EEEEC-CSTTCCEEEETTTEEE
T ss_pred -----------EEe-cC--cEEECCCCeEEEEEch---------hhc---CcccCce-EEEEE-CCCcEEEEEeCCCCEE
Confidence 223 33 5666778999999987 112 3477888 99999 7778899999999999
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF 878 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~ 878 (1135)
+|++..... ...+.+++++|++.+++++.++.+.+|++.+++.+..+
T Consensus 397 ~~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (615)
T 1pgu_A 397 VNGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 443 (615)
T ss_dssp ETTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec
Confidence 997653221 33578899999999999988899999999999999888
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEcccceee-EEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 879 MSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 879 ~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~~~~~-~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
. |...+++++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 444 ~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 519 (615)
T 1pgu_A 444 R-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519 (615)
T ss_dssp E-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred c-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence 7 88899999998 579999999 999999999988766 67889999999999999999999999999999999998
Q ss_pred CceeceeeeecCCC-CCCCCCCceEEEECC----------CCcEEEE-EecCeEEEEec-CC-ceeeccCCCCCCCCCEE
Q 001159 957 WEKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLV-VHESQISVYDS-KL-ECSRSWSPKDALPAPIS 1022 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----------dg~~l~~-~~d~~v~vwd~-~~-~~~~~~~~~~~h~~~i~ 1022 (1135)
++. +....+ |. ..|++++|+| ++++|++ +.|+.|++||+ ++ ..+..+ .+|...|+
T Consensus 520 ~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~ 588 (615)
T 1pgu_A 520 REV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVN 588 (615)
T ss_dssp TEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEE
T ss_pred Ccc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh---hcCccceE
Confidence 874 334444 54 7899999999 9999999 57999999999 44 455544 45689999
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1023 SAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1023 ~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+++|+||++ |++++.||.|++|++++
T Consensus 589 ~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 589 NLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEcCCCC-eEEecCCceEEEEeeec
Confidence 999999999 99999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9e-59 Score=615.97 Aligned_cols=572 Identities=16% Similarity=0.218 Sum_probs=480.1
Q ss_pred cccCCcceeeecCCCCCCccccCCC-------cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccc
Q 001159 310 IRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1135)
Q Consensus 310 ~~~~~~~~v~~s~~g~~~~~~~~d~-------~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~ 381 (1135)
.+.+.|.+++|+|+|+.+++...|. .+++.+.++. |.+.|++++|+|+|+ ++|+|+.||.|+|||+.+++.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCce
Confidence 4567899999999999888776554 5677788887 999999999999998 789999999999999999887
Q ss_pred cccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEE
Q 001159 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1135)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v 459 (1135)
+.. +.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|...|+++
T Consensus 692 ~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 692 VHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHC 749 (1249)
T ss_dssp EEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEE
T ss_pred EEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEE
Confidence 654 668999999999999 55689999999999999999987655 678999999999
Q ss_pred EEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC-------------CCCCeeEEEeeccCCccEEEEEEcCCeEEEE
Q 001159 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw 526 (1135)
+|+|+++ ++++++.||+|++||+.+++....+.. +...+.+++|+|++ ..+++++ ++.+.+|
T Consensus 750 ~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~-~~~v~~~ 824 (1249)
T 3sfz_A 750 RFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--DKIIVAA-KNKVLLF 824 (1249)
T ss_dssp EECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS--SEEEEEE-TTEEEEE
T ss_pred EEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC--CEEEEEc-CCcEEEE
Confidence 9999999 899999999999999999987766542 23478889998865 7787776 7899999
Q ss_pred eCcCCCceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEE
Q 001159 527 LYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 527 d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 605 (1135)
|+.+......+. .|...+.+++|+|+++++++++. ++.|++||..++..+..+.+|.. .|.+++|+|+++++++
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCceeeecCCCcc-ceEEEEECCCCCEEEE
Confidence 999988877655 78889999999999999999875 88999999999999999999988 8999999999999999
Q ss_pred EeCCCeEEEEECCCCce-----------------------------EEEEeCC------CCCCCcceEEEcCCCCEEEEE
Q 001159 606 AGDEFQIKFWDMDNMNM-----------------------------LTTVDAD------GGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 606 ~~~dg~i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
++.||.|++|++.+... +...... .....+.+++|+|+++++++|
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEE
Confidence 99999999999753210 0000000 012358899999999999999
Q ss_pred ECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCC
Q 001159 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1135)
Q Consensus 651 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1135)
+.+|.|++|++.++ .....+.
T Consensus 980 ~~~g~i~i~d~~~~-~~~~~~~---------------------------------------------------------- 1000 (1249)
T 3sfz_A 980 DEDGAIKIIELPNN-RVFSSGV---------------------------------------------------------- 1000 (1249)
T ss_dssp ETTSCCEEEETTTT-SCEEECC----------------------------------------------------------
T ss_pred cCCCCEEEEEcCCC-ceeeecc----------------------------------------------------------
Confidence 99999999998766 2221111
Q ss_pred CcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCC
Q 001159 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 810 (1135)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~ 810 (1135)
.|...| .+++|+|+|+++++++.||.|++|++..
T Consensus 1001 ---------------------------------------~h~~~v-~~l~~s~dg~~l~s~~~dg~i~vwd~~~------ 1034 (1249)
T 3sfz_A 1001 ---------------------------------------GHKKAV-RHIQFTADGKTLISSSEDSVIQVWNWQT------ 1034 (1249)
T ss_dssp ---------------------------------------CCSSCC-CCEEECSSSSCEEEECSSSBEEEEETTT------
T ss_pred ---------------------------------------cCCCce-EEEEECCCCCEEEEEcCCCEEEEEECCC------
Confidence 145556 8999999999999999999999997653
Q ss_pred CcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 811 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
+.... ... | ...+.+++|+|++.+++.+.||+|++||+.+++.+..+.+|...|++++|
T Consensus 1035 ----------------~~~~~--~~~--~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A 1035 ----------------GDYVF--LQA--H-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp ----------------TEEEC--CBC--C-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE
T ss_pred ----------------CceEE--Eec--C-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE
Confidence 22221 112 6 88999999999887665555999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceee-e---e
Q 001159 891 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF-I---Q 966 (1135)
Q Consensus 891 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~-~---~ 966 (1135)
+| ++++|++++.||.|++||+.+++++..+.+|.+.|++++|+|||++|++++.||+|++||+.+++...... . .
T Consensus 1094 s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A 1094 SS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172 (1249)
T ss_dssp CS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---
T ss_pred CC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccc
Confidence 99 89999999999999999999999999999999999999999999999999999999999999987544320 0 1
Q ss_pred cCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEE
Q 001159 967 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 967 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vw 1045 (1135)
...+|. ..|++++|+|||+++++++ +.|++||+ ++..+..+. .|...|.+++|+|||++|++++.||.|++|
T Consensus 1173 ~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1173 GTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFY---TNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp ----CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCC---CSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred cccccC---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeee---ccCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence 112333 6799999999999999875 89999999 776665543 457889999999999999999999999999
Q ss_pred ECC
Q 001159 1046 DAE 1048 (1135)
Q Consensus 1046 d~~ 1048 (1135)
++.
T Consensus 1246 ~l~ 1248 (1249)
T 3sfz_A 1246 QVL 1248 (1249)
T ss_dssp CCC
T ss_pred eec
Confidence 974
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-57 Score=568.57 Aligned_cols=603 Identities=10% Similarity=0.055 Sum_probs=438.9
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
...+.|.+.|++++|+|+|+ +||+|+.||.|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34456899999999999998 79999999999999987765432 124788999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee---------
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 490 (1135)
|++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ +|++|+.||+|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 443 778999999999999 8999999999999999988764
Q ss_pred --eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------------------CCcEEEEEEc
Q 001159 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1135)
Q Consensus 491 --~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s 550 (1135)
..+.+|.++|.+++|+|.+ +..+++|+.||.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 3457799999999999953 3689999999999 9999988877776655 4679999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEE--ee---cc------------cCCceeEEEec----CCC-CEEEEEeC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAGD 608 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~i~~s----~~~-~~l~~~~~ 608 (1135)
|+|++|++++. |+.|++||+++++.+.. +. .| ....|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 88999999999987754 21 22 12269999995 444 45666766
Q ss_pred C-----CeEEEEECC------------------CCceEEEEeCCCCCCCcceEEEcC----------CCCEEEEEECCCc
Q 001159 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1135)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~l~~~~~dg~ 655 (1135)
| ..+.+|++. +.+....+... +...|..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22334444321 123677777755 3447889999999
Q ss_pred EEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccc
Q 001159 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1135)
Q Consensus 656 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1135)
|++|++.++.........+... . +.. +.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l-~-----------------~~~----------------------------------~~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL-S-----------------WLR----------------------------------PL 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG-T-----------------TBT----------------------------------TB
T ss_pred EEEEECCCCCcccccccCCCcc-c-----------------ccC----------------------------------CC
Confidence 9999997663222211111000 0 000 00
Q ss_pred cccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccc
Q 001159 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 815 (1135)
Q Consensus 736 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 815 (1135)
.. .+........+|+......... . .+..+|...+ .+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~-~~~~s~~~~~~w~~~~~~~~~~--~--~~l~G~~~~v-~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~----- 472 (902)
T 2oaj_A 404 AT-TSMAASVPNKLWLGALSAAQNK--D--YLLKGGVRTK-RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN----- 472 (902)
T ss_dssp EE-EEEEEEEEHHHHHHHHHTTBCC--C--CSCCCSBCCC-CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-----
T ss_pred ee-EEEEEEcCHHHHHHHHhcccCC--C--CcccCCcCCC-CcccccccCcEEEEecCCCcEEEEECCCccccCC-----
Confidence 00 0001112233454321100000 0 1122356666 8889999999999999999999999865421000
Q ss_pred cccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCc----------------------
Q 001159 816 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF---------------------- 872 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~---------------------- 872 (1135)
..+... ... ..+..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ----~~~~~~----l~~-~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 473 ----ASFEVN----LSR-TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp ----BCEEEE----HHH-HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred ----ceEEee----chh-hcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 000000 000 001137 88999999999999999999 999999999765
Q ss_pred -----------------------cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-----Eec-C
Q 001159 873 -----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-G 923 (1135)
Q Consensus 873 -----------------------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~ 923 (1135)
+++..+.+|.+.|++++||| +| +||+|+.|++|+|||+.+...+. .+. +
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g 620 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA 620 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS
T ss_pred ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc
Confidence 24678889999999999999 88 99999999999999998877653 343 8
Q ss_pred cCCCeEEEEEc-----CCC---CeEEEEcCCCcEEEEeC---CCCceeceeeeecCCCCCCCCCCceEEE-EC-------
Q 001159 924 HQNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQSPLVGETKVQ-FH------- 984 (1135)
Q Consensus 924 h~~~i~~l~~s-----~d~---~~l~s~~~D~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s------- 984 (1135)
|.+.|++|+|+ ||| ++|++++.|++|++||+ .+++......-.....+. ..|..++ |+
T Consensus 621 h~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~ 697 (902)
T 2oaj_A 621 QSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK---GPIHKIDAFSKETKSSC 697 (902)
T ss_dssp CCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS---CCCCEEEEEETTTCCBC
T ss_pred cccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC---CceEEEEeEecCCCCcc
Confidence 99999999999 886 89999999999999999 666643322111111111 4455555 55
Q ss_pred ---------------CCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEE---E------EeeCCCEEEEEeCC
Q 001159 985 ---------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFCD 1039 (1135)
Q Consensus 985 ---------------~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~---~------~s~d~~~l~~~~~d 1039 (1135)
+++..| ++.+..|+||++ ++++...... |...+.++ . |++++..|++++.|
T Consensus 698 ~a~~~~~~~l~~~~~~~~~~l-~~~~~~ir~~~~~~~k~~~k~~~---~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
T 2oaj_A 698 LATIPKMQNLSKGLCIPGIVL-ITGFDDIRLITLGKSKSTHKGFK---YPLAATGLSYISTVEKNNDRKNLTVIITLEIN 773 (902)
T ss_dssp BCBHHHHHGGGGTCCCCEEEE-EECSSEEEEECTTCCCEEEEECS---SCEEEEEEEEEEEECSSSCEEEEEEEEEEETT
T ss_pred cCCHHHHhccCCCCCCCeEEE-EEeccceEEEeCccccceeeEcc---cceeeeEEEEEEeccccccccCceEEEEEeCC
Confidence 455444 445889999999 7777765522 34555565 5 78999999999999
Q ss_pred CeEEEEECCCceeeeeeCCc
Q 001159 1040 GAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1040 g~I~vwd~~~~~~~~~~~~~ 1059 (1135)
|.|++|++.+++++.++...
T Consensus 774 g~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 774 GHLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp SEEEEEETTTCCEEEEEECS
T ss_pred CcEEEEECcchHHHhhccCC
Confidence 99999999999999887754
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.7e-56 Score=544.89 Aligned_cols=557 Identities=10% Similarity=0.090 Sum_probs=457.5
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCC----CceeeeeEeecccCC-EEEEEEec--CCCeEEEEEEcCCC
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGG-VNDIAFAH--PNKQLCIVTCGDDK 477 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~----~~~~~~~~l~~h~~~-v~~v~~s~--d~~~~~l~s~~~d~ 477 (1135)
..|.+.|.+++|+|+|++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 35889999999999999999998 789999999987 5444 78899999 99999999 999 899999999
Q ss_pred cEEEEEcCCC--------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCceeEecCCCCcEE
Q 001159 478 MIKVWDVVAG--------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCT 545 (1135)
Q Consensus 478 ~i~iwd~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~ 545 (1135)
.|++||+.++ +.+..+..|..+|.+++|+|++ .++++++.+ +.|++|| ..+....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999755 6778888999999999999865 899999988 7888887 5667778889999999
Q ss_pred EEEEcCCCC-EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC--ceeEEEecCC-CCEEEEEeCCCeEEEEECCCCc
Q 001159 546 MMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~i~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .|.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6778764 889999999999999999887642 6999999999 9999999999999999999999
Q ss_pred eEEEE-e---CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCC
Q 001159 622 MLTTV-D---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 622 ~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 697 (1135)
.+..+ . .+ ...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+......
T Consensus 241 ~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~----------------- 299 (615)
T 1pgu_A 241 FLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGN----------------- 299 (615)
T ss_dssp EEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGG-----------------
T ss_pred EeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccC-----------------
Confidence 99888 4 44 3479999999 9999999999999999999887 444444433211000
Q ss_pred CccccccccCCCCCCCCCCCCCccccccccCCCCccccccc-ccccccccccccccCCcCCccceeEeecCCcccccceE
Q 001159 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
......+ +++.. ++++.++.|++|++.... ... .+ ..|...|
T Consensus 300 ----------------------------~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~---~~~--~~--~~~~~~v- 342 (615)
T 1pgu_A 300 ----------------------------QQVGVVA-TGNGRIISLSLDGTLNFYELGHDE---VLK--TI--SGHNKGI- 342 (615)
T ss_dssp ----------------------------CEEEEEE-EETTEEEEEETTSCEEEEETTEEE---EEE--EE--CCCSSCE-
T ss_pred ----------------------------ceeEEEe-CCCCeEEEEECCCCEEEEECCCCc---EEE--EE--eCCCCCE-
Confidence 0000111 24444 444567999999987521 111 22 2377888
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+++| |+ +++++.||.|++|++. .+. ..| ...|.+++| +++..+
T Consensus 343 ~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~~-----~~~-~~~v~~~~~-~~~~~l 386 (615)
T 1pgu_A 343 TALTV-NP---LISGSYDGRIMEWSSS-------------------------SMH-----QDH-SNLIVSLDN-SKAQEY 386 (615)
T ss_dssp EEEET-TT---TEEEETTSCEEETTTT-------------------------EEE-----CCC-CSCEEEEEC-CSTTCC
T ss_pred EEEEe-cC---cEEECCCCeEEEEEch-------------------------hhc-----Ccc-cCceEEEEE-CCCcEE
Confidence 99999 88 8999999999999643 111 126 899999999 667777
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 935 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 935 (1135)
++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.+++.+..+. |...+++++|+
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 455 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS- 455 (615)
T ss_dssp EEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC-
T ss_pred EEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc-
Confidence 7777 9999999987654432 788999999 88888877 88999999999999888887 88999999999
Q ss_pred CCCeEEEEcC-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCceeeccC
Q 001159 936 TLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWS 1012 (1135)
Q Consensus 936 d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~ 1012 (1135)
+++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|++++|++ +.|+.|++||+ +++.+..+.
T Consensus 456 -~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 527 (615)
T 1pgu_A 456 -QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 527 (615)
T ss_dssp -SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred -CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee
Confidence 889999999 9999999999865321 3444554 68999999999999999 57899999999 777766543
Q ss_pred CCCCCCCCEEEEEEee----------CCCEEEEEeCCCeEEEEECCCc-eeeeeeCCceeccccccCCCCccEEEEecCC
Q 001159 1013 PKDALPAPISSAIYSC----------DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1013 ~~~~h~~~i~~~~~s~----------d~~~l~~~~~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1135)
. .|...|++++|+| ++++|++++.||.|++||+.++ +.+..+..|. ..+.+++|+|
T Consensus 528 ~--~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~----------~~v~~l~~s~- 594 (615)
T 1pgu_A 528 A--FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK----------DGVNNLLWET- 594 (615)
T ss_dssp C--CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST----------TCEEEEEEEE-
T ss_pred c--CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCc----------cceEEEEEcC-
Confidence 2 2689999999999 9999999999999999999998 6777666442 4566889999
Q ss_pred CCCEEEEEecCCcEEEEecCC
Q 001159 1082 EPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1082 ~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
++. |++++.||+|++|++..
T Consensus 595 ~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TTE-EEEEETTSCEEEEEEC-
T ss_pred CCC-eEEecCCceEEEEeeec
Confidence 667 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-55 Score=546.88 Aligned_cols=588 Identities=12% Similarity=0.105 Sum_probs=427.4
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+|...|++++|+|++++||+|+.||+|+||+..+.+... . ..|...|.+++|+| ++ +|++++.|++|++||+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLSL 86 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEET
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEEC
Confidence 4799999999999999999999999999999988754332 2 35788999999999 87 8999999999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-----------eEecCCCCcEEEEEEcCCC
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~~~ 553 (1135)
.+++++..+. |...|++++|+|++ .++++|+.||+|++||+++.... .....|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence 9999998886 77899999998865 89999999999999999876643 2235677899999999964
Q ss_pred -CEEEEEecCCCCCCeEEEEECCCCeEEEEeecc-----------------cCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 554 -TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
..+++++. ++.| +||+++++.++.+..| +...|.+++|+|+|++|++++.||.|++|
T Consensus 164 ~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 164 IGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp EEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 57777753 7889 9999999999888766 12379999999999999999999999999
Q ss_pred ECCCCceEEEEeC-----CC-----------CCCCcceEEEc----CCC-CEEEEEECC-----CcEEEEEcCCCchhhh
Q 001159 616 DMDNMNMLTTVDA-----DG-----------GLPASPRLRFN----KEG-SLLAVTTSD-----NGIKILANSDGVRLLR 669 (1135)
Q Consensus 616 d~~~~~~~~~~~~-----~~-----------~~~~v~~~~~~----~~~-~~l~~~~~d-----g~i~iwd~~~~~~~~~ 669 (1135)
|+.+++++..... +. +...|.+++|+ |++ .++++|+.+ +.+.+|+...... +.
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~~ 317 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-YS 317 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-GG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-cc
Confidence 9999988765221 21 23368999995 443 567777665 3788887421100 00
Q ss_pred hccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccc
Q 001159 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1135)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 749 (1135)
.++.+....+
T Consensus 318 ----------------------------------------------------------------------~~s~~~~~~~ 327 (902)
T 2oaj_A 318 ----------------------------------------------------------------------ITSYEGMKNY 327 (902)
T ss_dssp ----------------------------------------------------------------------GCCHHHHHHH
T ss_pred ----------------------------------------------------------------------ccchhhhhhh
Confidence 0000111111
Q ss_pred cccCCcCCccceeEeecCCcccccceEEEEEEec----------CCcceeEecccceeeeEEeccccCCCC-----C---
Q 001159 750 WRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS-----G--- 811 (1135)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~----------dg~~l~~~~~dg~i~iw~~~~~~~~~~-----~--- 811 (1135)
|+-. ...+.+.+ .+...+ ..+.+.+ +...+++++.||.+++|++..+..... .
T Consensus 328 ~~~~-----~~~~~~~~---~~~~~v-~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 328 YANP-----KQMKIFPL---PTNVPI-VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHSC-----SEEEEECC---SSSSCE-EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hcCc-----cceEEEec---CCCCce-EEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 1100 00011110 123445 6666654 334678888899999999854311000 0
Q ss_pred ---ccc-----ccccCeeecCC---CCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEE----
Q 001159 812 ---KAT-----ANVAPQLWQPP---SGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM---- 875 (1135)
Q Consensus 812 ---~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~---- 875 (1135)
... ......+|+.. .+.. ...+.+ | ...+.+++|+||+++||+|+ |++|++||+.++...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 000 00011123211 0111 112333 6 77788899999999999999 999999999887431
Q ss_pred EE--Ee-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---------------------------------
Q 001159 876 TM--FM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--------------------------------- 915 (1135)
Q Consensus 876 ~~--~~-----~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--------------------------------- 915 (1135)
.. +. +|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 11 11 7899999999999 8999999999999999999876
Q ss_pred ------------eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC-CCCCCCCCceEEE
Q 001159 916 ------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 982 (1135)
Q Consensus 916 ------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 982 (1135)
+++..+.+|.+.|++|+||||| +||+++.|++|++||++++..+....+.... +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 2467788999999999999999 9999999999999999887643321223343 666 7899999
Q ss_pred EC-----CCC---cEEEE-EecCeEEEEec----CCceeeccCCCC--CCCCCEEEEE-Ee-------------------
Q 001159 983 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1027 (1135)
Q Consensus 983 ~s-----~dg---~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~--~h~~~i~~~~-~s------------------- 1027 (1135)
|+ ||| ++|++ +.|++|++||+ ++++...+..+. .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 67999999998 555555543321 2357777777 76
Q ss_pred ---eCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEE-EE------ecCCCCCEEEEEecCCcEEE
Q 001159 1028 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV-IA------PHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1028 ---~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~sg~~dg~v~~ 1097 (1135)
+++.+|+++ +..|+||++.+++..+....+. ..+..++ +. |++ ++..|++++.||+|++
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~--------~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~ 778 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYP--------LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRV 778 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSC--------EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEcccc--------eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEE
Confidence 556555554 7799999999998887654331 0111111 23 455 6789999999999999
Q ss_pred EecCCCcccc
Q 001159 1098 VEPSDAELKW 1107 (1135)
Q Consensus 1098 W~~~~~~~~~ 1107 (1135)
|++.+.+..-
T Consensus 779 ~s~p~l~~~~ 788 (902)
T 2oaj_A 779 FTIPDFKEQM 788 (902)
T ss_dssp EETTTCCEEE
T ss_pred EECcchHHHh
Confidence 9999988443
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.5e-48 Score=488.96 Aligned_cols=481 Identities=15% Similarity=0.228 Sum_probs=384.9
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
..+.+. |.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+.. +.+|...|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 345555 899999999999998 788999999999999999876653 66799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h 496 (1135)
|++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987655 6788999999999999999 8999999999999999987 777888999
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcC--CCCEEEEEecCCCCCCeEEEEE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999983 23799999999999999998888777766655 7899999999 9999999875 88999999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE-EEEEEC
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LAVTTS 652 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~ 652 (1135)
..+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEE
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEe
Confidence 999999999999877 899999999999999999999999999999999999887644 7999999999873 244445
Q ss_pred CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCc
Q 001159 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1135)
Q Consensus 653 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1135)
++.+.+|++..+.
T Consensus 292 ~~~~~~~~~~~~~------------------------------------------------------------------- 304 (814)
T 3mkq_A 292 DNGFTVLSLGNDE------------------------------------------------------------------- 304 (814)
T ss_dssp TTEEEEEECSCCS-------------------------------------------------------------------
T ss_pred CCCEEEEEcCCCC-------------------------------------------------------------------
Confidence 6678888865441
Q ss_pred ccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEeccccee-eeEEeccccCCCCC
Q 001159 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSG 811 (1135)
Q Consensus 733 ~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i-~iw~~~~~~~~~~~ 811 (1135)
..+.++|+|+.+++++.+... .++....
T Consensus 305 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------- 333 (814)
T 3mkq_A 305 --------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVI------- 333 (814)
T ss_dssp --------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEEC-------
T ss_pred --------------------------------------------ceeEECCCCCEEEECcccccceeeeeeec-------
Confidence 223344455544444333211 0000000
Q ss_pred cccccccCeeecCCCCcceeccCC-CCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEE
Q 001159 812 KATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 890 (1135)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 890 (1135)
...|+...+........ ...+ ...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|
T Consensus 334 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~ 400 (814)
T 3mkq_A 334 -------RGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVW 400 (814)
T ss_dssp -------CSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEE
T ss_pred -------ccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEE
Confidence 00112222211111000 0114 677899999999999999999999999987654432 356889999
Q ss_pred ecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC---CeEEEEcCCCcEEEEeCCCCceeceeeeec
Q 001159 891 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQA 967 (1135)
Q Consensus 891 sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 967 (1135)
+| ++++||+++.+|.|++|+ .+.+|...|.+++|+||+ .+|++++.|++|++||+.+++.+ ..
T Consensus 401 sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~-----~~ 466 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLV-----RR 466 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEE-----EE
T ss_pred eC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEE-----EE
Confidence 99 899999999999999995 345688889999999998 68999999999999999988743 33
Q ss_pred CCCCCCCCCCceEEEECCCCcEEEEE------ecCeEEEEec
Q 001159 968 PAGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYDS 1003 (1135)
Q Consensus 968 ~~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~v~vwd~ 1003 (1135)
...+. ..++|+|||++|+++ .++.+.+|..
T Consensus 467 ~~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 IDVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ESSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 33332 389999999999997 6666666543
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-45 Score=464.55 Aligned_cols=464 Identities=16% Similarity=0.192 Sum_probs=382.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999986555 6778999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+++. .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999865 79999999999999999987 45567888999999999999 8889998875
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..|.. .|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEE
Confidence 889999999999888888887755899999999 999999999999999999999999999987654 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|+++++++++.||.|++||..++ .....+..
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~---------------------------------------------- 268 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNV---------------------------------------------- 268 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeec----------------------------------------------
Confidence 9999999999999999999998776 22222111
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcce-eEecccceee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSL-LALASNAVHK 798 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l-~~~~~dg~i~ 798 (1135)
+...+ .+++|+|+|..+ ++.+.++.+.
T Consensus 269 ---------------------------------------------------~~~~v-~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 269 ---------------------------------------------------GLERS-WCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp ---------------------------------------------------SSSSE-EEEEECTTCGGGEEEEEETTEEE
T ss_pred ---------------------------------------------------CCCcE-EEEEEccCCCceEEEEEeCCCEE
Confidence 23445 999999999764 6666677788
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CC---eEEE------EE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FN 868 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg---~i~v------wd 868 (1135)
+|++. .....++++|+|+.+++++ +. .+.. |+
T Consensus 297 ~~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (814)
T 3mkq_A 297 VLSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEE 338 (814)
T ss_dssp EEECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCC
T ss_pred EEEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeecccccc
Confidence 88642 1223577889999999876 32 1222 33
Q ss_pred CCCccE----EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEc
Q 001159 869 MMTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 869 ~~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~ 944 (1135)
+..+.. ...+..+...+.+++|+| ++++|++++ |+.+.+|++...... +.+.|.+++|+||++++++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~ 411 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALID 411 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEEC
T ss_pred cccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEe
Confidence 333332 234455677899999999 899999988 899999998654432 346788999999999999999
Q ss_pred CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC---cEEEE-EecCeEEEEec-CCceeeccCCCCCCCC
Q 001159 945 ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ---THLLV-VHESQISVYDS-KLECSRSWSPKDALPA 1019 (1135)
Q Consensus 945 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~ 1019 (1135)
.|+.|++|+.-. ++. ..+..++|+||| ++|++ +.++.|++||+ +++.+..+...
T Consensus 412 ~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~----- 470 (814)
T 3mkq_A 412 ETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN----- 470 (814)
T ss_dssp TTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC-----
T ss_pred CCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC-----
Confidence 999999996332 122 456788999998 45555 78999999999 77777666433
Q ss_pred CEEEEEEeeCCCEEEEE------eCCCeEEEEE
Q 001159 1020 PISSAIYSCDGLLVYAG------FCDGAIGVFD 1046 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~~~------~~dg~I~vwd 1046 (1135)
...++|+|||++|+++ +.++.+.+|.
T Consensus 471 -~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 471 -AKDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp -EEEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred -CCEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 2399999999999999 6665555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-44 Score=413.90 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=263.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|.++|++++|+|+++ ++++|+.||.|+|||+.+++.... +.+|...|.+++|+|++++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 677999999999998 799999999999999999876653 678999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1135)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++.++.+|...|.++.
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999876655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC--------------------CCEEEEEecCCC
Q 001159 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 564 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~~~~ 564 (1135)
++|++ .++++|+.|++|++||+.+......+..|...|.+++|+|+ +.+|++++.
T Consensus 242 ~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 98754 89999999999999999999999999999999999999996 668999875
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 644 (1135)
|+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 88999999999999999999887 899999999999999999999999999999999999987755 79999999999
Q ss_pred CEEEEEECCCcEEEEEc
Q 001159 645 SLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~ 661 (1135)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.3e-39 Score=361.41 Aligned_cols=293 Identities=19% Similarity=0.312 Sum_probs=263.7
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.....++. |.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34566666 999999999999998 789999999999999998876643 567999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|+|++++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987642 233446789999999999999874 8899999999999999999999999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|.+.|.+++|+|++ .++++|+.|++|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 182 ~h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 999999999999855 89999999999999999999999999999999999999999999999985 889999999
Q ss_pred CCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
++++.+..+.... ...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+|.. .|.+++|+|++.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCC
Confidence 9998887775432 22689999999999999999999999999999999999987754 89999999999999999999
Q ss_pred CcEEEEE
Q 001159 654 NGIKILA 660 (1135)
Q Consensus 654 g~i~iwd 660 (1135)
++|+|||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-39 Score=362.97 Aligned_cols=295 Identities=17% Similarity=0.277 Sum_probs=264.4
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
...+++. |.+.|++++|+|+++ +||+|+.||.|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 3455666 999999999999998 789999999999999988776543 4568889999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCc---eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 99999999999999999999875421 123346778999999999999998 8999999999999999999999999
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.+|...|.+++++|..++.+|++|+.||+|++||+++++....+..|...|.+++|+|++++|++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999999877789999999999999999999999999999999999999999999999985 88999999
Q ss_pred CCCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 574 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
+++++.+..+..+. ...+.+++|+|++.++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcC
Confidence 99998887776543 22688999999999999999999999999999999988887754 8999999999999999999
Q ss_pred CCcEEEEE
Q 001159 653 DNGIKILA 660 (1135)
Q Consensus 653 dg~i~iwd 660 (1135)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=359.45 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=264.0
Q ss_pred eeeEEeec-CCCCeeEEEEecC----CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQ----QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~----g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+...+. |.+.|++++|+|+ ++ +|++|+.|++|+||++..++.... ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence 34445555 9999999999985 44 799999999999999976643211 1267899999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
.+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++...
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence 999999999999999999999999999987655 6778999999999999999 89999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+..|...|.+++|+|++ .+|++|+.||.|++||+++++....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 159 ~~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i 232 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI 232 (321)
T ss_dssp EEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred EecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence 999999999999998865 89999999999999999999888899999999999999999999999975 889999
Q ss_pred EECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE
Q 001159 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 651 (1135)
||++++..+..+.+|.. .|.+++|+|++.+|++++.|++|++||+.+++++..+..|.. .|.+++|+|++++|++++
T Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 233 YDVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred EECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEe
Confidence 99999999999999987 899999999999999999999999999999999999987644 799999999999999999
Q ss_pred CCCcEEEEEc
Q 001159 652 SDNGIKILAN 661 (1135)
Q Consensus 652 ~dg~i~iwd~ 661 (1135)
.||+|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.3e-39 Score=351.43 Aligned_cols=292 Identities=17% Similarity=0.308 Sum_probs=256.5
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+..+++. |.+.|++++|+|+|+ +|++|+.||.|+|||+.++..+.. +.+|...|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 3456666 899999999999998 788999999999999998876653 5679999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 495 (1135)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987655 7889999999999999999 8999999999999999987 55678899
Q ss_pred CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-CCCCcEEEEEEcC--CCCEEEEEecCCCCCCeEEEE
Q 001159 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 572 (1135)
|...|.+++|+|.. +..|++|+.|++|++||+........+. .+...+..+.|+| ++.+|++++. |+.|++|
T Consensus 139 h~~~v~~v~~~p~~-~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTTC-TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCCC-CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999853 3799999999999999998877766554 4557889999986 7789999985 8899999
Q ss_pred ECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC--EEEEE
Q 001159 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 650 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~ 650 (1135)
|+++++.+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+.. .+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEe
Confidence 9999999999999988 899999999999999999999999999999999999986644 789999999875 57777
Q ss_pred ECCCcEEEEEcCC
Q 001159 651 TSDNGIKILANSD 663 (1135)
Q Consensus 651 ~~dg~i~iwd~~~ 663 (1135)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 665 577777654
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=353.10 Aligned_cols=294 Identities=15% Similarity=0.242 Sum_probs=260.0
Q ss_pred CeeeeeecCCCCCeeEEEeeccC--CccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKE--SIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
+.....+.+|.+.|++++|+|+. ++.+|++|+.|++|++||+..... ...+.+|...|.+++|++++..+++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 33455677999999999998852 457999999999999999987654 3367889999999999999999999985
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .|.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECC
Confidence 88999999999999999988876 788999999999999999999999999999999888876644 799999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++++|++++.||.|++||+.++. .+..
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~-~~~~---------------------------------------------------- 201 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGK-LLHT---------------------------------------------------- 201 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-EEEE----------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCc-EEEE----------------------------------------------------
Confidence 99999999999999999987651 0000
Q ss_pred cccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEe
Q 001159 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h 881 (1135)
+.+ | ...|.+++|+|++++|++++ |++|++||+.++++...+.+|
T Consensus 202 -------------------------------~~~--h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (321)
T 3ow8_A 202 -------------------------------LEG--H-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247 (321)
T ss_dssp -------------------------------ECC--C-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC
T ss_pred -------------------------------Ecc--c-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC
Confidence 001 4 67788999999999999999 899999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
...|.+++|+| ++.+|++|+.|++|++||+.+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 248 ~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 248 ASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999963
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-38 Score=351.15 Aligned_cols=301 Identities=20% Similarity=0.268 Sum_probs=259.4
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
..+..++. |.+.|++++|+|++..+|++|+.|++|++|++........ .+...+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34566777 9999999999998755899999999999999875432110 11123678999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ +.++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987655 7889999999999999999 89999999999999985 567788899
Q ss_pred CCCCeeEEEeeccC----CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 496 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 496 h~~~v~~i~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
|...|.++.+.|.. ++..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998853 3458999999999999999998888889999999999999999999999985 889999
Q ss_pred EECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CCCCcceEEEcCCCC
Q 001159 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 645 (1135)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 645 (1135)
||+.+++.+..+..+. .|.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999988653 79999999999999888754 59999999888777765331 234678999999999
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001159 646 LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|++|+.||.|++||+.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-38 Score=366.89 Aligned_cols=247 Identities=21% Similarity=0.353 Sum_probs=232.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|..+|++++|+|++++|++|+.||+|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++++.++.+|...|.+++|+|++ .+|++|+.|++|++||++++.....+..|...|.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999999865 89999999999999999999999999999999999999999999999985
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC--------------------CCEEEEEeCCCeEEEEECCCCceE
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.+++++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 88999999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..+.+|.. .|.+++|+|++++|++++.||+|++||+.++
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 99987754 7999999999999999999999999998766
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-39 Score=367.74 Aligned_cols=306 Identities=17% Similarity=0.285 Sum_probs=265.0
Q ss_pred CCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.... +.+|...|
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v 111 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWV 111 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCE
Confidence 334456777787 999999999999998 689999999999999998876653 56799999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 412 ~~v~~spd~~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
.+++|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.++
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCC
Confidence 9999999999999999999999999975321 1222357799999999999998654 6999999999999999999
Q ss_pred eeeeee-----cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 488 RKQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 488 ~~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
+.+..+ .+|...|.+++|++. ++.++++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred cEEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 988877 679999999999864 348999999999999999984 4667788899999999999999999999985
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccC------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC--CCCCC
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLP 633 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~ 633 (1135)
|+.|++||+++++.+..+..+.. ..|.+++|+|+|+++++|+.||.|++||+..++.+..+.. ..+..
T Consensus 270 ----D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 270 ----DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp ----SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred ----CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 88999999999999988876533 1488999999999999999999999999999998887732 23455
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|.+++|+|+|++|++|+.|++|++|++...
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999999999999999999999998765
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.3e-38 Score=350.01 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=228.0
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.++..+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887655 6778999999999999999 899999999999999
Q ss_pred cCCC----eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 484 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
+.++ +....+.+|.+.|.++.|+++ ..+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 355678899999999999875 359999999999999999999888999999999999999999999999
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. |+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||+|++||+++++.+..+..+.....|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 85 88999999999999999999887 89999999999999999999999999999998888876555445799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++|+.|+.|++||..++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998766
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=350.92 Aligned_cols=303 Identities=17% Similarity=0.242 Sum_probs=250.5
Q ss_pred eeeEEeec-CCC-CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 337 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 337 ~~~~~~~~-h~~-~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
.+++.++. |.+ .|++++|+|+|+ +||+|+.||.|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 45677776 776 999999999998 789999999999999987653211 01136899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eeee
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 491 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~ 491 (1135)
+|+|+|++||+|+.|++|++||+..+.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23447889999999999999999 8999999999999999876 3466
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+.+|...|.+++|+|++++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999999865 8999999999999999987653 4577889999999999999999999985 8899
Q ss_pred EEEECCC---------------CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc----eEEEE---e
Q 001159 570 VEWNESE---------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTV---D 627 (1135)
Q Consensus 570 ~~wd~~~---------------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~---~ 627 (1135)
++||... ...+..+.+.+...|.+++|++++..+++++.|+.|++|+..... +...+ .
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 134556666444589999999999999999999999999987542 11111 1
Q ss_pred CCCCCCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCCc
Q 001159 628 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 628 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
...+...|++++|+|++ .+|++++.||+|++|+..+++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 22345589999999987 599999999999999998874
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-38 Score=356.40 Aligned_cols=293 Identities=12% Similarity=0.126 Sum_probs=240.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEec------cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 344 NQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 344 ~h~~~V~~v~~sp~g~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.|...|++++|||||+ +||+|+. ||.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 3888999999999998 7888887 7889999988776543211 1134688999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceee-eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
|++++ ++++.||+|+|||+.+++.... .....+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|
T Consensus 104 ~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 99865 4678899999999998765432 224558999999999999999 8999999999999999999999999999
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe--cCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1135)
...|.+++|+++++ .++++++.||+|++||+++.+....+ ..+...+.+++|+|++ .+|++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999998754 58899999999999999988776544 3456689999999985 56667764 88899999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEE
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTT 651 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 651 (1135)
+++++.+..+.+|.. .|.+++|+|++ ++|++++.|++|+|||+++++.+..+ .| ...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H--~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH--RDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC--SSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC--CCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 33 45899999998 899999999
Q ss_pred CCCcEEEEEcCCC
Q 001159 652 SDNGIKILANSDG 664 (1135)
Q Consensus 652 ~dg~i~iwd~~~~ 664 (1135)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=344.38 Aligned_cols=297 Identities=13% Similarity=0.117 Sum_probs=238.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccc-cchhhhhccCCCcceEEEEEcCCCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAAS-MPLQNALLNDAAISVNRCVWGPDGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~v~~spd~~~l 423 (1135)
|...|.+++|||||+ +|++++ |+++++||..... |+..... ..........|...|.+++|+|++ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 456799999999998 677776 7788888742210 0000000 000000122466789999999985 68
Q ss_pred EEEeCCCeEEEEEeCCCCceeee-eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1135)
++|+.||+|+|||+.+++.+... ..+.+|...|++++|+|+++ +|++|+.|++|++||+.+++++.++.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEECCCCeE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 579 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1135)
++|++++. .++++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. |+.|++||+++++.
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99998754 588999999999999999988877654 445679999999965 56777764 88999999999999
Q ss_pred EEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEE
Q 001159 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 657 (1135)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +.+| ...|++++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999988 89999999998 578999999999999999887654 4555 45899999999886 577999999999
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-36 Score=335.93 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=258.2
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.+..++. |.+.|++++|+|+|+ +|++|+.||.|+||++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 4455565 999999999999998 789999999999999988776543 6789999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|+.|++||+++++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 6789999999999999999 8999999999999999999999999999
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
..+|.+++|+|++ .++++++.||.|++||+.+.+....+. .+...+..++|+|++++|++++. ++.|++||++
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998855 899999999999999999888776554 45568999999999999999875 8899999999
Q ss_pred CCeEEEEeecccCCc--eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE--
Q 001159 576 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 651 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~--v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 651 (1135)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEcc
Confidence 999999998886522 23333446788999999999999999999999999987754 799999999999999997
Q ss_pred CCCcEEEEEcC
Q 001159 652 SDNGIKILANS 662 (1135)
Q Consensus 652 ~dg~i~iwd~~ 662 (1135)
.|++|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-37 Score=338.07 Aligned_cols=248 Identities=18% Similarity=0.298 Sum_probs=226.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.+++|+|++++|++|+.||.|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999886555 7788999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEEEEcC-CCCEEEEEec
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 561 (1135)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999865 8999999999999999988744 456788999999999999 6788999985
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
|+.|++||++++.....+..++...+..+.|+| ++.+|++++.|++|++||+.+++++..+.+|.. .|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEE
Confidence 889999999988877777665555788899986 678999999999999999999999999998755 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++++.||+|++||..++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999877
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=358.32 Aligned_cols=304 Identities=14% Similarity=0.228 Sum_probs=251.0
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEc----CCccccccCCceeecccccccchh-hhhccCCCcceEEE
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQ-NALLNDAAISVNRC 414 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v 414 (1135)
+....|.+.|++++|+|+|+.+||+|+.||.|+||++ .+++.+.... ....+. .++. .....+|...|.++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT-IIAELR---HPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEE-EEEEEE---CCCCCC------CBCEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccc-cccccc---ccccccccccCCCCceEEE
Confidence 4444477899999999999846889999999999999 8776310000 000000 0000 00123478899999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
+|+|++++|++|+.||.|++|| .++..+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFE 188 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEee
Confidence 9999999999999999999999 4444443 6788999999999999999 89999999999999999999999998
Q ss_pred CCCCC---------------eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 495 GHEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 495 ~h~~~---------------v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
.+... +.+++|+++ ..+++++.||.|++||+.+.+....+..|...|.+++|+|++++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp CC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 88777 999999875 479999999999999999998888888999999999999999999999
Q ss_pred ecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
+. ++.|++||+.+++.+..+..|.. .|.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.. .|.+++
T Consensus 266 ~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~ 337 (425)
T 1r5m_A 266 SD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGR 337 (425)
T ss_dssp ET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEE
T ss_pred cC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEE
Confidence 75 88999999999999999988877 89999999999 999999999999999999999999887644 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|+|++++|++++.||.|++||+.++
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999999765
No 29
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-37 Score=355.17 Aligned_cols=341 Identities=13% Similarity=0.168 Sum_probs=283.2
Q ss_pred eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc----CCCe------eeeeecC-----
Q 001159 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG----- 495 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~----~~~~------~~~~~~~----- 495 (1135)
.+.+|++....... ....|.+.|.+++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp --------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 35678876543322 34457799999999999985 6899999999999999 8887 4555543
Q ss_pred -----CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 496 -----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 496 -----h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
|...|.+++|+|++ .+|++++.||.|++|| .+++....+..|...|.+++|+|++++|++++. ++.|+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 174 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTI 174 (425)
T ss_dssp ------CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEE
T ss_pred ccccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEE
Confidence 68899999999854 8999999999999999 566777788889999999999999999999875 88999
Q ss_pred EEECCCCeEEEEeecccCCc---------------eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 571 EWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~---------------v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+||+.+++.+..+..+.. . +.+++|+++ ..+++++.+|.|++||+.+++.+..+..+.. .|
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~i 250 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHG--PI 250 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSS--CE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCC--ce
Confidence 999999999998887765 4 888999987 4688999999999999999998888876644 79
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 715 (1135)
.+++|+|++++|++++.|+.|++||+.++. ..
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~----------------------------------------------- 282 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQ----------------------------------------------- 282 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBS-CS-----------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc-cc-----------------------------------------------
Confidence 999999999999999999999999976541 00
Q ss_pred CCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccc
Q 001159 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNA 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg 795 (1135)
..
T Consensus 283 -------------------------------------------------------------~~----------------- 284 (425)
T 1r5m_A 283 -------------------------------------------------------------NC----------------- 284 (425)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------eE-----------------
Confidence 00
Q ss_pred eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccE
Q 001159 796 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 874 (1135)
Q Consensus 796 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~ 874 (1135)
+.. | ...+.+++|+|++ ++++++ |+.|++||+.+++.
T Consensus 285 --------------------------------------~~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 285 --------------------------------------FYG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp --------------------------------------ECC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE
T ss_pred --------------------------------------ecC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 000 4 6788899999999 888887 89999999999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--------------------eeEEecCcCC--CeEEEE
Q 001159 875 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLA 932 (1135)
Q Consensus 875 ~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~i~~l~ 932 (1135)
+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++
T Consensus 323 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 401 (425)
T 1r5m_A 323 LALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401 (425)
T ss_dssp EEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred eEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence 999999999999999999 89999999999999999999888 8899999977 999999
Q ss_pred EcCCCCeEEEEcCCCcEEEEeCC
Q 001159 933 FSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 933 ~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
|+|++++|++++.||.|++|+++
T Consensus 402 ~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSSCCEEEECC
T ss_pred ccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999986
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-37 Score=350.33 Aligned_cols=320 Identities=15% Similarity=0.187 Sum_probs=227.7
Q ss_pred ccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccc
Q 001159 735 DVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 814 (1135)
Q Consensus 735 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 814 (1135)
+..++....+.....|+++... ...|...| .+++|+|||++|++++.|. +++||-
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~-----------p~~H~~~V-~~v~fSpDG~~las~s~d~-~~~wd~------------ 70 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTA-----------PACMEVQI-GAVRYRRDGALLLAASSLS-SRTWGG------------ 70 (357)
T ss_dssp -----------------------------------CCCSEE-EEEEECSSSCEEEEEECSS-SSSCCE------------
T ss_pred cceEEecCCCccccccCCCCCC-----------cccccCCE-EEEEECCCCCEEEEEcCCC-CccccC------------
Confidence 3344445555777888876311 12378888 9999999999999988753 345542
Q ss_pred ccccCeeecCCCCcceecc-CCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEE----EEeCCCCCeEEEE
Q 001159 815 ANVAPQLWQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLA 889 (1135)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~-~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~h~~~v~~l~ 889 (1135)
.+.+|+..++...... .....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++
T Consensus 71 ---~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 71 ---SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp ---EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred ---eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 1344454444322111 111126 888999999999988776669999999999876543 3447999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCC-eEEEEcCCCcEEEEeCCCCceeceeeeecC
Q 001159 890 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAP 968 (1135)
Q Consensus 890 ~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 968 (1135)
|+| ++++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|++++. ++++++.|++|++||+.+++...... .
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~ 222 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---F 222 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---C
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---e
Confidence 999 899999999999999999999999999999999999999999985 78999999999999999877443221 1
Q ss_pred CCCCCCCCCceEEEECCCC-cEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCC-CEEEEEeCCCeEEE
Q 001159 969 AGRQSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGV 1044 (1135)
Q Consensus 969 ~~~~~~~~~v~~~~~s~dg-~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~~~~~dg~I~v 1044 (1135)
..+. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++|++|+.||+|+|
T Consensus 223 ~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 223 CASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp TTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred cccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 1222 568999999985 56777 57899999999 66666555 3458899999999997 57999999999999
Q ss_pred EECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1045 FDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
||+++++.+..+. | ...+.+++|+|.++.+|+||+.||+|++|++.+..
T Consensus 297 wd~~~~~~~~~~~-H----------~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFSEVFRDLS-H----------RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSCEEEEECC-C----------SSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCCcEeEECC-C----------CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999998876542 2 24566899999888999999999999999997644
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=348.31 Aligned_cols=310 Identities=15% Similarity=0.245 Sum_probs=253.0
Q ss_pred eeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 337 KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 337 ~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
.++...+.|.+.|++++|||||+ +||+|+ ++.++||++.+++.+.......-... ............+...|.+++|
T Consensus 55 ~~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~ 131 (393)
T 1erj_A 55 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCF 131 (393)
T ss_dssp EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEE
T ss_pred ceeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccccc-ccccccccccCCCceeEEEEEE
Confidence 34566677999999999999998 678876 78999999998876542100000000 0000000111234456999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC
Q 001159 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 417 spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 496 (1135)
+|+|++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||++++++...+. +
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~ 205 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-I 205 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-c
Confidence 9999999999999999999999876544 7889999999999999999 89999999999999999999888876 6
Q ss_pred CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
...+.+++|+|. ++.++++|+.||.|++||++++.....+ ..|...|.+++|+|++++|++++. |+.|
T Consensus 206 ~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v 280 (393)
T 1erj_A 206 EDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSV 280 (393)
T ss_dssp SSCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEE
T ss_pred CCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEE
Confidence 678999999884 3489999999999999999988776655 567889999999999999999985 8899
Q ss_pred EEEECCCC------------eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcce
Q 001159 570 VEWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1135)
Q Consensus 570 ~~wd~~~~------------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1135)
++||+++. .....+.+|.. .|.+++|++++.+|++++.|+.|++||+.+++++..+.+|.. .|.+
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~ 357 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVIS 357 (393)
T ss_dssp EEEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEE
Confidence 99999753 34567778877 899999999999999999999999999999999999987755 7999
Q ss_pred EEEcC------CCCEEEEEECCCcEEEEEcCC
Q 001159 638 LRFNK------EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 638 ~~~~~------~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++|++ ++.+|++|+.||+|+||++..
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99876 688999999999999999854
No 32
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.2e-37 Score=342.99 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=226.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|...|++++|+|++++||+|+.||+|++||..++.... .+..|...|.+++|+|++. +|++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999998876554 6678999999999999999 899999999999999
Q ss_pred cCCC------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC--CCCE
Q 001159 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 555 (1135)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~ 555 (1135)
+... .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 3445677899999999998865 7999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCc
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
|++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||++.++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999985 88999999999999999999887 8999999999999999999999999999999888877765554578
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+++|+|++.+|++|+.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999999776
No 33
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=337.64 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=234.4
Q ss_pred eeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhc-c-CCCcceEE
Q 001159 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL-N-DAAISVNR 413 (1135)
Q Consensus 337 ~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~ 413 (1135)
.+++.++. |.++|++++|+|+ +||+|+.||.|+|||+.++..... ..+ . +|...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEE
Confidence 34566777 9999999999998 689999999999999987532110 012 2 39999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCC----ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--- 486 (1135)
++|+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred -CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC--CceeEecCCCCcEEEEEEcCC--CCEEEEEec
Q 001159 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGT 561 (1135)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~ 561 (1135)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... +....+.+|...|.+++|+|+ +.+|++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 25677889999999999999865 89999999999999998766 456678899999999999998 678898875
Q ss_pred CCCCCCeEEEEECCCC--------eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCCCC
Q 001159 562 SKEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (1135)
|+.|++||+.++ .....+.+.+...|.+++|++++ +|++++.||.|++|+..+++. .... ...+
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 889999998754 34555655233389999999664 899999999999999987742 3222 1223
Q ss_pred CC-CcceEEEcC--CCCEEEEEECCCcEEEEEcCC
Q 001159 632 LP-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~-~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.. .|.+++|+| ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 689999999 789999999999999999864
No 34
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-36 Score=333.59 Aligned_cols=247 Identities=19% Similarity=0.286 Sum_probs=221.4
Q ss_pred ccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEeCCCCc--eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~-~~las~~~dg~i~iwd~~~~~~--~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 77999999999999965 8999999999999999975432 123447889999999999999999 899999999999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCC------CC
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD------GT 554 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~------~~ 554 (1135)
+||+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++ ......+..|...|.+++|+|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998865 899999999999999996 4566778889999999999985 44
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888875 88999999999999999999987 8999999999999999999999999999999999888754 36
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
|.+++|+|++.++++++.+ .+++|++...
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 9999999999999988765 6999998765
No 35
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-37 Score=353.22 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=222.3
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999886554 7789999999999999999 899999999999999
Q ss_pred cCCCe-------eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-----cCCCCcEEEEEEcC
Q 001159 484 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~ 551 (1135)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.+++....+ ..|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999998643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 552 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 552 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
+++++++++. |+.|++||++ .+..+..+.+|.. .|.+++|+|++++|++++.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 8889999985 8899999998 5678888999887 8999999999999999999999999999999998888654
Q ss_pred CC-----CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 630 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 630 ~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.. ...|.+++|+|+|++|++|+.||.|++||..++
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 32 224899999999999999999999999998766
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-36 Score=338.35 Aligned_cols=300 Identities=16% Similarity=0.283 Sum_probs=243.9
Q ss_pred eeEEeec-CCCCeeEEEE-----ec-CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcc
Q 001159 338 TVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~-----sp-~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1135)
.+..++. |.+.|++++| +| +++ +||+|+.|++|+|||+.+++.... ...+...+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCc
Confidence 4556666 9999999999 77 887 799999999999999976543210 00111236789999
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 490 (1135)
|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.... .
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~-~ 152 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGEC-K 152 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCE-E
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCc-e
Confidence 9999999999999999999999999999987655 7789999999999999999 89999999999999987443 3
Q ss_pred eee---cCCCCCeeEEEeeccCC--------ccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEE
Q 001159 491 YTF---EGHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1135)
Q Consensus 491 ~~~---~~h~~~v~~i~~~~~~~--------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 559 (1135)
..+ .+|...|.+++|+|... +.++++++.||+|++||. .......+..|...|.+++|+|+|++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 333 37899999999998642 268999999999999994 445566788899999999999999999999
Q ss_pred ecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE--EEeCC-------
Q 001159 560 GTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------- 629 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------- 629 (1135)
+. |+.|++||+. .......+.. .. .|.+++|+|++.+++++ .|+.|++|++.+++... .+...
T Consensus 232 s~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 304 (343)
T 2xzm_R 232 GK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEG 304 (343)
T ss_dssp ET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred cC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence 85 8899999994 4444444432 22 69999999999877655 57889999998876544 33311
Q ss_pred --CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 630 --GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 630 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33457899999999999999999999999998765
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=360.42 Aligned_cols=292 Identities=14% Similarity=0.262 Sum_probs=249.6
Q ss_pred CCCeeEEEEecCCCeEEEEE----------eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
...|.+++|+|+|+.++|+| +.||.|+|||+.++..... . ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34789999999997789999 8899999999998763210 0 0235889999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecC-CCeEEEEEEcCCCcEEEEEcCCCe-----
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR----- 488 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~----- 488 (1135)
|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1133367889999999999998 66 89999999999999999886
Q ss_pred -eee---eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC------CCcEEEEEEcCCC-CEEE
Q 001159 489 -KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TRLF 557 (1135)
Q Consensus 489 -~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~-~~l~ 557 (1135)
... .+.+|...|.+++|+|++ +.++++++.||.|++||+++.+....+..+ ...|.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 346799999999999863 379999999999999999998888877776 6789999999998 5777
Q ss_pred EEecCCCCCC---eEEEEECCCC-eEEEEee-cccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 558 SCGTSKEGES---HLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 558 ~~~~~~~~~~---~i~~wd~~~~-~~~~~~~-~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
+++. ++ .|++||++++ ..+..+. +|.. .|.+++|+| ++++|++++.||.|++||+.+++.+..+..|..
T Consensus 232 ~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 232 TATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp EEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred EEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence 7764 44 8999999986 6677777 7776 899999999 899999999999999999999999999987754
Q ss_pred CCCcceEEEcCCC-CEEEEEECCCcEEEEEcCCC
Q 001159 632 LPASPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|.+++|+|++ .+|++++.|+.|++|++.+.
T Consensus 307 --~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 307 --WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp --CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred --ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 79999999998 89999999999999999876
No 38
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=339.45 Aligned_cols=294 Identities=13% Similarity=0.147 Sum_probs=225.7
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCc-ceeccCCCCCCCCCceEEEEe
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT-LMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
+...| .+++|+|||++|++++ |+++++|+.... +|+..... ..........| ...|.+++|
T Consensus 29 ~~~~v-~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQL-EAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQT-EAGVADLTW 90 (344)
T ss_dssp CCSEE-EEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEE-SSCEEEEEE
T ss_pred ccCCE-EEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeecc-CCCEEEEEE
Confidence 44567 9999999999776555 888999974321 11111000 00000000113 678999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCccEEEE----EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTFKVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~~~~~~----~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
+||+. +++|+ ||+|+|||+.+++.+.. +.+|.+.|++++|+| ++++|++|+.|++|++||+.+++++..+.+|
T Consensus 91 s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 168 (344)
T 4gqb_B 91 VGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168 (344)
T ss_dssp ETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred eCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence 99965 55666 99999999998876544 458999999999999 8999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCC-eEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-cEEEE-EecCeEEEE
Q 001159 925 QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLV-VHESQISVY 1001 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~-~~d~~v~vw 1001 (1135)
.+.|++++|++++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|++ ++|++ +.|+.|++|
T Consensus 169 ~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEE
Confidence 99999999999985 789999999999999998875432211 1111 457899999965 56777 478999999
Q ss_pred ec-CCceeeccCCCCCCCCCEEEEEEeeCC-CEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1002 DS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1002 d~-~~~~~~~~~~~~~h~~~i~~~~~s~d~-~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
|+ +++++..+ .+|...|++++|+||+ ++|++|+.||+|+|||+.+++++. +..| ...+.+++|+
T Consensus 243 d~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H----------~~~V~~v~~s 308 (344)
T 4gqb_B 243 DTKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH----------RDFVRDATWS 308 (344)
T ss_dssp ESCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC----------SSCEEEEEEC
T ss_pred ECCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC----------CCCEEEEEEe
Confidence 99 67766665 3568999999999998 579999999999999999998654 3333 2456789999
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1080 PSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1080 ~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
|++..+|+||+.||+|++|++.+..
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9666788899999999999997643
No 39
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.7e-35 Score=380.16 Aligned_cols=520 Identities=11% Similarity=0.050 Sum_probs=378.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...+.+++|||+ +++ ..+ ++.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~ia-f~~-~~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RII-FVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EEE-EEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EEE-EEE-CCcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 444 444 3799999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEeCCCCceeeeeEeecccCCE-------EEEEEecCCCeEEEEEEcCC------CcEEEEEcC
Q 001159 425 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1135)
Q Consensus 425 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~v~~s~d~~~~~l~s~~~d------~~i~iwd~~ 485 (1135)
+++.+ ..|++||+.+++ .+ .+..|...+ .+++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 379999998864 22 567888888 9999999998 77777754 468888888
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEc------------CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 553 (1135)
+++.. .+..+ ....++|+| | ++++++. +...++|..........+..|...+.++.|+++
T Consensus 143 ~g~~~-~l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77754 33333 234667887 4 7888753 345677765544555666888899999999988
Q ss_pred CEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC--
Q 001159 554 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 630 (1135)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 630 (1135)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|||+.++++ .++.|++|++...+ +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 255666776542 44445555554 35667999999998887 48999999995443 44444321
Q ss_pred -------CCCCcceEEEc-CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 631 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 631 -------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+...+.+++|+ |||+.|++++ ++.+.+|+..++. ... +..
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~~----------------------------- 334 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VPE----------------------------- 334 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CSC-----------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-ccC-----------------------------
Confidence 11258899999 9999999888 7799999886652 110 100
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccccc-ceEEEEEE
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVVRLIY 781 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 781 (1135)
+.. .+ ..++|
T Consensus 335 --------------------------------------------------------------------~~~~~~-~~~~~ 345 (1045)
T 1k32_A 335 --------------------------------------------------------------------PLRIRY-VRRGG 345 (1045)
T ss_dssp --------------------------------------------------------------------CSCEEE-EEECS
T ss_pred --------------------------------------------------------------------CCcceE-EeeeE
Confidence 122 34 78889
Q ss_pred ecCCcceeEecccceee-eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe
Q 001159 782 TNSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 860 (1135)
Q Consensus 782 s~dg~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~ 860 (1135)
+ ||+.|+.++.++.+. +|++. ++.... +.+ | ...+..++|||||++|++++
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEE
T ss_pred c-CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEEC
Confidence 9 999888887776666 66543 222222 112 5 78899999999999999998
Q ss_pred -CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC----------cEEEEEcccceeeEEecCcCCCeE
Q 001159 861 -GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRIT 929 (1135)
Q Consensus 861 -dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~i~ 929 (1135)
++.|++||+.+++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDY 475 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEE
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccC
Confidence 78999999999998888888999999999999 899998887654 89999999888 677888989999
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceece-----e---------------------------------eeecCCCC
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS-----R---------------------------------FIQAPAGR 971 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~-----~---------------------------------~~~~~~~~ 971 (1135)
+++|+|||++|++++.++...+|+......... . .+.....+
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~ 555 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 555 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC
T ss_pred CceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC
Confidence 999999999999999888888887653322000 0 00001111
Q ss_pred CCCCCCceEEEECCCCcEEEE------------E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 972 QSPLVGETKVQFHNDQTHLLV------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 972 ~~~~~~v~~~~~s~dg~~l~~------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
...+..++|+|||+++++ + ....|.+||+.......+. ..+.+++|||||++|++++
T Consensus 556 ---~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 556 ---PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp ---CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEE
T ss_pred ---CCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEc
Confidence 145778999999998875 1 2456888888433333332 4578999999999999987
Q ss_pred CCCeEEEEECCCce
Q 001159 1038 CDGAIGVFDAETLR 1051 (1135)
Q Consensus 1038 ~dg~I~vwd~~~~~ 1051 (1135)
.+ .|++||+.+++
T Consensus 627 ~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 627 DD-GKIYTFPLEKP 639 (1045)
T ss_dssp TT-SCEEEEESSCT
T ss_pred CC-cEEEEeCccCc
Confidence 66 89999999887
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=335.67 Aligned_cols=316 Identities=15% Similarity=0.197 Sum_probs=242.7
Q ss_pred eeeeEeecccC-CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee---eecCCCCCeeEEEeeccCCccEEEEEEc
Q 001159 444 RQHLEIDAHVG-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---TFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1135)
Q Consensus 444 ~~~~~l~~h~~-~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~s~ 519 (1135)
.....+.+|.. .|++++|+|+|+ +|++|+.|++|+|||+.++.... ...+|...|.+++|+|++ .+|++|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~--~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSS--CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEET
T ss_pred EEeeeecCCCCCcEEEEEECCCCC--EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEEC
Confidence 34447789988 999999999999 89999999999999998886432 236899999999999855 89999999
Q ss_pred CCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe---EEEEeecccCCceeEE
Q 001159 520 DGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 520 dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~i 594 (1135)
|++|++||+.... ....+.+|...|.+++|+|++++|++++. |+.|++||+.++. .+..+.+|.. .|.++
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~ 156 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHV 156 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEEEEEEECCCCS-CEEEE
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeEEEEEecCcCC-CeEEE
Confidence 9999999988764 35678889999999999999999999985 8899999998763 4567777777 89999
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCCceE--EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcc
Q 001159 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 672 (1135)
+|+|++++|++++.|+.|++||..+++.. ..+..| ...|.+++|+|++++|++++.|++|++|+......
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~------ 228 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN------ 228 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC------
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC------
Confidence 99999999999999999999999887644 455555 45899999999999999999999999999643310
Q ss_pred ccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccccccccccc
Q 001159 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1135)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~ 752 (1135)
...+.
T Consensus 229 --~~~~~------------------------------------------------------------------------- 233 (345)
T 3fm0_A 229 --EQGVA------------------------------------------------------------------------- 233 (345)
T ss_dssp --TTCCC-------------------------------------------------------------------------
T ss_pred --Cccce-------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceec
Q 001159 753 PDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 832 (1135)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
.....+....+...
T Consensus 234 -------------------------~~~~~~~~~~~~~~----------------------------------------- 247 (345)
T 3fm0_A 234 -------------------------CSGSDPSWKCICTL----------------------------------------- 247 (345)
T ss_dssp -------------------------CC---CEEEEEEEE-----------------------------------------
T ss_pred -------------------------eeccCCccceeEEe-----------------------------------------
Confidence 00000000000000
Q ss_pred cCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc---------EEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 001159 833 DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK---------VMTMFMSPPPAATFLAFHPQDNNIIAIGM 902 (1135)
Q Consensus 833 ~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~---------~~~~~~~h~~~v~~l~~sp~~~~~lasg~ 902 (1135)
. ..| ...|.+++|+|++..|++++ |+.|++|+..... ......+|...|++++|+|++..+||+|+
T Consensus 248 -~--~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 248 -S--GFH-SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp -C--SSC-SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred -c--CCC-CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 0 014 67788888888888888887 8888888876542 12233579999999999994446999999
Q ss_pred CCCcEEEEEcccceeeEEe
Q 001159 903 EDSSVQIYNVRVDEVKTKL 921 (1135)
Q Consensus 903 ~dg~v~iwd~~~~~~~~~l 921 (1135)
.||+|++|++.+++....+
T Consensus 324 ~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 324 DDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTSCEEEEEECC-------
T ss_pred CCCcEEEEEecCCCCcccc
Confidence 9999999999988765544
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-35 Score=332.42 Aligned_cols=305 Identities=21% Similarity=0.289 Sum_probs=261.8
Q ss_pred cceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEE
Q 001159 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1135)
Q Consensus 335 ~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 413 (1135)
...++..+|. |.+.|++++|+|++..+||||+.||+|+|||+.+++.... .+...+.+|...|.+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~ 91 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSD 91 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEE
Confidence 4456677888 9999999999998544899999999999999987654321 112236789999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-ee
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YT 492 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~ 492 (1135)
++|+|+|++|++++.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... ..
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEEC
T ss_pred EEECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEE
Confidence 9999999999999999999999999875444 5567888999999999999 7999999999999998766543 45
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEE
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1135)
+.+|...+..++|++.....++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++|
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iw 242 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLW 242 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEE
Confidence 678999999999998877788999999999999999999998999999999999999999999999985 8899999
Q ss_pred ECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-------CCCCCcceEEEcCCCC
Q 001159 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-------GGLPASPRLRFNKEGS 645 (1135)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~ 645 (1135)
|+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|+++
T Consensus 243 d~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 243 DLNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp ETTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred EeccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 999999999888764 699999999875 556667999999999998877766532 3455799999999999
Q ss_pred EEEEEECCCcEEEEEcCCCc
Q 001159 646 LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~ 665 (1135)
+|++|+.||.|+|||+.+|.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999883
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=359.61 Aligned_cols=338 Identities=12% Similarity=0.134 Sum_probs=270.3
Q ss_pred CCcceEEEEEcCCCC-eEEEE----------eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC
Q 001159 407 AAISVNRCVWGPDGL-MLGVA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 407 h~~~V~~v~~spd~~-~las~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
+...|.+++|+|+|+ +||+| +.|+.|++||+.++........+ .|...|.+++|+|+++ +|++|+.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEcc
Confidence 345688999999997 99999 88999999999987543222233 5889999999999999 8999999
Q ss_pred CCcEEEEEcCC----CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC------ceeE---ecCCCC
Q 001159 476 DKMIKVWDVVA----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVD---YDAPGN 542 (1135)
Q Consensus 476 d~~i~iwd~~~----~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~---~~~~~~ 542 (1135)
|+.|++||+.+ .+.+..+.+|...|.+++|+|++ +.+|++++.||.|++||+.+.+ .... ...|..
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 99999999987 45788899999999999999862 3799999999999999998876 3332 355677
Q ss_pred cEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 543 WCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 543 ~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
.|.+++|+|+ +.++++++. ++.|++||+++++.+..+..+...
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~-------------------------------- 210 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN-------------------------------- 210 (416)
T ss_dssp CCCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS--------------------------------
T ss_pred CeeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc--------------------------------
Confidence 8888888887 566777653 667888887777766665544320
Q ss_pred eEEEEeCCCCCCCcceEEEcCCC-CEEEEEECCC---cEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCC
Q 001159 622 MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDN---GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 697 (1135)
. .+...|.+++|+|++ .++++++.|+ .|++||+.++......
T Consensus 211 -----~--~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~--------------------------- 256 (416)
T 2pm9_A 211 -----S--GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT--------------------------- 256 (416)
T ss_dssp -----S--CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---------------------------
T ss_pred -----c--ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---------------------------
Confidence 1 113468889999986 6888888888 8999988654100000
Q ss_pred CccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEE
Q 001159 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVV 777 (1135)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 777 (1135)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEE
Q 001159 778 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYV 856 (1135)
Q Consensus 778 ~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~l 856 (1135)
+. ..| ...|.+++|+| ++++|
T Consensus 257 --------------------------------------------------------~~-~~~-~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 257 --------------------------------------------------------LN-QGH-QKGILSLDWCHQDEHLL 278 (416)
T ss_dssp --------------------------------------------------------CC-SCC-SSCEEEEEECSSCSSCE
T ss_pred --------------------------------------------------------ee-cCc-cCceeEEEeCCCCCCeE
Confidence 00 015 77889999999 89999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEcccceeeEEec------------
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNVRVDEVKTKLK------------ 922 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~~lasg~~dg~v~iwd~~~~~~~~~l~------------ 922 (1135)
++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+.+++......
T Consensus 279 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 9998 89999999999999999999999999999999 66 899999999999999998765432221
Q ss_pred -----------------------CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 923 -----------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 923 -----------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
.|..++++++|+|||++|++++.|++|+||++.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16778889999999999999999999999999864
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4e-35 Score=328.90 Aligned_cols=319 Identities=13% Similarity=0.173 Sum_probs=270.4
Q ss_pred cCCcceeeecCCCCCCccccCCC--------cceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccc
Q 001159 312 TGQSDEVSFAGVAHTPNVYSQDD--------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1135)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~~d~--------~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~ 383 (1135)
.+.+.+++++|+|+.++....+. .....+..+.|.+.|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 44678899999999876543222 3345566777999999999999998 678888 9999999998876433
Q ss_pred cCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec
Q 001159 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (1135)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~ 463 (1135)
. +. .....+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~--~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 P--VS------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp C--SE------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred e--ee------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 2 00 0012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc
Q 001159 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1135)
Q Consensus 464 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 543 (1135)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998855 899999999999999999887766654 5678
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .|.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999875 788999999988764 5666666 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
..... ...|.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 65543 337999999999999999999999999996
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-35 Score=327.54 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=226.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|...|++++|+|++++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999876554 6789999999999999999 899999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++.+....+..|...|.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 99999999999999999999999865 89999999999999999999988899999999999999999999999985
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc-C
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-K 642 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~ 642 (1135)
++.|++||+++++.+..+..+....+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++ +
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred --CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 8899999999999888887666558999999999999999999999999999999999998877553333334444 6
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.+|++|+.||.|++||+.++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC
T ss_pred CCcEEEEECCCCEEEEEECCCc
Confidence 8899999999999999999876
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.9e-36 Score=335.66 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=245.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.++|.+++|+|||+ +++++..++.+.+|.......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 566676666666665443322211 346999999999999999999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEee--cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe--eeeeecCCCCCe
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 500 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 500 (1135)
+++ ||.|++||+.++........+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876555444444 7999999999999999 89999999999999999887 667788899999
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++|+|++ .++++++.||.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998854 89999999999999999998888888889999999999999999999875 889999999999988
Q ss_pred EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88753 33 7999999999999999999999999999988754 34444 44799999999999999999999999999
Q ss_pred cCCC
Q 001159 661 NSDG 664 (1135)
Q Consensus 661 ~~~~ 664 (1135)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9876
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-37 Score=356.47 Aligned_cols=275 Identities=10% Similarity=0.061 Sum_probs=214.6
Q ss_pred ceeeEEeecCCCCeeEEEEecCC-C-------eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCC
Q 001159 336 TKTVVRTLNQGSNVMSMDFHPQQ-Q-------TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 336 ~~~~~~~~~h~~~V~~v~~sp~g-~-------~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+.....++.+.+.|++|+|+|++ . .+||+|+.++. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~---------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D---------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------
Confidence 45556677788999999999987 1 37888875431 0
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCcee-eeeEeecccCCEEEEEEecC------CCeEEEEEEcCCCcEE
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d------~~~~~l~s~~~d~~i~ 480 (1135)
-..+|+++.||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +||+++.||+|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 0136899999999999999999998876422 12246678899999999997 45 899999999999
Q ss_pred EEEcCCCee-----------eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEecCCCCcEEEE-
Q 001159 481 VWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM- 547 (1135)
Q Consensus 481 iwd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~- 547 (1135)
+||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 2467889999999999864 4899999999999999997644 45688899999999
Q ss_pred -EEcCCC-CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC-CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 548 -AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 548 -~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+|++++ .+|++++. |++|++||+++++.+..+.+|.. ..|.+++|+|+++.+++++.|++|++||++++..+.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 578888 88999985 89999999999888777777654 247889999999999999999999999999999888
Q ss_pred EEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 625 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.+.+|.. .|++++|+|++++|++|+.||+|++||...
T Consensus 392 ~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 8877644 899999999999999999999999999743
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.9e-35 Score=326.89 Aligned_cols=205 Identities=17% Similarity=0.282 Sum_probs=178.2
Q ss_pred eeEeecccCCEEEEEE-----ec-CCCeEEEEEEcCCCcEEEEEcCCC-------eeeeeecCCCCCeeEEEeeccCCcc
Q 001159 446 HLEIDAHVGGVNDIAF-----AH-PNKQLCIVTCGDDKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQ 512 (1135)
Q Consensus 446 ~~~l~~h~~~v~~v~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~ 512 (1135)
...+.+|.+.|++++| ++ +++ +|+||+.|++|++||+.++ .....+.+|...|.+++|+|++ .
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--C 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--T
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--C
Confidence 3478899999999999 66 787 8999999999999998753 4567889999999999998865 8
Q ss_pred EEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee---cccCC
Q 001159 513 FIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GFRKR 589 (1135)
Q Consensus 513 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~~~~ 589 (1135)
++++++.|++|++||+++++....+..|...|.+++|+|++++|++++. |+.|++||+... ...... +|..
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~~- 163 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA----EREIKLWNILGE-CKFSSAEKENHSD- 163 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET----TSCEEEEESSSC-EEEECCTTTSCSS-
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC----CCEEEEEeccCC-ceeeeecccCCCc-
Confidence 9999999999999999999998899999999999999999999999985 889999999843 333333 4544
Q ss_pred ceeEEEecCCC----------CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 590 SLGVVQFDTTR----------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 590 ~v~~i~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
.|.+++|+|++ .++++++.||.|++||. ..+....+..|.. .|.+++|+|++++|++|+.||.|++|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--NVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS--CEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc--cceEEEECCCCCEEEEEcCCCeEEEE
Confidence 79999999987 78999999999999994 4666777776644 79999999999999999999999999
Q ss_pred EcCC
Q 001159 660 ANSD 663 (1135)
Q Consensus 660 d~~~ 663 (1135)
|+.+
T Consensus 241 d~~~ 244 (343)
T 2xzm_R 241 DILN 244 (343)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9843
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-35 Score=344.12 Aligned_cols=345 Identities=11% Similarity=0.106 Sum_probs=282.5
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999998865543 34445 4455557899998 89999999999999999999
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 999989999999999999865 89999999999999999999999999999999999999999999999985 889
Q ss_pred EEEEECCCCeEEEEeeccc--CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCE
Q 001159 569 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 646 (1135)
|++||+++++.+..+..+. ...+.++++.+.+... .... +...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEI--STSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGG--CCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeec--ccCcccceEEcCCCCE
Confidence 9999999999999988643 2267777776553221 0111 1236788999999999
Q ss_pred EEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
|++++.||.|++||+.++....
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~---------------------------------------------------------- 283 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTI---------------------------------------------------------- 283 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEE----------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeE----------------------------------------------------------
Confidence 9999999999999986551000
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
.+
T Consensus 284 -----------------------------------------------------~~------------------------- 285 (420)
T 3vl1_A 284 -----------------------------------------------------QL------------------------- 285 (420)
T ss_dssp -----------------------------------------------------EE-------------------------
T ss_pred -----------------------------------------------------Ec-------------------------
Confidence 00
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC-EEEEEe-CCeEEEEECCCccE-EEEEeC-CC
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PP 882 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-h~ 882 (1135)
.. .| ...+.+++|+|+++ +|++|+ ||.|++||+.+++. +..+.+ |.
T Consensus 286 ---------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 286 ---------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp ---------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred ---------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence 00 14 77899999999998 999998 89999999998754 677776 66
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---------eeeEEecCcCCCeEEEEEcCCCC---eEEEEcCCCcEE
Q 001159 883 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLC 950 (1135)
Q Consensus 883 ~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~ 950 (1135)
..|.++.++ ++++|++++.||.|++|++... .....+.+|.+.|.+++|+|+++ .+++++.+|.+.
T Consensus 336 ~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~ 413 (420)
T 3vl1_A 336 TPINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA 413 (420)
T ss_dssp SCEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred CCceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence 778888665 5789999999999999998863 22334668899999999999999 788888899999
Q ss_pred EEeCCC
Q 001159 951 MWSIDK 956 (1135)
Q Consensus 951 iwd~~~ 956 (1135)
+|+++.
T Consensus 414 ~~~~~~ 419 (420)
T 3vl1_A 414 LYNLSN 419 (420)
T ss_dssp EEESCC
T ss_pred EEeccC
Confidence 999874
No 49
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=9.7e-34 Score=365.61 Aligned_cols=530 Identities=10% Similarity=0.045 Sum_probs=376.1
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC------CCcEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------DKMIK 480 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~------d~~i~ 480 (1135)
+...+.+++||| +.||.++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 556799999995 58888776 68999999886532 5678999999999999999 6676643 34899
Q ss_pred EEEcCCCeeeeeecCCCCCe-------eEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPV-------YSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
+||+.+++ ...+..|...+ .+++|+|++ +++++++.+ ..|.+||+..+.... +..+. ...+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg--~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~--~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGP--ATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCS--CSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCCCC--EEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCC--ccee
Confidence 99988877 57788888888 899999865 677777754 357777776654332 22222 2356
Q ss_pred EEcCCCCEEEEEecCCC--------CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 548 AYSADGTRLFSCGTSKE--------GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+|+| | ++++++.+.+ ++....+|....+.....+.+|.. .+.++.|+++ ..+++++.++.+.+|.+..
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~ 233 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDL 233 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEET
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeC
Confidence 7999 8 7777642111 123345554333344455677766 8999999988 5666777889999998653
Q ss_pred -CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCC
Q 001159 620 -MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1135)
Q Consensus 620 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 698 (1135)
+.....+..+. .+...+|+|||+.|+++. ++.|++|+.... .+. .+..+...
T Consensus 234 ~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~-~l~~~~~~--------------------- 286 (1045)
T 1k32_A 234 DGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIE-KIEIGDLE--------------------- 286 (1045)
T ss_dssp TSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEE-ECCCCCCC---------------------
T ss_pred CCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-Eee-eeccCccc---------------------
Confidence 44445554443 367789999999998874 789999998332 111 11110000
Q ss_pred ccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEE
Q 001159 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVR 778 (1135)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 778 (1135)
..... ..+...+ ..
T Consensus 287 ------------------------------------------------------------~~~~~-----~~~~~~v-~~ 300 (1045)
T 1k32_A 287 ------------------------------------------------------------SPEDR-----IISIPSK-FA 300 (1045)
T ss_dssp ------------------------------------------------------------BCCSE-----EEECGGG-GE
T ss_pred ------------------------------------------------------------ccccc-----ccccccc-ce
Confidence 00000 0134456 88
Q ss_pred EEEe-cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC-ceEEEEeecCCCEE
Q 001159 779 LIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE-SAACIALSKNDSYV 856 (1135)
Q Consensus 779 ~~~s-~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~i~~l~~s~dg~~l 856 (1135)
++|+ |||+.|++++ ++.+.+|++. ++.... +.. | .. .+..++|+ ||+.+
T Consensus 301 ~~~S~pdG~~la~~~-~~~i~~~~~~----------------------~~~~~~--~~~--~-~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVS-RGQAFIQDVS----------------------GTYVLK--VPE--P-LRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTT----------------------SSBEEE--CSC--C-SCEEEEEECSS-SEEEE
T ss_pred eeecCCCCCEEEEEE-cCEEEEEcCC----------------------CCceEE--ccC--C-CcceEEeeeEc-CCCeE
Confidence 9999 9999888877 7778877543 222221 111 4 55 89999999 99999
Q ss_pred EEEe-CCeEE-EEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS-GGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~-dg~i~-vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++++ ++.+. +||+.+++... +.+|...+.+++||| ||++||+++.++.|++||+.+++....+.+|.+.+.+++||
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 9998 57788 99998876544 447888999999999 89999999999999999999999888887899999999999
Q ss_pred CCCCeEEEEcCCC----------cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEec
Q 001159 935 PTLNALVSSGADA----------QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1003 (1135)
Q Consensus 935 ~d~~~l~s~~~D~----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~ 1003 (1135)
|||++|++++.++ .|++||+.+++. .....+. ..+..++|+|||++|++ +.++...+|+.
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC---cccCCceEcCCCCEEEEEecccCCcCcch
Confidence 9999999887654 899999998752 1222222 45778999999999988 45555555654
Q ss_pred -CCce-------e---------------------------------eccCCCCCCCCCEEEEEEeeCCCEEEE-------
Q 001159 1004 -KLEC-------S---------------------------------RSWSPKDALPAPISSAIYSCDGLLVYA------- 1035 (1135)
Q Consensus 1004 -~~~~-------~---------------------------------~~~~~~~~h~~~i~~~~~s~d~~~l~~------- 1035 (1135)
.... + ........|...+..++|+|||+++++
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~ 580 (1045)
T 1k32_A 501 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF 580 (1045)
T ss_dssp SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred hccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcc
Confidence 1111 0 000111234677899999999998775
Q ss_pred ------EeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1036 ------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1036 ------~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
......|.+||+.+++...-. ..+.++.++| ||++|++++.| .|++||+.+++
T Consensus 581 ~~~~~~~~~~~~l~~~d~~~~~~~~l~--------------~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 581 AAYYQGAPEKGVLLKYDVKTRKVTEVK--------------NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHHHCCCCCEEEEEEETTTCCEEEEE--------------EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccccCCCceEEEEECCCCcEEEee--------------cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 123557899999988753221 1234678999 88999998876 89999998766
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=352.86 Aligned_cols=357 Identities=9% Similarity=0.089 Sum_probs=268.6
Q ss_pred cCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEeCC---CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 405 ~~h~~~V~~v~~sp-d~~~las~~~dg~i~iwd~~~---~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
.+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|.+++|+|++. +|++|+.|++|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 68999999999999 999999999999999999987 5433333333 5999999999999999 899999999999
Q ss_pred EEEcC---CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEE--EcCCCCE
Q 001159 481 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 555 (1135)
Q Consensus 481 iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~~~~~ 555 (1135)
+||+. +++.+..+.+| .+..+.++|.. +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777776655 67777776632 122334444 6789999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeec--ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1135)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++++.||.|++||+++++++..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999975 88999999999999999998 555 89999999999999999999999999999999998886322 23
Q ss_pred CcceEEEc----CCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCC
Q 001159 634 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 634 ~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 709 (1135)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.+|...+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~------------------------------- 306 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQP------------------------------- 306 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCC-------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCC-------------------------------
Confidence 78999555 56889999999999999999887 4444444433211
Q ss_pred CCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee
Q 001159 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~ 789 (1135)
..+.|+|+++.+.
T Consensus 307 -------------------------------------------------------------------~~~~~~~~~~~l~ 319 (437)
T 3gre_A 307 -------------------------------------------------------------------SMEHFLPIEKGLE 319 (437)
T ss_dssp -------------------------------------------------------------------CGGGGSCBCSSGG
T ss_pred -------------------------------------------------------------------ccceecccccccc
Confidence 1222333333220
Q ss_pred EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEE
Q 001159 790 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 868 (1135)
Q Consensus 790 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd 868 (1135)
+.. +.+..| ...|++++|+ ++++|++|+ |+.|++||
T Consensus 320 ----~~~-------------------------------------~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 320 ----ELN-------------------------------------FCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp ----GCC-------------------------------------CCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred ----cce-------------------------------------eccccc-CCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 000 111125 8889999999 889999998 99999999
Q ss_pred CCCccEEEEEeCCCC---CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC--CCeEEEE
Q 001159 869 MMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSS 943 (1135)
Q Consensus 869 ~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~ 943 (1135)
+.+++....+.+|.. .+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999988643 456667777 55555443 333444455667789999999999998 7899999
Q ss_pred cCCCcEEEEe
Q 001159 944 GADAQLCMWS 953 (1135)
Q Consensus 944 ~~D~~i~iwd 953 (1135)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.7e-36 Score=346.65 Aligned_cols=283 Identities=16% Similarity=0.170 Sum_probs=239.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 466899999998 588899999999999988765432 3344 4566668999999999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
.||.|++||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999875443 5678999999999999999 899999999999999999999999999999999999998
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCceeEecC---CCCcEEE---------------------EEEcCCCCEEEEEecCC
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTM---------------------MAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~---------------------~~~s~~~~~l~~~~~~~ 563 (1135)
++ .+|++++.||.|++||+++.+....+.. +...+.+ ++|+|++++|++++.
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 65 8999999999999999998888777764 3334444 445789999999875
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCCce-EEEEeCCCCCCCcceEEEc
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~ 641 (1135)
++.|++||+++++.+..+...+...|.+++|+|++. +|++++.||.|++||+.+++. +..+..+.. ..|.++.+
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~- 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-TPINNVYF- 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT-SCEEEEEE-
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC-CCceEEEe-
Confidence 888999999999988888765555899999999998 999999999999999998754 667765432 36777755
Q ss_pred CCCCEEEEEECCCcEEEEEcCCC
Q 001159 642 KEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 642 ~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+++++|++++.|+.|++|++.+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
No 52
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=322.84 Aligned_cols=304 Identities=15% Similarity=0.204 Sum_probs=231.9
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+.+.+..+.+|.. .|.+++|+++ +|++++.|++|++||+..+ +.+..+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4567788999988 8999999987 9999999999999999875 445555332245589999999999999999999
Q ss_pred CcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcc
Q 001159 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
++|++|+....... ..
T Consensus 80 ~~v~iw~~~~~~~~--~~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADR--TF-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence 99999997543100 00
Q ss_pred cccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcc
Q 001159 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 813 (1135)
Q Consensus 734 ~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 813 (1135)
.. .. +..
T Consensus 96 --------------------------------------~~---~~------------------~~~-------------- 102 (330)
T 2hes_X 96 --------------------------------------EM---DL------------------LAI-------------- 102 (330)
T ss_dssp --------------------------------------CC---EE------------------EEE--------------
T ss_pred --------------------------------------cc---ee------------------EEE--------------
Confidence 00 00 000
Q ss_pred cccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC----ccEEEEEeCCCCCeEEE
Q 001159 814 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFL 888 (1135)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~h~~~v~~l 888 (1135)
+.+ | ...|.+++|+|+|++||+++ |++|++||+.. .+++..+.+|...|.++
T Consensus 103 --------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 103 --------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp --------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred --------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 111 6 88899999999999999999 89999999942 35678889999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccc--eeeEEecCcCCCeEEEEEcCC--CCeEEEEcCCCcEEEEeCCCCcee---c
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKL---K 961 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iwd~~~~~~~---~ 961 (1135)
+|+| ++.+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+... .
T Consensus 160 ~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 160 IWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999 8999999999999999998876 678889999999999999999 779999999999999999764211 1
Q ss_pred eeeeecCCC-CCCCCCCceEEEECCCCcEEEE-EecCeEEEEec-CCc--eeeccCCCCCCCC-CEEEEEEee--CCCEE
Q 001159 962 SRFIQAPAG-RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE--CSRSWSPKDALPA-PISSAIYSC--DGLLV 1033 (1135)
Q Consensus 962 ~~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~--~~~~~~~~~~h~~-~i~~~~~s~--d~~~l 1033 (1135)
..+.....+ |. ..|.+++|++++ +|++ +.|+.|+||+. .+. ..... ..+|.. .|.+++|+| ++++|
T Consensus 239 ~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 239 WVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCE
T ss_pred eEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEE
Confidence 112223332 44 689999999877 4555 78999999999 443 22222 234566 899999999 78999
Q ss_pred EEEeCCCeEEEEECCC
Q 001159 1034 YAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1034 ~~~~~dg~I~vwd~~~ 1049 (1135)
++|+.||.|++|++++
T Consensus 313 as~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEecCCCcEEEEEecc
Confidence 9999999999999875
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=355.91 Aligned_cols=344 Identities=10% Similarity=0.048 Sum_probs=239.1
Q ss_pred CCcceEEEEEcCCC---------CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC
Q 001159 407 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1135)
Q Consensus 407 h~~~V~~v~~spd~---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~ 477 (1135)
+.+.|.+|+|+|++ ++||+|+.++.. ...+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999866420 01368888 899999999
Q ss_pred cEEEEEcCCCeee----eeecCCCCCeeEEEeecc----CCccEEEEEEcCCeEEEEeCcCCCc-----------eeEec
Q 001159 478 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 538 (1135)
Q Consensus 478 ~i~iwd~~~~~~~----~~~~~h~~~v~~i~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~ 538 (1135)
+|+|||+.+++.. .++.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887642 346678899999999997 3467999999999999999986542 23567
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEEeecccCCceeEE--EecCCC-CEEEEEeCCCeEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~i--~~s~~~-~~l~~~~~dg~i~i 614 (1135)
.|...|.+++|++++ .|++|+. |++|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888875 8999999999764 4556888887 89998 578887 89999999999999
Q ss_pred EECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccc
Q 001159 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1135)
||+++++.+..+..+.....|.+++|+|+++.+++++.|++|++||+.++ .....+.+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~g--------------------- 395 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVS--------------------- 395 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEE---------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeec---------------------
Confidence 99998887766665533235789999999999999999999999998765 11100000
Q ss_pred cCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccc
Q 001159 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1135)
Q Consensus 695 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1135)
T Consensus 396 -------------------------------------------------------------------------------- 395 (524)
T 2j04_B 396 -------------------------------------------------------------------------------- 395 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 775 VVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 775 i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
| ...|.+++|||+|+
T Consensus 396 ----------------------------------------------------------------H-~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 396 ----------------------------------------------------------------R-ETTITAIGVSRLHP 410 (524)
T ss_dssp ----------------------------------------------------------------C-SSCEEEEECCSSCC
T ss_pred ----------------------------------------------------------------C-CCceEEEEeCCCCC
Confidence 4 55666666666666
Q ss_pred EEEEEe-CCeEEEEECCCccEEEEEeC-----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceeeEEecCcCCC
Q 001159 855 YVMSAS-GGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNR 927 (1135)
Q Consensus 855 ~la~~~-dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~ 927 (1135)
+|++|+ ||+|++||+..+ .+...+. +...|.+++|+| ++..+. ... .+++|+.. ++.++..+.+|.+.
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCS
T ss_pred eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCce
Confidence 666666 666777766442 2111110 122467889999 676552 222 34444443 56778889999999
Q ss_pred eEEEEEcCCCC---eEEEEcCCCcEEEEeCCC
Q 001159 928 ITGLAFSPTLN---ALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 928 i~~l~~s~d~~---~l~s~~~D~~i~iwd~~~ 956 (1135)
|.+|+|+|++. ++|+++.||+|+||++..
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999999964 999999999999999875
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-34 Score=329.12 Aligned_cols=290 Identities=14% Similarity=0.276 Sum_probs=234.4
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC------------------CcEEEEEEcCCCCEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------------NWCTMMAYSADGTRL 556 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------~~i~~~~~s~~~~~l 556 (1135)
+|...|.+++|+|++ .+|++|+ ++++++|++.+++....+..+. ..|.+++|+|++++|
T Consensus 62 ~h~~~V~~v~fspdg--~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCC--CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 599999999999865 8898876 7899999999888776665432 248999999999999
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++++. |+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+.+++....+..+ ..+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---CCcE
Confidence 99985 88999999999999999999988 8999999999999999999999999999999988887654 3589
Q ss_pred eEEEcC-CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCC
Q 001159 637 RLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1135)
Q Consensus 637 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 715 (1135)
+++|+| ++++|++++.|+.|++||+.++ .....+....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~---------------------------------------- 249 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSEN---------------------------------------- 249 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccc----------------------------------------
Confidence 999999 8999999999999999998776 2111110000
Q ss_pred CCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccc
Q 001159 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNA 795 (1135)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg 795 (1135)
.....
T Consensus 250 --------------------------------------------------~~~~~------------------------- 254 (393)
T 1erj_A 250 --------------------------------------------------ESGTG------------------------- 254 (393)
T ss_dssp -----------------------------------------------------CC-------------------------
T ss_pred --------------------------------------------------cCCCC-------------------------
Confidence 00001
Q ss_pred eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCC---
Q 001159 796 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT--- 871 (1135)
Q Consensus 796 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~--- 871 (1135)
| ...|.+++|+|+|++|++|+ |++|++||+.+
T Consensus 255 -------------------------------------------h-~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 255 -------------------------------------------H-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp -------------------------------------------C-SSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred -------------------------------------------C-CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence 3 44455555555555555554 45555555433
Q ss_pred ---------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC------C
Q 001159 872 ---------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP------T 936 (1135)
Q Consensus 872 ---------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~------d 936 (1135)
+.+...+.+|...|.+++|+| ++.+|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|++ +
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 369 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTT
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCC
Confidence 345667888999999999999 899999999999999999999999999999999999999986 6
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001159 937 LNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+.+|+|++.|++|++|++..
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEE
T ss_pred CCEEEEECCCCcEEECcccc
Confidence 88999999999999999865
No 55
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-34 Score=358.24 Aligned_cols=298 Identities=20% Similarity=0.282 Sum_probs=253.3
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+|++..+|++|+.||+|+||++.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344555 9999999999998766899999999999999986543211 0112367899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee---ec
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE 494 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~ 494 (1135)
|++++|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ +|++|+.|++|++||+........ ..
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999886554 7789999999999999999 799999999999999765543332 24
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|...|.+++|+|+.....+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6899999999999765578999999999999999999888899999999999999999999999985 889999999
Q ss_pred CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----------------CCCcce
Q 001159 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 637 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 637 (1135)
.+++.+..+..+. .|.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999888776543 799999999998777765 56699999999998887754311 113678
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 638 LRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 638 ~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
++|+|+|++|++|+.||+|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
No 56
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-34 Score=330.85 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=247.1
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+..+...+. |...|++++|+|+|..+||+|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 345566666 89999999999999338999999999999999987654320 124699999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 415 ~~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 44443323334558899999999999 8999999999999998 67888999
Q ss_pred cCCCCCeeEEEeeccCCcc-EEEEEEcCCeEEEEeCcC----CCceeEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCC
Q 001159 494 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .|...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999999875 5 999999999999999998 3344444 6888999999999 9999999975 88
Q ss_pred eEEEEECCCCeEEEEeecccC----------------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 568 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
.|++||+++++.+..+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 999999999887777765531 13444666777766 777999999999999999999987655
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
...+..++|+|++++|++++ |+.|++||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55778889999999999997 89999999864
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.8e-34 Score=330.64 Aligned_cols=317 Identities=20% Similarity=0.314 Sum_probs=275.3
Q ss_pred EeecccCCE-EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEE
Q 001159 448 EIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1135)
Q Consensus 448 ~l~~h~~~v-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iw 526 (1135)
.+.+|.+.| .+ ++++++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|++ .++++|+.||+|++|
T Consensus 113 ~l~~h~~~v~~~--~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEEE--EEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EecccCCCcEEE--EEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEE
Confidence 677898875 55 445677 899999999999999999999999999999999999963 699999999999999
Q ss_pred eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
|+.+++....+..|...|.+++|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .|.++++ ++++++++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEE
Confidence 999998888999999999999995 567888875 88999999999999999999887 8999998 68899999
Q ss_pred eCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
+.||.|++||+.+++.+..+..+.. .|.++.| ++.++++++.||.|++||+.++. ....+.
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-------------- 316 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLT-------------- 316 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEEC--------------
T ss_pred cCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEc--------------
Confidence 9999999999999999999886644 7889998 78899999999999999987651 110000
Q ss_pred CCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeec
Q 001159 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEE
Q 001159 767 PDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~ 846 (1135)
+ | ...+.+
T Consensus 317 ---------------------------------------------------------------------~--~-~~~v~~ 324 (445)
T 2ovr_B 317 ---------------------------------------------------------------------G--H-QSLTSG 324 (445)
T ss_dssp ---------------------------------------------------------------------C--C-CSCEEE
T ss_pred ---------------------------------------------------------------------C--C-cccEEE
Confidence 0 3 445555
Q ss_pred EEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-
Q 001159 847 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL- 921 (1135)
Q Consensus 847 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l- 921 (1135)
+.+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 325 ~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~ 399 (445)
T 2ovr_B 325 MEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLV 399 (445)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeee
Confidence 555 567888888 89999999999999999986 888999999964 69999999999999999999988888
Q ss_pred ----cCcCCCeEEEEEcCCCCeEEEEcCCCc----EEEEeCCCC
Q 001159 922 ----KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDKW 957 (1135)
Q Consensus 922 ----~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iwd~~~~ 957 (1135)
.+|.+.|++++|+|++.++++++.||+ |.+||++..
T Consensus 400 ~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 400 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 578899999999999999999999998 999999863
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-33 Score=328.95 Aligned_cols=319 Identities=18% Similarity=0.300 Sum_probs=274.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887533 355579999999999999999999987665 778999999999998 44 799999999999999
Q ss_pred cCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCC
Q 001159 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
+.+++.+..+.+|...|.++.+++ ..+++|+.||+|++||+.+++....+..|...|.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999953 68999999999999999999999999999999999999 7888999875
Q ss_pred CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
++.|++||+++++.+..+.+|.. .|.+++| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 88999999999999999998887 8999998 789999999999999999999999999887644 5666666 5
Q ss_pred CCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccc
Q 001159 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1135)
+.++++++.||.|++||+.++. ....+..
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-------------------------------------------------- 357 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQ-CLQTLQG-------------------------------------------------- 357 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCC-EEEEECS--------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCCc-EEEEEcc--------------------------------------------------
Confidence 6799999999999999987651 1100000
Q ss_pred ccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEec
Q 001159 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~ 803 (1135)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE----
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---- 878 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---- 878 (1135)
...| ...|.+++|+ ++++++|+ ||.|++||+.+++.+..+
T Consensus 358 --------------------------------~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 402 (445)
T 2ovr_B 358 --------------------------------PNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 402 (445)
T ss_dssp --------------------------------TTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred --------------------------------CCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc
Confidence 0014 6778888884 68899998 899999999999999888
Q ss_pred -eCCCCCeEEEEEecCCCcEEEEEeCCCc----EEEEEccc
Q 001159 879 -MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 914 (1135)
Q Consensus 879 -~~h~~~v~~l~~sp~~~~~lasg~~dg~----v~iwd~~~ 914 (1135)
.+|.+.|.+++|+| ++.+||+|+.||+ |.+||+..
T Consensus 403 ~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 403 SGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46788999999999 8999999999998 99999874
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.4e-34 Score=329.50 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=254.3
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEe
Confidence 345555 999999999999 4 7899999999999999987621110 0011256899999999999
Q ss_pred CC----C---CeEEEEeCCCeEEEEEeCCCCc-----eeeeeEeecc-----cCCEEEEEEe----cCCCeEE-EEEEcC
Q 001159 418 PD----G---LMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGD 475 (1135)
Q Consensus 418 pd----~---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~v~~v~~s----~d~~~~~-l~s~~~ 475 (1135)
|+ + ++|++++.||.|++||+.+++. +. .+..| ...|.+++|+ |++. + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998765 43 66778 5899999999 9998 7 999999
Q ss_pred CCcEEEEEcCC------Ceeee-----ee-------cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 476 DKMIKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 476 d~~i~iwd~~~------~~~~~-----~~-------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
|+.|++||+.+ ++.+. .+ ..|...|.+++|+|+ + ++++++.||.|++||+++.+....+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 77666 77 448999999999884 4 9999999999999999998888888
Q ss_pred cC---C---CCcEEEEEEcCCCCEEEEEecCCCCC---CeEEEEECCCCeEEEEeec-------------ccCCceeEEE
Q 001159 538 DA---P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQ 595 (1135)
Q Consensus 538 ~~---~---~~~i~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~i~ 595 (1135)
.. | ...|.+++|+|++++|++++. + +.|++||+++++.+..+.+ |.. .|.+++
T Consensus 224 ~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 298 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLS 298 (397)
T ss_dssp ECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEE
T ss_pred eccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEE
Confidence 88 8 889999999999999999875 6 8999999999999999988 766 899999
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCCceEEEEe------CC-------------CCCCCcceEEEcCCC----------CE
Q 001159 596 FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SL 646 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~~~~~----------~~ 646 (1135)
|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 99999999999999999999999999999998 44 013489999999998 79
Q ss_pred EEEEECCCcEEEEEcCCC
Q 001159 647 LAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 647 l~~~~~dg~i~iwd~~~~ 664 (1135)
|++++.||.|++|++.++
T Consensus 379 l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEEEETTTEEEEEEEEC-
T ss_pred EEEecCCCcEEEEEcCCC
Confidence 999999999999999876
No 60
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-33 Score=314.96 Aligned_cols=305 Identities=19% Similarity=0.300 Sum_probs=245.0
Q ss_pred EEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe-----eeeeecCCCCCeeEEEee
Q 001159 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 432 i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~~ 506 (1135)
+.++...+ +.+....+|+||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|...|.+++|+
T Consensus 18 ~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 18 LYFQSMMT-EQMTLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEccC-CceEEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence 33444433 333444578999999999999998433 89999999999999987643 567889999999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE-eec
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~ 585 (1135)
|++ .+|++++.|+.|++|+............+...+..+.++++++++++++. ++.+++||......... ..+
T Consensus 96 ~dg--~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 96 SDG--QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp TTS--SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSS
T ss_pred CCC--CEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEecc
Confidence 854 89999999999999999988888888888889999999999999999975 88899999987665444 445
Q ss_pred ccCCceeEEEecCCC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 586 FRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
|.. .+..++|++++ ..+++++.|+.|++||+.+++.+..+..|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 170 ~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 170 HSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp CSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred ccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 554 89999998765 5788899999999999999999999887754 899999999999999999999999999865
Q ss_pred CchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccc
Q 001159 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1135)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1135)
.. .+..+
T Consensus 247 ~~-~~~~~------------------------------------------------------------------------ 253 (340)
T 4aow_A 247 GK-HLYTL------------------------------------------------------------------------ 253 (340)
T ss_dssp TE-EEEEE------------------------------------------------------------------------
T ss_pred Cc-eeeee------------------------------------------------------------------------
Confidence 51 00000
Q ss_pred cccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeec
Q 001159 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 823 (1135)
Q Consensus 744 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 823 (1135)
T Consensus 254 -------------------------------------------------------------------------------- 253 (340)
T 4aow_A 254 -------------------------------------------------------------------------------- 253 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEE---------eCCCCCeEEEEEecCC
Q 001159 824 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF---------MSPPPAATFLAFHPQD 894 (1135)
Q Consensus 824 ~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~l~~sp~~ 894 (1135)
. + ...+.+++|+|++.+++++.|+.|++||+.++..+..+ .+|...|++++|+| +
T Consensus 254 -----------~---~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d 317 (340)
T 4aow_A 254 -----------D---G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-D 317 (340)
T ss_dssp -----------E---C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-T
T ss_pred -----------c---C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-C
Confidence 0 1 44567777888777777666888888888877666554 35888999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
+++||+|+.||.|+|||+.+|+
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999885
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=318.32 Aligned_cols=289 Identities=12% Similarity=0.127 Sum_probs=256.5
Q ss_pred EEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 340 ~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
.....|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence 33344999999999999998 788999999999999998876653 6789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcCCCe------
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------ 488 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~------ 488 (1135)
+++|++++.||.|++||+.+++.+. .+. |...|.+++|+|++. ++++++.+ +.|++||+..+.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999987665 444 888999999999999 88999888 999999998664
Q ss_pred -----eeeeecCCCC--CeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 489 -----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 489 -----~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.+..+..|.. .+.+++|+|++ .++++++.||.|++||+++ ......+..+...|.+++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3345556666 89999999865 8999999999999999998 566778888999999999999999999997
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC--------------eEEEEECCCCceEEEE
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 626 (1135)
. ++.|++||+++++.+..+.. .. .+..++|+|+++++++++.++ .+++||..+++.+..+
T Consensus 238 ~----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 238 R----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp T----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred C----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 5 88999999999999988883 33 799999999999999999888 8999999999999999
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..|.. .|.+++|+|++++|++++.||.|++|++.++
T Consensus 312 ~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 312 QGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 87754 7999999999999999999999999999866
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-33 Score=328.95 Aligned_cols=320 Identities=19% Similarity=0.308 Sum_probs=272.7
Q ss_pred ccCCCcce-EEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 404 LNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 404 ~~~h~~~V-~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+. .+.+|.+.|.+++|++++ .+++|+.|++|++|
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW 188 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence 45687775 66666 67899999999999999999987555 778999999999999887 68999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----------------------eeEecC
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDA 539 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~~ 539 (1135)
|+.+++.+..+.+|...|.+++|++.+++.++++++.||+|++||+.+... ...+..
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 999999999999999999999999877779999999999999999987653 334566
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|...+.++ +++++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+
T Consensus 269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 77777766 678899999985 88999999999999999999887 899999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
++.+..+..|.. .|.++.|+ +.++++++.||.|++||+.++..
T Consensus 342 ~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--------------------------------- 384 (464)
T 3v7d_B 342 GELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--------------------------------- 384 (464)
T ss_dssp TEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE---------------------------------
T ss_pred CcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce---------------------------------
Confidence 999999987654 78999997 57999999999999999865410
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
..
T Consensus 385 ------------------------------------------------------------------------------~~ 386 (464)
T 3v7d_B 385 ------------------------------------------------------------------------------KF 386 (464)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------ee
Confidence 00
Q ss_pred EEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 780 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
.+. | ...+..++|++++++++++
T Consensus 387 ~~~--------------------------------------------------------~-~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 387 SYH--------------------------------------------------------H-TNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp EEE--------------------------------------------------------C-TTCCCEEEEEECSSEEEEE
T ss_pred eec--------------------------------------------------------C-CCCccEEEEEeCCCEEEEe
Confidence 000 1 4455678899999999999
Q ss_pred eCCeEEEEECCCccEEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001159 860 SGGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 912 (1135)
Q Consensus 860 ~dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~ 912 (1135)
+||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 410 ~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 410 SENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp ETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 999999999999999886 66788999999997 4567777788887766643
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=311.38 Aligned_cols=289 Identities=16% Similarity=0.258 Sum_probs=253.0
Q ss_pred ceeeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEE
Q 001159 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 414 (1135)
+.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~ 65 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSV 65 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEE
Confidence 346677777 9999999999 9998 688999999999999988765442 55789999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 415 ~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
+|+|++++|++++.||.|++|++...........+.+|...|.+++| ++. ++++++.|+.|++|| .++.+..+.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99999999999999999999999876554555578899999999999 455 799999999999999 778888999
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1135)
.|...|.++++.|. ++.++++++.||.|++|| ..+....+.. +...+.+++|+|++. +++++. ++.|++||
T Consensus 140 ~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d 211 (313)
T 3odt_A 140 AHNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVD 211 (313)
T ss_dssp CCSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEE
T ss_pred cCCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEE
Confidence 99999999999884 237999999999999999 3445556666 888999999999998 777764 88999999
Q ss_pred CCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
+++++.+..+.+|.. .|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.|
T Consensus 212 ~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 212 MHTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp TTTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETT
T ss_pred CCchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCC
Confidence 999999999999887 89999999999 689999999999999999999999987754 799999999998 6679999
Q ss_pred CcEEEEEcCCC
Q 001159 654 NGIKILANSDG 664 (1135)
Q Consensus 654 g~i~iwd~~~~ 664 (1135)
|.|++|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999876
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.6e-34 Score=323.46 Aligned_cols=293 Identities=13% Similarity=0.117 Sum_probs=248.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc--ccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
|.++|++++|+|+|+ +||+|+.||.|+|||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999998 78899999999999998875 3332 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee----eeeecCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~h~~ 498 (1135)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..+.. .....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998865332 224567999999999999999 899999999999999988762 233467899
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCc------------------CCCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .++++++.||.|++||+. .......+..|...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999999855 899999999999999954 4566677778889999999999999999997
Q ss_pred cCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC--CceE---------------
Q 001159 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 623 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 623 (1135)
. ++.|++||+++++.+..+..|.. .|.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 88999999999999999998877 89999999999887777 899999999987 4210
Q ss_pred -----------------------EEEeCCCCCCCcceEEEc-CCC---CEEEEEECCCcEEEEEcCCCchhhh
Q 001159 624 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLR 669 (1135)
Q Consensus 624 -----------------------~~~~~~~~~~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 669 (1135)
..+. ..+...|.+++|. ++| .+|++++.||.|++|++.++.++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 1345589999966 677 9999999999999999987755443
No 65
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.6e-34 Score=323.67 Aligned_cols=291 Identities=17% Similarity=0.279 Sum_probs=245.4
Q ss_pred CCCCeeEEEEecC---CCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--
Q 001159 345 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.++|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCCC
Confidence 8999999999994 444566666788999999998765532 0 01112247788999999999
Q ss_pred --CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCCCeeeeee---
Q 001159 420 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1135)
Q Consensus 420 --~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 493 (1135)
+++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999887655 6778999999999999 787 8999999999999999999999888
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec----------------------------CCCCcEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD----------------------------APGNWCT 545 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~i~ 545 (1135)
.+|...|.+++|+|++ .+|++++.||.|++||+++.+....+. .|...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999999854 899999999999999998765443222 3888999
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe--------------EEEEeecccCCceeEEEecCC--CCEEEEEeCC
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--------------IKRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 609 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--------------~~~~~~~~~~~~v~~i~~s~~--~~~l~~~~~d 609 (1135)
+++|+ ++++++++. ++.|++||+.++. .+..+.+|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778988875 8899999998764 3778888877 7999999999 9999999999
Q ss_pred CeEEEEECCCCc----eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 610 FQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 610 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
|.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999875 444677765456899999999999999999999999999853
No 66
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-32 Score=324.33 Aligned_cols=345 Identities=17% Similarity=0.215 Sum_probs=268.1
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+.+|.. .|.+++|++++ ++++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc--CEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3556788888855677666 467999999999999999999999999987654 89999999988 999999999999
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
+||+.++ .....+.+
T Consensus 187 vwd~~~~-~~~~~~~~---------------------------------------------------------------- 201 (464)
T 3v7d_B 187 VWDIKKG-CCTHVFEG---------------------------------------------------------------- 201 (464)
T ss_dssp EEETTTT-EEEEEECC----------------------------------------------------------------
T ss_pred EEECCCC-cEEEEECC----------------------------------------------------------------
Confidence 9999877 32222222
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe--cCCcceeEecccceeeeEEeccccCCCCCcccc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT--NSGLSLLALASNAVHKLWKWQRTERNPSGKATA 815 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 815 (1135)
|...| .+++|+ +++..+++++.||.+++|++.............
T Consensus 202 ---------------------------------h~~~v-~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 202 ---------------------------------HNSTV-RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp ---------------------------------CSSCE-EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C
T ss_pred ---------------------------------CCCcc-EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 44555 888888 578899999999999999987654322211111
Q ss_pred cccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCC
Q 001159 816 NVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 894 (1135)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 894 (1135)
....................+ | ...+.++ +++++++++++ ||.|++||+.+++++..+.+|...|.+++|+| +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~ 321 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRG--H-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-E 321 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECC--C-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-T
T ss_pred CcceEeeccCCCeEEEEEccC--c-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-C
Confidence 111111111111111222333 5 6777766 78899999999 99999999999999999999999999999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCC
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 974 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
+++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.|++|++||+.+++..... ...
T Consensus 322 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----~~~---- 391 (464)
T 3v7d_B 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----HHT---- 391 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----ECT----
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----cCC----
Confidence 9999999999999999999999999999999999999997 589999999999999999987643221 111
Q ss_pred CCCceEEEECCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEE
Q 001159 975 LVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1046 (1135)
Q Consensus 975 ~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd 1046 (1135)
..+..++|++++++++++.|+.|++||+ +++.+..... .|...|.+++|+ +..++++++.||.+.+|-
T Consensus 392 -~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~--~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 392 -NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL--KDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTT--TTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhc--cCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 4567889999999999988999999999 7777765433 348899999997 445566667777666554
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-34 Score=331.92 Aligned_cols=314 Identities=13% Similarity=0.195 Sum_probs=254.2
Q ss_pred ecCCCCCCccccCCCcceeeEEee-c-CCCCeeEEEEec-CCCeEEEEEeccceEEEEEcCC---ccccccCCceeeccc
Q 001159 320 FAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDIS 393 (1135)
Q Consensus 320 ~s~~g~~~~~~~~d~~~~~~~~~~-~-h~~~V~~v~~sp-~g~~lla~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 393 (1135)
|++++..++....-...++++..+ . |.+.|++++|+| +++ +||+|+.||.|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 566666665543333566788888 5 789999999999 998 789999999999999876 331110
Q ss_pred ccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeC---CCCceeee-----eEee--c--ccCCEEEEE-
Q 001159 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQH-----LEID--A--HVGGVNDIA- 460 (1135)
Q Consensus 394 ~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~---~~~~~~~~-----~~l~--~--h~~~v~~v~- 460 (1135)
....+|...|.+++|+|++++|++|+.||.|++||+. +++..... ..+. . +...+.++.
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence 0012589999999999999999999999999999995 44433211 1111 1 556677777
Q ss_pred -EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC--CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 461 -FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 461 -~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
+++++. +|++|+.|+.|++||+++++.+..+.+ |...|.+++|+|++ .+|++|+.||.|++||+++.+....+
T Consensus 177 ~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 252 (437)
T 3gre_A 177 FVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSW 252 (437)
T ss_dssp EECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEE
Confidence 457777 899999999999999999999999988 89999999998864 89999999999999999998877777
Q ss_pred c-CCCCcEEEEEEc----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc-------------------------
Q 001159 538 D-APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------- 587 (1135)
Q Consensus 538 ~-~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------- 587 (1135)
. .+...|.+++|+ +++.+|++++. |+.|++||+++++.+..+.+|.
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5 677799999665 46778988875 8899999999999998888652
Q ss_pred CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-----------------------------------CC
Q 001159 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----------------------------------GL 632 (1135)
Q Consensus 588 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~ 632 (1135)
...|.+++|+ ++++|++++.||.|++||+.+++....+..+. +.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 2358889999 77899999999999999999998887776531 45
Q ss_pred CCcceEEEcCC--CCEEEEEECCCcEEEEE
Q 001159 633 PASPRLRFNKE--GSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 633 ~~v~~~~~~~~--~~~l~~~~~dg~i~iwd 660 (1135)
..|++++|+++ +.+|++|+.||.|+||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 68999999998 78999999999999995
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-34 Score=332.35 Aligned_cols=292 Identities=16% Similarity=0.213 Sum_probs=235.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~l 423 (1135)
|...|+|++|+|.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| ++++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCEE
Confidence 7889999999996655899999999999999987754321 01568999999999998 78999
Q ss_pred EEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
++|+.||+|++||+.++. .........+...+.+++|+|++. +|++|+.||.|++||++ ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999999999999998643 222222223445688999999999 89999999999999975 56778899999999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCcee---EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
+|+|..+ .++++|+.|++|++||+++.+... ....|...|.+++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9998754 589999999999999998766543 33567889999999999999999985 889999999999888
Q ss_pred EEeecccCC-----ceeEEEecCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCcceE-EEcC
Q 001159 581 RTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL-RFNK 642 (1135)
Q Consensus 581 ~~~~~~~~~-----~v~~i~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~ 642 (1135)
..+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 777665431 123356777777666654 34679999999999988875432 3367776 6999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+|++|++|+ |++|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 779999999887
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=320.48 Aligned_cols=289 Identities=15% Similarity=0.202 Sum_probs=242.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEec---cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-- 419 (1135)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCCC
Confidence 99999999999999878888887 99999999998765432 02368899999999999
Q ss_pred -CCeEEEEeCCCeEEEEEeCCCC-ceeeeeEeecccCCEEEEEE------ecCCCeEEEEEEcCCCcEEEEEcCCCe-ee
Q 001159 420 -GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAF------AHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ 490 (1135)
Q Consensus 420 -~~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~------s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~ 490 (1135)
+++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999876 443 67899999999965 67888 89999999999999999887 67
Q ss_pred eeecCCCC----CeeEEEeec--cCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcC---CCCEEEEEec
Q 001159 491 YTFEGHEA----PVYSVCPHH--KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRLFSCGT 561 (1135)
Q Consensus 491 ~~~~~h~~----~v~~i~~~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~ 561 (1135)
..+..|.+ .|.+++|.+ ..++.++++++.||.|++||+++.+... ...+...|.+++|+| ++.++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 77766655 899998422 2345899999999999999999877643 456778999999999 9999999875
Q ss_pred CCCCCCeEEEEECCCCeEEEEee-----cccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC---------------
Q 001159 562 SKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM--------------- 620 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~--------------- 620 (1135)
++.|++||+++++.+..+. +|.. .|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 233 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 233 ----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp ----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred ----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 8899999998877655554 7766 899999999998 8999999999999999854
Q ss_pred ----ceEEEEeCCCCCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCC
Q 001159 621 ----NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1135)
Q Consensus 621 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~ 664 (1135)
+.+..+..|. ..|.+++|+|++++|+ +++.||.|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 3455666654 4899999999999998 7999999999999765
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.6e-33 Score=316.31 Aligned_cols=315 Identities=15% Similarity=0.203 Sum_probs=252.0
Q ss_pred EEECCCCeEEEEeecccCCceeEEEecCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEE
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 648 (1135)
+|+.........+.+|.. .|.+++|+|++ ++|++++.||.|++||+.+++....+....+...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 455566777888888887 89999999999 999999999999999999999888887545566899999999 789999
Q ss_pred EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccC
Q 001159 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+++.|+.|++||+.+. . ...
T Consensus 136 s~~~d~~i~iwd~~~~-~-~~~---------------------------------------------------------- 155 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-V-IQV---------------------------------------------------------- 155 (383)
T ss_dssp EEETTTEEEEEETTSC-E-EEE----------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC-c-eEE----------------------------------------------------------
Confidence 9999999999998632 0 000
Q ss_pred CCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCC
Q 001159 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~ 808 (1135)
+. .
T Consensus 156 --------------------------------------------------~~----------~----------------- 158 (383)
T 3ei3_B 156 --------------------------------------------------FA----------K----------------- 158 (383)
T ss_dssp --------------------------------------------------EE----------C-----------------
T ss_pred --------------------------------------------------Ee----------c-----------------
Confidence 00 0
Q ss_pred CCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEE
Q 001159 809 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF 887 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~ 887 (1135)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.+
T Consensus 159 -------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 159 -------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp -------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred -------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 0 003 67799999999999999999 899999999 57888999999999999
Q ss_pred EEEecCCCc-EEEEEeCCCcEEEEEccc----ceeeEEecCcCCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceec
Q 001159 888 LAFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 888 l~~sp~~~~-~lasg~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
++|+| +++ +|++|+.|+.|++||+.+ +.++..+ +|.+.|++++|+| ++++|++++.|+.|++||+.+++...
T Consensus 210 ~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 210 AEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 99999 677 999999999999999998 6666666 6999999999999 99999999999999999999887543
Q ss_pred eeeeecC--CCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC
Q 001159 962 SRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1039 (1135)
Q Consensus 962 ~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d 1039 (1135)
....... ..+. ..+. +.|+|++ .+..++|+||+++ +++.|
T Consensus 288 ~~~~~~~~~~~~~---~~~~-~~~~p~~--------------------------------~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 288 QIIIHPHRQFQHL---TPIK-ATWHPMY--------------------------------DLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEEECCBCCCTTS---CCCC-CEECSSS--------------------------------SEEEEECBCCTTT--CTTCC
T ss_pred ccccccccccccc---cceE-EeccCCC--------------------------------CceEEEecCCccc--ccCCC
Confidence 3221110 0111 1222 3444443 4567888999998 89999
Q ss_pred CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1040 GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1040 g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
|.|++||+.+++.+..+..+. +.....+++|+| ++++|++|+ ||.|++|++.+
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~--------~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPN--------AAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTT--------BCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCC--------CCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 999999999999998887532 112233568999 789999997 99999999875
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-33 Score=317.03 Aligned_cols=301 Identities=11% Similarity=0.093 Sum_probs=232.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEecc-------ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.+.+|+|++|+|||+ +||+|+.+ +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999997 78888643 36999999876543211110 01112366788899888764
Q ss_pred CCCCeEEEE-----------eCCCeEEEEEeCCCCcee-eeeE-----eecccCCEEEEEEecCCCeEEEEEEcCCCcEE
Q 001159 418 PDGLMLGVA-----------FSKHIVHLYTYNPTGELR-QHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 418 pd~~~las~-----------~~dg~i~iwd~~~~~~~~-~~~~-----l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~ 480 (1135)
++.+++| +.|+.+++|++.+..... .... ...+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 5566665 357789999988754321 1111 12345568999999999964456777899999
Q ss_pred EEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--ecCCCCcEEEEEEcCCCCEEEE
Q 001159 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|||+.+++++..+. |...|.+++|+|++ .++++++.+ .+++|+..++..... ...|...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 99999999999886 88899999998855 889988855 566666666665543 3456778999999999999999
Q ss_pred EecCCCCCCeEEEEECCCCeE----EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEE-eCCCCCC
Q 001159 559 CGTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLP 633 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 633 (1135)
++.++.....+++|+...+.. ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ .+|. .
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--F 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--S
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--C
Confidence 987544445788999876653 345667766 8999999999999999999999999999999998876 5564 4
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|++++|+|||++||+++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999765
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.9e-33 Score=318.63 Aligned_cols=298 Identities=14% Similarity=0.150 Sum_probs=251.6
Q ss_pred eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC------ceeEecCCCCcEEEEEEcCC----C---CE
Q 001159 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TR 555 (1135)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~i~~~~~s~~----~---~~ 555 (1135)
....+.+|.+.|++++|+| .+|++++.||.|++||+.+.+ ....+..|...|.+++|+|+ + ++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3456789999999999987 599999999999999999888 67788899999999999999 9 99
Q ss_pred EEEEecCCCCCCeEEEEECCCCeE-----EEEeeccc----CCceeEEEec----CCCCE-EEEEeCCCeEEEEECCC--
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN-- 619 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~i~~s----~~~~~-l~~~~~dg~i~iwd~~~-- 619 (1135)
|++++. ++.|++||+.+++. +..+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999875 88999999998886 88888884 3389999999 99999 99999999999999998
Q ss_pred ----CceEE-----EEeC-----CCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCC
Q 001159 620 ----MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1135)
Q Consensus 620 ----~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1135)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~----------- 226 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ----------- 226 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC-----------
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc-----------
Confidence 66655 6643 3345579999999999 9999999999999998765 111000000
Q ss_pred CCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEee
Q 001159 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1135)
Q Consensus 686 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~ 765 (1135)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 766 LPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 766 ~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
..| .. . ...|.
T Consensus 227 ---~~h--------------------------------------------------------------~~---~-~~~i~ 237 (397)
T 1sq9_A 227 ---HSM--------------------------------------------------------------IN---N-SNSIR 237 (397)
T ss_dssp ---C-----------------------------------------------------------------C---C-CCCEE
T ss_pred ---ccc--------------------------------------------------------------cc---c-CCccc
Confidence 000 00 1 45688
Q ss_pred EEEeecCCCEEEEEe-C---CeEEEEECCCccEEEEEeC-------------CCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001159 846 CIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQ 908 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-d---g~i~vwd~~~~~~~~~~~~-------------h~~~v~~l~~sp~~~~~lasg~~dg~v~ 908 (1135)
+++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|+
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEE
Confidence 899999999999888 7 8999999999999999988 999999999999 899999999999999
Q ss_pred EEEcccceeeEEec------Cc---------------CCCeEEEEEcCCC----------CeEEEEcCCCcEEEEeCCCC
Q 001159 909 IYNVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 909 iwd~~~~~~~~~l~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~iwd~~~~ 957 (1135)
+||+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|++.++
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999999999 88 9999999999998 79999999999999999875
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.1e-33 Score=316.52 Aligned_cols=317 Identities=14% Similarity=0.249 Sum_probs=247.8
Q ss_pred ecCCCCCeeEEEeecc--CCccEEEEEEcCCeEEEEeCcCCCceeEecC-----CCCcEEEEEEcCC----CCEEEEEec
Q 001159 493 FEGHEAPVYSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-----PGNWCTMMAYSAD----GTRLFSCGT 561 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~s~~----~~~l~~~~~ 561 (1135)
..+|..+|.+++|+|. .....+++++.++.|++||+.+.+....+.. +...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 1225677777788999999998776654432 5578999999999 668988875
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeC-CCCCCCcceEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLR 639 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~ 639 (1135)
++.|++||+.+++.+..+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++.+..+.. ..+...|.+++
T Consensus 94 ----dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 ----RGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ----TCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ----CCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 88999999999999999998887 899999999 899999999999999999999999888832 22345899999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCC
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 719 (1135)
|+|++++|++++.||.|++||+.++ +....+.....
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~------------------------------------------- 204 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESYD------------------------------------------- 204 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHHT-------------------------------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCC-ccccccceeEE-------------------------------------------
Confidence 9999999999999999999999887 44444332110
Q ss_pred ccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeee
Q 001159 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKL 799 (1135)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~i 799 (1135)
++|++..+...........
T Consensus 205 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 205 -------------------------------------------------------------YNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp -------------------------------------------------------------CCGGGCSSCCCCEEECCCS
T ss_pred -------------------------------------------------------------ecCCCCcccccceeeccCc
Confidence 0111111111100000000
Q ss_pred EEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCcc-----
Q 001159 800 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK----- 873 (1135)
Q Consensus 800 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~----- 873 (1135)
+. .... | ...|.+++|+ ++++++++ |+.|++||+.++.
T Consensus 224 ~~-------------------------------~~~~--~-~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~ 267 (366)
T 3k26_A 224 FS-------------------------------TRDI--H-RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDK 267 (366)
T ss_dssp EE-------------------------------ECSS--C-SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred cc-------------------------------cccC--C-cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccc
Confidence 00 0111 5 7788888887 66888887 8888888887664
Q ss_pred ---------EEEEEeCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEccccee----eEEecCc--CCCeEEEEEcCC
Q 001159 874 ---------VMTMFMSPPPAATFLAFHPQD--NNIIAIGMEDSSVQIYNVRVDEV----KTKLKGH--QNRITGLAFSPT 936 (1135)
Q Consensus 874 ---------~~~~~~~h~~~v~~l~~sp~~--~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h--~~~i~~l~~s~d 936 (1135)
.+..+.+|...|++++|+| + +++|++|+.||.|++||+.+++. ...+.+| ...|++++|+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 268 IKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp CCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred cccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC
Confidence 3778889999999999999 7 99999999999999999998763 3477877 789999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCC
Q 001159 937 LNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+++|++++.||.|++||+.+
T Consensus 347 ~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 347 SSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSEEEEEETTSEEEEEEC--
T ss_pred CCeEEEEeCCCEEEEEEecC
Confidence 99999999999999999863
No 74
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-32 Score=308.28 Aligned_cols=302 Identities=13% Similarity=0.155 Sum_probs=249.3
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iw 482 (1135)
.+.+|...|++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987655 7789999999999999999 89999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC-----CeEEEEeCcCCCc-----------eeEecCCCC--cE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--WC 544 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~i 544 (1135)
|+.+++.+..+. |...|.+++|+|++ .++++++.+ |.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999999887 88999999998865 899999999 9999999987643 233444554 89
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1135)
.+++|+|++++|++++. ++.|++||+++ +..+..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999875 88999999998 788889998877 8999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccc
Q 001159 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 703 (1135)
..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 888732 368999999999999999999865555432210
Q ss_pred cccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec
Q 001159 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 783 (1135)
....+++|++...... ..+ ..|...| .+++|+|
T Consensus 293 ---------------------------------------~~~~i~~~d~~~~~~~---~~~----~~~~~~v-~~~~~s~ 325 (369)
T 3zwl_B 293 ---------------------------------------GKFEARFYHKIFEEEI---GRV----QGHFGPL-NTVAISP 325 (369)
T ss_dssp -----------------------------------------CEEEEEETTTCCEE---EEE----ECCSSCE-EEEEECT
T ss_pred ---------------------------------------CcceeEEEecCCCcch---hhe----ecccCcE-EEEEECC
Confidence 0023445554432111 111 1256677 9999999
Q ss_pred CCcceeEecccceeeeEEeccc
Q 001159 784 SGLSLLALASNAVHKLWKWQRT 805 (1135)
Q Consensus 784 dg~~l~~~~~dg~i~iw~~~~~ 805 (1135)
++++|++++.||.|++|++...
T Consensus 326 ~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 326 QGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TSSEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999998764
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-34 Score=328.21 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=226.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc--cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
+.++|++++|+|+|+ +||+|+.||.|+|||+.++ +.+.. +.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7899999999999999987 34332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe---eeeeecC-CCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 498 (1135)
|++++.|+.|++||+.++........+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998763334446778999999999999999 89999999999999999887 4677877 999
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcC------------------CCceeEecCCCCcEEEEEEcCCCCEEEEEe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY------------------LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.|.+++|+|++ .+|++++.|+.|++||+.. .+....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999999854 8999999999999999853 2233344 7888999999999999999997
Q ss_pred cCCCCCCeEEEEECCCCeE----EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc---------------
Q 001159 561 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 621 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1135)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 88999999999887 778888877 89999999999999888877666 66654211
Q ss_pred ------------------------eEEEEeC-----------CCCCCCcceEEEcCC-CC---EEEEEECCCcEEEEEc
Q 001159 622 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~v~~~~~~~~-~~---~l~~~~~dg~i~iwd~ 661 (1135)
....... ..|...|.++.+.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014457889987653 33 6999999999999985
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-32 Score=301.22 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=213.9
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~i 481 (1135)
+.+|...|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975321 223478899999999999864 77 8999999999999
Q ss_pred EEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCC-----
Q 001159 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 552 (1135)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~----- 552 (1135)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 566788899999999999975568999999999999999987642 4567788999999999997
Q ss_pred --------CCEEEEEecCCCCCCeEEEEECCCCe----EEEEeecccCCceeEEEecCCC---CEEEEEeCCCeEEEEEC
Q 001159 553 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~dg~i~iwd~ 617 (1135)
+++|++++. |+.|++||++++. ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 568999885 8899999998765 6678888887 89999999985 78999999999999999
Q ss_pred CCCc---eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 618 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 618 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
.+.. ....+..+.+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 12233223344579999999999999999999999999975
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=317.56 Aligned_cols=260 Identities=10% Similarity=0.070 Sum_probs=211.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 46899999999998 899999999999 6444432 35899999999999999
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC-----Ce
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----PV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~v 500 (1135)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .||+++.||+|++||... ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 5666666654432211 22 4688999999999999 899999999999999544 667777 766 49
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-------eeEe----cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
.+++|+|++ ++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.|
T Consensus 133 ~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 999999865 8999999999999999998753 3444 5667899999999999 666654 8899
Q ss_pred EEEECCCCeE---EEEee-cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE--cCC
Q 001159 570 VEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKE 643 (1135)
Q Consensus 570 ~~wd~~~~~~---~~~~~-~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~ 643 (1135)
++||+.++.. .+++. +|.. .|.+++|+ ++.+++++ +++|++||+.+++......+| ...|..++| +|+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCCC
Confidence 9999988773 35664 5554 89999999 68899887 699999999987774444344 458999999 999
Q ss_pred CCEEEEEECCCcEEEEEcC
Q 001159 644 GSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 644 ~~~l~~~~~dg~i~iwd~~ 662 (1135)
+..+++++.+|+ ++|...
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 999999999999 999865
No 78
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-32 Score=314.09 Aligned_cols=290 Identities=16% Similarity=0.248 Sum_probs=241.5
Q ss_pred CCCC--eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 345 QGSN--VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 345 h~~~--V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
|.+. +.+++|++ .. +++++.||.|+|||+.+++.... ....|...|.+++|+|++++
T Consensus 90 ~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 90 IIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp CCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSE
T ss_pred CcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCE
Confidence 4444 55566665 43 45677899999999998876542 12238899999999999999
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC-CCeeeeeecCCCCCee
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~ 501 (1135)
|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. +|++|+.|+.|++||++ .+..+..+.+|.+.|.
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence 9999999999999999987655 677999999999994 45 89999999999999998 5677888999999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+++|+|++ .+|++++.||.|++||+++......+..|...|.+++|+|++..+++.+. +..++.|++||+.+++.+.
T Consensus 222 ~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 222 GLAWRSDG--LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEECTTS--SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEE
T ss_pred EEEEcCCC--CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEE
Confidence 99999854 89999999999999999998888888899999999999998765554431 1238899999999999998
Q ss_pred EeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
.+..+. .|.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|++|
T Consensus 299 ~~~~~~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 299 TVDAGS--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEECSS--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEeCCC--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 887443 799999999999999954 8999999999997766654433445589999999999999999999999999
Q ss_pred EcCCCchh
Q 001159 660 ANSDGVRL 667 (1135)
Q Consensus 660 d~~~~~~~ 667 (1135)
++.++...
T Consensus 377 ~~~~~~~~ 384 (401)
T 4aez_A 377 RVYDGDHV 384 (401)
T ss_dssp ECCC----
T ss_pred ECCCCccc
Confidence 99988433
No 79
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-32 Score=335.38 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=183.8
Q ss_pred eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-----CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC
Q 001159 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1135)
Q Consensus 447 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg 521 (1135)
..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++ .+|++|+.||
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--SEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--CEEEEEeCCC
Confidence 367899999999999998654 899999999999999875 34567889999999999998855 8999999999
Q ss_pred eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe---ecccCCceeEEEecC
Q 001159 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY---SGFRKRSLGVVQFDT 598 (1135)
Q Consensus 522 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~~~~v~~i~~s~ 598 (1135)
+|++||+.++.....+..|...|.+++|+|++++|++++. |++|++||.......... .+|.. .|.+++|+|
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~ 527 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSP 527 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeC
Confidence 9999999999888899999999999999999999999985 889999998765444333 24544 799999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 599 TR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 599 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++ ..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||+|++||+.++
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 87 6899999999999999999999998887754 7999999999999999999999999998766
No 80
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.2e-33 Score=322.14 Aligned_cols=302 Identities=16% Similarity=0.204 Sum_probs=228.5
Q ss_pred EEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001159 580 KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIK 657 (1135)
Q Consensus 580 ~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 657 (1135)
......|.. .|++++|+| +++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 334455555 799999999 56789999999999999999887766666555666899999998 789999999999999
Q ss_pred EEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccc
Q 001159 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1135)
Q Consensus 658 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1135)
+||+.++. .
T Consensus 191 iwd~~~~~-~---------------------------------------------------------------------- 199 (435)
T 4e54_B 191 LQDFKGNI-L---------------------------------------------------------------------- 199 (435)
T ss_dssp EEETTSCE-E----------------------------------------------------------------------
T ss_pred EeeccCCc-e----------------------------------------------------------------------
Confidence 99985431 0
Q ss_pred cccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccc
Q 001159 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 817 (1135)
Q Consensus 738 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 817 (1135)
......
T Consensus 200 ----------------------------------------~~~~~~---------------------------------- 205 (435)
T 4e54_B 200 ----------------------------------------RVFASS---------------------------------- 205 (435)
T ss_dssp ----------------------------------------EEEECC----------------------------------
T ss_pred ----------------------------------------eEEecc----------------------------------
Confidence 000000
Q ss_pred cCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCc
Q 001159 818 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 896 (1135)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 896 (1135)
..+ ...+.+++|+|++++|++|+ ||.|++||+.+ +.+..+.+|...|++++|+|++..
T Consensus 206 -------------------~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 206 -------------------DTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDW 264 (435)
T ss_dssp -------------------SSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred -------------------CCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCce
Confidence 002 44567789999999999998 89999999864 566788899999999999995556
Q ss_pred EEEEEeCCCcEEEEEcccceeeEE---ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC
Q 001159 897 IIAIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 897 ~lasg~~dg~v~iwd~~~~~~~~~---l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 973 (1135)
+|++|+.|+.|++||+.+.+.... ..+|.+.|++++|+|||++|++++.|++|++||+.+++........... ..
T Consensus 265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--~~ 342 (435)
T 4e54_B 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--HF 342 (435)
T ss_dssp EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--CC
T ss_pred EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--cc
Confidence 899999999999999988765443 3679999999999999999999999999999999988754432211110 00
Q ss_pred CCCCceEEEECCCCcEEEEE-------------ecCeEEEEec-CCceeeccCCCCCCCCCEEEE-EEeeCCCEEEEEeC
Q 001159 974 PLVGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFC 1038 (1135)
Q Consensus 974 ~~~~v~~~~~s~dg~~l~~~-------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~-~~s~d~~~l~~~~~ 1038 (1135)
....+..+.|+|++.+++++ .++.|++||. +++.+..+.. +|...|.++ +|+|||++|++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~- 419 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD--PESSGISSLNEFNPMGDTLASAM- 419 (435)
T ss_dssp SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC--SSCCCCCCEEEECTTSSCEEEEC-
T ss_pred ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC--CCCCcEEEEEEECCCCCEEEEEc-
Confidence 01223445667766666653 2357999999 7777766543 457788887 6999999999875
Q ss_pred CCeEEEEECCCceee
Q 001159 1039 DGAIGVFDAETLRFR 1053 (1135)
Q Consensus 1039 dg~I~vwd~~~~~~~ 1053 (1135)
|+.|+||++++|+..
T Consensus 420 d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 GYHILIWSQQEARTR 434 (435)
T ss_dssp SSEEEECCCC-----
T ss_pred CCcEEEEECCcCeee
Confidence 889999999998753
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.1e-32 Score=310.87 Aligned_cols=282 Identities=15% Similarity=0.254 Sum_probs=242.6
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
-++.++||+++ +||+|. |++|+|||+.+|+.... + .+.+|...|++|+|+|+|++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~--~---------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQL--L---------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEE--E---------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEE--E---------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 688775 99999999999976542 0 1457888999999999999999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-CeeeeeecCCCCCeeEEEee
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~ 506 (1135)
.||.|+|||+.+++.+. .+.+|...|.+++++ +. +|++|+.|+.+++||... ...+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 778999999998886 45 899999999999999876 44567889999999999998
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCc----eeEecCCCCcEEEEEEcCCCCEE-EEEecCCCCCCeEEEEECCCCeEEE
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
|.+ .++++++.|+.+++|+....+. ......+...|.+++|+|++..+ ++++. ..|+.|++||+.+++...
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 865 8999999999999999987653 34567788899999999977654 44432 348899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 659 (1135)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++.++.+|.. .|.+++|+|+|++|++|+.|++|+||
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 888765 688899999999998865 789999999999999999988754 89999999999999999999999999
Q ss_pred EcCCC
Q 001159 660 ANSDG 664 (1135)
Q Consensus 660 d~~~~ 664 (1135)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 99765
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=311.60 Aligned_cols=307 Identities=15% Similarity=0.186 Sum_probs=245.9
Q ss_pred eeEEeec-CCCCeeEEEEec-CCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp-~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
+....+. |.+.|++++|+| +++ +||+|+.||.|+|||+.+++......... . .........+|...|.+++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~v~~~~ 106 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKA--V----CSIGRDHPDVHRYSVETVQ 106 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECE--E----EEECTTCTTCCSSCEEEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccc--c----ccccccccccCCCcEEEEE
Confidence 3444555 999999999999 998 78999999999999999887654311000 0 0011111346999999999
Q ss_pred EcC-CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC---CCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 416 WGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 416 ~sp-d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
|+| ++.+|++++.||.|++||+.+++... .+ .+...+.++.|++. +. ++++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence 999 78899999999999999999876554 33 37888999999984 44 78999999999999999999999
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-eeEe---------------cCCCCcEEEEEEcCCCCE
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDY---------------DAPGNWCTMMAYSADGTR 555 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~~~~~ 555 (1135)
.+.+|...|.+++|+|++. .++++++.||.|++||++.... ...+ ..|...|.+++|+|++++
T Consensus 181 ~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 9999999999999998752 3699999999999999987652 2222 467789999999999999
Q ss_pred EEEEecCCCCCCeEEEEECCCCeEEEEeecccC----CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
|++++. ++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..|..
T Consensus 260 l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 260 LLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp EEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred EEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 999985 88899999999887655443221 1222233334456677778899999999999999999987754
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.|.+++|+|++++|++++.||.|++|++.++
T Consensus 336 --~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 336 --TVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp --CEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred --eEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 7999999999999999999999999999887
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.9e-32 Score=304.79 Aligned_cols=293 Identities=12% Similarity=0.147 Sum_probs=214.7
Q ss_pred cCCEEEEEEecCCCeEEEEEEcCCC-------cEEEEEcCCCee----------eeeecCCCCCeeEEEeeccCCccEEE
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGDDK-------MIKVWDVVAGRK----------QYTFEGHEAPVYSVCPHHKESIQFIF 515 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1135)
..||++++|+||++ +|++||.|. .|++|++..+.. ...+.+|...|.++++.. ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~----~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK----GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET----TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC----CEEE
Confidence 45899999999998 899987543 599999876532 124667888888887643 5677
Q ss_pred EEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE----EEEe-----ecc
Q 001159 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTY-----SGF 586 (1135)
Q Consensus 516 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~-----~~~ 586 (1135)
+|+.++..++|... .++.+++|++.+... +... ..+
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 66554443333211 123344443322111 0111 111
Q ss_pred cCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
. ..+.+++|+|||+++++++ .|++|++||+.+++++..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++
T Consensus 133 ~-~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 133 D-DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp T-CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred c-cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 1 2578899999999987654 7899999999999999888633 369999999999999999865 5666665544
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccccccccccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1135)
......
T Consensus 208 ~~~~~~-------------------------------------------------------------------------- 213 (365)
T 4h5i_A 208 SCIARK-------------------------------------------------------------------------- 213 (365)
T ss_dssp CEEEEE--------------------------------------------------------------------------
T ss_pred cceeee--------------------------------------------------------------------------
Confidence 110000
Q ss_pred ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecC
Q 001159 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 824 (1135)
Q Consensus 745 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1135)
T Consensus 214 -------------------------------------------------------------------------------- 213 (365)
T 4h5i_A 214 -------------------------------------------------------------------------------- 213 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CC----eEEEEECCCccE----EEEEeCCCCCeEEEEEecCCC
Q 001159 825 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG----KVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDN 895 (1135)
Q Consensus 825 ~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg----~i~vwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~ 895 (1135)
... .| ...+.+++|+||++++++++ |+ .+++|++..... ...+.+|...|++++|+| ++
T Consensus 214 --------~~~--~~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg 281 (365)
T 4h5i_A 214 --------TDF--DK-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KG 281 (365)
T ss_dssp --------CCC--CT-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TS
T ss_pred --------ecC--CC-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CC
Confidence 000 04 56677788888888887776 54 577888766543 356778999999999999 89
Q ss_pred cEEEEEeCCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 896 NIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
++||+|+.|++|+|||+.+++++..+ .+|.+.|++|+|||||++|||+|.|++|+||++...
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999998875 799999999999999999999999999999999653
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.7e-32 Score=296.13 Aligned_cols=247 Identities=14% Similarity=0.209 Sum_probs=207.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc--cccccCCceeecccccccchhhhhccCCCcceEEEEEcCC--C
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd--~ 420 (1135)
|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|.+.|.+++|+|+ +
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCcC
Confidence 899999999999998 7899999999999999754 2222 26789999999999874 8
Q ss_pred CeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe--eeeeecCC
Q 001159 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1135)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h 496 (1135)
++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+ +. +|++|+.|++|++||++++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999876421 23367789999999999998 77 89999999999999998763 24567899
Q ss_pred CCCeeEEEeeccC-----------CccEEEEEEcCCeEEEEeCcCCC----ceeEecCCCCcEEEEEEcCCC---CEEEE
Q 001159 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---TRLFS 558 (1135)
Q Consensus 497 ~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~~ 558 (1135)
...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+.+|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999999863 24799999999999999998766 345678899999999999995 78888
Q ss_pred EecCCCCCCeEEEEECCCCe---EEEEe--ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 559 CGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
++. |+.|++||++++. ....+ ..+.. .|.+++|+|++++|++++.||.|++|+...
T Consensus 225 ~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 875 8899999998643 12233 34444 799999999999999999999999999763
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.7e-32 Score=311.65 Aligned_cols=364 Identities=13% Similarity=0.184 Sum_probs=253.3
Q ss_pred CCcEEEEEcCCCeeeeeecCCCCCeeEEEeec-cCCccEEEEEEcCCeEEEEeCcCCCceeEec-------------CCC
Q 001159 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------APG 541 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~~~ 541 (1135)
++.+++|++..++....+.+|.+.|.+++|+| ++ .+|++|+.||.|++||+.+......+. .|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 45678898888888889999999999999998 54 899999999999999999877655432 488
Q ss_pred CcEEEEEEcC-CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCC---CCEEEEEeCCCeEEEEEC
Q 001159 542 NWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 542 ~~i~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iwd~ 617 (1135)
..|.+++|+| ++.++++++. ++.|++||+.+++.+..+... . .+.++.+++. +.++++++.||.|++||+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 8999999999 7778888875 889999999999998888743 3 6888999885 459999999999999999
Q ss_pred CCCceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccC
Q 001159 618 DNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1135)
.+++.+..+..+.. .|.+++|+|++. ++++++.||.|++||+.++......+..+......
T Consensus 174 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---------------- 235 (408)
T 4a11_B 174 KSGSCSHILQGHRQ--EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ---------------- 235 (408)
T ss_dssp SSSCCCEEECCCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC----------------
T ss_pred CCcceeeeecCCCC--cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce----------------
Confidence 99999988887654 799999999998 58999999999999998774333333222111000
Q ss_pred CCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceE
Q 001159 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1135)
Q Consensus 697 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 776 (1135)
........|...|
T Consensus 236 ------------------------------------------------------------------~~~~~~~~~~~~v- 248 (408)
T 4a11_B 236 ------------------------------------------------------------------AVESANTAHNGKV- 248 (408)
T ss_dssp ------------------------------------------------------------------CTTTSSCSCSSCE-
T ss_pred ------------------------------------------------------------------eeccccccccCce-
Confidence 0000011266777
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+++|+|++++|++++.||.+++|++......... .+... .... ............+.++
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~~-----~~~~-~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKVC-----NNSK-KGLKFTVSCGCSSEFV 308 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCCC-----CCCS-SCCCCEECCSSSSCEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceec--------------ccccc-----cccc-ccceeEEecCCCceEE
Confidence 99999999999999999999999988653321100 00000 0000 1222233334455566
Q ss_pred EEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcC-
Q 001159 857 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP- 935 (1135)
Q Consensus 857 a~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~- 935 (1135)
+++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~ 384 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPA 384 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC----------------------
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccc
Confidence 665699999999999999999999999999999999 8999999999999999999999877665443322 22333
Q ss_pred CCCeEEEEcCCCcEEEEeCCC
Q 001159 936 TLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
+...+.+.+.|+.+++|+...
T Consensus 385 ~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 385 FEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------
T ss_pred cceeecccCccCceeecCCcc
Confidence 344566777899999998764
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=317.81 Aligned_cols=320 Identities=9% Similarity=0.117 Sum_probs=251.0
Q ss_pred ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 452 h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
....|.+++|+|||+ ++||++.|++|+ |...++ .+.+|...|.+++|+|++ .++. |++.+.
T Consensus 14 ~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg---------~~~~---~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE---------FENK---LDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC---------CCCT---TTTSCC
T ss_pred hhccEEEEEECCCCC--EEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC---------Ccce---EEEEeC
Confidence 456799999999999 899999999999 755554 447999999999999854 4555 444444
Q ss_pred CceeEec-CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC----CceeEEEecCCCCEEEEE
Q 001159 532 GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 532 ~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~i~~s~~~~~l~~~ 606 (1135)
+....+. .+...|.+++|||+|.+|++++. ++.|++||... .+..+. |.. ..+.+++|+|||++|++|
T Consensus 75 ~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~----dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 75 QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN----NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp CSSCSSTTSCSCCEEEEEECSSSSCEEEEET----TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCceEeecCCCCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 4333333 44778999999999999999985 88999999544 666666 553 259999999999999999
Q ss_pred eCCCeEEEEECCCCce-------EEEEeCC--CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccc
Q 001159 607 GDEFQIKFWDMDNMNM-------LTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~-------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 677 (1135)
+.||+|++||+.++.. +.++..+ ++...|.+++|+|+| +++++.|++|++|++.++.. ...
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~~~------- 217 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-QPV------- 217 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-CCC-------
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-ccc-------
Confidence 9999999999998763 5666322 234689999999999 88899999999999866510 000
Q ss_pred cccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCC
Q 001159 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1135)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~ 757 (1135)
T Consensus 218 -------------------------------------------------------------------------------- 217 (588)
T 2j04_A 218 -------------------------------------------------------------------------------- 217 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCC
Q 001159 758 PSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINES 837 (1135)
Q Consensus 758 ~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1135)
+ .. + ..+
T Consensus 218 -----------------~-~t------------------L------------------------------------~~~- 224 (588)
T 2j04_A 218 -----------------S-RM------------------I------------------------------------QNA- 224 (588)
T ss_dssp -----------------E-EE------------------E------------------------------------ECC-
T ss_pred -----------------e-ee------------------e------------------------------------ccc-
Confidence 0 00 0 000
Q ss_pred CCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 838 KPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF--HPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 838 ~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
| ...|.+++|+ |+.||++++++|++||+.+++......+|.+.|..++| +| ++..|++++.||+ ++|..+
T Consensus 225 -h-~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-- 296 (588)
T 2j04_A 225 -S-RRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-- 296 (588)
T ss_dssp -C-SSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS--
T ss_pred -c-cCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec--
Confidence 4 6778889999 68999999999999999988775555489999999999 99 8999999999999 999987
Q ss_pred eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe
Q 001159 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 994 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 994 (1135)
.++|+||+..+++. |+++++|+...+. +....+ . ..|.+++|||||+.+|++.
T Consensus 297 --------------~~~~spd~~l~a~~--d~~v~lW~~~g~~------l~~~~~-~---~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 --------------ELHVTADNIIAPYL--EKKFKKWSTIWNE------FNNYET-T---LVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------SEEEECCCSSHHHH--HHHHHHTTTTTTS------SSSSCC-E---EEEEEEEECTTSSEEEEEE
T ss_pred --------------cEEECCCceEEEEc--CCEEEEEECCCCc------eeeecc-c---eEEEEEEECCCCCEEEEEE
Confidence 26699999988875 9999999986554 112222 1 5688999999999999853
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.3e-31 Score=304.87 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=218.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
+..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 123347789999999999999999 899999999999999
Q ss_pred cCCCeeeee--ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc----eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 484 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 484 ~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+.+++.... +..|...|.+++|+|++ .+|++++.||.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875544 46799999999998865 8999999999999999998774 223356788999999999999999
Q ss_pred EEecCCCCCCeEEEEEC------------------CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 558 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
+++. ++.|++||+ .+++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9975 889999995 46788888988877 899999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
++.+..+..+.. .|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999987644 79999999999988877 999999999987
No 88
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-31 Score=292.60 Aligned_cols=288 Identities=15% Similarity=0.187 Sum_probs=248.6
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~ 566 (1135)
.+...++.+|.+.|.+++| +++ .+|++++.||.|++||+.+......+..|...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677889999999999999 654 79999999999999999888888888889999999999999999999985 8
Q ss_pred CeEEEEECCCC---eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-
Q 001159 567 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 642 (1135)
Q Consensus 567 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~- 642 (1135)
+.|++|++... +.+..+.+|.. .|.+++| +++++++++.||.|++|| .++.+..+..+.. .+.++.|.|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~--~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA--SVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--CEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--ceeEEEEccC
Confidence 88999998754 56777888877 8999999 578999999999999999 6777777876644 799999988
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1135)
++.++++++.||.|++||.... ..
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~~----------------------------------------------------- 177 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---IK----------------------------------------------------- 177 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---EE-----------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---EE-----------------------------------------------------
Confidence 9999999999999999982110 00
Q ss_pred cccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEe
Q 001159 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKW 802 (1135)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~ 802 (1135)
.+
T Consensus 178 ----------------------------------------------------------------------------~~-- 179 (313)
T 3odt_A 178 ----------------------------------------------------------------------------TF-- 179 (313)
T ss_dssp ----------------------------------------------------------------------------EE--
T ss_pred ----------------------------------------------------------------------------EE--
Confidence 00
Q ss_pred ccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCC
Q 001159 803 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 881 (1135)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h 881 (1135)
. ..| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|
T Consensus 180 -------------------------------~--~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 180 -------------------------------S--GIH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp -------------------------------C--SSC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred -------------------------------e--ccC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 0 003 67788999999998 66666 899999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCcee
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 960 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~ 960 (1135)
...|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.|+.|++||+.+++..
T Consensus 225 ~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 225 ESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred CceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 99999999999 67 588999999999999999999999999999999999999998 667899999999999987643
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.8e-32 Score=305.29 Aligned_cols=298 Identities=12% Similarity=0.152 Sum_probs=237.0
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee-cccCCceeEEEecCC---CCEEEEEeCCCe
Q 001159 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTT---RNRFLAAGDEFQ 611 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~i~~s~~---~~~l~~~~~dg~ 611 (1135)
.+.+|...|.+++|+|++..+++++....+++.|++||+.+++...... +|.. .|.+++|+|+ ++++++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCCCe
Confidence 3466889999999999998777655322248899999999988765544 4544 8999999998 699999999999
Q ss_pred EEEEECCCCc-eEEEEeCCCCCCCcceEE------EcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCC
Q 001159 612 IKFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (1135)
Q Consensus 612 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1135)
|++||+.+++ .+..+..|.. .|.++. |+|++++|++++.||.|++||+.++......+..+...
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------- 162 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE------- 162 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS-------
T ss_pred EEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC-------
Confidence 9999999988 8888876654 789985 57899999999999999999998763233322221110
Q ss_pred CCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEe
Q 001159 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (1135)
Q Consensus 685 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~ 764 (1135)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEEE----EecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 765 RLPDSIAASKVVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 765 ~~~~~~~~~~i~~~~~----~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
+...+ .+++ |+++++.+++++.||.|++||+... ..... . .|
T Consensus 163 ------~~~~v-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~~--~--~~- 208 (357)
T 3i2n_A 163 ------NKRDC-WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRWE--T--NI- 208 (357)
T ss_dssp ------CCCCE-EEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEEE--E--EC-
T ss_pred ------CCCce-EEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceeee--c--CC-
Confidence 11233 6666 7899999999999999999976532 21111 1 15
Q ss_pred CCceEEEEeec---CCCEEEEEe-CCeEEEEECCCccEEEEEe-----CCCCCeEEEEEecCCCc-EEEEEeCCCcEEEE
Q 001159 841 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-----SPPPAATFLAFHPQDNN-IIAIGMEDSSVQIY 910 (1135)
Q Consensus 841 ~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~-~lasg~~dg~v~iw 910 (1135)
...+.+++|+| ++.++++++ ||.|++||+.+++....+. +|...|++++|+| ++. +|++|+.||.|++|
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEe
Confidence 78999999999 999999998 8999999998876655544 8999999999999 777 89999999999999
Q ss_pred Ecccc-------------------eeeEEecCcCCCeEEEEEcCCCCeEE-EEcCCCcEEEEeCCCCc
Q 001159 911 NVRVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 911 d~~~~-------------------~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~~~~ 958 (1135)
|+.++ +.+..+.+|.+.|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 99853 46777889999999999999999998 89999999999998754
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.6e-32 Score=314.57 Aligned_cols=300 Identities=11% Similarity=0.191 Sum_probs=233.9
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC------------cc
Q 001159 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------IS 410 (1135)
Q Consensus 343 ~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 410 (1135)
+.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.........+ .....+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~--------~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEY--------NVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCCE--------EEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccce--------eEecccccccccccccccccccCc
Confidence 34678999999999998 789999999999999998763110000000 0111256787 88
Q ss_pred eEEEEEcCCC--CeEEEEeCCCeEEEEEeCCCCcee------------------------------------ee-eEeec
Q 001159 411 VNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QH-LEIDA 451 (1135)
Q Consensus 411 V~~v~~spd~--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~l~~ 451 (1135)
|.+++|+|++ .+|++++.|+.|++||+.++.... .. ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999997643210 00 11357
Q ss_pred ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-Ceeee-------eecCCCCCeeEEEeeccCCccEEEEEEcCCeE
Q 001159 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1135)
Q Consensus 452 h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i 523 (1135)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++|+.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 88998 799999999984 44444 3668999999999998632 799999999999
Q ss_pred EEEeCcCCCc----eeEecCCCC------------cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeEEEEeecc
Q 001159 524 KAWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGF 586 (1135)
Q Consensus 524 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 586 (1135)
++||+++.+. ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998876 667777765 899999999999999886 38899999997 8888888887
Q ss_pred cCC-----------c---eeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----------------------
Q 001159 587 RKR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------- 629 (1135)
Q Consensus 587 ~~~-----------~---v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 629 (1135)
... . +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 530 1 223899999999999999999999999998876422110
Q ss_pred -------CCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 630 -------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 630 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.....|..++|+|++.+||+++.++ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123578899999999999998874 778864
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=289.11 Aligned_cols=282 Identities=15% Similarity=0.259 Sum_probs=237.0
Q ss_pred eeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC
Q 001159 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~ 428 (1135)
.++|+|||++ +||+|. |++|+|||+.+++.+... .+.+|...|++++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999986 677765 999999999999866421 14578899999999999999999999
Q ss_pred CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeecCCCCCeeEEEeec
Q 001159 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~ 507 (1135)
||+|++||+.+++.+. .+.+|...+.++.+. +. .+++++.++.+++|+...+ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987665 678999988876654 55 8999999999999998865 45677889999999999987
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCce----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEe
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1135)
.+ .++++++.||.|++||+.+++.. .....+...|.+++++|++..++.... ...++.|++||..........
T Consensus 161 ~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 DG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp TS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred CC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 65 89999999999999999876543 355667788999999998776553221 134789999999988877766
Q ss_pred ecccCCceeEEEecCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 584 SGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 584 ~~~~~~~v~~i~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.... .+..+.|+++++.+++++ .|+.|++||+.+++++.++.+|.. .|++++|+|++++|++|+.||+|+|||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 688999999999988765 799999999999999999987754 8999999999999999999999999998
Q ss_pred CCC
Q 001159 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=314.36 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=200.7
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
.+.++|++++|+|+|++||+|+.|+.|++||+.++. ......+.+|...|.+++|+|+++ +|++++.|++|++||+.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC---
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEcC
Confidence 467789999999999999999999999999999862 112236779999999999999998 89999999999999999
Q ss_pred CCe---eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecC-CCCcEEEEEEcCCCCEEEE
Q 001159 486 AGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 486 ~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~~~~~l~~ 558 (1135)
+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 887 667788899999999999854 8999999999999999998773 556666 8999999999999999999
Q ss_pred EecCCCCCCeEEEEECC------------------CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 559 CGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
++. ++.|++||+. .++.+..+ +|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 164 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 985 7899999985 35566667 6665 8999999999999999999999999999998
Q ss_pred ce----EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 621 NM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 621 ~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+. +..+..|.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 238 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 87 666766644 79999999999999988777665 66654
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.4e-32 Score=299.81 Aligned_cols=250 Identities=18% Similarity=0.292 Sum_probs=207.4
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ +. +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999876432 23468899999999999863 67 799999999999
Q ss_pred EEEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCC---
Q 001159 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 552 (1135)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 552 (1135)
+||+++++ .+..+.+|...|.+++|+|+.++.+|++|+.|++|++||++.... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567788999999999999986678999999999999999987643 2345677888999999997
Q ss_pred --------------CCEEEEEecCCCCCCeEEEEECCCC---eEEEEeecccCCceeEEEecCCC----CEEEEEeCCCe
Q 001159 553 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 611 (1135)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~i~~s~~~----~~l~~~~~dg~ 611 (1135)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888875 889999999765 46777888887 89999999986 88999999999
Q ss_pred EEEEECCCCc----eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 612 IKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 612 i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987621 12233333 3479999999999999999999999999975
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.5e-31 Score=306.03 Aligned_cols=273 Identities=21% Similarity=0.317 Sum_probs=238.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|...|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 6678998887 676 789999999999999998876653 6789999999999 889999
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee---eeecCCCCCee
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 501 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 501 (1135)
+|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.++... ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987655 6789999999999974 4 7999999999999999988765 67789999999
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
+++| ++.++++|+.||.|++||+++.+....+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999998 4678999875 8899999999999999
Q ss_pred EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
.+.+|.. .|.+++| +++++++|+.||.|++||+.+++ .+..+..|.. .|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeC
Confidence 9999887 8999998 68899999999999999997765 7777776644 7999999 7889999999
Q ss_pred CCcEEEEEcCCCc
Q 001159 653 DNGIKILANSDGV 665 (1135)
Q Consensus 653 dg~i~iwd~~~~~ 665 (1135)
||.|++||+.+..
T Consensus 404 Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 404 DDTILIWDFLNDP 416 (435)
T ss_dssp SSEEEEEC-----
T ss_pred CCEEEEEECCCCC
Confidence 9999999998763
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.1e-31 Score=296.09 Aligned_cols=279 Identities=9% Similarity=0.098 Sum_probs=239.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC-eE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~-~l 423 (1135)
|.+.|++++|+|+++ +|++|+.||.|+||++.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 889999999999998 688999999999999987762110 001347999999999999999 99
Q ss_pred EEEeCCCeEEEEEe-CCCCceeeeeEeec--ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---------Ceeee
Q 001159 424 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 491 (1135)
Q Consensus 424 as~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~~ 491 (1135)
++|+.||.|++||+ .++.. ..+.+ |...|.+++|+| +. +|++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87643 36778 999999999999 77 899999999999999998 77777
Q ss_pred eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCc--eeEecCCCCcEEEEEEcC-CCCEEEEEecCCCCCC
Q 001159 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1135)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1135)
.+. |...|.+++|+|+ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 777 8999999999864 399999999999999988 443 334556778999999999 9999999975 88
Q ss_pred eEEEEECCCC------eEEEEeecccC--------CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCC
Q 001159 568 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGL 632 (1135)
Q Consensus 568 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 632 (1135)
.|++|++... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~- 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED- 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-
Confidence 9999999887 77788887743 37999999999999999999999999999999999888765 44
Q ss_pred CCcceEEEcCCCCEEEEEECCCc-EEEEE
Q 001159 633 PASPRLRFNKEGSLLAVTTSDNG-IKILA 660 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg~-i~iwd 660 (1135)
.|.+++ |++++|++++.||. .+.+.
T Consensus 296 -~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 -SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred -CceEec--CCCCeEEEEecCCccccccc
Confidence 788888 99999999999998 44443
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.8e-31 Score=305.26 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=242.9
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-CCCeEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d~~~las 425 (1135)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35567899999876777789999999999965433211 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEeCCCCce----eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee--cCCCCC
Q 001159 426 AFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAP 499 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 499 (1135)
|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 233478899999999999999843 8999999999999999999999999 889999
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCc-EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
|.+++|+|++ .+|++++.||.|++||+++.+....+ ..|... +.+++|+|++++|+++. +...++.|++||++++
T Consensus 179 v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBC
T ss_pred eEEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCccc
Confidence 9999999854 89999999999999999998888777 667664 89999999999988873 1123889999999986
Q ss_pred eE-EEEeecccCCceeEEEecCCCCEEEE-EeCCCeEEEEECCCCce-EEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 578 AI-KRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 578 ~~-~~~~~~~~~~~v~~i~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
.. +..........+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 64 33444333337999999999999975 55799999999999884 555555444568999999999988764 566
Q ss_pred cEEEEEcCCC
Q 001159 655 GIKILANSDG 664 (1135)
Q Consensus 655 ~i~iwd~~~~ 664 (1135)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999999876
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-30 Score=296.95 Aligned_cols=281 Identities=16% Similarity=0.251 Sum_probs=226.6
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..+.+++ ..+++++.||.|++|++.. +......... | ...|.+++|+|++++|
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~~--~-~~~v~~v~~s~~~~~l 149 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADS----------------------GSVSALAETD--E-STYVASVKWSHDGSFL 149 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTT----------------------CCEEEEEECC--T-TCCEEEEEECTTSSEE
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCC----------------------CcEeEeeecC--C-CCCEEEEEECCCCCEE
Confidence 4566654 5588999999999997643 3222221222 5 8899999999999999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~-~~~~~~~l~~h~~~i~~l~~s 934 (1135)
++|+ ||.|++||+.+++.+..+.+|...|.+++|++ ++|++|+.||.|++||+. .+..+..+.+|.+.|.+++|+
T Consensus 150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 9998 89999999999999999999999999999964 699999999999999999 567788899999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE-Ee---cCeEEEEec-CCceee
Q 001159 935 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQISVYDS-KLECSR 1009 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~---d~~v~vwd~-~~~~~~ 1009 (1135)
|++++|++++.|+.|++||+.+++.. ....+|. ..|.+++|+|++..+++ ++ |+.|++||+ ++..+.
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPK-----FTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEE-----EEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCcc-----EEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 99999999999999999999987643 2333444 67999999998765554 53 899999999 777766
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEE--EeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYA--GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~--~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
.+. |...|.+++|+|++++|++ |+.||.|++|++.+++........ .+...+.++.|+| ++.+|+
T Consensus 299 ~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~-dg~~l~ 365 (401)
T 4aez_A 299 TVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP--------AHDTRVLYSALSP-DGRILS 365 (401)
T ss_dssp EEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE--------CCSSCCCEEEECT-TSSEEE
T ss_pred EEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec--------CCCCCEEEEEECC-CCCEEE
Confidence 653 3678999999999999998 558999999999997666543211 1224556889999 789999
Q ss_pred EEecCCcEEEEecCCCccccC
Q 001159 1088 LGMSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~~~~~~~ 1108 (1135)
+|+.||.|++|++.+++....
T Consensus 366 s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EECTTSEEEEEECCC------
T ss_pred EEeCCCcEEEEECCCCccccc
Confidence 999999999999998875443
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-31 Score=295.13 Aligned_cols=249 Identities=15% Similarity=0.209 Sum_probs=205.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| ++++
T Consensus 12 H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp --CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSSC
T ss_pred ccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCCE
Confidence 899999999999998 789999999999999987643110 12678999999999986 4899
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe---eeeeecCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEGHE 497 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~ 497 (1135)
||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++. ....+.+|.
T Consensus 74 l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp EEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSSS
T ss_pred EEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecccc
Confidence 99999999999999987642 223367789999999999998 66 89999999999999998763 245677899
Q ss_pred CCeeEEEeeccC---------------CccEEEEEEcCCeEEEEeCcCCC---ceeEecCCCCcEEEEEEcCCC----CE
Q 001159 498 APVYSVCPHHKE---------------SIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADG----TR 555 (1135)
Q Consensus 498 ~~v~~i~~~~~~---------------~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~~~----~~ 555 (1135)
..|.+++|+|.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++ ++
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 999999999862 14689999999999999997553 445678899999999999987 78
Q ss_pred EEEEecCCCCCCeEEEEECCCC---e-EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCC
Q 001159 556 LFSCGTSKEGESHLVEWNESEG---A-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~---~-~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1135)
|++++. |+.|++||+.+. . ....+..|.. .|.+++|+|++++|++++.|++|++|+...
T Consensus 231 las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 231 IASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999885 889999998762 1 2234455555 899999999999999999999999999763
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.6e-30 Score=295.36 Aligned_cols=294 Identities=16% Similarity=0.220 Sum_probs=242.0
Q ss_pred CCcceeeEEeec-CCCCeeEEEEecC---CCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCC
Q 001159 333 DDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 333 d~~~~~~~~~~~-h~~~V~~v~~sp~---g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
+..+.+.+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h 85 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH 85 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence 345566777777 9999999999999 46 799999999999999987 433211 25679
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEE--ecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~--s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
...|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++||++
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC
Confidence 999999999999999999999999999999987644 35679999999999 88887 89999999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCCCE----EEEE
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFSC 559 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~----l~~~ 559 (1135)
+++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... ++++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999999888664 566666653 578999999999999998766544322 23445666666665544 8887
Q ss_pred ecCCCCCCeEEEEECCCC---eEEEEeecccCC-----------ceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001159 560 GTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
+. ++.|++||++.. ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++++..
T Consensus 235 ~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 235 SI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp ET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 74 889999999987 567777777643 599999999999999999999999999999999998
Q ss_pred EeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC
Q 001159 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 662 (1135)
+..+.. .|.+++|+|++++|++++.|+..+.|++.
T Consensus 311 ~~~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 311 SEQLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ecCCCC--CceEEEECCCCCeEEEEeccccccccccc
Confidence 886644 89999999999999999998865555443
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.8e-30 Score=302.10 Aligned_cols=250 Identities=13% Similarity=0.210 Sum_probs=208.6
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCc--------eeeeeEeeccc------------CCEEEEEEecCC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 465 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~v~~s~d~ 465 (1135)
.|.+.|++++|+|+|++||+|+.||.|+|||+.++.. ......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999997652 22344778998 889999999998
Q ss_pred --CeEEEEEEcCCCcEEEEEcCCCeee---------------------------------------ee-ecCCCCCeeEE
Q 001159 466 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 503 (1135)
Q Consensus 466 --~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i 503 (1135)
. .|++++.|++|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 6 7999999999999998775432 12 36799999999
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE--------ecCCCCcEEEEEEcCCC-CEEEEEecCCCCCCeEEEEEC
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
+|+|++ .+|++| .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 999854 899998 899999999985443332 55788899999999998 89999885 889999999
Q ss_pred CCCeE----EEEeecccC-----------CceeEEEecCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCC----
Q 001159 575 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 634 (1135)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1135)
++++. +..+.++.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..|.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788888764 27999999999999999998 9999999997 888888887643111
Q ss_pred ---------cceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 635 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 635 ---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
+..++|+|++++|++++.||.|++||+.++.
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 2349999999999999999999999999873
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=1.1e-29 Score=293.48 Aligned_cols=280 Identities=17% Similarity=0.268 Sum_probs=229.6
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..++|++++ +++.+.|++|+|||.. +|.+... +....| ...|++++|+|||++|
T Consensus 109 ~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 109 NLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEYISSVAWIKEGNYL 162 (420)
T ss_dssp BCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCCEEEEEECTTSSEE
T ss_pred eeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCcEEEEEECCCCCEE
Confidence 778999865 4455569999999653 4433321 222236 7889999999999999
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eeeEEecCcCCCeEEEEEc
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFS 934 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~i~~l~~s 934 (1135)
|+|+ ||+|+|||+.+++++..+.+|...+.++++++ .+|++|+.|+.+++||.... ..+..+.+|...+..+.|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 9999 99999999999999999999999999988864 69999999999999998864 4567889999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEE-EEE---ecCeEEEEec-CCceee
Q 001159 935 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL-LVV---HESQISVYDS-KLECSR 1009 (1135)
Q Consensus 935 ~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~~~---~d~~v~vwd~-~~~~~~ 1009 (1135)
|+++++++++.|+.+++|+..+++.... .+.....+. ..|..++|+|++..+ +++ .|+.|++||+ ++.+..
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred CCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 9999999999999999999988764322 222333444 689999999987644 443 4899999999 777666
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
.+.. ...+.++.|+++++.+++++ .||.|+|||+.+++++.++.+|. ..+.+++|+| ||.+|+
T Consensus 316 ~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~----------~~V~~l~~sp-dg~~l~ 380 (420)
T 4gga_A 316 AVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT----------SRVLSLTMSP-DGATVA 380 (420)
T ss_dssp EEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS----------SCEEEEEECT-TSSCEE
T ss_pred eecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEcC-CCCEEE
Confidence 6543 45799999999999988765 79999999999999999888653 4567899999 789999
Q ss_pred EEecCCcEEEEecCCCc
Q 001159 1088 LGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~~~ 1104 (1135)
||+.||+|++||+.+.+
T Consensus 381 S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 381 SAAADETLRLWRCFELD 397 (420)
T ss_dssp EEETTTEEEEECCSCSS
T ss_pred EEecCCeEEEEECCCCC
Confidence 99999999999997654
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=280.35 Aligned_cols=282 Identities=15% Similarity=0.240 Sum_probs=225.9
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1135)
..+++||+++ .|+++. |++|++||+.+++.++.+..+. ...|.+++|+|+++++++|+.||+|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4678999886 666654 7899999999999998876542 23799999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccc
Q 001159 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1135)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 702 (1135)
+..+..|.. .+ ..+++++..+++++.++.+++|+..........+.+
T Consensus 102 ~~~~~~h~~--~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 148 (318)
T 4ggc_A 102 LRNMTSHSA--RV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG----------------------------- 148 (318)
T ss_dssp EEEEECCSS--CE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC-----------------------------
T ss_pred EEEecCccc--eE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC-----------------------------
Confidence 999987744 34 456667789999999999999998765322222221
Q ss_pred ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEe
Q 001159 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYT 782 (1135)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 782 (1135)
|...+ ..+.++
T Consensus 149 --------------------------------------------------------------------~~~~~-~~~~~~ 159 (318)
T 4ggc_A 149 --------------------------------------------------------------------HSQEV-CGLRWA 159 (318)
T ss_dssp --------------------------------------------------------------------CSSCE-EEEEEC
T ss_pred --------------------------------------------------------------------ccCce-EEEEEc
Confidence 34455 889999
Q ss_pred cCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEE---EE
Q 001159 783 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM---SA 859 (1135)
Q Consensus 783 ~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la---~~ 859 (1135)
++++++++++.||.|++||+...+.... ... ... .| ...|.+++++|++..++ ++
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~------------------~~~-~~~--~~-~~~v~~~~~~~~~~~~~~~~~~ 217 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWV------------------PLQ-TFT--QH-QGAVKAVAWCPWQSNVLATGGG 217 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSC------------------CSE-EEC--CC-CSCEEEEEECTTSTTEEEEEEC
T ss_pred CCCCEEEEEecCcceeEEECCCCccccc------------------cee-eec--cc-CCceEEEEecCCCCcEEEEEec
Confidence 9999999999999999998764321100 000 011 14 78899999999776443 33
Q ss_pred e-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 860 S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 860 ~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
+ ++.|++||........... +...+..++|+| ++..+++++ .|+.|++||+.+++++.++.+|.+.|++|+|+||
T Consensus 218 ~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 218 TSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 3 6899999999888776655 777899999999 666666554 7999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEeCCCC
Q 001159 937 LNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 937 ~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
+++|||+|.|++|+|||+...
T Consensus 296 g~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SSCEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999764
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.1e-30 Score=288.78 Aligned_cols=253 Identities=12% Similarity=0.167 Sum_probs=217.8
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEec--CCCeEEEEEEcCCCcE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i 479 (1135)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| ++. +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47799999999999999999999999999999999976432 34446789999999999999 577 89999999999
Q ss_pred EEEEcCCC---------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec------------
Q 001159 480 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 538 (1135)
Q Consensus 480 ~iwd~~~~---------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------ 538 (1135)
++||+.++ +.+..+.+|...|.+++|+|+.++.++++++.||.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888899999999999997335899999999999999998876544322
Q ss_pred -CCCCcEEEEEEcCC---CCEEEEEecCCCCCCeEEEEECCCCeE--EEEeecccCCceeEEEecCCC----CEEEEEeC
Q 001159 539 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 608 (1135)
Q Consensus 539 -~~~~~i~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~i~~s~~~----~~l~~~~~ 608 (1135)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889998875 77888888877765 677778777 89999999998 79999999
Q ss_pred CCeEEEEECCCC----------------------------------------------ceEEEEeCCCCCCCcceEEEcC
Q 001159 609 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
||.|++||+..+ +.+..+..|. ..|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN--GEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS--SCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc--ccEEEEEEcC
Confidence 999999999875 4555555553 4799999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999887
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.5e-29 Score=293.88 Aligned_cols=233 Identities=17% Similarity=0.305 Sum_probs=210.1
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ +|++|+.||+|++||+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEECC
Confidence 47778999887 89999999999999999999987655 77899999999999 677 89999999999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce---eEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
+++.+..+.+|...|.+++|++ ..+++|+.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~- 274 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG- 274 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET-
T ss_pred CCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC-
Confidence 9999999999999999999953 68999999999999999987765 567788999999999 7889999875
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
++.|++||+++++.+..+.+|.. .|.++.++ ++++++|+.||.|++||+.+++.+..+..|.. .|.+++|
T Consensus 275 ---dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~-- 344 (435)
T 1p22_A 275 ---DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF-- 344 (435)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--
T ss_pred ---CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--
Confidence 88999999999999999999887 89999884 68999999999999999999999999987654 7899988
Q ss_pred CCCEEEEEECCCcEEEEEcCCC
Q 001159 643 EGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.+|++|+.||.|++||+.++
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHH
T ss_pred cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998654
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=284.87 Aligned_cols=260 Identities=11% Similarity=0.145 Sum_probs=219.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCe
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~ 422 (1135)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |+++
T Consensus 10 H~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCCE
Confidence 899999999999998 789999999999999987643211 0112568999999999999 6999
Q ss_pred EEEEeCCCeEEEEEeCCCCc------eeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 423 LGVAFSKHIVHLYTYNPTGE------LRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
|++|+.||.|++||+.++.. ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++.+..+.
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999988642 1334467889999999999999 88 89999999999999999887655443
Q ss_pred -------------CCCCCeeEEEeecc-CCccEEEEEEcCCeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCC----C
Q 001159 495 -------------GHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG----T 554 (1135)
Q Consensus 495 -------------~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~----~ 554 (1135)
+|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 68889999999986 1247999999999998888777665 45677888999999999998 7
Q ss_pred EEEEEecCCCCCCeEEEEECCCC----------------------------------------------eEEEEeecccC
Q 001159 555 RLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFRK 588 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~~ 588 (1135)
+|++++. |+.|++||++++ +.+..+.+|..
T Consensus 232 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 307 (351)
T 3f3f_A 232 LIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307 (351)
T ss_dssp EEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSS
T ss_pred EEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc
Confidence 8888875 889999999875 66777888877
Q ss_pred CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 589 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 308 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 308 -EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred -cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 89999999999999999999999999999887665543
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=289.48 Aligned_cols=258 Identities=15% Similarity=0.210 Sum_probs=214.3
Q ss_pred eEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCC--ccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 339 ~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
++..+. |.+.|++++|+|+|+ +||+|+.||.|+|||+.. ++.+. .+.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEE
Confidence 445566 999999999999998 789999999999999974 33322 2678999999999
Q ss_pred EcCC--CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe--e
Q 001159 416 WGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--K 489 (1135)
Q Consensus 416 ~spd--~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~ 489 (1135)
|+|+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 99999999999999999998752 233367789999999999999 88 89999999999999998873 3
Q ss_pred eeeecCCCCCeeEEEeeccC-----------CccEEEEEEcCCeEEEEeCcCCCce----eEecCCCCcEEEEEEcCC--
Q 001159 490 QYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD-- 552 (1135)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~~-- 552 (1135)
...+.+|...|.+++|+|.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45667899999999999842 4589999999999999999876643 466778999999999999
Q ss_pred -CCEEEEEecCCCCCCeEEEEECCCCe---EEEEee--cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEE
Q 001159 553 -GTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS--GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1135)
Q Consensus 553 -~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~--~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1135)
+++|++++. ++.|++||+.++. ....+. .+.. .|.+++|+|++++|++++.||.|++|++.......
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 899999875 8899999999864 222222 2444 79999999999999999999999999998654433
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=289.23 Aligned_cols=253 Identities=19% Similarity=0.268 Sum_probs=218.6
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~i 481 (1135)
+.+|...|++++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ +. +|++|+.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998432 2333477899999999999987 77 8999999999999
Q ss_pred EEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcC------
Q 001159 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 551 (1135)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 551 (1135)
||+.+++ .+..+.+|...|.+++|+|+.++.++++++.||.|++||+.... ....+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999997435899999999999999998874 3446678888999999999
Q ss_pred -------CCCEEEEEecCCCCCCeEEEEECCCCe----EEEEeecccCCceeEEEecCC---CCEEEEEeCCCeEEEEEC
Q 001159 552 -------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 552 -------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iwd~ 617 (1135)
++.++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ +++|++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999975 8899999998754 4567777776 8999999999 899999999999999999
Q ss_pred CCCc---eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 618 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 618 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9865 3333344334558999999999999999999999999998754
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.8e-29 Score=281.88 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=211.1
Q ss_pred ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 404 ~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+|.+.|++++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987633333356689999999999999872 378999999999999
Q ss_pred c-CCCeeeeeecC--CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC---------CCceeEecCCCCcEEEEEEcC
Q 001159 484 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 484 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 551 (1135)
+ .+++. ..+.+ |...|.+++|+| + .++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999998 4 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEecCCCCCCeEEEEECCC-CeE--EEEeecccCCceeEEEecC-CCCEEEEEeCCCeEEEEECCCC------c
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------N 621 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~i~~s~-~~~~l~~~~~dg~i~iwd~~~~------~ 621 (1135)
++ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|+++.. +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777764 88999999998 543 233334444 899999999 9999999999999999999887 7
Q ss_pred eEEEEeCCCC-------CCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 622 MLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 622 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 7788877643 347999999999999999999999999999877
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.9e-28 Score=258.80 Aligned_cols=293 Identities=16% Similarity=0.163 Sum_probs=210.4
Q ss_pred EEEEEEe-cCCCeEEEEEEcCCCcEEEEEcCCC---eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 456 VNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 456 v~~v~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
+.++.|- +..+.+.+++++ ...|++|+..++ ++++++..|+.+|..+.+.|+.-+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5666663 345555788888 568999999999 8999999999999999999875422222211
Q ss_pred CceeEecCCCCcEEEEEEcCC----CCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe
Q 001159 532 GSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1135)
Q Consensus 532 ~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~ 607 (1135)
..+...|.+++++|| ++.+++++. .+.+|++. +++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~-----------------------~g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLT-----------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEET-----------------------TTEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecC-----------------------CCcEEEecc
Confidence 224457889999999 889998753 26667543 333444432
Q ss_pred --CCCeEEEEEC-CCCceEEEEeCCCCCCCcceEEEcC---CCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccC
Q 001159 608 --DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1135)
Q Consensus 608 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 681 (1135)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 5788888888 44777777777755 688899998 7899999999999999999998 55555543321
Q ss_pred CCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccce
Q 001159 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1135)
Q Consensus 682 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~ 761 (1135)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCC
Q 001159 762 KALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 841 (1135)
Q Consensus 762 ~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 841 (1135)
+...+ .+++|+|+|..+++++.+..
T Consensus 225 ---------~v~~v-~~vafSpdG~~lvs~s~~~~--------------------------------------------- 249 (356)
T 2w18_A 225 ---------YQASV-CHKAYSEMGLLFIVLSHPCA--------------------------------------------- 249 (356)
T ss_dssp -----------CCC-EEEEEEETTEEEEEEC-------------------------------------------------
T ss_pred ---------ceeee-EEEEECCCCCEEEEeccCCC---------------------------------------------
Confidence 11123 78899999998777654311
Q ss_pred CceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEE-----eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 842 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
...+++|+ |++|++||..+++++..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.++
T Consensus 250 -----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 250 -----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp -------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC
T ss_pred -----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC
Confidence 11467787 899999999999988776 367666544444 3679999999999999999999
Q ss_pred eeeEEecCcCCCeE-EEEEcCCCCeEEEEcCCCcEEEEeC
Q 001159 916 EVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 954 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iwd~ 954 (1135)
+++.++.+|.+.+. +++|||||++|++|+.|++|+|||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999988765 5899999999999999999999985
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=287.72 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=234.9
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc---ccccCCceeeccccc----------------------------
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVWDISAA---------------------------- 395 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 395 (1135)
.++.+++|+|+|+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 56655 47899999999988 3322 211000
Q ss_pred ------------ccchhhhhccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEeC--CCCceeeeeEeecccCCEEEEE
Q 001159 396 ------------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIA 460 (1135)
Q Consensus 396 ------------~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~ 460 (1135)
....+.....+|.+.|.+++|+|++++| |+|+.||.|++||+. +++.+.... ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0001111234677789999999999996 889999999999999 776655321 136778999999
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEcCCCeeee----eecCCCCCeeEEEeecc-CCccEEEEEEcCCeEEEEeCcCCCcee
Q 001159 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~ 535 (1135)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+|+ ..+.+|++++.|++|++||+.+.....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 78889999999999997 224899999999999999999888777
Q ss_pred E-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc------------------------CCc
Q 001159 536 D-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRS 590 (1135)
Q Consensus 536 ~-~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1135)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 56889999999999 9999999985 8899999999999988886431 236
Q ss_pred eeEEEecCCCCEEEEEe-CCCeEEEEEC--CCC---ceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC------CCcEEE
Q 001159 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKI 658 (1135)
Q Consensus 591 v~~i~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i 658 (1135)
|..++|+|+++++++++ .|+.|++|++ ..+ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999998 8999999999 555 666777765 36899999996533333332 456888
Q ss_pred EEcCC
Q 001159 659 LANSD 663 (1135)
Q Consensus 659 wd~~~ 663 (1135)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87653
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.5e-29 Score=282.03 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=234.7
Q ss_pred EeCcCCCceeEecCCCCcEEEEEEcCC---CCEEEEEecCCCCCCeEEEEECCC-CeEE-EEeecccCCceeEEEecCCC
Q 001159 526 WLYDYLGSRVDYDAPGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESE-GAIK-RTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~-~~~~-~~~~~~~~~~v~~i~~s~~~ 600 (1135)
|+.........+..|...|.+++|+|+ |++|++++. ++.|++||+.+ +..+ ..+.+|.. .|.+++|+|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~ 98 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW----ANDVRCWEVQDSGQTIPKAQQMHTG-PVLDVCWSDDG 98 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEET----TSEEEEEEECTTSCEEEEEEEECSS-CEEEEEECTTS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECC----CCcEEEEEcCCCCceeEEEeccccC-CEEEEEECcCC
Confidence 344555566677889999999999999 599999875 88999999997 5555 77778777 89999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE--cCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccc
Q 001159 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 678 (1135)
++|++++.||.|++||+.+++.+.... + ...|.+++| ++++.+|++++.||.|++||+.++ +....+..+
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~---- 170 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQ-H--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-NPMMVLQLP---- 170 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-SCSEEEECS----
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeecc-c--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-cEEEEEecC----
Confidence 999999999999999999998777543 3 347999999 899999999999999999999876 222222111
Q ss_pred ccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCc
Q 001159 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDP 758 (1135)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~ 758 (1135)
T Consensus 171 -------------------------------------------------------------------------------- 170 (368)
T 3mmy_A 171 -------------------------------------------------------------------------------- 170 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCC
Q 001159 759 SQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 838 (1135)
Q Consensus 759 ~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1135)
..+ .++.+.+ ..+++++.++.+.+|++..... ........
T Consensus 171 --------------~~~-~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~-- 210 (368)
T 3mmy_A 171 --------------ERC-YCADVIY--PMAVVATAERGLIVYQLENQPS---------------------EFRRIESP-- 210 (368)
T ss_dssp --------------SCE-EEEEEET--TEEEEEEGGGCEEEEECSSSCE---------------------EEEECCCS--
T ss_pred --------------CCc-eEEEecC--CeeEEEeCCCcEEEEEeccccc---------------------hhhhcccc--
Confidence 112 4444443 4578888899999998753211 00000111
Q ss_pred CCCCceEEEEeecCCCE----EEEEe-CCeEEEEECCCc---cEEEEEeCCCC------------CeEEEEEecCCCcEE
Q 001159 839 PTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF---KVMTMFMSPPP------------AATFLAFHPQDNNII 898 (1135)
Q Consensus 839 h~~~~i~~l~~s~dg~~----la~~~-dg~i~vwd~~~~---~~~~~~~~h~~------------~v~~l~~sp~~~~~l 898 (1135)
+ ...+.++++.++... +++++ ||.|++||+... ..+..+.+|.. .|++++|+| ++++|
T Consensus 211 ~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 288 (368)
T 3mmy_A 211 L-KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTL 288 (368)
T ss_dssp C-SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCE
T ss_pred c-cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEE
Confidence 2 556677777776655 88888 999999999987 66777887776 799999999 89999
Q ss_pred EEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 899 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 899 asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-.
T Consensus 289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 289 ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9999999999999999999999999999999999999999999999998666555443
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.9e-29 Score=289.84 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=209.5
Q ss_pred ceEEEEEcCCCCeEE-EEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEec-CCCeEEEEEEcCCCcEEEEEcCC
Q 001159 410 SVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA 486 (1135)
Q Consensus 410 ~V~~v~~spd~~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~ 486 (1135)
....++++|+...++ +++.||.|+||++...... .....+.+|.+.|.+++|+| ++. +|++|+.|++|++||+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 345688999876554 5788999999999664322 23335779999999999999 787 899999999999999998
Q ss_pred C-------eeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe--cCCCCcEEEEEEcCCCCEEE
Q 001159 487 G-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+ +.+..+.+|...|.+++|+|++. .+|++++.||.|++||+++.+....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 8 66788999999999999998642 59999999999999999999888888 78999999999999999999
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEe-ecccCCceeEEEecCCCCEEEEE---eCCCeEEEEECCCCce-EEEEeCCCCC
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGGL 632 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~i~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 632 (1135)
+++. ++.|++||+++++.+..+ .+|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9975 889999999999999998 67776558999999999999998 7999999999998664 333332 223
Q ss_pred CCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001159 633 PASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 664 (1135)
..+.+++|+|++++|++++ .||.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 4689999999999997554 6999999999877
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.4e-28 Score=276.37 Aligned_cols=283 Identities=13% Similarity=0.143 Sum_probs=217.5
Q ss_pred eeEEeec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 338 ~~~~~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
+++.+.. |.+.|++++|||||+ +||+|+.+| ++||++.+++.... .+...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEE
Confidence 3444445 889999999999998 788888665 78999987765432 12225888999
Q ss_pred cCCCCeEE-EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-eeeeeec
Q 001159 417 GPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 494 (1135)
Q Consensus 417 spd~~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 494 (1135)
+++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEec
Confidence 99998885 56778999999999987655 444 67799999998764 33333 789999999998 7777766
Q ss_pred CCCCCeeEEEeeccCCccEEEE--EEcCCeEEEEeCcCCC----------------ceeEecCCCCcEEEEEEcCCCCEE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 4 444555655 34554 6899999999998765 256788999999999999999999
Q ss_pred EEEecCCCCCCe-EEEEECCCCeEEEEee-c-ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceE--EE------
Q 001159 557 FSCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TT------ 625 (1135)
Q Consensus 557 ~~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~------ 625 (1135)
++++. |++ |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|++|++||+...... ..
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99985 887 9999999999999998 5 555 8999999999999999999999999999765311 11
Q ss_pred ------------EeCC-CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 626 ------------VDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 626 ------------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+... ........++|+++++.|++++.||.+++|++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123467999999999999999999999998765
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=9.8e-27 Score=266.53 Aligned_cols=328 Identities=12% Similarity=0.119 Sum_probs=258.4
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCcCCCceeEecCCCCcEEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 547 (1135)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999988665 48999998865 555 677799999999999888777776555 89999
Q ss_pred EEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEE-EEEeCCCeEEEEECCCCceEEEE
Q 001159 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1135)
+|+|++++|++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999876653 36899999999999988887654 58999999999987 67778999999999999998888
Q ss_pred eCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccc
Q 001159 627 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 705 (1135)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++. ...
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~------------------------------------ 194 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VID------------------------------------ 194 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEE------------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEE------------------------------------
Confidence 7653 46899999999887 566778999999986551 000
Q ss_pred cCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCC
Q 001159 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSG 785 (1135)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg 785 (1135)
.
T Consensus 195 ------------------------------------------------------------------------~------- 195 (391)
T 1l0q_A 195 ------------------------------------------------------------------------T------- 195 (391)
T ss_dssp ------------------------------------------------------------------------E-------
T ss_pred ------------------------------------------------------------------------E-------
Confidence 0
Q ss_pred cceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe----C
Q 001159 786 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----G 861 (1135)
Q Consensus 786 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~----d 861 (1135)
.. + ...+.+++|+|+|+++++++ +
T Consensus 196 --------------~~-------------------------------------~-~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 196 --------------VK-------------------------------------V-EAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp --------------EE-------------------------------------C-SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred --------------Ee-------------------------------------c-CCCccceEECCCCCEEEEEecCcCC
Confidence 00 1 34566788888888887775 5
Q ss_pred CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEcccceeeEEecCcCCCeE---EEEEcC--
Q 001159 862 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLAFSP-- 935 (1135)
Q Consensus 862 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~i~---~l~~s~-- 935 (1135)
+.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 224 ~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (391)
T 1l0q_A 224 NTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQ 301 (391)
T ss_dssp CEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSC
T ss_pred CcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccc
Confidence 889999999999988888765 589999999 77766 6778899999999999999988877655421 123332
Q ss_pred ----------CC----------CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 936 ----------TL----------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 936 ----------d~----------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
+. ..+...+.|.++++|++..+.... .......|+++|.|.+.
T Consensus 302 ~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 302 PVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK--------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC--------------SSSCEECCSSCEEEEEE
T ss_pred ccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC--------------cCCCeEEeCCCceEEEE
Confidence 21 235566678899999998776211 11234679999998876
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.7e-27 Score=277.15 Aligned_cols=305 Identities=8% Similarity=0.047 Sum_probs=248.7
Q ss_pred CccccCCCc--ceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhc
Q 001159 327 PNVYSQDDL--TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 327 ~~~~~~d~~--~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
..+|.+|.. ..+.+..+.....+.+++|+|++ .++++++.++.|++||+.+++..... ....+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~--------------~~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLS--------------PPEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEEC--------------CCHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeec--------------Ccccc
Confidence 355555553 33667777766778899999955 58888989999999999988765321 11124
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.+|...|.+++|+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 5799999999999999999999999999999999877655 56688999999999999984 4467778999999999
Q ss_pred CCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE--------cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
.+++.+..+..+ ..+.+++|+|++ ..+++++ .||.|++||+.+++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999998888754 458999998865 7888887 5899999999877655544 344578899999999877
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeC---------------CCeEEEEECCCCc
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMN 621 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1135)
++.+. .++.|++||+.+++.+..+.. .. .+.+++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV-FD-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC-CC-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 65542 488999999999998888763 33 6899999999999988875 5799999999999
Q ss_pred eEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001159 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 662 (1135)
.+..+..+ ..+.+++|+|++++|++++. |+.|++|++.
T Consensus 393 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888763 25899999999999998875 9999999975
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.4e-28 Score=282.88 Aligned_cols=266 Identities=15% Similarity=0.238 Sum_probs=217.4
Q ss_pred eEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 339 ~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
....+.|.+.|++++|+|++..++|+|+.+|.|+||++.+....... .....+...+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45566699999999999985568999999999999999762111000 000001122668999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEeCCCCc----eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC---eee
Q 001159 419 DGL-MLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 490 (1135)
Q Consensus 419 d~~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 490 (1135)
+++ +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223467789999999999995443 8999999999999999987 577
Q ss_pred eeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-CCceeEecCCCCcEEEEEEcCCCC-EEEEEecCCCCCCe
Q 001159 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESH 568 (1135)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~~ 568 (1135)
..+..|...|.+++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++ +|++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 78889999999999998653 4799999999999999998 455678888999999999999996 4667764 889
Q ss_pred EEEEECCC--------------CeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCCC
Q 001159 569 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1135)
|++||+.. ...+..+.+|.. .|.+++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999986 366777778776 899999999998 8999999999999998753
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.6e-28 Score=279.73 Aligned_cols=316 Identities=16% Similarity=0.249 Sum_probs=239.5
Q ss_pred eeEEeecCCCCeeEEEEecCCC---------eEEEEEec----cceEEEEEcCCcccccc----------CCceeecccc
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQQ---------TILLVGTN----VGDISLWEVGSRERLAH----------KPFKVWDISA 394 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g~---------~lla~g~~----dg~i~iwd~~~~~~~~~----------~~~~~~~~~~ 394 (1135)
..+.+..-.-+..++.|.|+.. ..+++|+. ...|.|+++.-...... ..+..+....
T Consensus 37 ~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~ 116 (430)
T 2xyi_A 37 DLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVC 116 (430)
T ss_dssp EEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC-------------------------
T ss_pred HHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCC
Confidence 3444444455678888888752 35667764 34677776541000000 0000000000
Q ss_pred cccchhhhhccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCC-------CceeeeeEeecccCCEEEEEEecCCC
Q 001159 395 ASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNK 466 (1135)
Q Consensus 395 ~~~~~~~~~~~~h~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~v~~s~d~~ 466 (1135)
..+......+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|.+++|+|++.
T Consensus 117 --~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 117 --GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp ---CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred --CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 11112234579999999999997 789999999999999999862 11233447889999999999999987
Q ss_pred eEEEEEEcCCCcEEEEEcCCCee-------eeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC---CceeE
Q 001159 467 QLCIVTCGDDKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVD 536 (1135)
Q Consensus 467 ~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~ 536 (1135)
. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+|.. +.++++++.||.|++||+++. .....
T Consensus 195 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 195 G-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp T-EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred C-eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 6 799999999999999987432 45677899999999999853 379999999999999999987 45667
Q ss_pred ecCCCCcEEEEEEcCCCC-EEEEEecCCCCCCeEEEEECCC-CeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEE
Q 001159 537 YDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIK 613 (1135)
Q Consensus 537 ~~~~~~~i~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~ 613 (1135)
+..|...|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|.. .|.+++|+|+++ .+++++.||.|+
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEE
Confidence 778999999999999998 4667764 88999999998 567888888877 899999999985 688999999999
Q ss_pred EEECCC--------------CceEEEEeCCCCCCCcceEEEcCCCC-EEEEEECCCcEEEEEcCCC
Q 001159 614 FWDMDN--------------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 614 iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 664 (1135)
+||+.. .+.+..+..| ...|.+++|+|+++ ++++++.||.|+||++...
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999987 2455555554 34799999999999 9999999999999998654
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.4e-27 Score=275.82 Aligned_cols=337 Identities=12% Similarity=0.143 Sum_probs=256.4
Q ss_pred cceEEEE---EcCCCCeEEEEe--------------CCCeEEEEEeC--CCCceeeeeEeecccCCEEEEEEecCCCeEE
Q 001159 409 ISVNRCV---WGPDGLMLGVAF--------------SKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 409 ~~V~~v~---~spd~~~las~~--------------~dg~i~iwd~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~ 469 (1135)
..+..++ |+|+++.++..+ .++.+.+|.++ ++. ......+..+ ..+.+++|+|++. +
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~ 136 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--L 136 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--E
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--E
Confidence 3456666 777766655432 23323455443 332 2223344444 4466999999655 7
Q ss_pred EEEEcCCCcEEEEEcCCCeeee-----eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcE
Q 001159 470 IVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 544 (1135)
+++++.|+.|++||+.+++.+. .+.+|...|.+++|++++ .++++++.|+.|++||+++.+....+..+...+
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 214 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS 214 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence 8889999999999999998887 456899999999997754 899999999999999999988888888888899
Q ss_pred EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe--------CCCeEEEEE
Q 001159 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWD 616 (1135)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~--------~dg~i~iwd 616 (1135)
.+++|+|+++.+++++. .++.|++||+++++.+..+..+. .+.+++|+|+++++++++ .||.|++||
T Consensus 215 ~~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp EEEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred eEEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 99999999999876552 37899999999999988887654 589999999999999987 488999999
Q ss_pred CCCCceEEEEeCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCccccc
Q 001159 617 MDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1135)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1135)
+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 290 ~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~----------------------- 342 (433)
T 3bws_A 290 MDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP----------------------- 342 (433)
T ss_dssp TTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-----------------------
T ss_pred CCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-----------------------
Confidence 99998877764322 57899999999755 56688999999999766 2111110
Q ss_pred CCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccce
Q 001159 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1135)
Q Consensus 696 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1135)
+...+
T Consensus 343 ---------------------------------------------------------------------------~~~~~ 347 (433)
T 3bws_A 343 ---------------------------------------------------------------------------VFDKP 347 (433)
T ss_dssp ---------------------------------------------------------------------------CSSSE
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11233
Q ss_pred EEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 776 VVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 776 ~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.+++|+|+|+.+++++.+.. . .+..+
T Consensus 348 -~~~~~s~dg~~l~~~~~~~~----------------------------------------------~-------~~~~~ 373 (433)
T 3bws_A 348 -NTIALSPDGKYLYVSCRGPN----------------------------------------------H-------PTEGY 373 (433)
T ss_dssp -EEEEECTTSSEEEEEECCCC----------------------------------------------C-------TTTCT
T ss_pred -CeEEEcCCCCEEEEEecCCC----------------------------------------------c-------ccccc
Confidence 78889999887777654310 0 02234
Q ss_pred EEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEccc
Q 001159 856 VMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV 914 (1135)
Q Consensus 856 la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~~~ 914 (1135)
+++|+ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|+++.
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 45555 89999999999999988886 45799999999 8888888775 99999999863
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.3e-27 Score=268.43 Aligned_cols=329 Identities=11% Similarity=0.054 Sum_probs=210.0
Q ss_pred EEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEE
Q 001159 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
+|++.+...+.....|...|.+++|+|||++|++++ +..+++||..+++.......+ .+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEEEEEEEECS---CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcceeeeeecC---CeEEEEEcCCCCEEE
Confidence 455555566666678899999999999999999886 334889999988776554432 477788888888874
Q ss_pred -EEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCC
Q 001159 605 -AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPS 683 (1135)
Q Consensus 605 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 683 (1135)
+++.|++|++||..+++.+..+..+ ..|.++.|+++. ++++ .++.|++||+.++.+.+..+..
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------- 138 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------- 138 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----------
T ss_pred EEECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----------
Confidence 5778899999999999999988743 368999998864 4444 3679999998765111111000
Q ss_pred CCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeE
Q 001159 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1135)
Q Consensus 684 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~ 763 (1135)
T Consensus 139 -------------------------------------------------------------------------------- 138 (355)
T 3vu4_A 139 -------------------------------------------------------------------------------- 138 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcccccceEEEEEEecCCcceeE--ecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCC
Q 001159 764 LRLPDSIAASKVVVRLIYTNSGLSLLA--LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 841 (1135)
Q Consensus 764 ~~~~~~~~~~~i~~~~~~s~dg~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 841 (1135)
.. ..+++++ ..+++ ++.+|.|++||+..... .. +..
T Consensus 139 ----------~~-~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~----------------------~~-------~~~ 176 (355)
T 3vu4_A 139 ----------FG-GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS----------------------AT-------TQD 176 (355)
T ss_dssp ----------EE-EEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------
T ss_pred ----------CC-ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc----------------------cc-------ccc
Confidence 00 2233333 22333 34455555554321100 00 000
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccE-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEEcccceeeE
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS-VQIYNVRVDEVKT 919 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~-v~iwd~~~~~~~~ 919 (1135)
... +...... +..+.+|...|++++|+| ++++||+|+.||+ |++||+.+++++.
T Consensus 177 ~~~-----------------------~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 177 QGV-----------------------QQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp ---------------------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred ccc-----------------------cccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 000 0000112 677889999999999999 8999999999998 9999999999999
Q ss_pred Eec-C-cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 920 KLK-G-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 920 ~l~-~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
.+. + |.+.|++++|+||+++|++++.|++|++||+..+.......+.. + +.|. ++ ..
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~----------~----~~~~--~~--~~--- 291 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG----------W----INMK--YF--QS--- 291 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT----------T----EECC--CC--CC---
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc----------e----eecc--cc--cc---
Confidence 998 6 99999999999999999999999999999998754222111100 0 0000 00 00
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
.|.. ....+ ...+..+...++|++||++|++++.||.+++|++..+.
T Consensus 292 --~~~~---~~~~~--~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 292 --EWSL---CNFKL--SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp --SSCS---EEEEC--CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred --ccce---eEEEe--ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0111 00001 11113345679999999999999999999999987543
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.9e-27 Score=270.95 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=227.3
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEeC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~l-as~~~dg~i~iwd~~ 438 (1135)
+++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5889999999999999998876543 3334 458999999999987 566789999999999
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEE-EEE
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 517 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 517 (1135)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+|++ +.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 886554 444444 8999999999994 3467778899999999999998888754 568999998865 555 788
Q ss_pred EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec
Q 001159 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 518 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s 597 (1135)
+.|+.|++||+.+++....+..+ ..+.+++|+|+++++++++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988777766654 45689999999999865442 37899999999999888776543 68899999
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE-EEEECCCcEEEEEcCCCchhhhhccc
Q 001159 598 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 673 (1135)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 673 (1135)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999987 68999999999999988887653 47899999999987 56678999999999988 55555554
Q ss_pred cc
Q 001159 674 RA 675 (1135)
Q Consensus 674 ~~ 675 (1135)
+.
T Consensus 285 ~~ 286 (391)
T 1l0q_A 285 GK 286 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=305.68 Aligned_cols=252 Identities=15% Similarity=0.205 Sum_probs=211.8
Q ss_pred eec-CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCc--cccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 342 ~~~-h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
.+. |.+.|++++|+|+|+ ++++|+.||.|+|||+.++ +.+. .+.+|.+.|.+++|+|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECC
T ss_pred ecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecC
Confidence 344 899999999999998 6889999999999999843 3222 2678999999999999
Q ss_pred C--CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEEEEEcCCCe--eeee
Q 001159 419 D--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYT 492 (1135)
Q Consensus 419 d--~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~ 492 (1135)
+ +++|++|+.||.|++||+.++.. .....+.+|...|.+++|+|+ +. .+++|+.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233467789999999999999 88 89999999999999998873 4456
Q ss_pred ecCCCCCeeEEEeeccC-----------CccEEEEEEcCCeEEEEeCcCCCc----eeEecCCCCcEEEEEEcCC---CC
Q 001159 493 FEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSAD---GT 554 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~---~~ 554 (1135)
+.+|...|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 77899999999999842 458999999999999999988743 3467788999999999999 89
Q ss_pred EEEEEecCCCCCCeEEEEECCCCe-----EEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
++++++. ++.|++||+.++. .......|.. .|.+++|+|+++++++++.||.|++|++..+.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999975 8899999998864 2222333444 79999999999999999999999999998643
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-28 Score=301.46 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=216.6
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecC--CCeEEEEEEcCCCcEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1135)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.. .....+.+|.++|++++|+++ +. +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985322 334478899999999999988 77 899999999999
Q ss_pred EEEcCCCe--eeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcC-----
Q 001159 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1135)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 551 (1135)
+||+.+++ .+..+.+|...|.+++|+|+.++..+++|+.||.|++||++... ....+..|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788899999999999997435899999999999999998874 3456678889999999999
Q ss_pred --------CCCEEEEEecCCCCCCeEEEEECCCC----eEEEEeecccCCceeEEEecCC---CCEEEEEeCCCeEEEEE
Q 001159 552 --------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1135)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~i~~s~~---~~~l~~~~~dg~i~iwd 616 (1135)
++..+++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999985 889999999877 56677888877 8999999999 89999999999999999
Q ss_pred CCCCceE---EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 617 MDNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
+.+++.. .......+...|.+++|+|+++++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234457999999999999999999999999999865
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-28 Score=269.07 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=156.0
Q ss_pred CCceEEEEeec--CCCEEEEEe-CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001159 841 EESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 841 ~~~i~~l~~s~--dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
...|.+++|+| +++++++++ ||+|++||+.+++.+..... |...|++++|+| ++.+||+|+.||.|++||+.+++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCC
Confidence 67899999999 999999999 99999999999999777644 455899999999 89999999999999999999998
Q ss_pred ee-EEecC-cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc--eEEEECCCCcEEEE
Q 001159 917 VK-TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE--TKVQFHNDQTHLLV 992 (1135)
Q Consensus 917 ~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~dg~~l~~ 992 (1135)
.+ ..+.+ |.++|++++|+|++.+|++++ |++|++||+.+++.... +.....+. ..+ .+++|+|+|++|++
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~g~~l~~ 277 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YPTYTIPE---FKTGTVTYDIDDSGKNMIA 277 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SCCCBC--------CCEEEEECTTSSEEEE
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--eccccccc---ccccceEEEECCCCCEEEE
Confidence 87 78888 999999999999999999999 55999999998764321 11111121 222 46999999999999
Q ss_pred -Ee-cCeEEEEec-CCceeeccCCCCCCCCCEEEEEEee---CCCEEEEEeCCCeEEEEECCC
Q 001159 993 -VH-ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 993 -~~-d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~---d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+. |+.|+||++ +...... ..++..++|++ +.+.+++++.||.+.++-...
T Consensus 278 ~s~~d~~i~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 278 YSNESNSLTIYKFDKKTKNWT-------KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EETTTTEEEEEEECTTTCSEE-------EEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ecCCCCcEEEEEEcccccceE-------ecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 44 999999999 3332211 13577888888 889999999999999886554
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-27 Score=272.11 Aligned_cols=285 Identities=10% Similarity=0.060 Sum_probs=226.3
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe---EEEEeecccC------------------------------
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK------------------------------ 588 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1135)
.++.+++|+++|++|+++. ++.|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678899999999777764 6689999999998 6666553321
Q ss_pred -----------------------CceeEEEecCCCCEE-EEEeCCCeEEEEECC--CCceEEEEeCCCCCCCcceEEEcC
Q 001159 589 -----------------------RSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 589 -----------------------~~v~~i~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 158999999999996 888899999999999 888888887544445799999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCchhhh-hccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcc
Q 001159 643 EGSLLAVTTSDNGIKILANSDGVRLLR-MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1135)
Q Consensus 643 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1135)
++++|++++.+|.+++|++.++.. .. ..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~~~-------------------------------------------------- 188 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKFTQ-------------------------------------------------- 188 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSCCC--------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-ccccc--------------------------------------------------
Confidence 999999999999999999876621 10 00
Q ss_pred ccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC---CcceeEecccceee
Q 001159 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS---GLSLLALASNAVHK 798 (1135)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d---g~~l~~~~~dg~i~ 798 (1135)
.....|...| .+++|+|+ +++|++++.|+.|+
T Consensus 189 --------------------------------------------~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d~~i~ 223 (450)
T 2vdu_B 189 --------------------------------------------EPILGHVSML-TDVHLIKDSDGHQFIITSDRDEHIK 223 (450)
T ss_dssp --------------------------------------------CCSEECSSCE-EEEEEEECTTSCEEEEEEETTSCEE
T ss_pred --------------------------------------------eeeecccCce-EEEEEcCCCCCCcEEEEEcCCCcEE
Confidence 0001255666 99999999 99999999999999
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEE
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM 877 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 877 (1135)
+||+.. +..+...+.+ | ...|.+++|+ ++++|++++ |++|++||+.+++++..
T Consensus 224 vwd~~~----------------------~~~~~~~~~~--h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 224 ISHYPQ----------------------CFIVDKWLFG--H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST 277 (450)
T ss_dssp EEEESC----------------------TTCEEEECCC--C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE
T ss_pred EEECCC----------------------CceeeeeecC--C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee
Confidence 998643 2222222333 7 8999999999 999999999 99999999999999888
Q ss_pred EeC-------------------------CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEc--ccc---eeeEEecCcCC
Q 001159 878 FMS-------------------------PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV--RVD---EVKTKLKGHQN 926 (1135)
Q Consensus 878 ~~~-------------------------h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~--~~~---~~~~~l~~h~~ 926 (1135)
+.. ....|.+++|+| ++++|++++ .|+.|++|++ .++ +.+..+.+| +
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~ 355 (450)
T 2vdu_B 278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-Y 355 (450)
T ss_dssp EECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-S
T ss_pred ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-C
Confidence 863 235689999999 899999998 8999999999 565 777888888 8
Q ss_pred CeEEEEEcCCCCeEEEEcC-------CCcEEEEeCCC
Q 001159 927 RITGLAFSPTLNALVSSGA-------DAQLCMWSIDK 956 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~-------D~~i~iwd~~~ 956 (1135)
.|.+++|+|++ ++++++. +..|.+|.+..
T Consensus 356 ~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 356 NVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 89999999964 4555432 45588887654
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=9.8e-28 Score=273.69 Aligned_cols=304 Identities=14% Similarity=0.099 Sum_probs=201.4
Q ss_pred CCCeeEEEE---ecCCCeEEEEEeccceEEEEEcCCccccccC-----Cceeeccccccc-----chhhhhccCCCcceE
Q 001159 346 GSNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAHK-----PFKVWDISAASM-----PLQNALLNDAAISVN 412 (1135)
Q Consensus 346 ~~~V~~v~~---sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 412 (1135)
+....++.| +|++..++++|. ++.|.+|+.......... ....+....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566666 456655777664 788999986533221110 011111110000 000111234555556
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEeCCCCcee--eeeEeecccCCEEEEEEec--------CCCeEEEEEEcCCCcEEEE
Q 001159 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVW 482 (1135)
Q Consensus 413 ~v~~spd~~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~v~~v~~s~--------d~~~~~l~s~~~d~~i~iw 482 (1135)
...+++++.+||+|+.|++|+|||+.++.... ....+.+|.+.|.+++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66667788899999999999999999876532 2234679999999999998 777 89999999999999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-------------------------e
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------Y 537 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-------------------------~ 537 (1135)
|+.++.++..+.+|..+|.+++|+|.+ ..+|++++.||+|++||+.+.+.... .
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999998888888899999999999864 25899999999999999987654322 1
Q ss_pred cCCCCcEEEEEEc-CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEE------------------EecC
Q 001159 538 DAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV------------------QFDT 598 (1135)
Q Consensus 538 ~~~~~~i~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i------------------~~s~ 598 (1135)
..+...+.++.|+ ++++.+++++. ++.+++||+.++.....+..+.. .+..+ .+++
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 3455577788886 79999999875 88999999998877666655433 22222 2222
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 599 --TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 599 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
++.++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233566688999999999999988887776644 799999999999999998775 566654
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-28 Score=268.73 Aligned_cols=267 Identities=8% Similarity=0.052 Sum_probs=212.0
Q ss_pred EEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001159 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1135)
Q Consensus 353 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i 432 (1135)
.+.+++. ++++|+.||.|++||+.+++.+.. +. ...|.++.|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3456675 799999999999999999876643 11 456788889998 9999999999
Q ss_pred EEEEeC---------CCCceeeeeEeecccCCEEEEEEec--CCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC-CCCCe
Q 001159 433 HLYTYN---------PTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAPV 500 (1135)
Q Consensus 433 ~iwd~~---------~~~~~~~~~~l~~h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v 500 (1135)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++|+.|++|++||+++++.+..+.. |...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999766 3322221 1226778999999999 998 899999999999999999998776644 55689
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCce-eEecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.+++|+|++ .+|++|+.||.|++||+++.+.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 999999854 89999999999999999998887 67777 899999999999999999987 3389999999987
Q ss_pred EEEEeec---ccCCce--eEEEecCCCCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC---CCCEEEE
Q 001159 579 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 649 (1135)
Q Consensus 579 ~~~~~~~---~~~~~v--~~i~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~ 649 (1135)
.+..+.. +.. .+ .+++|+|++++|++++. |+.|++|++......... .++..+.|.+ +...+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7655543 222 33 36999999999999988 999999999765543333 1466778888 8889999
Q ss_pred EECCCcEEEEEcC
Q 001159 650 TTSDNGIKILANS 662 (1135)
Q Consensus 650 ~~~dg~i~iwd~~ 662 (1135)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999988543
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.4e-26 Score=242.86 Aligned_cols=285 Identities=14% Similarity=0.074 Sum_probs=194.0
Q ss_pred eeEEEEe-cCCCeEEEEEeccceEEEEEcCCc---cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 349 VMSMDFH-PQQQTILLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 349 V~~v~~s-p~g~~lla~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
|.++-|- +..+.+.+.......|++|+..++ +.+++ ..+|..+|..+.++||-.-|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence 4455553 344433333334679999999988 54443 445666777777777544322
Q ss_pred EE-eCCC-eEEEEEeC--CC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEc-CCCeeeeeecCC
Q 001159 425 VA-FSKH-IVHLYTYN--PT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDV-VAGRKQYTFEGH 496 (1135)
Q Consensus 425 s~-~~dg-~i~iwd~~--~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~~h 496 (1135)
.. -.+= .-.++-+. .. +.+.+...-.+|...|.++ ++++ ++.+++ .|+.|++|++ .+|+.+..+.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 21 1111 01111111 00 1111111223344444443 4554 455533 6999999999 458888888899
Q ss_pred CCCeeEEEeec-cCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCC---cEEEEEEcCCCCEEEEEec--------CCC
Q 001159 497 EAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTRLFSCGT--------SKE 564 (1135)
Q Consensus 497 ~~~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~--------~~~ 564 (1135)
...+..++|++ .+++..|++++.|++|++||+.+++.+..+..+.. .+.+++|+|+|.++++++. .+.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999999 66779999999999999999999999988876543 6778899999998865431 123
Q ss_pred CCCeEEEEECCCCeEEEEe-----ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 565 GESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
.|++|++||..+++.+..+ .+|.. .+.+..++ +..+++++.|++|+|||+.+++.+.++.+|... .+.+++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--C-CCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-eEEEEE
Confidence 5889999999999988766 25544 33333443 788999999999999999999999999876441 344689
Q ss_pred EcCCCCEEEEEECCCcEEEEEc
Q 001159 640 FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|+|||++|++|+.|++|+|||.
T Consensus 334 fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.7e-26 Score=268.87 Aligned_cols=341 Identities=10% Similarity=0.126 Sum_probs=253.4
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEEC--CCCceEEEE
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM--DNMNMLTTV 626 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~ 626 (1135)
++|++..+++++. ++.|.+||..+++++.++..+. .+..++|+|+|+++++++.|+.|++||+ .+++.+.++
T Consensus 145 ~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred cCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 7788877777654 7899999999999999998544 3788999999999999999999999999 888888888
Q ss_pred eCCCCCCCcceEEEcC----CCCEEEEEEC-CCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccc
Q 001159 627 DADGGLPASPRLRFNK----EGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 701 (1135)
.... .+..++|+| ||+++++++. +++|.+||..++ +.++.+..+.....
T Consensus 219 ~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~---------------------- 272 (543)
T 1nir_A 219 KIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVD---------------------- 272 (543)
T ss_dssp ECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSS----------------------
T ss_pred ecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccC----------------------
Confidence 7432 478999999 9999998885 899999998877 44433322110000
Q ss_pred cccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccc-cceEEEEE
Q 001159 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA-SKVVVRLI 780 (1135)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 780 (1135)
. ...|. ..+ ..+.
T Consensus 273 ---------------------------------------------------------~--------~~~~~~~~v-~~i~ 286 (543)
T 1nir_A 273 ---------------------------------------------------------T--------QTYHPEPRV-AAII 286 (543)
T ss_dssp ---------------------------------------------------------S--------CCEESCCCE-EEEE
T ss_pred ---------------------------------------------------------c--------cccccCCce-EEEE
Confidence 0 00011 244 8899
Q ss_pred EecCCccee-EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEE
Q 001159 781 YTNSGLSLL-ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSA 859 (1135)
Q Consensus 781 ~s~dg~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~ 859 (1135)
++|++..++ +...++.|.+||+..... +....+. + ...+..++|+|||++++++
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~---------------------l~~~~i~---~-~~~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDN---------------------LTVTSIG---A-APFLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSS---------------------CEEEEEE---C-CSSCCCEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCc---------------------ceeEEec---c-CcCccCceECCCCCEEEEE
Confidence 999876655 455689999998653211 0000011 2 4456789999999988766
Q ss_pred e--CCeEEEEECCCccEEEEEeC----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-------ceeeEEecCcC
Q 001159 860 S--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV-------DEVKTKLKGHQ 925 (1135)
Q Consensus 860 ~--dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~ 925 (1135)
+ +++|.+||+.+++++..+.. |.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.
T Consensus 342 ~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred ecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 5 78999999999999998874 55444443 5784577778775 689999999998 89999999999
Q ss_pred CCeEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCCceecee-eeecCCCCCCCCCCceEEEECCCCcEEEEE----
Q 001159 926 NRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSR-FIQAPAGRQSPLVGETKVQFHNDQTHLLVV---- 993 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~-------~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~---- 993 (1135)
+.+..++|+||+++|++++ .+++|.+||+.+++..... .+....+.......+..++|+|||+++.++
T Consensus 421 ~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 421 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecC
Confidence 9999999999999999987 2679999999998865221 121100111112568899999999999874
Q ss_pred --ecCeEEEEec-CCceeeccCC
Q 001159 994 --HESQISVYDS-KLECSRSWSP 1013 (1135)
Q Consensus 994 --~d~~v~vwd~-~~~~~~~~~~ 1013 (1135)
.++.|.|||. +++++..+..
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCCeEEEEECCCceEEEeecC
Confidence 2689999999 7777776653
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.2e-25 Score=263.05 Aligned_cols=324 Identities=12% Similarity=0.131 Sum_probs=252.7
Q ss_pred EecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeC--cCCCceeEec
Q 001159 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDYD 538 (1135)
Q Consensus 461 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~ 538 (1135)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+|++ ++|++++.|++|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778886 889999999999999999999999984333 8899998855 89999999999999999 7766666666
Q ss_pred CCCCcEEEEEEcC----CCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc----------cCCceeEEEecCCCCEEE
Q 001159 539 APGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 539 ~~~~~i~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~i~~s~~~~~l~ 604 (1135)
....+..++|+| ||++++++.. .+++|.+||..+++++..+..+ ....+..+.+++++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999998863 3788999999999999888752 233688899999876654
Q ss_pred -EEeCCCeEEEEECCCCceEE--EEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhcccccccccc
Q 001159 605 -AAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 605 -~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 680 (1135)
+...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+..
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~------- 364 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDV------- 364 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEEC-------
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeecc-------
Confidence 56688999999998876544 4432 22578899999999876655 5889999999877 22211110
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 365 -------------------------------------------------------------------------------- 364 (543)
T 1nir_A 365 -------------------------------------------------------------------------------- 364 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 840 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 840 (1135)
+. ..|
T Consensus 365 ------------------------g~--------------------------------------------------~ph- 369 (543)
T 1nir_A 365 ------------------------GK--------------------------------------------------TPH- 369 (543)
T ss_dssp ------------------------SS--------------------------------------------------SBC-
T ss_pred ------------------------CC--------------------------------------------------CCC-
Confidence 00 002
Q ss_pred CCceEEEEeecC-CCEEEEEe--CCeEEEEECCC-------ccEEEEEeCCCCCeEEEEEecCCCcEEEEEe-------C
Q 001159 841 EESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------E 903 (1135)
Q Consensus 841 ~~~i~~l~~s~d-g~~la~~~--dg~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~-------~ 903 (1135)
......+ ++|+ |.+++++. |++|.|||+.+ +++++++.+|...+..++|+| ++++|++++ .
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCccc
Confidence 2222222 3565 55666664 68999999988 899999999998999999999 899999987 2
Q ss_pred CCcEEEEEcccceee-EEe--------cCcCCCeEEEEEcCCCCeEEEE-----cCCCcEEEEeCCCCceec
Q 001159 904 DSSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 904 dg~v~iwd~~~~~~~-~~l--------~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iwd~~~~~~~~ 961 (1135)
+++|.+||+.+++.. ..+ ..+...+..++|+|||+.+.++ +.|+.|.|||.++++.+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 779999999998876 443 4567889999999999988866 247999999999988543
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.2e-26 Score=264.78 Aligned_cols=247 Identities=7% Similarity=-0.066 Sum_probs=175.3
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC-------
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP------- 418 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp------- 418 (1135)
...+....+++++. ++|+|+.|++|+|||+.+++..... ....+.+|.+.|++++|+|
T Consensus 89 ~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 89 DGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp --------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred CCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccccccC
Confidence 33444444555564 7999999999999999887654211 1123789999999999998
Q ss_pred -CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-----
Q 001159 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----- 492 (1135)
Q Consensus 419 -d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----- 492 (1135)
|+++||+|+.|++|+|||+.++.... .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~~ 229 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQTE 229 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---------
T ss_pred CCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccccC
Confidence 89999999999999999998876544 56679999999999999865 799999999999999988764332
Q ss_pred --------------------ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEE---
Q 001159 493 --------------------FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY--- 549 (1135)
Q Consensus 493 --------------------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--- 549 (1135)
..+|...|.++.|.+. ++..+++++.|+++++||+........+..+...+..+.+
T Consensus 230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS-DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp -CSCCCSEEEESGGGC------CCSSSCSEEEEETT-TTCEEEEECTTSEEEEEEC-------------------CCSCS
T ss_pred CcccceEEecccccceeeeecccccccceeeeeecC-CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc
Confidence 2367888999998742 5589999999999999999877655555444443333332
Q ss_pred ---------------cC-CCCEE-EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 550 ---------------SA-DGTRL-FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 550 ---------------s~-~~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
+| .+..+ ++++ .|+.|++||..+++....+.+|.. .|.+++|+|||++|++++.+| +
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs----~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G-v 382 (393)
T 4gq1_A 309 VQGISLFPSLLGACPHPRYMDYFATAHS----QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS-V 382 (393)
T ss_dssp EEEECSSCCSSCCEECSSCTTEEEEEET----TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE-E
T ss_pred cccccccCcceeEEEccCCCCEEEEEEC----CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC-e
Confidence 22 33444 4444 388999999999998888888877 899999999999999998776 5
Q ss_pred EEEECC
Q 001159 613 KFWDMD 618 (1135)
Q Consensus 613 ~iwd~~ 618 (1135)
.+|.+.
T Consensus 383 ~lvrL~ 388 (393)
T 4gq1_A 383 LLTRLM 388 (393)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 556543
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.4e-24 Score=243.92 Aligned_cols=306 Identities=14% Similarity=0.155 Sum_probs=231.5
Q ss_pred cCCEEEEEEecCCCeEEEEEEc----CCC----cEEEEEc--CCCeee--eeecCCCCCeeEEEeeccC-----------
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 509 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~i~~~~~~----------- 509 (1135)
...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346777889888876 676775 567 9999999 899887 4588898888887766420
Q ss_pred -CccEEEEEEcC------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 510 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 510 -~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.+. ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 45666777888999999999999999887522 3468999999998875 4
Q ss_pred eecccCCceeEEEecCCCCEEE-EEeCCC--eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-CC--cE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 656 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 656 (1135)
+..+.. .+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..+. ..+.+++|+|||++|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS--SCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC--CcccceEECCCCCEEEEEECCCCCcEE
Confidence 555555 789999999999888 565555 499999998876 4444443 46889999999999998886 44 45
Q ss_pred EEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCccccc
Q 001159 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1135)
Q Consensus 657 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1135)
.+||+.++. ..
T Consensus 294 ~~~d~~~~~-~~-------------------------------------------------------------------- 304 (415)
T 2hqs_A 294 YKVNINGGA-PQ-------------------------------------------------------------------- 304 (415)
T ss_dssp EEEETTSSC-CE--------------------------------------------------------------------
T ss_pred EEEECCCCC-EE--------------------------------------------------------------------
Confidence 555654431 00
Q ss_pred ccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccccc
Q 001159 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
.
T Consensus 305 -----------------------------------------~-------------------------------------- 305 (415)
T 2hqs_A 305 -----------------------------------------R-------------------------------------- 305 (415)
T ss_dssp -----------------------------------------E--------------------------------------
T ss_pred -----------------------------------------E--------------------------------------
Confidence 0
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-C---CeEEEEECCCccEEEEEeCCCCCeEEEEEec
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 892 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-d---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp 892 (1135)
+.. | ...+.+++|+|||++|++++ + ..|++||+.+++. ..+..+. .+.+++|+|
T Consensus 306 -----------------l~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 306 -----------------ITW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp -----------------CCC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT
T ss_pred -----------------Eec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC
Confidence 000 2 44566788888888888776 3 4799999998877 4455554 899999999
Q ss_pred CCCcEEEEEeCCC---cEEEEEcccceeeEEecCcCCCeEEEEEcCCCC
Q 001159 893 QDNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 893 ~~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 938 (1135)
++++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 364 -dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 -NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred -CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 899998888777 79999987 555778999999999999999754
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.5e-23 Score=261.78 Aligned_cols=303 Identities=13% Similarity=0.095 Sum_probs=215.6
Q ss_pred CCCeeEEEEecCCCeEEEEEec-cc-----eEEEEEcCCccccccCCceeec-----ccccccchh-hhhccCCCcceEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWD-----ISAASMPLQ-NALLNDAAISVNR 413 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~h~~~V~~ 413 (1135)
...|.+++|||||+ .|++++. || .|.+||+.+++........... +........ ...+ .....|.+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcce
Confidence 35799999999999 5666666 87 9999999988754321000000 000000000 0000 00134889
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEeCCCC--ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee
Q 001159 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 414 v~~spd~~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 491 (1135)
++|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ +|++++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999987 999999999872 233 4567888899999999999 677777 5699999999988766
Q ss_pred eecCCCCC----------------eeEEEeeccCCccEEEEEEcCC---------------------------------e
Q 001159 492 TFEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG---------------------------------K 522 (1135)
Q Consensus 492 ~~~~h~~~----------------v~~i~~~~~~~~~~l~s~s~dg---------------------------------~ 522 (1135)
....+... +.+++|+|++ ++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444432 4778998855 8888887765 8
Q ss_pred EEEEeCcC-CCceeEec--CCCCcEEEEEEcCCCCEEEEEec-CCCCCCeEEEEECCCCeEEEEeecccCC---ceeEEE
Q 001159 523 IKAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKR---SLGVVQ 595 (1135)
Q Consensus 523 i~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~i~ 595 (1135)
|.+||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||+.+++....+..+... .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999987 66544332 35678999999 99999997654 2234678999999999988777765542 245789
Q ss_pred ecCCCCEEEEEeCCCeEEEEECC-CCceEEEEeCCCCCCCcceE-EEcCCCCEEEEEEC-CC--cEEEEEcCC
Q 001159 596 FDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTS-DN--GIKILANSD 663 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~-dg--~i~iwd~~~ 663 (1135)
|+|||+++++++.||.+++|.++ .++ ...+..+. ..+..+ .|+|+++.|+..+. ++ .++||++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999988889999988888765 344 55555443 357676 59999998765554 44 889998754
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=2.9e-24 Score=246.12 Aligned_cols=296 Identities=8% Similarity=0.021 Sum_probs=226.5
Q ss_pred CCeeEEEEecCCCeEEEEEe----ccc----eEEEEEc--CCccccccCCceeecccccccchhhhhccCCCcceEEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 416 (1135)
..|...+|++.|..++++|+ .+| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999988888886 457 8999999 8887653211 3456666666666
Q ss_pred cC--------------CCCeEEEEeCC------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 417 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 417 sp--------------d~~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
++ .+..++.++.+ +.|++||+.++ ..+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 54 26677776654 79999999853 333 5678999999999999999 78888877
Q ss_pred C---cEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEE-EEEcCCe--EEEEeCcCCCceeEecCCCCcEEEEEEc
Q 001159 477 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1135)
Q Consensus 477 ~---~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s 550 (1135)
+ .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999999865 6666 6766655 99999987654 5666777889999999
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC---CeEEEEECCCCceEEEEe
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 627 (1135)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998763 223457999999888743 3444443 78889999999999987754 58999999988764 343
Q ss_pred CCCCCCCcceEEEcCCCCEEEEEECCC---cEEEEEcCCCchhhhhcccccccc
Q 001159 628 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDGVRLLRMLEGRAMDK 678 (1135)
Q Consensus 628 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 678 (1135)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+ ..+.+..+...+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v 400 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQV 400 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEE
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCC
Confidence 33 2 688999999999999998877 7999998754 344555555444
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=4e-23 Score=257.94 Aligned_cols=328 Identities=10% Similarity=0.032 Sum_probs=238.4
Q ss_pred cCCEEEEEEecCCCeEEEEEEcC-CC-----cEEEEEcCCCeeeeeecCCCC------------------------CeeE
Q 001159 453 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEA------------------------PVYS 502 (1135)
Q Consensus 453 ~~~v~~v~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~ 502 (1135)
...|.+++|+|||+ +|++++. |+ .|++||+.+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44699999999999 7888887 88 999999999987766654433 3788
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCC--ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
++|+|++ ++|++++. +.|++||+.++. ....+..+...+.+++|||||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 9998855 88888886 999999998873 4445666777899999999999999886 458999999998876
Q ss_pred EEeecccCC---------------ceeEEEecCCCCEEEEEeCCC---------------------------------eE
Q 001159 581 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 612 (1135)
Q Consensus 581 ~~~~~~~~~---------------~v~~i~~s~~~~~l~~~~~dg---------------------------------~i 612 (1135)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 655443321 146799999999999987665 88
Q ss_pred EEEECCC-CceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC-----CCcEEEEEcCCCchhhhhccccccccccCCCCCC
Q 001159 613 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1135)
Q Consensus 613 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1135)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.++. ....+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~--------------- 328 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLA--------------- 328 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEE---------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEE---------------
Confidence 9999998 876554432123346889999 99999987764 4567777765551 00000
Q ss_pred CCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeec
Q 001159 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1135)
Q Consensus 687 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~ 766 (1135)
T Consensus 329 -------------------------------------------------------------------------------- 328 (741)
T 2ecf_A 329 -------------------------------------------------------------------------------- 328 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEE
Q 001159 767 PDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 846 (1135)
Q Consensus 767 ~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~ 846 (1135)
....++ | -..+..
T Consensus 329 -----------------------~~~~~~----~----------------------------------------~~~~~~ 341 (741)
T 2ecf_A 329 -----------------------HETSPT----W----------------------------------------VPLHNS 341 (741)
T ss_dssp -----------------------EEECSS----C----------------------------------------CCCCSC
T ss_pred -----------------------EcCCCC----c----------------------------------------CCcCCc
Confidence 000000 0 112335
Q ss_pred EEeecCCCEEEEEe-CCeEEEEECC-CccEEEEEeCCCCCeEEE-EEecCCCcEE-EEEeCCC--cEEEEEccc-ceeeE
Q 001159 847 IALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNII-AIGMEDS--SVQIYNVRV-DEVKT 919 (1135)
Q Consensus 847 l~~s~dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~h~~~v~~l-~~sp~~~~~l-asg~~dg--~v~iwd~~~-~~~~~ 919 (1135)
++|+|||+++++++ +|.++||.+. +++ ...+..|...+..+ +|+| +++.| ++++.++ .++||++.. ++...
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 68888988777776 6766666654 344 67777788888887 5999 67655 4555555 899999874 55566
Q ss_pred EecCcCCCeEEEEEcCCCCeEEEEcCC----CcEEEEeCCCC
Q 001159 920 KLKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 957 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iwd~~~~ 957 (1135)
.+.. ...+.+++|||||++|+....+ ..+.+|+...+
T Consensus 420 ~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 420 RLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp ECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 7765 6678999999999988876544 46889988654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=2.4e-23 Score=259.31 Aligned_cols=288 Identities=10% Similarity=0.082 Sum_probs=211.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCc---ceEEEEEcCCCCeEE
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLG 424 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~spd~~~la 424 (1135)
.+.+++|||||+ ++++ +.||.|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 577899999998 5665 6899999999998875432 334443 499999999999999
Q ss_pred EEeCC---------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC
Q 001159 425 VAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1135)
Q Consensus 425 s~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 495 (1135)
+++.+ +.+.+||+.+++. .......+|...+.+++|||||+ .|++++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7889999998765 22222334555689999999999 6777774 7999999999887766655
Q ss_pred CCCCe------------------eEEEeeccCCccEEEEEEcCC----------------------------------eE
Q 001159 496 HEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------KI 523 (1135)
Q Consensus 496 h~~~v------------------~~i~~~~~~~~~~l~s~s~dg----------------------------------~i 523 (1135)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 789998865 8888887653 79
Q ss_pred EEEeCcCCCceeEecCC------CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce----eE
Q 001159 524 KAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GV 593 (1135)
Q Consensus 524 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 593 (1135)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887765555544 567899999999998877654434467899999999988776655433233 37
Q ss_pred EEecCCCCEEEE--EeCCC------eEEEEE-CCCCce--EEEEeCCCCCCCcce-EEEcCCCCEEEEEECC---CcEEE
Q 001159 594 VQFDTTRNRFLA--AGDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIKI 658 (1135)
Q Consensus 594 i~~s~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d---g~i~i 658 (1135)
++|+|||+.|+. +..++ .|++|| ...++. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 899999997775 44666 577777 344441 3334321 123444 6899999999877665 78999
Q ss_pred EEcCCC
Q 001159 659 LANSDG 664 (1135)
Q Consensus 659 wd~~~~ 664 (1135)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 987643
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.6e-21 Score=217.24 Aligned_cols=281 Identities=10% Similarity=0.078 Sum_probs=207.9
Q ss_pred EEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeC-CC
Q 001159 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 430 (1135)
Q Consensus 352 v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~-dg 430 (1135)
..|.++++.++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777877889999999999999999876543 22344556 9999999997777665 88
Q ss_pred eEEEEEeCCCCc-eeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-C--cEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 431 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-K--MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 431 ~i~iwd~~~~~~-~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666665599999999 56655545 3 8999999999988887644 456899998
Q ss_pred ccCCccEEEEEEcCCe-EEEEeCcCCCcee----EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--
Q 001159 507 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 579 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1135)
|++. .++++...++. |.+|+++...... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8652 24555566688 9999998655432 22234456899999999998776653 478899999999888
Q ss_pred -EEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCce--EEEEeCC--CCCC---CcceEEEcCCCCEEEEE
Q 001159 580 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLP---ASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 580 -~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~~~~~~~~~~l~~~ 650 (1135)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... .... ....++|+|++++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776543 577899999999877655 578899999999887 4444322 1111 12458999999988766
Q ss_pred EC-CCcEEEEEcCCC
Q 001159 651 TS-DNGIKILANSDG 664 (1135)
Q Consensus 651 ~~-dg~i~iwd~~~~ 664 (1135)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.6e-21 Score=240.00 Aligned_cols=237 Identities=9% Similarity=-0.022 Sum_probs=168.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCce-eeeeEeeccc-----------------CCEEEEEEecCCCeEEEEE
Q 001159 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 472 (1135)
Q Consensus 411 V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~v~~s~d~~~~~l~s 472 (1135)
+..+.|+ |+.+++++.|+ | +||+.+++.+ . .+..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4557888 67777888888 8 9999998762 3 222332 56999999999 5 3444
Q ss_pred EcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcC-----CCceeEecCCCCc----
Q 001159 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 543 (1135)
Q Consensus 473 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~---- 543 (1135)
+. |+.|++||+.+++... +..+...+.+++|+|++ +.|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred EE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 43 5999999999887654 44577788999998865 788874 789999999988 6555433333332
Q ss_pred ----------EEEEEEcCCCCEEEEEecCC-----------------------------CCCCeEEEEECCCCeEEEEee
Q 001159 544 ----------CTMMAYSADGTRLFSCGTSK-----------------------------EGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 544 ----------i~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+.+++|+|||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135789999999988765543
Q ss_pred c-ccCCceeEEEecCCCCEEEEEeCCC-----eEEEEECCCCceEEEEe-CCC--CCCCcceEEEcC--CCCEEEEEECC
Q 001159 585 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-ADG--GLPASPRLRFNK--EGSLLAVTTSD 653 (1135)
Q Consensus 585 ~-~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~~~~~~--~~~~l~~~~~d 653 (1135)
. .....+..++|+|||++|++++.++ .|++||+.+++....+. ... ....+..++|+| ||+++++++.+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233688999999999999987665 89999999984443332 111 111346789999 99999988888
Q ss_pred CcEEEEEcC
Q 001159 654 NGIKILANS 662 (1135)
Q Consensus 654 g~i~iwd~~ 662 (1135)
+.++||.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 888888764
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=8.8e-21 Score=213.51 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=216.6
Q ss_pred eecCCCCeeEEEEecCCCeEEEEEec------cceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEE
Q 001159 342 TLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1135)
Q Consensus 342 ~~~h~~~V~~v~~sp~g~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 415 (1135)
.......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+.+++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~ 95 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGAT 95 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEE
Confidence 33445688999999999966555433 67999999998876543 11 223477899
Q ss_pred EcCCCCeEEEE-eCCCeEEEEEeCCCCceeeeeEeecccC---------CEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 416 WGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 416 ~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
|+|+|++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 99999966555 557999999999987654 3333322 2789999999995322222568999999999
Q ss_pred CCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecC----CCCcEEEEEEcCCCCEEEEEec
Q 001159 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
+++.+..+..+...+.+++|+|++ +++++++.++.|.+||..+.+....+.. +...+..++|+|++++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 999998887666678889998865 7899999999999999998877766554 4456888999999998887753
Q ss_pred CCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEE
Q 001159 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1135)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1135)
.++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 368899999999999888876442 5689999999776655 78999999999999988887543 4789999
Q ss_pred cCCCCEEEEEECCC
Q 001159 641 NKEGSLLAVTTSDN 654 (1135)
Q Consensus 641 ~~~~~~l~~~~~dg 654 (1135)
+|+|++|+++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999877776553
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.8e-21 Score=242.25 Aligned_cols=241 Identities=11% Similarity=-0.015 Sum_probs=179.0
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC---CEEEEEEecCCCeEEEEEEcCC---------
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDD--------- 476 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~---~v~~v~~s~d~~~~~l~s~~~d--------- 476 (1135)
..+.+++|||||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence 34778999999998876 789999999999987543 4555654 499999999999 77777654
Q ss_pred CcEEEEEcCCCeeeeee---cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCc----------
Q 001159 477 KMIKVWDVVAGRKQYTF---EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW---------- 543 (1135)
Q Consensus 477 ~~i~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------- 543 (1135)
+.|++||+.+++. ..+ .+|...+..++|+|++ +.|+.++. +.|++||+.+++.......+...
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG--~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG--QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST--TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEECCCC--CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 7888999998876 333 3455568899998865 78888876 89999999987766554443332
Q ss_pred --------EEEEEEcCCCCEEEEEecCCC------------------------------CCCeEEEEECCCCeEEEEeec
Q 001159 544 --------CTMMAYSADGTRLFSCGTSKE------------------------------GESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 544 --------i~~~~~s~~~~~l~~~~~~~~------------------------------~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
+.+++|||||++|++++.+.. .+..|++||+.+++....+..
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~ 246 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence 278999999999998874321 123799999999886666665
Q ss_pred cc-----CCceeEEEecCCCCEEEEEeC----CCeEEEEECCCCceEEEEeCCCCCCCc----ceEEEcCCCCEEEEE--
Q 001159 586 FR-----KRSLGVVQFDTTRNRFLAAGD----EFQIKFWDMDNMNMLTTVDADGGLPAS----PRLRFNKEGSLLAVT-- 650 (1135)
Q Consensus 586 ~~-----~~~v~~i~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~-- 650 (1135)
+. ...+..++|+|||+++++... +..|++||+.+++....+..+.. ..+ ..++|+|||+.|+..
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-CEEeccCCCceEcCCCCeEEEEEe
Confidence 41 336889999999998877643 36799999999987766543211 122 378999999977754
Q ss_pred ECCC------cEEEEE
Q 001159 651 TSDN------GIKILA 660 (1135)
Q Consensus 651 ~~dg------~i~iwd 660 (1135)
..++ .|.+||
T Consensus 326 ~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSS 341 (723)
T ss_dssp ECCSSSSCEEEEEEEC
T ss_pred cccCCCcceeEEEEEe
Confidence 4566 455565
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.4e-21 Score=242.31 Aligned_cols=322 Identities=11% Similarity=0.087 Sum_probs=222.6
Q ss_pred EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeee-eeecCCC-----------------CCeeEEEeeccCCccEEEEE
Q 001159 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHE-----------------APVYSVCPHHKESIQFIFST 517 (1135)
Q Consensus 456 v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~~~l~s~ 517 (1135)
+..+.|. |. .+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|+ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 4457788 55 466666677 8 9999999873 4443332 56999999986 244444
Q ss_pred EcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-----CeEEEEeecccCC---
Q 001159 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-----GAIKRTYSGFRKR--- 589 (1135)
Q Consensus 518 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~--- 589 (1135)
.++.|++||+.+++.. .+..+...+.+++|+|||++|+++. ++.|++||+.+ ++.......+...
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3444566788899999999999864 67899999998 7766544443331
Q ss_pred ----------ceeEEEecCCCCEEEEEe---------------------------------CCCeEEEEECCCCceEEEE
Q 001159 590 ----------SLGVVQFDTTRNRFLAAG---------------------------------DEFQIKFWDMDNMNMLTTV 626 (1135)
Q Consensus 590 ----------~v~~i~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 626 (1135)
.+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 147899999999999987 4478999999988765544
Q ss_pred eCCCCCCCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccc
Q 001159 627 DADGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1135)
Q Consensus 627 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 701 (1135)
....+...+..++|+|||+.|++++.++ .|.+||+.++.. .+
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~-------------------------------- 298 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VR-------------------------------- 298 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EE--------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-ee--------------------------------
Confidence 3323334688999999999999887665 778887765510 00
Q ss_pred cccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEE
Q 001159 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIY 781 (1135)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 781 (1135)
.
T Consensus 299 ----------------------------------------------------------------------------~--- 299 (706)
T 2z3z_A 299 ----------------------------------------------------------------------------T--- 299 (706)
T ss_dssp ----------------------------------------------------------------------------E---
T ss_pred ----------------------------------------------------------------------------E---
Confidence 0
Q ss_pred ecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec--CCCEEEEE
Q 001159 782 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK--NDSYVMSA 859 (1135)
Q Consensus 782 s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~--dg~~la~~ 859 (1135)
+......+ . ...+.+++|+| ||++++++
T Consensus 300 ------~~~~~~~~-------------------------------------------~-~~~~~~~~~sp~~dg~~l~~~ 329 (706)
T 2z3z_A 300 ------LFVETDKH-------------------------------------------Y-VEPLHPLTFLPGSNNQFIWQS 329 (706)
T ss_dssp ------EEEEECSS-------------------------------------------C-CCCCSCCEECTTCSSEEEEEE
T ss_pred ------EEEccCCC-------------------------------------------e-ECccCCceeecCCCCEEEEEE
Confidence 00000000 0 11234568888 88888877
Q ss_pred e-CCeEEEEECC-CccEEEEEeCCCCCeEE-EEEecCCCcEEEEEe-CCC----cEEEEEcccceeeEEecCcCCCeEEE
Q 001159 860 S-GGKVSLFNMM-TFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGM-EDS----SVQIYNVRVDEVKTKLKGHQNRITGL 931 (1135)
Q Consensus 860 ~-dg~i~vwd~~-~~~~~~~~~~h~~~v~~-l~~sp~~~~~lasg~-~dg----~v~iwd~~~~~~~~~l~~h~~~i~~l 931 (1135)
+ ++.++||++. +++.+..+..+...+.. ++|+| +++.|+.++ .++ .|+.||+.+++ ...+. |...+.++
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~ 406 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRT 406 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEE
T ss_pred ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEE
Confidence 7 7778888775 66777788778777876 89999 777665554 444 67777777765 44454 67789999
Q ss_pred EEcCCCCeEEEEcCC----CcEEEEeCCCCc
Q 001159 932 AFSPTLNALVSSGAD----AQLCMWSIDKWE 958 (1135)
Q Consensus 932 ~~s~d~~~l~s~~~D----~~i~iwd~~~~~ 958 (1135)
+|||||++++..+.+ +.|.+||+.+++
T Consensus 407 ~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 407 QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999999988876543 459999998876
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=8.3e-21 Score=212.70 Aligned_cols=241 Identities=13% Similarity=0.137 Sum_probs=172.5
Q ss_pred CCceEEEEeecCCCEEEEEe-C-CeEEEEECC--Ccc--EEEEEeCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEc-
Q 001159 841 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV- 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~- 912 (1135)
...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+.+++|+| ++++|++++. ++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 66788899999999998887 4 899999997 554 344555444 789999999 7887766654 889999999
Q ss_pred --ccceeeEEecCcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCCC-Cceecee--eeecCCCCCCCCCCceEEEECCC
Q 001159 913 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 913 --~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
.+.+.+..+..+ ..+.+++|+||+++|++++ .++.|.+||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 445555666544 4589999999999888777 899999999987 5432211 1222222 35678999999
Q ss_pred CcEEEE-E-ecCeEEEEecCC--ce---eec---cCCCCCCCCCEEEEEEeeCCCEEEE-EeCCCeEEEEECC--C--ce
Q 001159 987 QTHLLV-V-HESQISVYDSKL--EC---SRS---WSPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAE--T--LR 1051 (1135)
Q Consensus 987 g~~l~~-~-~d~~v~vwd~~~--~~---~~~---~~~~~~h~~~i~~~~~s~d~~~l~~-~~~dg~I~vwd~~--~--~~ 1051 (1135)
|+++++ + .++.|.+|++.. .. ... +.........+.+++|+|||++|++ +..++.|.+|++. + .+
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 998776 4 578999999932 11 111 1111122346778999999998774 4579999999998 3 33
Q ss_pred eeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEe-cCCcEEEEecC
Q 001159 1052 FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1101 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~v~~W~~~ 1101 (1135)
.+..+..+ ..+..++|+| +|++|++++ .|+.|.+|++.
T Consensus 269 ~~~~~~~~-----------~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 269 KEGFQPTE-----------TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEECS-----------SSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred EeeeecCC-----------CccceEEECC-CCCEEEEecCCCCeEEEEEEc
Confidence 44333321 1255788999 678777777 68999999665
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.3e-20 Score=209.79 Aligned_cols=284 Identities=12% Similarity=0.074 Sum_probs=194.9
Q ss_pred EEecCCcc-eeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEE
Q 001159 780 IYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 858 (1135)
Q Consensus 780 ~~s~dg~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~ 858 (1135)
.|.+++.+ +++...++.|.+||.. +++....... + ...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~---~-~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQITL---G-YDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEEC---C-CCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEEc---c-CCcc-eEEEcCCCCEEEE
Confidence 45555555 5566668999998653 3333222221 2 4455 9999999997777
Q ss_pred Ee--CCeEEEEECCCccE-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEcccceeeEEecCcCCCeEEEE
Q 001159 859 AS--GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLA 932 (1135)
Q Consensus 859 ~~--dg~i~vwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~i~~l~ 932 (1135)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ..+.+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 66 68999999999987 777776766666699999 888888655553 8999999999988887754 4579999
Q ss_pred EcCCCCeEEEE-cCCCc-EEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEec-CCce
Q 001159 933 FSPTLNALVSS-GADAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS-KLEC 1007 (1135)
Q Consensus 933 ~s~d~~~l~s~-~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~~~~ 1007 (1135)
|+|||++|+++ ..++. |.+|++.....+.......... ...+..++|+|||++++++ .++.|.+||+ +++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865554 55688 9999998644322111111111 1356899999999977764 4789999999 5665
Q ss_pred ---eeccCCCCCCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEECCCcee--eeeeCCceeccccccCCCCccEEEEecCC
Q 001159 1008 ---SRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1081 (1135)
Q Consensus 1008 ---~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1081 (1135)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+........... ...-.++|+|
T Consensus 211 ~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sp- 282 (331)
T 3u4y_A 211 ITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL---FGANQMALNK- 282 (331)
T ss_dssp CEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG---TTCCCEEECT-
T ss_pred cceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc---ccccceEECC-
Confidence 444432 35667899999999776654 578899999999887 333322100000000 1112478899
Q ss_pred CCCEEEE-EecCCcEEEEecCCCc
Q 001159 1082 EPNQIAL-GMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1082 ~~~~l~s-g~~dg~v~~W~~~~~~ 1104 (1135)
|+++|++ +..++.|.+|++....
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 6677654 5556799999998766
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.9e-20 Score=206.38 Aligned_cols=275 Identities=13% Similarity=0.126 Sum_probs=194.3
Q ss_pred CCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCC-CeEEEE
Q 001159 358 QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLY 435 (1135)
Q Consensus 358 g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~d-g~i~iw 435 (1135)
++.++++++.++.|.+|++.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 334666668899999999963 321110 012366778999999999999998886 999999
Q ss_pred EeC--CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---CCeeeeeecCCCCCeeEEEeeccCC
Q 001159 436 TYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKES 510 (1135)
Q Consensus 436 d~~--~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 510 (1135)
++. ++. ......+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|+|++
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg- 140 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN- 140 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-
Confidence 998 443 22333444433 7899999999994 33455568999999994 44455555543 458889998865
Q ss_pred ccEEEEEE-cCCeEEEEeCcC-CCcee----EecC-CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC--CCeE--
Q 001159 511 IQFIFSTA-IDGKIKAWLYDY-LGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAI-- 579 (1135)
Q Consensus 511 ~~~l~s~s-~dg~i~iwd~~~-~~~~~----~~~~-~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~-- 579 (1135)
+++++++ .++.|++||+.+ ++... .... ....+..++|+|+++++++++. .++.|.+||+. +++.
T Consensus 141 -~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 141 -RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred -CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 6777776 899999999987 43321 2222 3457889999999998876652 37889999995 3433
Q ss_pred EEEeeccc-----CCceeEEEecCCCCEEEEE-eCCCeEEEEECC--C--CceEEEEeCCCCCCCcceEEEcCCCCEEEE
Q 001159 580 KRTYSGFR-----KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 580 ~~~~~~~~-----~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 649 (1135)
...+.... ...+..++|+|++++++++ ..++.|++|++. + .+.+..+..+. .+..++|+|++++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22332111 1245679999999988754 478999999998 3 34444454432 3789999999998888
Q ss_pred EE-CCCcEEEEEcC
Q 001159 650 TT-SDNGIKILANS 662 (1135)
Q Consensus 650 ~~-~dg~i~iwd~~ 662 (1135)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999654
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.3e-20 Score=208.51 Aligned_cols=301 Identities=10% Similarity=0.055 Sum_probs=204.8
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCC--cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc--
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 587 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 587 (1135)
+++++++.++.|.+||+.+.+....+..... .+..++|+|++++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5799999999999999998877766654332 4788999999998876653 36789999999999888776432
Q ss_pred --CCceeEEEecCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC
Q 001159 588 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1135)
Q Consensus 588 --~~~v~~i~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 653 (1135)
...+..++|+|+|+++++++ .++.|.+||+.+++.+..+.... .+.+++|+|++++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11466799999999998886 57999999999998888776532 46889999999988887 6
Q ss_pred CcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcc
Q 001159 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1135)
Q Consensus 654 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1135)
+.|.+||+.++ +....+..+... ....+.
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~--------------------------------------------------~~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE--------------------------------------------------AETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT--------------------------------------------------TTTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC--------------------------------------------------CCceeC
Confidence 89999999887 332222111000 001122
Q ss_pred ccccccccccc-ccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCc
Q 001159 734 VDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 812 (1135)
Q Consensus 734 ~~~~~~~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~ 812 (1135)
+++..+..... +....+ + .......++..... .....+.+|
T Consensus 183 ~dg~~l~~~~~~~~~~~~------------------------~-~~~~~~~~~~~~~~-~~~~~v~~~------------ 224 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMAT------------------------P-FYTARKDIDPADPT-AYRTGLLTM------------ 224 (337)
T ss_dssp CBCCCCCCCCTTTTEEEE------------------------E-EEEEBTTSCTTSGG-GEEEEEEEE------------
T ss_pred CCccEEeeeccCCCceee------------------------e-eecccccccccccc-ccccceEEE------------
Confidence 22222211111 000000 0 01111111110000 111134444
Q ss_pred ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEec
Q 001159 813 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 892 (1135)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp 892 (1135)
|..++......... + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|
T Consensus 225 ----------d~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 289 (337)
T 1pby_B 225 ----------DLETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST 289 (337)
T ss_dssp ----------ETTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred ----------eCCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence 55555443221211 3 5678899999999999988 799999999999988887643 4678999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcccceeeEEecCcC
Q 001159 893 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 925 (1135)
Q Consensus 893 ~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~ 925 (1135)
++++|++++.++.|++||+.+++.+..+..+.
T Consensus 290 -dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 290 -DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp -TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred -CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 88888888999999999999999888876553
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=7.1e-21 Score=208.15 Aligned_cols=257 Identities=12% Similarity=0.116 Sum_probs=190.8
Q ss_pred EEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCC-CCc
Q 001159 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 442 (1135)
Q Consensus 364 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~-~~~ 442 (1135)
.++.++.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999876542 345788999999999999999986 78999999998 765
Q ss_pred eeeeeEeecc-cCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEc--CCCeeeeeecCCCCCeeEEEeeccCCccEEE-E
Q 001159 443 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 516 (1135)
Q Consensus 443 ~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s 516 (1135)
.. ...+| ...|.+++|+|+++ +|++++ .++...||.+ .++. ...+..+. .+..++|+|++ ..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33344 36789999999999 677777 3345555554 4444 44554443 48889998865 6555 7
Q ss_pred EEcCCeEEEEeCcCC-CceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeEEEEeecccCCceeEE
Q 001159 517 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1135)
Q Consensus 517 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~i 594 (1135)
++.++.+++|+++.. .....+..+...+.+++|+|++++|++++. .++.+.+|++. .+..+..+..+.. .+..+
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344556667778999999999999887652 25567777765 4555666766654 78899
Q ss_pred EecCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCC
Q 001159 595 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1135)
Q Consensus 595 ~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 654 (1135)
+|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999987765 569999999887644443222233688999999999998887653
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.5e-19 Score=203.39 Aligned_cols=271 Identities=13% Similarity=0.136 Sum_probs=204.3
Q ss_pred cceEEEEEEecCCcceeEecc-------cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceE
Q 001159 773 SKVVVRLIYTNSGLSLLALAS-------NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 845 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~ 845 (1135)
..+ ..++|+|+|+++++++. ++.|.+|| ..+++...... . ...+.
T Consensus 41 ~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d----------------------~~~~~~~~~~~----~-~~~~~ 92 (353)
T 3vgz_A 41 KGA-YEMAYSQQENALWLATSQSRKLDKGGVVYRLD----------------------PVTLEVTQAIH----N-DLKPF 92 (353)
T ss_dssp SSE-EEEEEETTTTEEEEEECCCTTTEESEEEEEEC----------------------TTTCCEEEEEE----E-SSCCC
T ss_pred cCc-cceEECCCCCEEEEEcCCCcCCCCCccEEEEc----------------------CCCCeEEEEEe----c-CCCcc
Confidence 344 88999999998887764 45677765 34443332211 1 33467
Q ss_pred EEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCC---------eEEEEEecCCCcEEEEEe--CCCcEEEEEc
Q 001159 846 CIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPA---------ATFLAFHPQDNNIIAIGM--EDSSVQIYNV 912 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~---------v~~l~~sp~~~~~lasg~--~dg~v~iwd~ 912 (1135)
.++|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||+
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEET
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcC
Confidence 799999999777665 689999999999998888765432 78999999 777776665 4789999999
Q ss_pred ccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 913 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 913 ~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
.+++.+..+..+...+.+++|+||+++|++++.++.|.+||..+++........ ..++. ..+..++|+|||+++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~---~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKE---HFFINISLDTARQRAFI 247 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSC---CCEEEEEEETTTTEEEE
T ss_pred CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCC---cccceEEECCCCCEEEE
Confidence 999999888867777899999999999999999999999999998755432221 11111 45678999999998877
Q ss_pred E--ecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe-CCCeEEEEECCCceeeeeeCCceeccccccC
Q 001159 993 V--HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1068 (1135)
Q Consensus 993 ~--~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1068 (1135)
+ .++.|.+||. +++.+..+.... ...++|+|||+++++++ .++.|.+||+.+++.+..+...
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------- 313 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------- 313 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---------
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---------
Confidence 4 3589999999 666666554322 24689999999766555 6899999999999988776533
Q ss_pred CCCccEEEEecCCCCCEEEEEecCC
Q 001159 1069 NTAHPLVIAPHPSEPNQIALGMSDG 1093 (1135)
Q Consensus 1069 ~~~~~~~~~~~~~~~~~l~sg~~dg 1093 (1135)
..+.+++|+| +|++|+.+..++
T Consensus 314 --~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 --THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp --SEEEEEEECT-TSCEEEEEEECC
T ss_pred --CCCCeEEEcC-CCCEEEEEEccc
Confidence 3466889999 677776666654
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.6e-19 Score=202.48 Aligned_cols=247 Identities=11% Similarity=0.166 Sum_probs=169.2
Q ss_pred CCceEEEEeecCCCEEEEEe---CCeEEEEECCCcc--EEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcc-
Q 001159 841 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR- 913 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~~lasg~-~dg~v~iwd~~- 913 (1135)
...+..++|+|||++++++. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 45567899999999444443 3789999997765 4445555777899999999 888888887 78999999996
Q ss_pred cc--eeeEEecC---------cCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC-CCceeceeeeecCCCCCCCCCCceEE
Q 001159 914 VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKV 981 (1135)
Q Consensus 914 ~~--~~~~~l~~---------h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 981 (1135)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..+
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~~ 192 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRHL 192 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCceE
Confidence 23 33333322 12348899999999977777788999999998 443222111122222 346789
Q ss_pred EECCCCcEEEEE--ecCeEEEEecC--Ccee---eccCCCC---CCCCCEEEEEEeeCCCEEE-EEeCCCeEEEEECCC-
Q 001159 982 QFHNDQTHLLVV--HESQISVYDSK--LECS---RSWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAET- 1049 (1135)
Q Consensus 982 ~~s~dg~~l~~~--~d~~v~vwd~~--~~~~---~~~~~~~---~h~~~i~~~~~s~d~~~l~-~~~~dg~I~vwd~~~- 1049 (1135)
+|+|||++++++ .++.|.+|++. ...+ ..+.... .....+..++|+|||++|+ +...++.|.+|++..
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999987774 47899999983 2221 1111111 1124588999999999874 556689999999973
Q ss_pred c--eeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecC-CcEEEEec--CCCc
Q 001159 1050 L--RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP--SDAE 1104 (1135)
Q Consensus 1050 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-g~v~~W~~--~~~~ 1104 (1135)
+ +.+..+..+ ...+..++|+| ||++|++++.+ +.|.+|++ .+++
T Consensus 273 g~~~~~~~~~~~----------~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 273 GHLTLIQQISTE----------GDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GCEEEEEEEECS----------SSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CcEEEeEEEecC----------CCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 333333221 13456889999 77888777755 89999955 4454
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=8.5e-20 Score=203.86 Aligned_cols=274 Identities=8% Similarity=0.007 Sum_probs=203.6
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCc-ceEEEEEcCCCCeEEE-EeCCCeEEEEEeC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLGV-AFSKHIVHLYTYN 438 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~spd~~~las-~~~dg~i~iwd~~ 438 (1135)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|+|+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6888999999999999988765420 112222 4788999999987654 5567899999999
Q ss_pred CCCceeeeeEeec---ccCCEEEEEEecCCCeEEEEEEc------------CCCcEEEEEcCCCeeeeeecCCCCCeeEE
Q 001159 439 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1135)
Q Consensus 439 ~~~~~~~~~~l~~---h~~~v~~v~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1135)
+++.+... .+.. |...+.+++|+|+|+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88765422 1111 122577899999999 566654 579999999999988877764 4567888
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCC----------------
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 567 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1135)
+|+|++ ++++++ ++.|.+||+.+.+....+..+.. ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 898865 667776 78999999998877665554431 012378999987765542 111
Q ss_pred -------eEEEEECCCCeEEE-EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEE
Q 001159 568 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 568 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
.|.+||..+++... .+..+.. .+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 57999999988752 2223332 67789999999999988 6899999999999888887542 478999
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 640 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
|+|+|++|++++.++.|.+||+.++ +....+
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~ 317 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQV 317 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEE
Confidence 9999999999988999999999888 444444
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.4e-20 Score=222.86 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=198.6
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC-cceEEEEEcCCCCeEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las 425 (1135)
.+|++++|+|||++++.++..||++.||++.+++... +..|. ..|.+++|||| +++++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEEE
Confidence 4799999999999544444449999999997665432 33444 68999999999 77777
Q ss_pred EeC---CCeEEEEEeCC--CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 426 AFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 426 ~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
++. +....+|.+.. ..... .+..+ ..+...+|+||++.+++++++.|+. .+||+.+++.......+ .
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~-~-- 152 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLP-G-- 152 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEES-S--
T ss_pred eccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCC-C--
Confidence 765 45566766654 22222 22222 2345679999998756677766655 49999998766554433 3
Q ss_pred eEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 501 YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.+
T Consensus 153 ~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTT
T ss_pred ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCC
Confidence 788898865 899988877 78999999877654 56777788999999999999995432 2334899999999
Q ss_pred CeEEEEeecccCCceeEEE--------ecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 577 GAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++.... . ...+.+++|+ ++++++
T Consensus 228 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 228 GSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp CCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEEE
T ss_pred CcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEEE
Confidence 8887 6666554 555566 9999988888999999999999 655441 1 1357899999 999998
Q ss_pred EEECCCc---EEEEEcC
Q 001159 649 VTTSDNG---IKILANS 662 (1135)
Q Consensus 649 ~~~~dg~---i~iwd~~ 662 (1135)
+++.+.+ +.+|+..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8887644 5555543
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=231.49 Aligned_cols=377 Identities=12% Similarity=0.053 Sum_probs=238.0
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC--CceeEEEecCCCCEEEEEeC---------CCeEEE
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGD---------EFQIKF 614 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~~~~---------dg~i~i 614 (1135)
.++|+|||++++++ .++.|++||..+++....+..+.. ..+.+++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 277899999999998777765532 13889999999999998876 789999
Q ss_pred EECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc-cccccccccCCCCCCCCCCccc
Q 001159 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML-EGRAMDKNRCPSEPISSKPLTI 693 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 693 (1135)
||+.+++.+...... ..+..++|+|||+.|+++. ++.|++|++.++.. .+.. .++...
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-~~l~~~~~~~~---------------- 153 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-FQITFNGRENK---------------- 153 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-EECCCCCBTTT----------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-EEEecCCCcCC----------------
Confidence 999998763111111 2578999999999999886 67999999987732 1111 010000
Q ss_pred ccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccccc
Q 001159 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1135)
Q Consensus 694 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 773 (1135)
+..+.... ++.-. -..
T Consensus 154 ---------------------------------------------v~~g~~~~--v~~ee-----------------~~~ 169 (719)
T 1z68_A 154 ---------------------------------------------IFNGIPDW--VYEEE-----------------MLA 169 (719)
T ss_dssp ---------------------------------------------EEESSCCH--HHHHH-----------------TTC
T ss_pred ---------------------------------------------eEcccccc--eeeee-----------------ccc
Confidence 00000000 00000 001
Q ss_pred ceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCC
Q 001159 774 KVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 853 (1135)
Q Consensus 774 ~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg 853 (1135)
.. .+++|+|||+.|+.++.| +.... ..........+ ...+..+.+...|
T Consensus 170 ~~-~~~~wSPDG~~la~~~~d----------------------------~~~~~-~~~~~~~~~~~-~~~~~~~~yp~~g 218 (719)
T 1z68_A 170 TK-YALWWSPNGKFLAYAEFN----------------------------DTDIP-VIAYSYYGDEQ-YPRTINIPYPKAG 218 (719)
T ss_dssp SS-CCEEECTTSSEEEEEEEE----------------------------CTTSC-EEEEEECCSSS-SCEEEEEECCBTT
T ss_pred Cc-ccEEECCCCCEEEEEEEC----------------------------CCCCc-eEEeeccCCCC-CccceeecCCCCC
Confidence 11 578899999988877644 11111 11000011112 3445556665554
Q ss_pred CEEEEEeCCeEEEEECCCccEE--------EEEeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEE----ccccee
Q 001159 854 SYVMSASGGKVSLFNMMTFKVM--------TMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYN----VRVDEV 917 (1135)
Q Consensus 854 ~~la~~~dg~i~vwd~~~~~~~--------~~~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd----~~~~~~ 917 (1135)
.. ....+|++||+.+++.. ..+.+|...+..++||| |++++++.... ..|++|| +.+++.
T Consensus 219 ~~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 219 AK---NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp SC---CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred CC---CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 31 01347999999988753 12335777899999999 68877775433 3488999 888887
Q ss_pred eEEe----cCcCCCeE-----EEEEcCCCCeEEE--EcCCC--cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEEC
Q 001159 918 KTKL----KGHQNRIT-----GLAFSPTLNALVS--SGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 918 ~~~l----~~h~~~i~-----~l~~s~d~~~l~s--~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
...+ .+|.+.+. .++|+|||+.|+. ...++ .|.+||+.+++. ..+. .+. ..+..+.++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~lt---~~~---~~v~~~~~~ 365 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQIT---SGK---WEAINIFRV 365 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EECS---CSS---SCEEEEEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eecc---cCc---eEEEEEEEE
Confidence 6666 47777776 8999999996654 44555 466777776552 1111 111 346677777
Q ss_pred CCCcEEEE-Eec-----CeEEEEecC--Cc--eeeccCC-CCCCCCCEEEEEEeeCCCEEEEE-eCC--CeEEEEECCCc
Q 001159 985 NDQTHLLV-VHE-----SQISVYDSK--LE--CSRSWSP-KDALPAPISSAIYSCDGLLVYAG-FCD--GAIGVFDAETL 1050 (1135)
Q Consensus 985 ~dg~~l~~-~~d-----~~v~vwd~~--~~--~~~~~~~-~~~h~~~i~~~~~s~d~~~l~~~-~~d--g~I~vwd~~~~ 1050 (1135)
+++.|+. +.+ +.+++|.+. +. ....+.. ..+|...+..+.||||+++++.. +.+ ..+.+||+.++
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 8888777 443 678899872 22 1222221 12245678899999999877643 333 46899999988
Q ss_pred eeeeeeC
Q 001159 1051 RFRCRIG 1057 (1135)
Q Consensus 1051 ~~~~~~~ 1057 (1135)
+.+..+.
T Consensus 445 ~~~~~~~ 451 (719)
T 1z68_A 445 QEIKILE 451 (719)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 8665443
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=7.6e-20 Score=199.90 Aligned_cols=255 Identities=9% Similarity=0.042 Sum_probs=187.7
Q ss_pred CCccccCCCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCC-ccccccCCceeecccccccchhhhhc
Q 001159 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALL 404 (1135)
Q Consensus 326 ~~~~~~~d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1135)
...++.+|..+++......|...|.+++|+|+|+ +|++++ ++.|.+||+.+ ++.... .
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~ 79 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------D 79 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------C
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------c
Confidence 3344555555666666667889999999999999 566665 88999999998 765431 2
Q ss_pred cCC-CcceEEEEEcCCCCeEEEEe--CCCeEEEEEe--CCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcE
Q 001159 405 NDA-AISVNRCVWGPDGLMLGVAF--SKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1135)
Q Consensus 405 ~~h-~~~V~~v~~spd~~~las~~--~dg~i~iwd~--~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i 479 (1135)
.+| ...|.+++|+|||++|++++ .++...||.+ .++. .. .+..+ ..+.+++|+|+++. ++++++.|+.+
T Consensus 80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~ 153 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVF 153 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEE
T ss_pred cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCce
Confidence 233 46789999999999999998 3345555555 4433 22 33333 35999999999994 34478889999
Q ss_pred EEEEcC-CCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCc-CCCceeEecCCCCcEEEEEEcCCCCEE
Q 001159 480 KVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 480 ~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
+||++. .+.....+..|...+.+++|+|++ ..++.++ .++.+++|+++ .......+..+...+.+++|+|++++|
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp EEEEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEE
T ss_pred EEEEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEE
Confidence 999964 233445677788899999998865 6666655 59999999987 455566777777889999999999999
Q ss_pred EEEecCCC-------CCCeEEEEECCCCeEEE--EeecccCCceeEEEecCCCCEEEEEeCCC
Q 001159 557 FSCGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1135)
Q Consensus 557 ~~~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg 610 (1135)
++++.+.. ....|++||+.+++... .+.++.. .+..++|+|++++|++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 98875321 23679999999886543 3445554 788899999999999877553
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.2e-18 Score=199.93 Aligned_cols=311 Identities=14% Similarity=0.118 Sum_probs=196.5
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..+++++++..+++++.++ +++|+........ . .......+........ + .+ ...|.+++|+|+|++|
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~-~~~~~~~~~~~~~~~~----~---~~-~~~v~~l~~spdg~~l 107 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--K-PGDDPNKIVDKVQGLL----V---PM-KFPIHHLALSCDNLTL 107 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--C-TTCCTTCEEECCCCEE----E---CC-SSCEEEEEECTTSCEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhc--c-cccCcccccccCcccc----c---cC-CCcccEEEEcCCCCEE
Confidence 7899999999999988887 8888754321100 0 0000000000000000 1 13 6789999999999999
Q ss_pred E----EEe-CCeEEEEECCCc--------c---EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 857 M----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 857 a----~~~-dg~i~vwd~~~~--------~---~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
| +++ |+.|+|||+.++ + .+..+.+|...|.+++|+|+++.+||+++.||+|++||+.++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 9 566 899999998765 2 24556779999999999995489999999999999999999887777
Q ss_pred ecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC-CCCCCCceEEEECCCCcEEEEE--ecC-
Q 001159 921 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLVV--HES- 996 (1135)
Q Consensus 921 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~--~d~- 996 (1135)
..+|...|++++|+|+|++|++++.|++|++||+. ++.... +...... ......+.+++|++++.++++. .+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 77899999999999999999999999999999998 332221 1111110 0011378999999999998773 332
Q ss_pred -----eEEEEec-CCc-----eeeccCCC----CCCCCCEEEEEEeeCCCEEEEEeC-CCeEEEEECCCc---eeeeeeC
Q 001159 997 -----QISVYDS-KLE-----CSRSWSPK----DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETL---RFRCRIG 1057 (1135)
Q Consensus 997 -----~v~vwd~-~~~-----~~~~~~~~----~~h~~~i~~~~~s~d~~~l~~~~~-dg~I~vwd~~~~---~~~~~~~ 1057 (1135)
.+++|++ +.+ ....+... .+...+-..+.+-+|.+++++++. .+.|.|...... .....+.
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~ 344 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLE 344 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEEC
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecc
Confidence 3899999 321 11111110 011223233444478887666554 444666665431 1111111
Q ss_pred --CceeccccccCCCCccEEEEe--cCCC------------CCEEEEEecCCcEEEEecCC
Q 001159 1058 --PSAYIPTYAVSNTAHPLVIAP--HPSE------------PNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1058 --~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
....+|.........++.+++ +..+ -=.|..-+.||.+..|.+-.
T Consensus 345 d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 345 DSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 112223222223344444443 2211 02677778999999998765
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.6e-18 Score=194.25 Aligned_cols=274 Identities=13% Similarity=0.099 Sum_probs=190.2
Q ss_pred CCCCccccCCCcceee--EEeecCCCCeeEEEEecCCCeEEEEEec--cceEEEEEcCCccccccCCceeecccccccch
Q 001159 324 AHTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPL 399 (1135)
Q Consensus 324 g~~~~~~~~d~~~~~~--~~~~~h~~~V~~v~~sp~g~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1135)
+..+.+|.+|..++++ +....+...+..++|+|||+ +++++.. ++.|.+|++.+++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 3345566666655544 33445667889999999998 6666543 689999999766532100
Q ss_pred hhhhccCCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEeCCCCceeeeeEeec---------ccCCEEEEEEecCCCeEE
Q 001159 400 QNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLC 469 (1135)
Q Consensus 400 ~~~~~~~h~~~V~~v~~spd~~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~---------h~~~v~~v~~s~d~~~~~ 469 (1135)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ +
T Consensus 80 ---~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l 154 (347)
T 3hfq_A 80 ---TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--L 154 (347)
T ss_dssp ---EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--E
T ss_pred ---eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--E
Confidence 0233567788999999999998888 689999999974433333323321 123488999999999 7
Q ss_pred EEEEcCCCcEEEEEcC-CCeee--eeecCC-CCCeeEEEeeccCCccEEEE-EEcCCeEEEEeCcC--CCce--eEecCC
Q 001159 470 IVTCGDDKMIKVWDVV-AGRKQ--YTFEGH-EAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDY--LGSR--VDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~-~~~~~--~~~~~h-~~~v~~i~~~~~~~~~~l~s-~s~dg~i~iwd~~~--~~~~--~~~~~~ 540 (1135)
+++...++.|++||+. +++.. ..+..+ ...+..++|+|++ +++++ +..++.|.+|+++. ++.. ..+...
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 8888889999999998 55432 222222 3367789998865 65544 56789999999885 2221 122221
Q ss_pred C------CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC---CeEEEEeecccCCceeEEEecCCCCEEEEEeC-CC
Q 001159 541 G------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF 610 (1135)
Q Consensus 541 ~------~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg 610 (1135)
. ..+..++|+|||++|+++.. .++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCC
Confidence 1 45889999999998876542 377899999872 245555555443 5788999999999888775 48
Q ss_pred eEEEE--ECCCCceE
Q 001159 611 QIKFW--DMDNMNML 623 (1135)
Q Consensus 611 ~i~iw--d~~~~~~~ 623 (1135)
.|.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=1.1e-18 Score=200.19 Aligned_cols=220 Identities=14% Similarity=0.108 Sum_probs=160.1
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE--
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-- 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la-- 424 (1135)
..++.+++++++. ++++|+.+| |+||+........... .+... ...........+...|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 677788777 8998864321110000 00000 00000001123567899999999999999
Q ss_pred --EEeCCCeEEEEEeCCC--------CceeeeeEeecccCCEEEEEEecC-CCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 425 --VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 425 --s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999999764 222234456789999999999998 56 8999999999999999999877777
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC-------CCcEEEEEEcCCCCEEEEEecCC---
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK--- 563 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~--- 563 (1135)
.+|...|.+++|+|++ .+|++|+.||+|++||++ ......+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 7899999999999864 899999999999999998 4444444333 23899999999988887554321
Q ss_pred CCCCeEEEEECCCC
Q 001159 564 EGESHLVEWNESEG 577 (1135)
Q Consensus 564 ~~~~~i~~wd~~~~ 577 (1135)
+....+++|++...
T Consensus 266 ~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 266 ETSPDVVMALLPKK 279 (434)
T ss_dssp SSCCEEEEEECCCT
T ss_pred CCCCceEEEEeccC
Confidence 11234899999864
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=226.07 Aligned_cols=317 Identities=8% Similarity=0.056 Sum_probs=214.0
Q ss_pred eeeecCCCCCC------ccccCCCcceeeEEeecCCC----CeeEEEEecCCCeEEEEEec---------cceEEEEEcC
Q 001159 317 EVSFAGVAHTP------NVYSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEVG 377 (1135)
Q Consensus 317 ~v~~s~~g~~~------~~~~~d~~~~~~~~~~~h~~----~V~~v~~sp~g~~lla~g~~---------dg~i~iwd~~ 377 (1135)
++.|+|+|+.+ .++.++..+++....+.+.. .|.+++|||||++ ||+++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECC
Confidence 35555655322 23444555666666666332 4999999999995 555554 6899999999
Q ss_pred CccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCE-
Q 001159 378 SRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV- 456 (1135)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v- 456 (1135)
+++.+... .....+.+++|||||+.||++. ++.|++|++.+++.... ...++...|
T Consensus 99 ~g~~~~~~--------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~ 155 (719)
T 1z68_A 99 NGEFVRGN--------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIF 155 (719)
T ss_dssp TTEECCSS--------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEE
T ss_pred CCccccce--------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeE
Confidence 88763210 0124588999999999999986 78999999988765431 112333323
Q ss_pred ----------------EEEEEecCCCeEEEEEEcCCC----------------------------------cEEEEEcCC
Q 001159 457 ----------------NDIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVVA 486 (1135)
Q Consensus 457 ----------------~~v~~s~d~~~~~l~s~~~d~----------------------------------~i~iwd~~~ 486 (1135)
.+++|||||+ .|++++.|. .|++||+.+
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred cccccceeeeecccCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 4899999999 677766542 789999988
Q ss_pred Ceee--------eeecCCCCCeeEEEeeccCCccEEEEEEcC----CeEEEEe----CcCCCceeEe----cCCCCcEE-
Q 001159 487 GRKQ--------YTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT- 545 (1135)
Q Consensus 487 ~~~~--------~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~- 545 (1135)
++.. ..+.+|...+.+++|+|+ +.++++.... ..|.+|| ..+++....+ ..+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG 311 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence 7753 224468889999999997 3677764432 2488888 6665554444 35555565
Q ss_pred ----EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEE
Q 001159 546 ----MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWD 616 (1135)
Q Consensus 546 ----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd 616 (1135)
.++|+|||+.++....+.++...|++||+.+++ ...+..+.. .+..+.++ +++.++..+.+ +..++|.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 789999999877644444556789999988776 445554443 56677777 88888776654 7888888
Q ss_pred CCC--Cc-eEEEEeCC--CCCCCcceEEEcCCCCEEEEEE-CC--CcEEEEEcCCC
Q 001159 617 MDN--MN-MLTTVDAD--GGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 664 (1135)
Q Consensus 617 ~~~--~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~ 664 (1135)
+.. +. ....+... .+...+..+.|+|++++++... .. ..+.+||+.++
T Consensus 389 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 389 ISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 754 32 12333321 1223567899999998877543 32 46889988776
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.2e-18 Score=193.50 Aligned_cols=293 Identities=10% Similarity=0.025 Sum_probs=196.2
Q ss_pred CccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc-
Q 001159 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR- 587 (1135)
Q Consensus 510 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~- 587 (1135)
++.++++++.++.|++||+.+++....+..+. ..+..++|+|++++++++.. .++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccc
Confidence 44789999999999999999887776665443 25678999999998776542 47889999999999888776433
Q ss_pred ----CCceeEEEecCCCCEEEEEeCC------------CeEEEEECCCCce---EEEEeCCCCCCCcceEEEcCCCCEEE
Q 001159 588 ----KRSLGVVQFDTTRNRFLAAGDE------------FQIKFWDMDNMNM---LTTVDADGGLPASPRLRFNKEGSLLA 648 (1135)
Q Consensus 588 ----~~~v~~i~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~ 648 (1135)
...+..++|+|+|+++++++.+ +.|.+||+.+++. +.....+. .+.+++|+|+|+ ++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGS-LY 162 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSC-EE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCCCc-EE
Confidence 2237789999999999998865 8999999988443 34443332 578999999999 55
Q ss_pred EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccC
Q 001159 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+++ +.|.+||..++ +....+........
T Consensus 163 ~~~--~~i~~~d~~~~-~~~~~~~~~~~~~~------------------------------------------------- 190 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTG-KYTVALPLRNWNRK------------------------------------------------- 190 (349)
T ss_dssp EES--SSEEEECTTTC-CEEEEECSTTCCCT-------------------------------------------------
T ss_pred Ecc--CcEEEEeCCCC-ceeccccccccCCc-------------------------------------------------
Confidence 554 34999999887 33322211100000
Q ss_pred CCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee-----------Eeccccee
Q 001159 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL-----------ALASNAVH 797 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~-----------~~~~dg~i 797 (1135)
.. .....+.+|...... .. .... ..+++++++.... ....++.+
T Consensus 191 -~~----------~~~~~~~~~~~~~~~---~~----------~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
T 1jmx_B 191 -GY----------SAPDVLYFWPHQSPR---HE----------FSML-YTIARFKDDKQDPATADLLYGYLSVDLKTGKT 245 (349)
T ss_dssp -TB----------CCCBCCCCCCCCCTT---CE----------EEEE-EEEEEC-------CCCEEEEEEEEEETTTCCE
T ss_pred -cc----------cCccceeeecCCCcc---ee----------EEee-eeeeecCCCcCCccccccceeEEEEeccCCcE
Confidence 00 000112223221100 00 0011 4566665543221 11122333
Q ss_pred eeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeec-CCCEEEEEeCCeEEEEECCCccEEE
Q 001159 798 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKVMT 876 (1135)
Q Consensus 798 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~-dg~~la~~~dg~i~vwd~~~~~~~~ 876 (1135)
++|++. . + ...+..++++| ||++++++ ++.|.+||+.+++.+.
T Consensus 246 ~~~~~~--------------------------------~--~-~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~ 289 (349)
T 1jmx_B 246 HTQEFA--------------------------------D--L-TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIK 289 (349)
T ss_dssp EEEEEE--------------------------------E--C-SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEE
T ss_pred Eecccc--------------------------------c--C-CCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEE
Confidence 333221 1 2 56788999999 99999998 8999999999999888
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
.+.. ...+.+++|+| ++++|++++.++.|++||+.+++.+..+...
T Consensus 290 ~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 290 AANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEcC-CCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8763 34578999999 7888888888999999999999988887654
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=6.5e-18 Score=209.40 Aligned_cols=380 Identities=10% Similarity=0.019 Sum_probs=241.6
Q ss_pred EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc--e--eEEEecCCCCEEEEEeCC---------C
Q 001159 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS--L--GVVQFDTTRNRFLAAGDE---------F 610 (1135)
Q Consensus 544 i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v--~~i~~s~~~~~l~~~~~d---------g 610 (1135)
..+++|+|||++++++ ++.|++||+.+++....+.++.... + ..++|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888874 5789999999999888887775421 2 347899999999998875 5
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCC
Q 001159 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+||+.+++... +..+ ...+..++|||||+.||.+. ++.|++|+..++....-+..++...+.
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~----------- 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIY----------- 157 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEE-----------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCcccee-----------
Confidence 67799999987543 3332 33689999999999999885 579999999877311111111100000
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcc
Q 001159 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 770 (1135)
.+. .-.+|.-.
T Consensus 158 --------------------------------------------------~g~--~~~v~~ee----------------- 168 (740)
T 4a5s_A 158 --------------------------------------------------NGI--TDWVYEEE----------------- 168 (740)
T ss_dssp --------------------------------------------------ESB--CCHHHHHH-----------------
T ss_pred --------------------------------------------------cCc--ccccccch-----------------
Confidence 000 00000000
Q ss_pred cccceEEEEEEecCCcceeEeccc-ceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEe
Q 001159 771 AASKVVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
-.... ..+.|||||+.|+....| +.+.+|++..... +. .+ ...+..+.|
T Consensus 169 ~~~~~-~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~-~~~~~~~~y 218 (740)
T 4a5s_A 169 VFSAY-SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQ-YPKTVRVPY 218 (740)
T ss_dssp TSSSS-BCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CS-SCEEEEEEC
T ss_pred hcCCC-cceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CC-CCcceeecC
Confidence 00111 568999999999988765 4488887642110 00 02 456677888
Q ss_pred ecCCCEEEEEeCCeEEEEECCC---cc--EEEEEe------CCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEccc
Q 001159 850 SKNDSYVMSASGGKVSLFNMMT---FK--VMTMFM------SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRV 914 (1135)
Q Consensus 850 s~dg~~la~~~dg~i~vwd~~~---~~--~~~~~~------~h~~~v~~l~~sp~~~~~lasg~~----dg~v~iwd~~~ 914 (1135)
.+.|..-. ..+|++||+.+ ++ ....+. +|...+..++||| ||++++.... +..|++||+.+
T Consensus 219 p~~G~~~~---~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 219 PKAGAVNP---TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CBTTSCCC---EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCCcCcCC---eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCC
Confidence 87775311 24799999998 73 223343 3777799999999 7887666543 34799999998
Q ss_pred ce----ee--EEe--cCcCCCeE-----EEEEcCCCCeEE-EEcC-C--CcEEEEeCCCCceeceeeeecCCCCCCCCCC
Q 001159 915 DE----VK--TKL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 977 (1135)
Q Consensus 915 ~~----~~--~~l--~~h~~~i~-----~l~~s~d~~~l~-s~~~-D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1135)
++ +. ..+ .+|.+.|. .++|||||+.|+ ..+. + ..|.+||+.+++.. +...+. ..
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~----~~ 365 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT----WE 365 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS----SC
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC----EE
Confidence 87 22 222 45665554 789999999877 6653 3 35888888876532 222222 34
Q ss_pred ceEEEECCCCcEEEE-Eec-----CeEEEEec--CCceee-ccCCC-CCCCCCEEEEEEeeCCCEEEEEeCC---CeEEE
Q 001159 978 ETKVQFHNDQTHLLV-VHE-----SQISVYDS--KLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIGV 1044 (1135)
Q Consensus 978 v~~~~~s~dg~~l~~-~~d-----~~v~vwd~--~~~~~~-~~~~~-~~h~~~i~~~~~s~d~~~l~~~~~d---g~I~v 1044 (1135)
+..+. .+|++.|+. +.. +...||.+ .+.... .+... .........+.||||+++++..... ..+.+
T Consensus 366 v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l 444 (740)
T 4a5s_A 366 VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (740)
T ss_dssp EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEE
Confidence 44443 245776666 432 23445544 443322 23221 1124568899999999987755433 46889
Q ss_pred EECCCceeeeeeC
Q 001159 1045 FDAETLRFRCRIG 1057 (1135)
Q Consensus 1045 wd~~~~~~~~~~~ 1057 (1135)
++..+++.+..+.
T Consensus 445 ~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 445 HSSVNDKGLRVLE 457 (740)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCCcEEEEec
Confidence 9998887665543
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=4.9e-18 Score=193.73 Aligned_cols=299 Identities=10% Similarity=0.013 Sum_probs=198.0
Q ss_pred ceeeEEeec-CCCCeeE-----EEEecCCCeEEEEEeccc--eEEEEEcCCccccccCCceeecccccccchhhhhccCC
Q 001159 336 TKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1135)
Q Consensus 336 ~~~~~~~~~-h~~~V~~-----v~~sp~g~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1135)
++.....+. +...+.. ++|||||+++++++..+| .|.+||+.+++.... ..++
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~ 79 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGR 79 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSS
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCC
Confidence 344444444 5555555 899999996655554467 488889888765431 3345
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEE--EecCCCeEEEEE-------------
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVT------------- 472 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~--~s~d~~~~~l~s------------- 472 (1135)
...+..++|||||+.|++++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTD 154 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCS
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccc
Confidence 5556678899999999999999999999999986543 3344555454444 489998 5553
Q ss_pred ---------EcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec-cCCccEEEEEEcC------CeEEEEeCcCCCceeE
Q 001159 473 ---------CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSRVD 536 (1135)
Q Consensus 473 ---------~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~ 536 (1135)
.+.+..|.+||+.+++.. .+..+...+..+.|+| ++ ..|+.++.+ ..|.++|....... .
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 230 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMR-K 230 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCE-E
T ss_pred cchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceE-E
Confidence 234578999999988654 4445677889999988 65 777776653 36777777654433 3
Q ss_pred ecCCC--CcEEEEEEcCCCCEEEEEecCCC-CCCeEEEEECCCCeEEE--EeecccC--CceeEEEecCCCCEEEEE---
Q 001159 537 YDAPG--NWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNESEGAIKR--TYSGFRK--RSLGVVQFDTTRNRFLAA--- 606 (1135)
Q Consensus 537 ~~~~~--~~i~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~--~~~~~~~--~~v~~i~~s~~~~~l~~~--- 606 (1135)
+..+. ..+..++|+|||+.|+..+.... .+..|++||+.+++... .+.++.. .....+.|+|||+.|+..
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 310 (388)
T 3pe7_A 231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD 310 (388)
T ss_dssp SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence 33333 35788999999998876553211 12359999999887433 3333110 001123689999988754
Q ss_pred ------eCCCeEEEEECCCCceEEEEeCCCCCC--------CcceEEEcCCCCEEEEEEC-CCcEEEEEcC
Q 001159 607 ------GDEFQIKFWDMDNMNMLTTVDADGGLP--------ASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1135)
Q Consensus 607 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 662 (1135)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 311 DSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp ------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 456789999999877644333222110 3678899999998887764 6777777654
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=4.4e-19 Score=214.08 Aligned_cols=237 Identities=15% Similarity=0.130 Sum_probs=177.2
Q ss_pred CCcceEEEEEcCCCCeEEEEeC-CCeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEcC---CCcEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~~---d~~i~i 481 (1135)
+..+|.+++|+|||++||+++. ||++.||++.++... .+..|. ..+.+++|+|| + ++++++. +...++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3557999999999999999887 999999999765432 344555 58999999999 5 6776664 555666
Q ss_pred EEcCC---CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEE
Q 001159 482 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 482 wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 558 (1135)
|.+.. +... .+.... .+...+|+|++++..+++++.++.. +||+.+++.......+. .+++|+|||++|++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 65543 3332 443222 3446688888765566665555554 99998876554443333 78899999999998
Q ss_pred EecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCCCCcc
Q 001159 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 636 (1135)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1135)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cChh
Confidence 7754333477999999988765 5666655 789999999999999888888 8999999998877 554432 2566
Q ss_pred eEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001159 637 RLR--------FNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 637 ~~~--------~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
.++ |+|||.++++++.++++++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999998
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=1.8e-18 Score=194.23 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=179.8
Q ss_pred EEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEE-EEEeCCCcEEEEEcccceeeEEec
Q 001159 846 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l-asg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
.++++++++++++++ +++|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888888 8999999999999988887543 2578999999 77655 555678999999999998887776
Q ss_pred CcC------CCeEEEEEcCCCCeEEEEcCC------------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEEC
Q 001159 923 GHQ------NRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 984 (1135)
Q Consensus 923 ~h~------~~i~~l~~s~d~~~l~s~~~D------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 984 (1135)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++...... ....+ ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--eccCC----CcccceeEC
Confidence 332 337899999999999998865 899999999865332211 11111 247789999
Q ss_pred CCCcEEEEEecCeEEEEec-CCceeeccCCCC-C----------------------------------------------
Q 001159 985 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD-A---------------------------------------------- 1016 (1135)
Q Consensus 985 ~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~-~---------------------------------------------- 1016 (1135)
|||+ ++++ ++.|.+||. +++....+.... .
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5554 445999999 666554433221 0
Q ss_pred ------------------CCCCEEEEEEee-CCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEE
Q 001159 1017 ------------------LPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1077 (1135)
Q Consensus 1017 ------------------h~~~i~~~~~s~-d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
+...+.+++|+| ||++++++ ++.|.+||+.+++.+..+... ..+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-----------HTYYCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------CCccceE
Confidence 012456778889 99999888 889999999999988776532 2244788
Q ss_pred ecCCCCCEEEEEecCCcEEEEecCCCccccCC
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~~~ 1109 (1135)
|+| ++++|++++.++.|.+||+.+++.....
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6777888889999999999988754433
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=3.1e-17 Score=184.89 Aligned_cols=302 Identities=11% Similarity=0.079 Sum_probs=187.6
Q ss_pred CCCCEEEEEecCCCCCCeEEEEEC--CCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC----CeEEEEECCC--Cce
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNM 622 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~ 622 (1135)
+...++++++.....++.|++|++ .+++.......+ ......++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 334456666654444667888865 566554333333 3367779999999999998875 7999998875 443
Q ss_pred --EEEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCc
Q 001159 623 --LTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1135)
Q Consensus 623 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 699 (1135)
+.....+. .....+++ ++++|++++ .++.|.+|++.....+ ..+..... ..|.
T Consensus 90 ~~~~~~~~~~--~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~------------------~~g~- 145 (361)
T 3scy_A 90 HLLNTQKTMG--ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL-LPASDVIE------------------FKGS- 145 (361)
T ss_dssp EEEEEEECSS--SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB-CSCSEEEE------------------CCCC-
T ss_pred EEeeEeccCC--CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC-cccceeEE------------------ccCC-
Confidence 22333222 24566777 788777776 5789999998654111 11100000 0000
Q ss_pred cccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEE
Q 001159 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRL 779 (1135)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 779 (1135)
+ + .+...+...+ .++
T Consensus 146 ---------------------------------------------~------------~-------~~~~~~~~~~-~~~ 160 (361)
T 3scy_A 146 ---------------------------------------------G------------P-------DKERQTMPHL-HCV 160 (361)
T ss_dssp ---------------------------------------------C------------S-------CTTTCSSCCE-EEE
T ss_pred ---------------------------------------------C------------C-------CccccCCCcc-eEE
Confidence 0 0 0000012234 789
Q ss_pred EEecCCcceeEecc-cceeeeEEeccccCCCCCc-ccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEE
Q 001159 780 IYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 857 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la 857 (1135)
+|+|||+++++++. ++.+.+|++.........+ .... +........ + ...+..++|+|||++++
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEE
Confidence 99999997766554 7899999875321100000 0000 000001111 2 55678999999999888
Q ss_pred EEe--CCeEEEEECCCccE--EEEEe---CCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEEcc--cce--eeEEecCc
Q 001159 858 SAS--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVR--VDE--VKTKLKGH 924 (1135)
Q Consensus 858 ~~~--dg~i~vwd~~~~~~--~~~~~---~h~~~v~~l~~sp~~~~~lasg~~d--g~v~iwd~~--~~~--~~~~l~~h 924 (1135)
+++ ++.|.+|++.+++. +..+. .+......++|+| ++++|+++..+ +.|.+|++. +++ .+..+..
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~- 304 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT- 304 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-
Confidence 776 78999999987754 33333 2334578999999 88888666654 899999996 444 4445554
Q ss_pred CCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCC--CCc
Q 001159 925 QNRITGLAFSPTLNALVSSG-ADAQLCMWSID--KWE 958 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~--~~~ 958 (1135)
...+.+++|+|||++|++++ .++.|.+|+++ +++
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 56788999999999888877 67899996554 554
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=5.7e-18 Score=209.89 Aligned_cols=274 Identities=11% Similarity=0.109 Sum_probs=184.9
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC-----cceEEEEEcCCCCe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-----ISVNRCVWGPDGLM 422 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~spd~~~ 422 (1135)
...++.|+|||+ +++++ ||.|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999997 67776 89999999999875421 23333 23345899999999
Q ss_pred EEEEeCC---------CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-
Q 001159 423 LGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT- 492 (1135)
Q Consensus 423 las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 492 (1135)
|++++.+ +.+.+||+.+++.. .+..|...+..++|||||+ .||.+. |+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 56779999997543 3556788899999999999 567664 78999999988775432
Q ss_pred ecCCCCCe-----------------eEEEeeccCCccEEEEEEcCCe-EEEEeCcCCCceeEecCCCCcEEEEEEcCCCC
Q 001159 493 FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 493 ~~~h~~~v-----------------~~i~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
..++...+ .++.|+|++ +.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333222 347898854 88888876655 8888764322110 1233556677777664
Q ss_pred EEEEEecCCCCCCeEEEEECCC---Ce--EEEEeec------ccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCC
Q 001159 555 RLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG------FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDN 619 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~ 619 (1135)
. .....|++||+.+ ++ ....+.. +.. .+..++|+|||+.++... .+..|++||+.+
T Consensus 224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 3 1244699999998 73 2233332 333 688999999998766643 234799999998
Q ss_pred Cc----eE--EEE--eCCCCCCC---cceEEEcCCCCEEE-EEEC-C--CcEEEEEcCCC
Q 001159 620 MN----ML--TTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-D--NGIKILANSDG 664 (1135)
Q Consensus 620 ~~----~~--~~~--~~~~~~~~---v~~~~~~~~~~~l~-~~~~-d--g~i~iwd~~~~ 664 (1135)
++ +. ..+ ..+..... ....+|+|||+.++ ..+. + ..|.+|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 87 11 111 22222111 23789999999887 6654 3 35677776654
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1e-16 Score=180.55 Aligned_cols=245 Identities=12% Similarity=0.126 Sum_probs=172.9
Q ss_pred CCcceEEEEEcCCCCeEEEEeCC----CeEEEEEeCCC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEE
Q 001159 407 AAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1135)
Q Consensus 407 h~~~V~~v~~spd~~~las~~~d----g~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~i 481 (1135)
+...+..++|+|||++|++++.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEE
Confidence 56677889999999999999886 79999999864 334434344445667788888 7774 4455557899999
Q ss_pred EEcCCCeeeeee------cC--------CCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCcCCCc------e------
Q 001159 482 WDVVAGRKQYTF------EG--------HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS------R------ 534 (1135)
Q Consensus 482 wd~~~~~~~~~~------~~--------h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~------~------ 534 (1135)
|++.....+..+ .+ +...+.+++|+|++ +++++++ .++.|.+|+++.... .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754333221 11 12345789998865 6555554 589999999886542 1
Q ss_pred -eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--EEEeeccc--CCceeEEEecCCCCEEEEEeC-
Q 001159 535 -VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD- 608 (1135)
Q Consensus 535 -~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~i~~s~~~~~l~~~~~- 608 (1135)
.........+..++|+|||++++++.. .++.|.+||+.++.. +..+.... ......++|+|||++|+++..
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 222334556789999999999887762 377899999987765 33333221 124678999999999977665
Q ss_pred -CCeEEEEECC--CCc--eEEEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcC
Q 001159 609 -EFQIKFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 609 -dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 662 (1135)
++.|.+|++. +++ .+..+.. . ..+..++|+|+|++|++++ .++.|.+|++.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4899999996 444 3444443 2 2578999999999988887 57899997654
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.5e-17 Score=187.48 Aligned_cols=251 Identities=14% Similarity=0.113 Sum_probs=169.0
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECC-CccEEEEEeCC-CCCeEEEEEecCCCc--EEEEEe-------------C
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMSP-PPAATFLAFHPQDNN--IIAIGM-------------E 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~h-~~~v~~l~~sp~~~~--~lasg~-------------~ 903 (1135)
...+..++|+|||++|++++.+.|.+|++. ++++....... .+...+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346778999999999998884499999997 77765443211 12356789999 788 455553 6
Q ss_pred CCcEEEEEcc-cceeeEEec----CcCCCeEEEEEcCCCCeEEEEc-CCCcEEEEeCC-CCceeceeeeecCCCCCCCCC
Q 001159 904 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 976 (1135)
Q Consensus 904 dg~v~iwd~~-~~~~~~~l~----~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 976 (1135)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|.+|+++ +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466544443 2556799999999999888765 46789999998 66532211121111 11 3
Q ss_pred CceEEEECCCCcEEEEEe--cCeEEEEec---CCcee------eccCCC-CCCCC------CEEEEE-EeeCCCEEEEEe
Q 001159 977 GETKVQFHNDQTHLLVVH--ESQISVYDS---KLECS------RSWSPK-DALPA------PISSAI-YSCDGLLVYAGF 1037 (1135)
Q Consensus 977 ~v~~~~~s~dg~~l~~~~--d~~v~vwd~---~~~~~------~~~~~~-~~h~~------~i~~~~-~s~d~~~l~~~~ 1037 (1135)
.+..++|+|||++++++. ++.|.+|++ +++.. ..+... .+|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998853 689999987 23331 112111 12222 488999 999999988776
Q ss_pred CCC------eEEEEECC-CceeeeeeCCceeccccccCCCCccEEEEecCC--CCCEEEEEecC-CcEEEEecCCC
Q 001159 1038 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1103 (1135)
Q Consensus 1038 ~dg------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~d-g~v~~W~~~~~ 1103 (1135)
.+. .|.+|+++ +|++...... .+. ....+..++|+|. ||++|++++.+ ++|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~---~~~----~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFL---SPT----PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEE---EEC----SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeee---eec----CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 433 89999996 6664431110 000 0112235677775 57889888865 89999998765
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.6e-16 Score=177.67 Aligned_cols=312 Identities=10% Similarity=0.087 Sum_probs=207.3
Q ss_pred CccEEEEEE------cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec------CCCCCCeEEEEECCCC
Q 001159 510 SIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEG 577 (1135)
Q Consensus 510 ~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~ 577 (1135)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 345555543 4789999999888877766655444 8999999999998752 1123567999999999
Q ss_pred eEEEEeeccc-----CCceeEEEecCCCCEEEEEeC--CCeEEEEECCCCceEEE-EeCCCCCCCcceEEEcCCC-CEEE
Q 001159 578 AIKRTYSGFR-----KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLA 648 (1135)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~i~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~ 648 (1135)
+.+..+.... ......++++|||++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9988876431 124567999999999998863 68999999999988887 65321 2335677765 6778
Q ss_pred EEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccC
Q 001159 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1135)
Q Consensus 649 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1135)
+.+.||.+.+|+........... +.
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~--~~----------------------------------------------------- 192 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQS--RS----------------------------------------------------- 192 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEE--EC-----------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeec--cc-----------------------------------------------------
Confidence 88999999999876521211000 00
Q ss_pred CCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCC
Q 001159 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 808 (1135)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~ 808 (1135)
..+|+... .. ..+.+++++..++..+.++.+.++|+......
T Consensus 193 ------------------~~~~~~~~------------------~~--~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~ 234 (361)
T 2oiz_A 193 ------------------KQMFSVKD------------------DP--IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK 234 (361)
T ss_dssp ------------------CCCSCTTT------------------SC--BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE
T ss_pred ------------------cceEcCCC------------------Cc--eEEEecccCCEEEEEeCCCeEEEEEecCCCce
Confidence 00111100 00 11122344444555555666777665321100
Q ss_pred CCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe------------CCeEEEEECCCccEEE
Q 001159 809 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMT 876 (1135)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~ 876 (1135)
. +..|............ . ......++|+||++.+.++. .++|.+||+.+++.+.
T Consensus 235 ~---------~~~~~~~~~~~~~~~~----~-p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~ 300 (361)
T 2oiz_A 235 V---------DGPWSLLNDEDKAKNW----V-PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA 300 (361)
T ss_dssp E---------EEEEESCCHHHHHTTC----E-ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE
T ss_pred e---------cccccccCcccccccc----c-cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE
Confidence 0 0011111100000000 0 11112378999988777653 2479999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc--eeeEEecCcCCCeEEEEEcCCCC
Q 001159 877 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 938 (1135)
Q Consensus 877 ~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d~~ 938 (1135)
++..+. +.+++|+| |+++|+++.. +.|.+||..++ +.+..+..+......++++|||.
T Consensus 301 ~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 301 RIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 998877 99999999 8889988887 99999999999 99999877888899999999986
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.3e-17 Score=190.20 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=173.9
Q ss_pred ccCCCcceEE-----EEEcCCCCeEEEEeC-CC--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC
Q 001159 404 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1135)
Q Consensus 404 ~~~h~~~V~~-----v~~spd~~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~ 475 (1135)
+..|...... .+|||||++|++++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4445555555 899999999999987 66 48888988875433 2345555555778999999 7888888
Q ss_pred CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE----------------------cCCeEEEEeCcCCCc
Q 001159 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 533 (1135)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s----------------------~dg~i~iwd~~~~~~ 533 (1135)
++.|++||+.+++....+..+...+....|..+.++..++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877776666666555554344557776432 347899999988754
Q ss_pred eeEecCCCCcEEEEEEcC-CCCEEEEEecCCC--CCCeEEEEECCCCeEEEEeecccC-CceeEEEecCCCCEEEEEeC-
Q 001159 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 608 (1135)
Q Consensus 534 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~~~~- 608 (1135)
. .+..+...+..++|+| ||+.|+.+..... ....|+++|...+... .+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 4 3444556789999999 9999987764211 1447889998765543 3433332 25778899999998766442
Q ss_pred CC----eEEEEECCCCceEEEEeCCCC--C-CCcceEEEcCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001159 609 EF----QIKFWDMDNMNMLTTVDADGG--L-PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 664 (1135)
Q Consensus 609 dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~ 664 (1135)
++ .|++||+.+++.......... . .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 399999999875433222210 0 012335799999988864 44668999998876
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1.5e-16 Score=179.14 Aligned_cols=247 Identities=10% Similarity=0.084 Sum_probs=173.0
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCeEEEEEeC-CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc------------
Q 001159 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 474 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las~~~dg~i~iwd~~-~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~------------ 474 (1135)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467889999999999999888 99999997 654332 1121111 235568999999853355553
Q ss_pred -CCCcEEEEEcC-CCeeeeeec----CCCCCeeEEEeeccCCccEEEEEE-cCCeEEEEeCc-CCCcee--Eec--CCCC
Q 001159 475 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 542 (1135)
Q Consensus 475 -~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~--~~~--~~~~ 542 (1135)
.++++.+|++. +++....+. .+...+.+++|+|++ +++++++ .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 466544443 245679999998865 7777665 46899999998 554432 233 2356
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC--CCeEE---EEeeccc----C-C-------ceeEEE-ecCCCCEEE
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIK---RTYSGFR----K-R-------SLGVVQ-FDTTRNRFL 604 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~i~-~s~~~~~l~ 604 (1135)
.+..++|+|||++++++.. .++.|.+|+.. +++.. ..+.... + . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988763 36789998764 56543 2222211 1 1 377899 999999988
Q ss_pred EEeCC-C-----eEEEEECC-CCceEEE---EeCCCCCCCcceEEEcC---CCCEEEEEEC-CCcEEEEEcCCC
Q 001159 605 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTS-DNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~~~---~~~~l~~~~~-dg~i~iwd~~~~ 664 (1135)
++..+ + .|.+|++. +++.... ...+. ..+..++|+| +|++|++++. ++.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76533 2 89999996 5665432 22222 2467899999 8999999886 489999998655
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=1.2e-16 Score=182.86 Aligned_cols=282 Identities=8% Similarity=-0.042 Sum_probs=185.3
Q ss_pred eeEEEEecCCCeEEEEEecc--ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 349 VMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 349 V~~v~~sp~g~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
+.+++|||||++++++...+ ..|.+||+.+++.... ..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecCCCCccccceECCCCCEEEEE
Confidence 78899999999766655443 3788889888764321 11222223347899999999999
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEE-------------------EEEecCCCeEEEEEE-----cCCCcEEEE
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQLCIVTC-----GDDKMIKVW 482 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------v~~s~d~~~~~l~s~-----~~d~~i~iw 482 (1135)
+.++.|++||+.+++... ....+...... +.|+|+++ .++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS--WEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS--HHHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc--ceeeeeeccCCCcceEEEE
Confidence 999999999998876432 22223332222 35677777 33332 456789999
Q ss_pred EcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCceeEecCC-CCcEEEEEEcCCCCE
Q 001159 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTR 555 (1135)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~ 555 (1135)
|+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..++|+|||++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 99988765444 46778899999883 22556665543 36888888655433322221 336888999999998
Q ss_pred EEEEecCCC-CCCeEEEEECCCCeEEEEeecccCCceeEEEecC-CCCEEEEEe----------------CCCeEEEEEC
Q 001159 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG----------------DEFQIKFWDM 617 (1135)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~~~----------------~dg~i~iwd~ 617 (1135)
|+..+.... ..+.|++||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887654211 1245999999988764433221 223 88999 999888754 3478999999
Q ss_pred CCCceEEEEeCCCCC---------CCcceEEEcCCCCEEEEEEC-CCcEEEEEc
Q 001159 618 DNMNMLTTVDADGGL---------PASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1135)
Q Consensus 618 ~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 661 (1135)
.+++... +..+... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 8877543 3322210 02466899999998887775 455555543
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=1.8e-15 Score=169.04 Aligned_cols=301 Identities=13% Similarity=0.186 Sum_probs=196.2
Q ss_pred CCCCEEEEEecC--CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----------CCCeEEEEECC
Q 001159 551 ADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMD 618 (1135)
Q Consensus 551 ~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----------~dg~i~iwd~~ 618 (1135)
++++++++.... ...++.|++||..+++.+..+..... + .++|+|||++++++. .++.|.+||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 356666655321 11367899999999999888877654 3 799999999999986 36789999999
Q ss_pred CCceEEEEeCCCC----CCCcceEEEcCCCCEEEEEEC--CCcEEEEEcCCCchhhhh-ccccccccccCCCCCCCCCCc
Q 001159 619 NMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRM-LEGRAMDKNRCPSEPISSKPL 691 (1135)
Q Consensus 619 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 691 (1135)
+++.+..+..... ......++|+|||++|+++.. ++.|.+||+.++ +.... +....
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~~---------------- 152 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAAG---------------- 152 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGTT----------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCCC----------------
Confidence 9999888864311 124678999999999998864 589999999877 32222 11000
Q ss_pred ccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCccc
Q 001159 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1135)
Q Consensus 692 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~ 771 (1135)
T Consensus 153 -------------------------------------------------------------------------------- 152 (361)
T 2oiz_A 153 -------------------------------------------------------------------------------- 152 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEecCC-cceeEecccceeeeEEeccccCCCCCccccc-ccCeeecCCCCcceeccCCCCCCCCCceEEEEe
Q 001159 772 ASKVVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATAN-VAPQLWQPPSGTLMTNDINESKPTEESAACIAL 849 (1135)
Q Consensus 772 ~~~i~~~~~~s~dg-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~ 849 (1135)
. ..+.+.|++ ..+++.+.||.+.+|++... ++.... ....+|+... ....+.+
T Consensus 153 ---~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~~~~~~~~~~~~~~~~----------------~~~~~~~ 207 (361)
T 2oiz_A 153 ---C-WSVIPQPNRPRSFMTICGDGGLLTINLGED-----GKVASQSRSKQMFSVKD----------------DPIFIAP 207 (361)
T ss_dssp ---E-EEEEECTTSSSEEEEEETTSSEEEEEECTT-----SSEEEEEECCCCSCTTT----------------SCBCSCC
T ss_pred ---c-ceeEEcCCCCeeEEEECCCCcEEEEEECCC-----CcEeeeccccceEcCCC----------------CceEEEe
Confidence 0 122334433 33444555555555554321 110000 0001222211 1123344
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCccE--EEEEeCCC----------CCeEEEEEecCCCcEEEEEeC-----------CC
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPP----------PAATFLAFHPQDNNIIAIGME-----------DS 905 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~~~--~~~~~~h~----------~~v~~l~~sp~~~~~lasg~~-----------dg 905 (1135)
++++..++..+ ++.|.++|+..... ...+.... .....++|+| +++.++++.. ++
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCS
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCc
Confidence 67887777776 78999999875432 22222111 1122378999 6666665543 35
Q ss_pred cEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC--ceeceeeeecCCCCCCCCCCceEEEE
Q 001159 906 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQF 983 (1135)
Q Consensus 906 ~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 983 (1135)
.|.+||+.+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++ +.+.. +. ..| .....++|
T Consensus 287 ~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~--i~-~~G-----~~P~~~~~ 355 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT--IE-GAA-----EASLQVQF 355 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE--ET-TSC-----SSEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE--ec-cCC-----CCcEEEEe
Confidence 89999999999999998877 999999999999998887 99999999998 64322 11 112 34578999
Q ss_pred CCCCc
Q 001159 984 HNDQT 988 (1135)
Q Consensus 984 s~dg~ 988 (1135)
+|||+
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=6.5e-17 Score=185.04 Aligned_cols=317 Identities=13% Similarity=0.044 Sum_probs=195.3
Q ss_pred EeCcCCCceeEecCCCCc-----EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCC
Q 001159 526 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1135)
Q Consensus 526 wd~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~ 600 (1135)
+|..++.....+..+... +..++|+|||++|+..... +++..|++||+.+++......+ .......+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecC-CCCccccceECCCC
Confidence 355555555555544332 5678899999998877532 3456899999998876544333 22123347899999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhcccccccccc
Q 001159 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1135)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 680 (1135)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999998876655553321 5666766665555444443321
Q ss_pred CCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccc
Q 001159 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1135)
Q Consensus 681 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~ 760 (1135)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEEecCCcceeEec-----ccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCC
Q 001159 761 IKALRLPDSIAASKVVVRLIYTNSGLSLLALA-----SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 835 (1135)
Q Consensus 761 ~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1135)
...++|+++.++... .+..|.+|++. ++...... .
T Consensus 146 -----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~~-~ 185 (396)
T 3c5m_A 146 -----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVIH-Q 185 (396)
T ss_dssp -----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEEE-E
T ss_pred -----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEeec-c
Confidence 011234444333321 23344444432 22211110 1
Q ss_pred CCCCCCCceEEEEeec-CCCEEEEEe-C------CeEEEEECCCccEEEEEeCC--CCCeEEEEEecCCCcEEEEEeCC-
Q 001159 836 ESKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED- 904 (1135)
Q Consensus 836 ~~~h~~~~i~~l~~s~-dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~lasg~~d- 904 (1135)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++.. .+..+ ...+..++|+| +++.|+.++.+
T Consensus 186 ---~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 259 (396)
T 3c5m_A 186 ---D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DGSAMAYVSYFK 259 (396)
T ss_dssp ---E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TSSCEEEEEEET
T ss_pred ---C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECC-CCCEEEEEecCC
Confidence 2 56688899999 888777765 2 36999998766543 33323 23588899999 78877776544
Q ss_pred ----CcEEEEEcccceeeEEecCcCCCeEEEEEcC-CCCeEEEEc----------------CCCcEEEEeCCCCceecee
Q 001159 905 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSR 963 (1135)
Q Consensus 905 ----g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~----------------~D~~i~iwd~~~~~~~~~~ 963 (1135)
+.|++||+.+++....... . ... ++|+| ||+++++++ .+..|.+||+.+++..
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~--- 333 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ--- 333 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---
T ss_pred CCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---
Confidence 4599999998865433221 1 133 89999 999888765 3478999999887632
Q ss_pred eeecCCCCC-----CCCCCceEEEECCCCcEEEEEe--cCeEEEEec
Q 001159 964 FIQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDS 1003 (1135)
Q Consensus 964 ~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~--d~~v~vwd~ 1003 (1135)
.+....... .....+..++|+|||++|+.+. ++...||.+
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 122111100 0001245689999999988843 455555544
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=3.4e-14 Score=166.55 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=220.7
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcC--CCchhhhhccccc
Q 001159 598 TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS--DGVRLLRMLEGRA 675 (1135)
Q Consensus 598 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 675 (1135)
+.+..+++...++.|.++|..+++.+.++.... .+..+.|+|||+++++++.++.|.+||+. ++ +....+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~-- 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKI-- 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEEC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEec--
Confidence 334556667789999999999999999887542 35689999999999999999999999985 43 11111100
Q ss_pred cccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCc
Q 001159 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1135)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~ 755 (1135)
T Consensus 239 -------------------------------------------------------------------------------- 238 (567)
T 1qks_A 239 -------------------------------------------------------------------------------- 238 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEeecCCcccccceEEEEEEe----cCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcce
Q 001159 756 SDPSQIKALRLPDSIAASKVVVRLIYT----NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 830 (1135)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~i~~~~~~s----~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1135)
.... ..++|+ |||++++++.. ++.+.++|..+.+. .....+.-.... +.
T Consensus 239 ----------------G~~P-~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~------~~~i~~~~~~~~-~~-- 292 (567)
T 1qks_A 239 ----------------GSEA-RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP------KKIQSTRGMTYD-EQ-- 292 (567)
T ss_dssp ----------------CSEE-EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE------EEEEECCEECTT-TC--
T ss_pred ----------------CCCC-ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE------EEEEeccccccc-cc--
Confidence 0112 788999 69999888876 58898887433111 100000000000 00
Q ss_pred eccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEE-eCCCCCeEEEEEecCCCcEEEEEe-CCCc
Q 001159 831 TNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGM-EDSS 906 (1135)
Q Consensus 831 ~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~-~dg~ 906 (1135)
..|....+..+..++++..+++.- +|+|.++|..+.+.+... .........+.|+| ++++++++. .++.
T Consensus 293 ------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p-dgr~~~va~~~sn~ 365 (567)
T 1qks_A 293 ------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNK 365 (567)
T ss_dssp ------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTE
T ss_pred ------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC-CCCEEEEEeCCCCe
Confidence 002133678899999887666654 699999999876433221 12344577899999 788776655 5789
Q ss_pred EEEEEcccceeeEEecC-----cCCCeEEEEEcCCCC-eEEEEc-CCCcEEEEeCCC-------CceeceeeeecCCCCC
Q 001159 907 VQIYNVRVDEVKTKLKG-----HQNRITGLAFSPTLN-ALVSSG-ADAQLCMWSIDK-------WEKLKSRFIQAPAGRQ 972 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~-----h~~~i~~l~~s~d~~-~l~s~~-~D~~i~iwd~~~-------~~~~~~~~~~~~~~~~ 972 (1135)
|.++|+.+++.+..+.- |.+.-..+ ++|++. .+++.. .+++|.++|..+ ++.+.. +... +
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~--i~~~-g-- 439 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS--FPAL-G-- 439 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE--EECS-C--
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE--EecC-C--
Confidence 99999999988776543 43322222 578754 445543 568999999987 332221 1111 1
Q ss_pred CCCCCceEEEECCCCcEEEEEe--------cCeEEEEec-CC-----c-eeeccC-----CCCCCCCCEEEEEEeeCCCE
Q 001159 973 SPLVGETKVQFHNDQTHLLVVH--------ESQISVYDS-KL-----E-CSRSWS-----PKDALPAPISSAIYSCDGLL 1032 (1135)
Q Consensus 973 ~~~~~v~~~~~s~dg~~l~~~~--------d~~v~vwd~-~~-----~-~~~~~~-----~~~~h~~~i~~~~~s~d~~~ 1032 (1135)
..-..+.++|+++++.+.. .+.|.|+|+ +. . ....+. ....-...+..+.|++||++
T Consensus 440 ---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 516 (567)
T 1qks_A 440 ---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE 516 (567)
T ss_dssp ---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred ---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence 1224688999999999854 469999999 44 1 111111 11111457899999999999
Q ss_pred EEEEe-----CCCeEEEEECCCceeeeeeCC
Q 001159 1033 VYAGF-----CDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1033 l~~~~-----~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
++++. .++.|.|+|..|++++.++..
T Consensus 517 ~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 517 VWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 88763 379999999999999988874
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=1.5e-14 Score=156.75 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=178.6
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC------CCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEc
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDNNIIAIGME-DSSVQIYNV 912 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~~lasg~~-dg~v~iwd~ 912 (1135)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.+++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 56788999999999888776 7999999987 666666642 34578999995326777666543 88999999
Q ss_pred ccceeeEEec-CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEE
Q 001159 913 RVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 991 (1135)
Q Consensus 913 ~~~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 991 (1135)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||... +.... +.. .++. ..+..++++++|++++
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~--~~~-~~~~---~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKHL---EFPNGVVVNDKQEIFI 179 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTTC---SSEEEEEECSSSEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEE--eCC-CCcc---CCcEEEEECCCCCEEE
Confidence 5677666664 3446789999999999888888889999999653 32211 111 1111 3578999999999777
Q ss_pred EE-ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC-eEEEEECCCceeeeeeCCceeccccccCC
Q 001159 992 VV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVSN 1069 (1135)
Q Consensus 992 ~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
+. .++.|++||.+++.+..+.. .++...+..++++++|+++++...++ .|.+|+. +++.+..+..+ ..
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------~~ 249 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------VK 249 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------SC
T ss_pred EECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------CC
Confidence 74 58899999997776665543 22346789999999999888887776 9999996 46666655432 11
Q ss_pred CCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1070 TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1070 ~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
...+.+++++| +|+++++ +.|++|++|++...
T Consensus 250 ~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 250 HAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 23466888988 6777777 67999999998653
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=9.6e-15 Score=163.45 Aligned_cols=263 Identities=8% Similarity=0.108 Sum_probs=179.5
Q ss_pred CCeeEEEEecCCCeEEEEE--------eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC
Q 001159 347 SNVMSMDFHPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp 418 (1135)
..+..+++ ||++++++. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 46778888 888665543 236789999998875421 2 4588999999
Q ss_pred CCCeEEEEeCC---C--eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC------------------
Q 001159 419 DGLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------------------ 475 (1135)
Q Consensus 419 d~~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~------------------ 475 (1135)
||++||.++.+ + .|.+|++.+++... +..+.. +.+++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47778887765332 223334 99999999999 4555542
Q ss_pred ---------CCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCC-------eEEEEeCcCCCceeEecC
Q 001159 476 ---------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 476 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~ 539 (1135)
...|++||+.+++.+..+.. . .+..++|+| +| ++++++.++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999998887455554 4 788899987 44 777776542 44556555 333333433
Q ss_pred CCCcEEEEEEcCCCCEEEEEecCCC----CCCeEEEEECCCCeEEEEeecccCCceeE-EEecCCCCEEEEEeCCCeEEE
Q 001159 540 PGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 540 ~~~~i~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~~~~~dg~i~i 614 (1135)
+ ..+..+ +|||++|+.++.... ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 444444 999999987764221 245788998 5655443334333 6775 8999 88 8888999999999
Q ss_pred EECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE-EEEEcC
Q 001159 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 662 (1135)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~iwd~~ 662 (1135)
| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 23688999999 677777777665 777765
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.2e-14 Score=160.79 Aligned_cols=251 Identities=12% Similarity=0.069 Sum_probs=183.7
Q ss_pred CCceEEEEeecCCCEEEEEe-C------------------------CeEEEEECCCccEEEEEe-CCCCCeEEEEEecCC
Q 001159 841 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 894 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-d------------------------g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~sp~~ 894 (1135)
-..+.+++++|+|+++++.. + ++|.+||..+++.+..+. ++-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 56789999999999998887 4 379999999999877765 3446789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce-eeEEe---------cCcCCCeEEEEEcC-CCCeEEEEc-CCCcEEEEeCCCCceece
Q 001159 895 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 962 (1135)
Q Consensus 895 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iwd~~~~~~~~~ 962 (1135)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+. .++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 8888888889999999986542 45555 34555789999999 788888886 6999999994 4443222
Q ss_pred eeeecCCC--CCCCCCCceEEEECCC-CcEEEE-EecCeEEEEecC-CceeeccCCCCCCCCCEEEEEEee------CCC
Q 001159 963 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1031 (1135)
Q Consensus 963 ~~~~~~~~--~~~~~~~v~~~~~s~d-g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~~~~s~------d~~ 1031 (1135)
........ ..........++++|+ +.++++ ..++.|++|+.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11110000 0001134689999999 555555 368899999994 887776643 23467888999999 444
Q ss_pred EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1032 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.+++...+..|++|+..+++.+..+.... .+...+..++++| +|+++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 33334445689999999999998775211 1224577899999 678999999999999999864
No 175
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=1.3e-10 Score=144.96 Aligned_cols=583 Identities=11% Similarity=0.077 Sum_probs=339.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|+++.-.++|. |. .|+.+| +..||-.. |+.+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGYA--------FTVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSSC--------EEEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCCc--------eEEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33 466666 55566322 112211000 00 001245799999999987654
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccC----CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCC-CCC-
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 499 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 499 (1135)
|+.+| +..||..+++. . .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ...
T Consensus 104 gT~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 89999876532 1 2221111 188898888886 444 333 45899998776543221111 112
Q ss_pred eeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
|.++...+. ..+..++.++.+..||..+.+..... ......|.++...+++...+... .+-|.+||..+++
T Consensus 175 i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQG---DQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEET---TEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCC---CCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 777776543 24555776666888987765543221 12345788888888877665432 2238999988776
Q ss_pred EEEEeecc------cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCcceEEEcCCCCEE
Q 001159 579 IKRTYSGF------RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~~~------~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l 647 (1135)
........ ....|.++...++|...+ |+.+ -|.+|+..+++........ -....|.++...++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 54332211 123689999988887554 4455 4888998876544332111 11246889999988865
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
-.|+.++.|..|+..+. . +..+.....
T Consensus 324 Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp EEEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred EEEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 45777778888876433 1 111100000
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccC
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 807 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~ 807 (1135)
........| .++...++|. |-+++.++-+..|+...
T Consensus 351 ---------------------------------------~~~l~~~~V-~~i~~d~~g~-lWiGt~~~Gl~~~~~~~--- 386 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVV-SCIVEDKDKN-LWIGTNDGGLNLYNPIT--- 386 (795)
T ss_dssp ---------------------------------------SSSCSCSSE-EEEEECTTSC-EEEEESSSCEEEECTTT---
T ss_pred ---------------------------------------CCCCCCCee-EEEEECCCCC-EEEEECCCCeEEEcCCC---
Confidence 000012334 7888888887 55666665676665332
Q ss_pred CCCCcccccccCeeecCCCCcceeccCCC-----CCCCCCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEe--
Q 001159 808 NPSGKATANVAPQLWQPPSGTLMTNDINE-----SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM-- 879 (1135)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~-- 879 (1135)
+......... .-. ...|.+++..++|+.|-+|. ++.|.+||..+++......
T Consensus 387 -------------------~~~~~~~~~~~~~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 387 -------------------QRFTSYTLQEDESARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp -------------------CCEEEECCC------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred -------------------CcEEEEecCCCCcccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence 1111100000 001 46799999999999444555 6789999998876543321
Q ss_pred --CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec------CcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 880 --SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 880 --~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.+...|.++...+ ++.+.+ |+.+ -+.+||..+++...... .....|.++...++|.+.+... + -+..
T Consensus 447 ~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~ 521 (795)
T 4a2l_A 447 SQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSV 521 (795)
T ss_dssp SCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEE
T ss_pred CCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEE
Confidence 1345799999988 666554 4454 58899988776433221 1235799999999998777665 4 4888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCC-CCCEEEEEEeeCC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDG 1030 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~d~ 1030 (1135)
|+..+++. . ..............|.++...++|.+.+.+.+ .+..||........+....+. ...|.++..+++|
T Consensus 522 ~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g 597 (795)
T 4a2l_A 522 FKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFG 597 (795)
T ss_dssp EEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTS
T ss_pred EeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCC
Confidence 98876542 1 11000000011146788999999998777655 788899854444443322222 3468899999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1031 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1031 ~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.+.+++ ++.|..|+..+++.. .+....-++ ......-++...+ +|+ |..|+.+| +..++...
T Consensus 598 ~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 598 RLWLST--NRGISCFNPETEKFR-NFTESDGLQ----SNQFNTASYCRTS-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp CEEEEE--TTEEEEEETTTTEEE-EECGGGTCS----CSCEEEEEEEECT-TSC-EEEEETTE-EEEECGGG
T ss_pred CEEEEc--CCceEEEcCCCCcEE-EcCCcCCCc----cccCccCceeECC-CCe-EEEecCCc-eEEEcHHH
Confidence 865544 456888999877643 333221111 1112122445555 564 55556666 55666543
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=7e-15 Score=180.57 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=175.1
Q ss_pred hhccCCCcceEEEEEcCCCCeEEEE--eCCCeEEEEEeCCCCceeeeeEeecccCCEE---------EEEEe--cCCCeE
Q 001159 402 ALLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQL 468 (1135)
Q Consensus 402 ~~~~~h~~~V~~v~~spd~~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~v~~s--~d~~~~ 468 (1135)
..+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~-- 91 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG-- 91 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--
Confidence 3466789999999999887777777 558899999975554433 4556666666 66676 9998
Q ss_pred E-EEEEc-CCCcEEEEEcC--CCeeeeeecC-----CCCCeeEEEeeccCCccEEEEEEcC----------CeEEEEeCc
Q 001159 469 C-IVTCG-DDKMIKVWDVV--AGRKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYD 529 (1135)
Q Consensus 469 ~-l~s~~-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~l~s~s~d----------g~i~iwd~~ 529 (1135)
. |+..+ .+..|.+|++. .......+.. |...+.+++|+|++ +.|++++.+ ..|++||+.
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECC
Confidence 4 55444 35667777765 2034455655 66788899998865 888888877 589999998
Q ss_pred CC-----CceeEec-CCCCcEEEEEEcCCCCEEEEEecCCC----CCCeEEEEECC-CC---eEEEEeecccCCceeEEE
Q 001159 530 YL-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EG---AIKRTYSGFRKRSLGVVQ 595 (1135)
Q Consensus 530 ~~-----~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~i~ 595 (1135)
+. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+.
T Consensus 170 ~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp STTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 72 3344555 55667888999999999998765321 13579999999 57 34333333333 788999
Q ss_pred ecCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCC------CCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 596 FDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 596 ~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
|+|||+.+++++.++ .|++||+.+++.......+... ..+..++|+++++++++++. +.++||.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777788 6777777677654433322111 01456788888888888877 88888743
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=2.4e-13 Score=159.30 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=143.9
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc--CCCceeEecCCCCcEEE
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTM 546 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~i~~ 546 (1135)
++++...+++|.++|..+++.+.++... ..+..+.++|++ +++++++.|+.|.+||+. +.+....+.. +.....
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDG--r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ 244 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARS 244 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS--CEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCC--CEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCce
Confidence 7888899999999999999999888643 356688898854 899999999999999995 6666655554 345679
Q ss_pred EEEc----CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc----------cCCceeEEEecCCCCEEEE-EeCCCe
Q 001159 547 MAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFLA-AGDEFQ 611 (1135)
Q Consensus 547 ~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~i~~s~~~~~l~~-~~~dg~ 611 (1135)
++|+ |||++++++.. ..+.|.++|..+.+.+..+... ....+..+..++++..++. ...+|.
T Consensus 245 ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred eEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 9999 69999998764 3688999999999998877632 1225677888888765554 567799
Q ss_pred EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEEcCCC
Q 001159 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 664 (1135)
|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|..++
T Consensus 322 v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99999987654333222111 2467889999999987766 4788999998776
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=1.4e-10 Score=144.83 Aligned_cols=535 Identities=9% Similarity=0.039 Sum_probs=319.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.++...++|. +.+ |+.+ .+..||..+++...- ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~-lWi-gT~~-Gl~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWI-GTRD-GLSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EEE-EESS-CEEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EEE-EeCC-chheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 443 4544 588999876543210 000 0000011888988888876654
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecc-cCC-EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee-cCCCCCeeE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYS 502 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 502 (1135)
. . +.+..||..+++... . ..++ ... |.++...+++. +. .++.++-|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EE-EEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 458899987643211 0 0011 123 88888888886 33 3555556899998777644321 123456888
Q ss_pred EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-------CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 503 i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
+..... ..+..++.++-+.+||..+.+...... .....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 876543 345566665558889877654332211 1235799999999888666442 2 48999988
Q ss_pred CCeEEEEeec------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCcceEEEcCCC
Q 001159 576 EGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEG 644 (1135)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 644 (1135)
++........ .....|.++..+++|. |..|+.++-|..|+..+.... .+... -....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7765443221 1223689999998876 555666677888887654432 22211 012358888888888
Q ss_pred CEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccc
Q 001159 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1135)
Q Consensus 645 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1135)
.+. .|+.++.|..|+..++. . ..+......
T Consensus 369 ~lW-iGt~~~Gl~~~~~~~~~-~-~~~~~~~~~----------------------------------------------- 398 (795)
T 4a2l_A 369 NLW-IGTNDGGLNLYNPITQR-F-TSYTLQEDE----------------------------------------------- 398 (795)
T ss_dssp CEE-EEESSSCEEEECTTTCC-E-EEECCC--------------------------------------------------
T ss_pred CEE-EEECCCCeEEEcCCCCc-E-EEEecCCCC-----------------------------------------------
Confidence 654 57777788888876541 1 000000000
Q ss_pred cccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecc
Q 001159 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQR 804 (1135)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~ 804 (1135)
.. . ......| .++...++|..|.+++.++-+.+|+...
T Consensus 399 ---------------------------------~~----~----~l~~~~v-~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 399 ---------------------------------SA----R----GIGSNNI-KAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp --------------------------------------------CCSCSCE-EEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred ---------------------------------cc----c----CCCCccE-EEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 00 0 0012334 7888888887455666655577775432
Q ss_pred ccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeC----
Q 001159 805 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS---- 880 (1135)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---- 880 (1135)
... ..+..... . -+ ...|.++...++|++.+... +.|.+||..+++.......
T Consensus 437 ~~~------------~~~~~~~~--------~-l~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 437 GQV------------ENFNQRNS--------Q-LV-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp CCE------------EEECTTTS--------C-CS-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CcE------------EEeecCCC--------C-cC-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccc
Confidence 111 00000000 0 02 56799999999998776655 5689999887655332211
Q ss_pred --CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-------CcCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 881 --PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 881 --h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
+...|.++...+ ++.+.+ |+. +-|..||..+++. .+. .....|.++...++|.+.++.. . -+..
T Consensus 494 ~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~ 566 (795)
T 4a2l_A 494 PVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYC 566 (795)
T ss_dssp BCCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEE
T ss_pred ccCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-Ccee
Confidence 235789999988 666554 444 4588999887765 222 2345799999999998777654 3 4888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCC-CCE--EEEEEee
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSC 1028 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~i--~~~~~s~ 1028 (1135)
||..+++.. ......+.. ...|.++...++|.+.+++ ++.+..|+.....+..+...++.. ..+ .++...+
T Consensus 567 ~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~ 640 (795)
T 4a2l_A 567 FNEKDKQIK---RYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTS 640 (795)
T ss_dssp EETTTTEEE---EECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECT
T ss_pred ECCCCCcEE---EeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECC
Confidence 998775422 122222221 1457889999999887776 466888888555555544333222 233 5677788
Q ss_pred CCCEEEEEeCCCeEEEEECC
Q 001159 1029 DGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1029 d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|++++ |+.+| +..++.+
T Consensus 641 ~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 641 VGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp TSCEEE-EETTE-EEEECGG
T ss_pred CCeEEE-ecCCc-eEEEcHH
Confidence 888555 55666 4455544
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=7.2e-15 Score=180.44 Aligned_cols=285 Identities=9% Similarity=-0.012 Sum_probs=188.1
Q ss_pred CCCCeeEEEEecCCCeEEEEE--eccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE---------E
Q 001159 345 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 413 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~ 413 (1135)
|...|..++|++++- +++++ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 566899999998864 55555 5578899999644332221 233444444 4
Q ss_pred EEEc--CCCCe-EEEEeC-CCeEEEEEeC--C-CCceeeeeEeec-----ccCCEEEEEEecCCCeEEEEEEcCC-----
Q 001159 414 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 476 (1135)
Q Consensus 414 v~~s--pd~~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~v~~s~d~~~~~l~s~~~d----- 476 (1135)
+.|+ |||+. |+.++. +..|.+|++. + +. .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5555 99999 877654 4566666665 2 33 22 3444 667889999999999 67777766
Q ss_pred -----CcEEEEEcCC------Ceeeeeec-CCCCCeeEEEeeccCCccEEEEEEcC--------CeEEEEeCc-CC---C
Q 001159 477 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 532 (1135)
Q Consensus 477 -----~~i~iwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~iwd~~-~~---~ 532 (1135)
..|++||+.+ ++ ...+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999887 54 44555 666778888998854 888877755 479999998 45 2
Q ss_pred ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC-------ceeEEEecCCCCEEEE
Q 001159 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 605 (1135)
Q Consensus 533 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~i~~s~~~~~l~~ 605 (1135)
.......+...+..++|+|||++++++.. ++...|++||..+++.......+... .+..++|++++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444678999999999995555532 33347888888777765444433221 1467889999999999
Q ss_pred EeCCCeEEEE--ECCCCceEEEEeCCCCCCCcceE-EEcCCCCEEEEEECCCc--EEEEEcCCC
Q 001159 606 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDNG--IKILANSDG 664 (1135)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~--i~iwd~~~~ 664 (1135)
++. +.+++| |+.+++ +..+..+. ..+..+ +++.+.-++++++.+.. |.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 555555 56665543 245555 44443334444555544 444565555
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=2.7e-14 Score=157.89 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=182.2
Q ss_pred CCeeEEEEecCCCeEEEEEecc------------------------ceEEEEEcCCccccccCCceeecccccccchhhh
Q 001159 347 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1135)
+.|.+++++|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4799999999997 67777666 4799999887765431
Q ss_pred hccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC-ceeeeeEe---------ecccCCEEEEEEec-CCCeEEEE
Q 001159 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 471 (1135)
Q Consensus 403 ~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~v~~s~-d~~~~~l~ 471 (1135)
...++-.....++++|+|+++++...++.|++||..... .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012345578999999999988888889999999986542 222 23 23445789999999 676 677
Q ss_pred EEc-CCCcEEEEEcCCCeeeeeecC----------CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--
Q 001159 472 TCG-DDKMIKVWDVVAGRKQYTFEG----------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1135)
Q Consensus 472 s~~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 538 (1135)
+.+ .++.|++|| .+++.+..+.. +-.....++++|+. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 67777777642 22348899998762 3778888889999999998777766663
Q ss_pred CCCCcEEEEEEcCCCCEEEEEec---CCCCCCeEEEEECCCCeEEEEee---cccCCceeEEEecCCCCEEEEEeCCCeE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~i~~s~~~~~l~~~~~dg~i 612 (1135)
.+...+.+++++| +..+.+.+. ....+..|++||..+++.+..+. ++.. ....++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 433333321 11235589999999999998874 3333 68899999999777788889999
Q ss_pred EEEECCC
Q 001159 613 KFWDMDN 619 (1135)
Q Consensus 613 ~iwd~~~ 619 (1135)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999763
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.5e-13 Score=148.78 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=179.0
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEe---ecccCCEEEEEEe-cCCCeEEEEEEc-CCCcEE
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCG-DDKMIK 480 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l---~~h~~~v~~v~~s-~d~~~~~l~s~~-~d~~i~ 480 (1135)
++-..+.+++++|+|+++++...++.|.+||.. ++.+...... .+|...+.++++. +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 456679999999999988888889999999987 4433311110 1344578999995 5665 555553 388999
Q ss_pred EEEcCCCeeeeeecC-CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCCCEEE
Q 001159 481 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 481 iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~ 557 (1135)
+|| .+++.+..+.. +...+.++++++++ .++++...++.|.+||.+ ++....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67777776643 44578899997754 777777788999999964 33343443 3345789999999998666
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeeccc-CCceeEEEecCCCCEEEEEeCCC-eEEEEECCCCceEEEEeCCCCCCCc
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 635 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1135)
+... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 6543 678999997 466666665432 12678899999998888887775 9999996 46677777655443346
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 636 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987776 67999999997543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.4e-13 Score=169.69 Aligned_cols=249 Identities=9% Similarity=0.011 Sum_probs=177.2
Q ss_pred cCCCcceEEEEEcCCCCeEEEEeCCC-----eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc-
Q 001159 405 NDAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~~~dg-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~- 478 (1135)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 34666799999999999999876543 899999999865432 222 22367899999999 6676666655
Q ss_pred ---------------EEEEEcCCCee----eeeecCCCCCeeEEEeeccCCccEEEEEEc-----CCeEEEEeCcC----
Q 001159 479 ---------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY---- 530 (1135)
Q Consensus 479 ---------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~iwd~~~---- 530 (1135)
|++|++.++.. +.....|...+..+.|+|++ ++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988763 22333355667888998755 77777664 56899999986
Q ss_pred --CC-ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--EEEeecccC-CceeEEEecCCCCEEE
Q 001159 531 --LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 531 --~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~i~~s~~~~~l~ 604 (1135)
+. ....+..+...+.. .|+++|+.|+..+........|.+||+.++.. .+.+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 34455555554444 48899999887764333366899999987742 344444433 3677889987777777
Q ss_pred EEeCCCe--EEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEEcCCC
Q 001159 605 AAGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1135)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 664 (1135)
+...++. |++|++.+++.+..+..+ ...+..+.++|++..++... ..+++..||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 7888874 666787778877777765 33678889999987666442 2478999999877
No 183
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.9e-09 Score=134.18 Aligned_cols=595 Identities=12% Similarity=0.091 Sum_probs=336.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|+++.-.++|. |- .|+.+| +..||-.+ |+.+....... ....-....|.++.-.++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~~~----~~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LW-FATEEG-LNKFDGTR--------FITYYKEEQSS----SVQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC-EE-EEESSC-EEEECSSS--------EEEECCCSSCS----SSCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC-EE-EccCCc-CccccCCc--------eEEEEcCCCCC----ccccccccccceEEEcCCCCEEEE
Confidence 35799999999996 33 356565 56667332 11121100000 000012346999999988884666
Q ss_pred EeCCCeEEEEEeCCCCceeeeeE-eec---ccCCEEEEEEec--CCCeEEEEEEcCCCcEEEEEcCCCeeeeeec-----
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLE-IDA---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE----- 494 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~-l~~---h~~~v~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 494 (1135)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++-|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999887532210000 000 123588888877 664 4445545568899987766433211
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCCCCC
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~ 567 (1135)
.....|.++..... ..|..++.++-+..||..+.+..... ......|.++...+++...+... .
T Consensus 160 l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 11345777776443 35666777766888987665432211 11235789999988888766541 3
Q ss_pred eEEEEECCCCeEEEEeec------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe-------CC-----
Q 001159 568 HLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD----- 629 (1135)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 629 (1135)
-+.+||..+++....... .....|.++...++|. |..|+..+-|.+++..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 489999887765432211 1223688898888775 5556664568889987765332211 00
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCC
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 709 (1135)
-....|.++...++|. |-.|+.++.|..++..+.. +..+......
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~-------------------------------- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSYSPTQ-------------------------------- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC----C--------------------------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeeccCccc--------------------------------
Confidence 1123678888888886 4456767778888765441 1111000000
Q ss_pred CCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCccee
Q 001159 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLL 789 (1135)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~ 789 (1135)
..........| .++...++|. |.
T Consensus 355 -------------------------------------------------------~~~~~l~~~~v-~~i~~d~~g~-lW 377 (781)
T 3v9f_A 355 -------------------------------------------------------MNESSLSNKVV-SSVCDDGQGK-LW 377 (781)
T ss_dssp -------------------------------------------------------CCSSCCSSSCE-EEEEECTTSC-EE
T ss_pred -------------------------------------------------------cccCCCCCcce-EEEEEcCCCC-EE
Confidence 00000012334 7888888887 55
Q ss_pred EecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEEC
Q 001159 790 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 869 (1135)
Q Consensus 790 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~ 869 (1135)
+++.++-+..|+...... ..+... .. .. ...|.+++..++|.+.+...++.|..+|.
T Consensus 378 igt~~~Gl~~~~~~~~~~------------~~~~~~--------~~--~~-~~~v~~i~~d~~g~lWigt~~~Gl~~~~~ 434 (781)
T 3v9f_A 378 IGTDGGGINVFENGKRVA------------IYNKEN--------RE--LL-SNSVLCSLKDSEGNLWFGTYLGNISYYNT 434 (781)
T ss_dssp EEEBSSCEEEEETTEEEE------------ECC---------------CC-CSBEEEEEECTTSCEEEEETTEEEEEECS
T ss_pred EEeCCCcEEEEECCCCeE------------EEccCC--------CC--CC-CcceEEEEECCCCCEEEEeccCCEEEEcC
Confidence 666555566665432111 000000 00 02 57799999998888777444677999998
Q ss_pred CCccEEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc-----CCCeEEEEEcCCCCeEEE
Q 001159 870 MTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLNALVS 942 (1135)
Q Consensus 870 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~i~~l~~s~d~~~l~s 942 (1135)
.+++...... .....|.++...+ ++.+. .|+. +-|..||..+++........ ...|.+++..++|.+.+.
T Consensus 435 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 435 RLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp SSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred CCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 8765433221 1346799999887 66544 4555 45889998876543322212 467999999999987776
Q ss_pred EcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCC-CCCE
Q 001159 943 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPI 1021 (1135)
Q Consensus 943 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i 1021 (1135)
...+| +..||..+++.. ......+. ....|.++...++|.+.+.+.+|-|..||........+....+. ...|
T Consensus 512 t~~~G-l~~~~~~~~~~~---~~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i 585 (781)
T 3v9f_A 512 TFGGG-VGIYTPDMQLVR---KFNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHI 585 (781)
T ss_dssp ESSSC-EEEECTTCCEEE---EECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCC
T ss_pred EcCCC-EEEEeCCCCeEE---EccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceE
Confidence 54455 778888765421 11111111 12568899999999988877655448888844333333222211 3467
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1022 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1022 ~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
.++..+++|.+.+ ++.+| |..|+..+++.. .+....-++ ......-++...+ +|. |..|+.+| +..++..
T Consensus 586 ~~i~~d~~g~lW~-~t~~G-l~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 586 RAISEDKNGNIWA-STNTG-ISCYITSKKCFY-TYDHSNNIP----QGSFISGCVTKDH-NGL-IYFGSING-LCFFNPD 655 (781)
T ss_dssp CEEEECSSSCEEE-ECSSC-EEEEETTTTEEE-EECGGGTCC----SSCEEEEEEEECT-TSC-EEEEETTE-EEEECSC
T ss_pred EEEEECCCCCEEE-EcCCc-eEEEECCCCceE-EecccCCcc----ccccccCceEECC-CCE-EEEECCCc-eEEEChh
Confidence 8899888888555 44555 788898876543 332211111 1111222444555 564 55566777 5666765
Q ss_pred C
Q 001159 1102 D 1102 (1135)
Q Consensus 1102 ~ 1102 (1135)
.
T Consensus 656 ~ 656 (781)
T 3v9f_A 656 I 656 (781)
T ss_dssp C
T ss_pred h
Confidence 4
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=2.2e-13 Score=151.31 Aligned_cols=273 Identities=11% Similarity=0.053 Sum_probs=187.6
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..|.++.|+|++. .++..+.++.++.|. ++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 3678889999887 455556788888883 222211 34466678999999999988888
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCeeeeeec--CCCCCe
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 500 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~h~~~v 500 (1135)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998865432 2224667899999999998 67776666 689999988776543332 244578
Q ss_pred eEEEeeccCCccEEEEEEc------CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 501 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.+++++|++ .++++... .+.|..||....+.. .+......+..++|+|+++.|+.+.. .++.|.+||.
T Consensus 138 ~~i~~d~~g--~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCCC--CEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 899998754 66666543 355666665543332 22222335788999999997766542 2678999998
Q ss_pred CC-CeEEEEe------ecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC----CCCcceEEEcCC
Q 001159 575 SE-GAIKRTY------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKE 643 (1135)
Q Consensus 575 ~~-~~~~~~~------~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 643 (1135)
.+ +..+..+ .......+..++++++|+.+++...++.|.+||. +++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3332211 1111125778999999998888778899999998 4666777654321 114789999999
Q ss_pred CCEEEEEECCC
Q 001159 644 GSLLAVTTSDN 654 (1135)
Q Consensus 644 ~~~l~~~~~dg 654 (1135)
+..|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666553
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=3.5e-13 Score=149.64 Aligned_cols=270 Identities=13% Similarity=0.075 Sum_probs=181.9
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
.+++|++++..++....++.++.|.-. .... +.. + ...+.+++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g~l~ 59 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQGQLF 59 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTSCEE
T ss_pred ceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCCCEE
Confidence 677888888888777778888877211 0000 111 2 4567899999999977
Q ss_pred EEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccceeeEEec--CcCCCeE
Q 001159 857 MSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQNRIT 929 (1135)
Q Consensus 857 a~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~~~~l~--~h~~~i~ 929 (1135)
+++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+...+.
T Consensus 60 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 7776 78999999998887665545677899999999 78888777666 689999998876543333 3456799
Q ss_pred EEEEcCCCCeEEEEcC------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEE
Q 001159 930 GLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVY 1001 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vw 1001 (1135)
+++++|+|+++++... .+.|..++.++++... ..... ..+..++|+|||++|+++ .++.|.+|
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~~~ 209 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLHRI 209 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEEEE
Confidence 9999999998887764 2456666655544221 11111 245789999999876664 46899999
Q ss_pred ec--CCceeecc-----CCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccE
Q 001159 1002 DS--KLECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPL 1074 (1135)
Q Consensus 1002 d~--~~~~~~~~-----~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1135)
|. .+..+..+ ....+ ...+..++++++|+++++...++.|.+||. +++.+..+.... ....+...+.
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~----~~~g~~~~~~ 283 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG----RDEGHMLRST 283 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT----GGGTCSCBCC
T ss_pred EecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC----CccccccCcc
Confidence 98 33332211 11111 136788999999998887778899999998 466666554221 0001112455
Q ss_pred EEEecCCCCCEEEEEecC
Q 001159 1075 VIAPHPSEPNQIALGMSD 1092 (1135)
Q Consensus 1075 ~~~~~~~~~~~l~sg~~d 1092 (1135)
+++|+| |+..|+.++.+
T Consensus 284 ~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 284 HPQFIP-GTNQLIICSND 300 (333)
T ss_dssp EEEECT-TSCEEEEEEEC
T ss_pred eEEECC-CCCEEEEEeCc
Confidence 788887 56566555554
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=2.5e-13 Score=151.93 Aligned_cols=220 Identities=10% Similarity=0.093 Sum_probs=151.7
Q ss_pred ceEEEEeecCCCEEEEEe-C---Ce--EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC------------
Q 001159 843 SAACIALSKNDSYVMSAS-G---GK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED------------ 904 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-d---g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d------------ 904 (1135)
.+..++|||||++||..+ + +. |.+||+.+++.......+. +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 356889999999999886 2 33 8888998887665554333 99999999 88888877642
Q ss_pred ---------------CcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC-------cEEEEeCCCCceece
Q 001159 905 ---------------SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKS 962 (1135)
Q Consensus 905 ---------------g~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-------~i~iwd~~~~~~~~~ 962 (1135)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++. .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-E- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-E-
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-E-
Confidence 5799999998887455554 3 78999999999 887776542 445555554332 1
Q ss_pred eeeecCCCCCCCCCCceEEEECCCCcEEEE-Eec--------CeEEEEecCCceeeccCCCCCCCCCEEE-EEEeeCCCE
Q 001159 963 RFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHE--------SQISVYDSKLECSRSWSPKDALPAPISS-AIYSCDGLL 1032 (1135)
Q Consensus 963 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~-~~~s~d~~~ 1032 (1135)
.+... + .+. .++|||++|+. +.+ ..|.+|| +++..... ..|...+.. ++|+ |+ +
T Consensus 212 -~l~~~-~------~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~---~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMFEK-V------SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGIL---DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEEEE-E------SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESS---TTCCSEEEEEEEET-TE-E
T ss_pred -EeccC-c------cee--eECCCCCEEEEEEccccCCccccceEEEEC-CCceEecc---ccCCcccCCccEEc-Cc-E
Confidence 11111 1 123 33999998887 432 3688888 55443322 233567886 9999 98 8
Q ss_pred EEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcE-EEEecC
Q 001159 1033 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAV-HVVEPS 1101 (1135)
Q Consensus 1033 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v-~~W~~~ 1101 (1135)
+++++.++.+++| +.+++....+.. ...+.++.++| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~~-----------~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAKG-----------RHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEECS-----------SSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEecC-----------CCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 886655332221 13345677877 588888887765 777775
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=2.6e-13 Score=167.31 Aligned_cols=247 Identities=8% Similarity=-0.021 Sum_probs=172.1
Q ss_pred CCeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
..+..++|||||++++++.+.+| .|++||+.+++.+.. ......+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--------------------~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--------------------VLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--------------------EEEEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--------------------cccCcccceEEEEeCCCE
Confidence 36889999999996555444344 899999999876531 001223678999999999
Q ss_pred EEEEeCCCe----------------EEEEEeCCCCcee-eeeEeecccCCEEEEEEecCCCeEEEEEEcC-----CCcEE
Q 001159 423 LGVAFSKHI----------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIK 480 (1135)
Q Consensus 423 las~~~dg~----------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d~~i~ 480 (1135)
|+.++.++. |++|++.++.... .......|...+..+.|+|||+. |+.++. +..|+
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLW 262 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEE
Confidence 999988765 9999998865321 11122235566889999999995 444432 67899
Q ss_pred EEEcCC------Ce-eeeeecCCCCCeeEEEeeccCCccEEEEEEc----CCeEEEEeCcCCCc--eeEecCCCC--cEE
Q 001159 481 VWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLGS--RVDYDAPGN--WCT 545 (1135)
Q Consensus 481 iwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~--~~~~~~~~~--~i~ 545 (1135)
+||+.+ +. ....+..+...+.. .|++++ ..|+..+. ++.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 45666667666655 366654 55555443 33699999987652 234444433 688
Q ss_pred EEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCc
Q 001159 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN 621 (1135)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 621 (1135)
.++|++++.++++... ++...|++||+.+|+.++.+..+.. .+..+.++|+++.++... ..++|+.||+.+++
T Consensus 340 ~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8999876666666653 3345688899878888788877744 788899999987766432 45789999998877
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=9.8e-14 Score=170.51 Aligned_cols=248 Identities=11% Similarity=-0.031 Sum_probs=168.5
Q ss_pred cCCCcceEEEEEcCCCCeEEEE-----eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc-
Q 001159 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~~las~-----~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~- 478 (1135)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+... .+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4577789999999999999954 34568999999998754110 11111 126799999999 6777777766
Q ss_pred ------------EEEEEcCCCe----eeeeecCCCCCeeEEEeeccCCccEEEEEEcCC----eEEEEeCcCCCceeEec
Q 001159 479 ------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 ------------i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~ 538 (1135)
|++|++.++. .+.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 9999998876 333444566678899998865 7777776665 66666654443 33444
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE---EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
.+...+....+ ++|. ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 44445555556 6677 555443222478999999987753 333333324367888888 66777888889988888
Q ss_pred ECC-CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC----CCcEEEEEcCCC
Q 001159 616 DMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1135)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 664 (1135)
.+. +++....+..+. ...+..++++|+++.++.... .++|.+||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 665 355566665432 235778889999987774433 478999999877
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=2.9e-13 Score=144.27 Aligned_cols=252 Identities=12% Similarity=0.046 Sum_probs=187.3
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-CCe
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 928 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~i 928 (1135)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456778777 8999999999999999998776 5789999999 888888 45788999999 899999988653 478
Q ss_pred EEEEEcCCCCeEEEEcC-CCcEEEEeCCCCceeceeeeecC-CCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCC
Q 001159 929 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1005 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~ 1005 (1135)
.++.+.+||+++++.+. ++.|..+|. +++.+....+... .++. .....+++.++|+++++. .++.|.+||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777877876 4554433322211 1111 234567889999999985 689999999988
Q ss_pred ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCE
Q 001159 1006 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1006 ~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1135)
+.+..+... ..+.++.+.++|.++++++.++.|..+|..+|+.+-++..... +. .....+..+...+ +|++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~---~~l~~~~~~~~~~-~G~i 226 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EG---VQLFFVAQLFPLQ-NGGL 226 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BS---CCCSEEEEEEECT-TSCE
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CC---ccccccccceEcC-CCCE
Confidence 887776542 3455678889999999998888999999999999988763211 00 0123455677777 7788
Q ss_pred EEEEecC--------CcEEEEec-CCCccccCCCCCCCCCCCCC
Q 001159 1086 IALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLPS 1120 (1135)
Q Consensus 1086 l~sg~~d--------g~v~~W~~-~~~~~~~~~~~~~~~~~~~~ 1120 (1135)
+++.... +..+++++ .+++..|+.....+-|.+.+
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 8876421 23456666 57888888877777766654
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=6.7e-13 Score=146.31 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=172.0
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
......+++. ++++.++.. ++.|.+||..+++.+.++. .......+++++ ++++.++...++.|.+||..+++...
T Consensus 43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEE
Confidence 3456677774 344444444 7999999999999999886 456789999998 67655554489999999999999877
Q ss_pred EecCcC-----CCeEEEEEcCCCCeEEEEc-CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 920 KLKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 920 ~l~~h~-----~~i~~l~~s~d~~~l~s~~-~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.+.... .....|++ .+++++++.. .++.|.+||..+++....... + .....++++|+|++++++
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g-----~~p~~i~~~~dG~l~v~~ 189 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G-----IQPTSLVMDKYNKMWTIT 189 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S-----SCBCCCEECTTSEEEEEB
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C-----CCccceEEcCCCCEEEEE
Confidence 766433 14667888 4555555544 488999999999875443221 1 234688999999988775
Q ss_pred e-c----------CeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee
Q 001159 994 H-E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1061 (1135)
Q Consensus 994 ~-d----------~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~ 1061 (1135)
. + +.|.++|. +++....+.... ......++|+||+++|+++.. .|.+||..+++......
T Consensus 190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~---- 261 (328)
T 3dsm_A 190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF---- 261 (328)
T ss_dssp CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----
T ss_pred CCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----
Confidence 3 3 68999999 565554543321 236789999999999988765 89999999987642110
Q ss_pred ccccccCCCCccEEEEecCCCCCEEEEE----ecCCcEEEEecCCCcccc
Q 001159 1062 IPTYAVSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg----~~dg~v~~W~~~~~~~~~ 1107 (1135)
.+. ....+.+++++|.+++++++. ..++.|.+|+.. ++..+
T Consensus 262 ~~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 262 LEF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp BCC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred ecC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 110 124577899999777888887 778999999997 76444
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=5.3e-13 Score=145.24 Aligned_cols=240 Identities=7% Similarity=-0.021 Sum_probs=171.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+.....+++|+|+|+.+++++..++.|..|+..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 45578899999999878888999999999999876 221 234567799999999999888
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecc-cCCEEEEEEecCCCeEEEEEE----c-------------CCCcEEEEEcCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTC----G-------------DDKMIKVWDVVA 486 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~----~-------------~d~~i~iwd~~~ 486 (1135)
+...++.|.+||..+++.........+. ...+.+++++|+|+ ++++. + ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 8777889999999777543211111111 23467899999998 67763 2 12355555544
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc-CCCc---eeEecCCCCcEEEEEEcCCCCEEEEEecC
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
++ +..+..+......++|+|++ +.+++.+.++.|.+||+. .+.. ...+..+...+.+++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 44455566778899998865 667777888999999987 3332 22333344466789999999866665
Q ss_pred CCCCCeEEEEECCCCeEEEEeecccCCceeEEEe-cCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.++ +..++..+.+
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 4569999986 788888877654 788899 58999999888764 5556666544
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1e-12 Score=144.79 Aligned_cols=276 Identities=12% Similarity=0.032 Sum_probs=189.8
Q ss_pred ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeee
Q 001159 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446 (1135)
Q Consensus 367 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~ 446 (1135)
.++.|.+||..+++..... +. ... -.........+++. +++++++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~--------~~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FY--------RAN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HH--------HHH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhh----Hh--------hhc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 4789999999998765320 00 000 01122446777774 45566666678999999999987665
Q ss_pred eEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCC-----CCeeEEEeeccCCccEEEEEE--c
Q 001159 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA--I 519 (1135)
Q Consensus 447 ~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s--~ 519 (1135)
.+. .......++++++++ ++++...++.|.+||+.+++....+.... .....+++ . + ..++.+. .
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~-~~lyv~~~~~ 150 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-G-KYVYVNCWSY 150 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-T-TEEEEEECTT
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-C-CEEEEEcCCC
Confidence 333 345689999999985 66666578999999999999887765433 14556666 2 2 3444444 4
Q ss_pred CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCC------CCeEEEEECCCCeEEEEeecccCCceeE
Q 001159 520 DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1135)
Q Consensus 520 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1135)
++.|.+||..+.+....+... .....++++++|++++++..+.+. .+.|.++|..+++....+..........
T Consensus 151 ~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred CCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 899999999988776665543 345678999999876665421000 2689999999999887776543336788
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC-CCCEEEEE----ECCCcEEEEEcCCCchhh
Q 001159 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLL 668 (1135)
Q Consensus 594 i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~~~~ 668 (1135)
++++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.+
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~ 305 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLI 305 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEE
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEE
Confidence 999999999988765 89999999877532111111123578899999 55555665 568899999987 6 444
Q ss_pred hhc
Q 001159 669 RML 671 (1135)
Q Consensus 669 ~~~ 671 (1135)
..+
T Consensus 306 ~~i 308 (328)
T 3dsm_A 306 DEF 308 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.6e-11 Score=133.73 Aligned_cols=281 Identities=9% Similarity=-0.029 Sum_probs=194.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... . +..+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------~------------~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------P------------LPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------c------------CCcccCceeeEEECCCCCEEE
Confidence 346899999999998 66665557899999987 543210 0 112446799999999999888
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-eecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1135)
+...++.|..||.. ++ ... ..+......+.++++.+++. ++++...++.|.+||. +++... ....+...+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999976 32 221 12223455789999999998 7777777889999998 655433 233345678889
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.++ |.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++...
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~- 217 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITE- 217 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEE-
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEE-
Confidence 88764 467776667789999998 4443322 333445788999999998666543 2668999999 666443
Q ss_pred eecc-cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 583 YSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 ~~~~-~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+... ....+..++++++|+.+++...++.|..||. +++ +..+........+.++++ +++.+.++.. .+.+..++.
T Consensus 218 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 218 FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 3221 2236889999999986666657789999998 444 344433333346889999 8887766554 567777777
Q ss_pred CCC
Q 001159 662 SDG 664 (1135)
Q Consensus 662 ~~~ 664 (1135)
.++
T Consensus 294 ~~~ 296 (299)
T 2z2n_A 294 IKD 296 (299)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1e-12 Score=142.96 Aligned_cols=237 Identities=13% Similarity=0.051 Sum_probs=170.3
Q ss_pred cCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEE
Q 001159 405 NDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1135)
Q Consensus 405 ~~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd 483 (1135)
..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+||
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQR 96 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEEC
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEEc
Confidence 34556688999999998 7788888999999999876 33 4556777899999999998 777777788999999
Q ss_pred cCCCeeeeeecCC----CCCeeEEEeeccCCccEEEEEEc-----------------CCeEEEEeCcCCCceeEecCCCC
Q 001159 484 VVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 484 ~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
..+++........ ...+..++++|+ |.++++.+. .+.|..++.. .....+..+..
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~ 172 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRV 172 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCC
Confidence 8888754433211 234667888774 477776321 2345555544 44444555566
Q ss_pred cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC-CCeE---EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
....++|+|+++.+++.. .++.|++|++. ++.. ...+ ......+..++++++|+.+++. ++.|.+|+..
T Consensus 173 ~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 788999999999985443 36789999987 5655 3444 2223356779999999866666 7899999987
Q ss_pred CCceEEEEeCCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCCC
Q 001159 619 NMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 246 -g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 246 -GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 777777775533 789999 5899999988876 4444455444
No 195
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=3.7e-09 Score=131.64 Aligned_cols=537 Identities=11% Similarity=0.075 Sum_probs=312.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcC--CCCeEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--d~~~la 424 (1135)
..|.++...++|..|. .|+.++.+..||..+++...- .... ... ..-....|.++.... +|.+ .
T Consensus 66 n~I~~i~~d~~g~~lW-igt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW-IATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEEE-EEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEEE-EEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 3589999999886233 466665799999887653210 0000 000 001124688988887 6654 4
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeec------ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecC---
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--- 495 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 495 (1135)
.++.++-|..||..+++. . .+.. ....|.++...+++. |..|+.++-|..||..+++.......
T Consensus 132 i~t~~~gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~ 204 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKF-T---HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQN 204 (781)
T ss_dssp EEESSSCEEEEETTTTEE-E---EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC----
T ss_pred EEECCCCeeEEECCCCeE-E---eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCC
Confidence 565444588899876432 1 1211 124588888888775 44455565688999877654322110
Q ss_pred ----CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe-------cCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 496 ----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 496 ----h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
....|.++.... +|. |..|+.+ -+.+||..+....... ......|.++...++|...+...
T Consensus 205 ~~~l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---- 276 (781)
T 3v9f_A 205 PNSLPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE---- 276 (781)
T ss_dssp ----CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES----
T ss_pred cccCCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC----
Confidence 134688887644 333 5555555 6888987654432211 12245789999988887655431
Q ss_pred CCCeEEEEECCCCeEEEEee-------------cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe----
Q 001159 565 GESHLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---- 627 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~-------------~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 627 (1135)
.+-|.++|..++....... +-....|.++..+++|. |..|+.++-|..++...........
T Consensus 277 -~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 277 -LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp -SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred -CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc
Confidence 2348899988765432211 11223688998888876 5566666678889887654332211
Q ss_pred ---CCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCcccccc
Q 001159 628 ---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1135)
Q Consensus 628 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 704 (1135)
..-....|.++...++|.+. .|+.++.|..|+..++. . ..+.. .
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-~-~~~~~-~----------------------------- 401 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV-A-IYNKE-N----------------------------- 401 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE-E-ECC---------------------------------
T ss_pred cccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe-E-EEccC-C-----------------------------
Confidence 11112358888888887654 56666678888865431 0 00000 0
Q ss_pred ccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecC
Q 001159 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNS 784 (1135)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~d 784 (1135)
.......| .++...++
T Consensus 402 ---------------------------------------------------------------~~~~~~~v-~~i~~d~~ 417 (781)
T 3v9f_A 402 ---------------------------------------------------------------RELLSNSV-LCSLKDSE 417 (781)
T ss_dssp -----------------------------------------------------------------CCCSBE-EEEEECTT
T ss_pred ---------------------------------------------------------------CCCCCcce-EEEEECCC
Confidence 00012334 77777777
Q ss_pred CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeE
Q 001159 785 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKV 864 (1135)
Q Consensus 785 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i 864 (1135)
|. |.+++.++-+..++.. ++......... .. ...|.+++..++|++.+... +.|
T Consensus 418 g~-lWigt~~~Gl~~~~~~----------------------~~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl 471 (781)
T 3v9f_A 418 GN-LWFGTYLGNISYYNTR----------------------LKKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGV 471 (781)
T ss_dssp SC-EEEEETTEEEEEECSS----------------------SCEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEE
T ss_pred CC-EEEEeccCCEEEEcCC----------------------CCcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-Cce
Confidence 77 5555554556655432 22211111000 02 56789999988888666544 679
Q ss_pred EEEECCCccEEEEEeCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC----cCCCeEEEEEcC
Q 001159 865 SLFNMMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG----HQNRITGLAFSP 935 (1135)
Q Consensus 865 ~vwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~i~~l~~s~ 935 (1135)
..+|..+++........ ...|.+++..+ ++.+.+ |+.++-|..||..+++.. .+.. ....|.++...+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECT
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC
Confidence 99998876654333222 35799999988 666554 555444888988766533 3321 235689999999
Q ss_pred CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCC
Q 001159 936 TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKD 1015 (1135)
Q Consensus 936 d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~ 1015 (1135)
+|.+.++.. +|.|..||..+++.. ......+-. ...+.++...++|.+.+++.+ .|..++.....+..+...+
T Consensus 549 ~g~lWi~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~~~~~~d 621 (781)
T 3v9f_A 549 KGQMWLATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWASTNT-GISCYITSKKCFYTYDHSN 621 (781)
T ss_dssp TSCEEEEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEECSS-CEEEEETTTTEEEEECGGG
T ss_pred CCCEEEEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEcCC-ceEEEECCCCceEEecccC
Confidence 998777665 665488888776521 122222221 135788999999988777644 4777888555555544333
Q ss_pred CCCC---CEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1016 ALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1016 ~h~~---~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
+... ...++..+++|++++ |+.+| +..++.+.
T Consensus 622 Gl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 622 NIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp TCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred CccccccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 2221 235677788888555 66777 55666553
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.5e-12 Score=139.58 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=166.9
Q ss_pred ceEEEEeecCCCEEEEE-e-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE
Q 001159 843 SAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 920 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~ 920 (1135)
...+++++++|++++++ . ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 77899999999977624 4 68999999866543322223345688999999 777666555 88999999876543 33
Q ss_pred ec-CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeE
Q 001159 921 LK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQI 998 (1135)
Q Consensus 921 l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v 998 (1135)
+. .....+.+++++++|+++++...++.|.+|+..+..... ...... ..+..++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 32 233578999999999988888888899999765543211 111111 346789999999977764 56899
Q ss_pred EEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEe
Q 001159 999 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAP 1078 (1135)
Q Consensus 999 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1135)
.+||..+......... +...+.+++++++|.++++...++.|.+|+..+..... +.. .....+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~---------~~~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF---------TGLNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC---------CSCSCEEEEEE
T ss_pred EEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc---------CCCCCceeEEE
Confidence 9999954443332221 13678999999999877777778999999997654332 110 11135678889
Q ss_pred cCCCCCEEEEEecCCcEEEEecCCCcc
Q 001159 1079 HPSEPNQIALGMSDGAVHVVEPSDAEL 1105 (1135)
Q Consensus 1079 ~~~~~~~l~sg~~dg~v~~W~~~~~~~ 1105 (1135)
++ +|+++++...+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 88 678999999999999999987653
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=1.8e-12 Score=138.14 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=179.0
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCC-cceEEEEEcCCCCeEEEEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~spd~~~las~~~dg~i~iwd~~~ 439 (1135)
+|++++.++.|.+||.++|+.+-+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 788999999999999989987643 22233 4688999999999988 45778999999 6
Q ss_pred CCceeeeeEeecc-cCCEEEEEEecCCCeEEEEEEcC-CCcEEEEEcCCCeeeeeecC------CCCCeeEEEeeccCCc
Q 001159 440 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 511 (1135)
Q Consensus 440 ~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~ 511 (1135)
++.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+| .+|+.+.++.. +......+++.+ +|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd-~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~--~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVN-MKGEVLSKTEFETGIERPHAQFRQINKNK--KG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEEC-TTSCEEEEEEECCSCSSGGGSCSCCEECT--TS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEe-CCCCEEEEEeccCCCCcccccccCceECC--CC
Confidence 76555 34433 34688999999999 7777766 77888888 47887776642 112333444444 56
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC---
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 588 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 588 (1135)
+++++...++.|.+||.+ ++.+..+... ..+.++...++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 7777777654 34556778899999988753 56899999999999999975421
Q ss_pred --CceeEEEecCCCCEEEEEeCC--------CeEEEEEC-CCCceEEEEeCCCCCCCcceEE
Q 001159 589 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 639 (1135)
Q Consensus 589 --~~v~~i~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 639 (1135)
..+..+...++|+.+++.... +..+++.+ .+++.+.++........+.+++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136788889999988887421 23355655 4688888887766666666654
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=4.6e-11 Score=130.03 Aligned_cols=278 Identities=9% Similarity=0.084 Sum_probs=188.2
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .++++.++|+..++...++.|..|+.. +......... + ...+.+++++++
T Consensus 15 ~~~-~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~~ 67 (299)
T 2z2n_A 15 TGP-YGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISSD 67 (299)
T ss_dssp CCE-EEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECTT
T ss_pred CCc-cceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECCC
Confidence 456 899999999976666657888887532 2211111111 2 567889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-EecCcCCCe
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 928 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i 928 (1135)
|++.++.. ++.|..||.. ++. ..+. .....+.++++++ +++++++...++.|..||. +++... .+..+...+
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 99888776 7889999986 333 3332 3456789999999 7888877777889999998 555432 233345678
Q ss_pred EEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCCce
Q 001159 929 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1007 (1135)
Q Consensus 929 ~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~ 1007 (1135)
.++++.++|+++++...++.|..||. +++... .... ... ..+..++++++|.++++. .++.|.+||.++..
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~ 215 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TPA---SGPVGITKGNDDALWFVEIIGNKIGRITTSGEI 215 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CCC---CcceeEEECCCCCEEEEccCCceEEEECCCCcE
Confidence 99999999998888877889999998 554321 1111 111 356799999999977765 47889999994443
Q ss_pred eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1008 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1008 ~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
. .+.. ..+...+.+++++++|+++++...++.|.+||. +++.. .+... .....+.++.+ + ++++.+
T Consensus 216 ~-~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~--------~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 216 T-EFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ--------IKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp E-EEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS--------SSSCCEEEEEE-C-SSCEEE
T ss_pred E-EEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC--------CCCCccceEEe-c-CCCEEE
Confidence 2 2211 123567899999999997776667899999998 45432 22111 11134566777 5 677666
Q ss_pred EEecCCcEEEEecCCCc
Q 001159 1088 LGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~~~ 1104 (1135)
+.. .+.|..++..+.+
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 6778888876643
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=4.8e-13 Score=164.32 Aligned_cols=248 Identities=8% Similarity=-0.088 Sum_probs=162.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEec----cceEEEEEcCCcccc-ccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTN----VGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
|...+.+++|||||++++++.+. +..|++||+.+++.+ .. .+.+. ....++|+||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 34479999999999965554433 358999999998764 11 01111 1267999999
Q ss_pred CCeEEEEeCCCe-------------EEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC----cEEE
Q 001159 420 GLMLGVAFSKHI-------------VHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKV 481 (1135)
Q Consensus 420 ~~~las~~~dg~-------------i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~----~i~i 481 (1135)
|+.|+.++.|.. |++|++.++... ........|...+.++.|+|||+. |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999887532 122223345668999999999994 55444444 6777
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE---cCCeEEEEeCcCCCc---eeEecCC-CCcEEEEEEcCCCC
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGT 554 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~~~~ 554 (1135)
||..++. ...+..+...+....+ ++ |.+++... .++.|.+||+.+.+. ...+..+ ...+..++++ ++.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~--g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WK--DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ET--TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cC--CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 7655554 4455556666666665 33 35444443 358899999987653 2333333 4467888887 555
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe----CCCeEEEEECCCCce
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 622 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1135)
.+++... ++...|.++++ +++..+.+..+....+..++++++++.++... ..++|++||+.+++.
T Consensus 332 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLK--DATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE--TTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 5666543 22334445554 35566666665344677888999998777432 457899999998774
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=3.1e-11 Score=134.57 Aligned_cols=274 Identities=9% Similarity=-0.007 Sum_probs=182.0
Q ss_pred EEecCCCeEEEEEe-ccc---eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe-
Q 001159 353 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 427 (1135)
Q Consensus 353 ~~sp~g~~lla~g~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~- 427 (1135)
...|++++++++-. ..+ .|.+||..+++.+.+ +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577765444332 233 889999998876542 1112223 899999999999886
Q ss_pred ---------CCCeEEEEEeCCCCceeeeeEee--cc---cCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeee
Q 001159 428 ---------SKHIVHLYTYNPTGELRQHLEID--AH---VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQY 491 (1135)
Q Consensus 428 ---------~dg~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~ 491 (1135)
.++.|.+||..+.+.+.... +. .+ ......++|+|||+ +|+.+. .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999998876554321 11 00 12345899999999 455544 357899999 9999887
Q ss_pred e-ecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec-----CCCCc-EEEEEEcCCCCEEEEEecCCC
Q 001159 492 T-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 492 ~-~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+ +.. .+ ++.+.|.+. ..+++.+.||.+.++|. +++...... ..... .....+.+++..++..+.
T Consensus 162 ~~i~~-~~---~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSS-PT---CYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCC-Cc---eEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 642 22 234445543 46677888999999999 665542221 11112 233456676665554432
Q ss_pred CCCeEEEEECCCCe--EEEEeeccc---------CCceeEEEecCCCCEEEEEeC----------CCeEEEEECCCCceE
Q 001159 565 GESHLVEWNESEGA--IKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNML 623 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~--~~~~~~~~~---------~~~v~~i~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 623 (1135)
.+.+.+.|..++. .+..+.... ......+.+++++++++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 5679999987553 233332110 112344789999998888653 357999999999999
Q ss_pred EEEeCCCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCC
Q 001159 624 TTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDG 664 (1135)
Q Consensus 624 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~ 664 (1135)
.++.... ...+++|+|||+ +++++. .++.|.+||..++
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9997543 468999999999 777776 4899999999988
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=1.3e-12 Score=161.73 Aligned_cols=247 Identities=10% Similarity=0.036 Sum_probs=164.0
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCC-----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCc--
Q 001159 406 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~-- 478 (1135)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455578999999999999988654 4699999999875431 112222357899999 8 5555555443
Q ss_pred ------------EEEEEcCCCee----eeeecCCCCCeeEEEeeccCCccEEEEEEcCC-----eEEEEeCcCC--Ccee
Q 001159 479 ------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 535 (1135)
Q Consensus 479 ------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~--~~~~ 535 (1135)
|++|++.++.. +.....+...+..+.|+|++ ++|+..+.++ .|++||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 89999987652 22223344458888897754 7787777544 8999999876 3134
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC-eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEE
Q 001159 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 536 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i 614 (1135)
.+..+...+... ++|+|+.|+..+.....++.|.+||+.++ .....+..+....+..++++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 444444444444 34899999887654334678999999875 23333333333357777777 5566777888888777
Q ss_pred EECC-CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEEcCCC
Q 001159 615 WDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1135)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 664 (1135)
|.++ +++....+..+. ...+..+.++|+++.++... ..++|.+||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455666665432 23578889999988666332 2478999999877
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=3.8e-12 Score=136.38 Aligned_cols=240 Identities=8% Similarity=-0.057 Sum_probs=167.3
Q ss_pred CeeEEEEecCCCeEEE-EEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 348 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
...+++++|+|+ +++ +.+.++.|.+|+..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 666 556788999999765442210 11233567889999999966665
Q ss_pred eCCCeEEEEEeCCCCceeeeeEee-cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEe
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1135)
. ++.|.+||..+.... .+. .....+.+++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 122 2335689999999998 7777777889999986555433322233346788888
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
++++ .++++...++.|.+||................+.+++++++|...++.. .++.|.+||............
T Consensus 158 ~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DNSG--NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CTTC--CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eCCC--CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 7744 6777777789999999876554433233336788999999996666553 367799999876544332222
Q ss_pred ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+. ..+..++++++|+.+++...++.|+++++...+
T Consensus 232 ~~-~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 GL-NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SC-SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 22 268899999999988888889999999987654
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=2.3e-12 Score=140.64 Aligned_cols=281 Identities=10% Similarity=-0.001 Sum_probs=186.5
Q ss_pred EEecCCcceeEecc-----cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 780 IYTNSGLSLLALAS-----NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 780 ~~s~dg~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
...|+++.+++... ++.+.+.| ..+++++...-.+ ..+ . +++||||+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD----------------------~~t~~v~~~I~vG----~~P-~-va~spDG~ 90 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVID----------------------GEAGRVIGMIDGG----FLP-N-PVVADDGS 90 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEE----------------------TTTTEEEEEEEEC----SSC-E-EEECTTSS
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEE----------------------CCCCeEEEEEECC----CCC-c-EEECCCCC
Confidence 34678887777765 45666664 4444444333222 333 3 99999999
Q ss_pred EEEEEe-----------CCeEEEEECCCccEEEEEeCCC-------CCeEEEEEecCCCcEEEEEeC--CCcEEEEEccc
Q 001159 855 YVMSAS-----------GGKVSLFNMMTFKVMTMFMSPP-------PAATFLAFHPQDNNIIAIGME--DSSVQIYNVRV 914 (1135)
Q Consensus 855 ~la~~~-----------dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~ 914 (1135)
++.+++ ++.|.+||..+++.+.++.-.. .....++|+| ||++|+++.. ++.|.++|+.+
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCC
Confidence 887764 4679999999999998875322 2456799999 8888887763 68999999999
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC-CceeceeeeecCCCCCCCCCCc-eEEEE-CCCCcEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGE-TKVQF-HNDQTHLL 991 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~dg~~l~ 991 (1135)
++.+.++.... . ...+....+.+++.+.||.+.+.++.+ ++..... ..... ....++ ....| .++|++++
T Consensus 170 ~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~ 242 (386)
T 3sjl_D 170 KAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVW 242 (386)
T ss_dssp TEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEE
T ss_pred CcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEE
Confidence 99998885322 1 233444556777888899999999876 4432111 01100 000122 22466 47888888
Q ss_pred EEecCeEEEEecCCce---eeccCCC-------CCCCCCEEEEEEeeCCCEEEEEeC----------CCeEEEEECCCce
Q 001159 992 VVHESQISVYDSKLEC---SRSWSPK-------DALPAPISSAIYSCDGLLVYAGFC----------DGAIGVFDAETLR 1051 (1135)
Q Consensus 992 ~~~d~~v~vwd~~~~~---~~~~~~~-------~~h~~~i~~~~~s~d~~~l~~~~~----------dg~I~vwd~~~~~ 1051 (1135)
++.++.|.+.|..+.. +..+... .-.......++++++++.|+.... .+.|.+.|+.+++
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 8888999999994332 2222100 000123345788999998887643 2579999999999
Q ss_pred eeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEE-ecCCcEEEEecCCCccccC
Q 001159 1052 FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALG-MSDGAVHVVEPSDAELKWG 1108 (1135)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg-~~dg~v~~W~~~~~~~~~~ 1108 (1135)
.+.++... ..+..+.+++ |++ +|+++ ..++.|.++|..+++..-.
T Consensus 323 v~~~i~vg-----------~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 323 RLAKFEMG-----------HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEEE-----------EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEEECC-----------CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 99988744 2344788888 554 66664 4589999999999884433
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=2.3e-11 Score=135.58 Aligned_cols=239 Identities=13% Similarity=0.028 Sum_probs=163.3
Q ss_pred EEEeecCCCEEEEEe-----------CCeEEEEECCCccEEEEEeCC-------CCCeEEEEEecCCCcEEEEEeC--CC
Q 001159 846 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 905 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~lasg~~--dg 905 (1135)
.+++||||++++++. ++.|.+||..+++.+.++... ......++|+| ||++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998884 467999999999888877532 12345899999 8898888874 57
Q ss_pred cEEEEEcccceeeEE-ecCcCCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceeceeeeec-CCCCCCCCCCceEEE
Q 001159 906 SVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGRQSPLVGETKVQ 982 (1135)
Q Consensus 906 ~v~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~ 982 (1135)
.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.||.+.++|. +++......... ..+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99998877 6532 2 24455665 46677788999999999 776442111000 01100 1112345
Q ss_pred ECCCCcE-EEEEecCeEEEEecCCce---eeccCCCC-------CCCCCEEEEEEeeCCCEEEEEeC----------CCe
Q 001159 983 FHNDQTH-LLVVHESQISVYDSKLEC---SRSWSPKD-------ALPAPISSAIYSCDGLLVYAGFC----------DGA 1041 (1135)
Q Consensus 983 ~s~dg~~-l~~~~d~~v~vwd~~~~~---~~~~~~~~-------~h~~~i~~~~~s~d~~~l~~~~~----------dg~ 1041 (1135)
+.+++.. ++++..+.+.+.|..... +..+.... -.......+++++|++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6676654 444667889999983221 12221100 01223445889999998877653 357
Q ss_pred EEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEEecCCCccc
Q 001159 1042 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAELK 1106 (1135)
Q Consensus 1042 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W~~~~~~~~ 1106 (1135)
|.++|+.+++.+.++... ..+.++.|+| ||+ +++++. .+++|.+||+.+++..
T Consensus 300 V~VID~~t~~vv~~i~~g-----------~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG-----------HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEEECCCCEEEEEEECC-----------CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999999999999888533 2456889999 677 777777 5899999999988744
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=1.4e-11 Score=134.50 Aligned_cols=312 Identities=7% Similarity=-0.066 Sum_probs=199.1
Q ss_pred ccCCccEEEEEEc-----CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecC------CCCCCeEEEEECC
Q 001159 507 HKESIQFIFSTAI-----DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS------KEGESHLVEWNES 575 (1135)
Q Consensus 507 ~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~------~~~~~~i~~wd~~ 575 (1135)
|.+++..++.... ++.|.+.|..+.+.+..+.....+ . ++++|||++++++... ++.++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 3445577777765 689999999998888777655555 4 9999999999876420 0125679999999
Q ss_pred CCeEEEEeeccc------CCceeEEEecCCCCEEEEEeC--CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEE
Q 001159 576 EGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 576 ~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 647 (1135)
+++.+..+.... +.....+.|+|||++++++.. ++.|.++|+.+++.+.++...+ . ...+....+.+
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTF 192 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E-EEEEEEETTEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c-ceeecCCCcee
Confidence 999998876432 113456899999999998863 6899999999999999996532 1 22333345677
Q ss_pred EEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 001159 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1135)
++.+.||.+.+.++.+...... ... .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~---~~~-~-------------------------------------------------- 218 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEI---THT-E-------------------------------------------------- 218 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEE---EEC-C--------------------------------------------------
T ss_pred EEECCCCCEEEEECCCCCeEEE---eec-c--------------------------------------------------
Confidence 7888899999998866212210 000 0
Q ss_pred CCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEE-ecCCcceeEecccceeeeEEecccc
Q 001159 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIY-TNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
+.+.. ...+.....| .++|++++ .+.+|.+.+.|+....
T Consensus 219 ---------------------~~~~~------------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 219 ---------------------VFHPE------------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp ---------------------CCSCT------------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred ---------------------eeccc------------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 00000 0000011233 35665444 3446777777654322
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-----------CCeEEEEECCCccEE
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVM 875 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~ 875 (1135)
...... |++.+...+ ..+ -. ......++++++++.+.+.. .++|.+.|+.+++.+
T Consensus 259 ~~v~~~---------~~~~~~~~~---~~g-~~-p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 259 AKFLPA---------VEALTEAER---ADG-WR-PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp CEECCC---------EESSCHHHH---HTT-EE-ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred ceeecc---------eeccccccc---ccc-cc-CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 111000 010000000 000 00 22334578899999888764 146999999999999
Q ss_pred EEEeCCCCCeEEEEEecCCCc-EEEEE-eCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCC
Q 001159 876 TMFMSPPPAATFLAFHPQDNN-IIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 936 (1135)
Q Consensus 876 ~~~~~h~~~v~~l~~sp~~~~-~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 936 (1135)
+.+... ..+..|+|++ |++ +|+++ ..++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 325 ~~i~vg-~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 325 AKFEMG-HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEE-EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EEEECC-CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 998632 3688999999 665 66665 45899999999999999888643 33456777776
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=1.8e-10 Score=125.40 Aligned_cols=278 Identities=10% Similarity=-0.006 Sum_probs=191.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
....+.++++.++|+ ++++...++.|.+||.. ++... + . +..+...+.++++.++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---~------------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---E------------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---E------------CSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---E------------CCCCCCcceeEEECCCCCEEE
Confidence 346899999999998 66666678899999987 44321 0 0 122346789999999999888
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeee-eecCCCCCeeEE
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1135)
+...++.|..||.. ++. . ...+......+.++++.++|. ++++...++.|..||.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 443 2 112233446789999999998 67777778899999977 55442 233345678888
Q ss_pred EeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
++.+++ .+.++...++.|..||. +++... ........+..++++++|+..++.. ..+.|.+||. ++.....
T Consensus 152 ~~d~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSDN--ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTTS--SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCCC--CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 887654 66666666789999988 333322 2223445788999999997666543 2567999998 5554433
Q ss_pred -eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 583 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 583 -~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
+.... ..+.+++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 26788999999986666666789999998 44433 333332334678999999998666554 4 6766664
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=1.3e-11 Score=152.63 Aligned_cols=245 Identities=8% Similarity=-0.030 Sum_probs=158.7
Q ss_pred CCeeEEEEecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~ 422 (1135)
..+..++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999996555544333 699999999876431 011222357899999 99
Q ss_pred EEEEeCCCe--------------EEEEEeCCCCcee-eeeEeecccCCEEEEEEecCCCeEEEEEEcC-----CCcEEEE
Q 001159 423 LGVAFSKHI--------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVW 482 (1135)
Q Consensus 423 las~~~dg~--------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d~~i~iw 482 (1135)
|+.++.++. |++|++.++.... .......+...+..+.|+|||+. |+..+. ...|++|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEE
Confidence 999887654 8899987765321 11122223346899999999994 444443 3489999
Q ss_pred EcCCC--eeeeeecCCCCCeeEEEeeccCCccEEEEEEc----CCeEEEEeCcCCC-c-eeEecCCCCcEEEEEEcCCCC
Q 001159 483 DVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-S-RVDYDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 483 d~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s~~~~ 554 (1135)
|+.++ ++...+..+...+.... .|++ +.|+..+. ++.|.+||+.+.. . ...+..+...+..++++ ++.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~-~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFV-DGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEE-EEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred ECCCCCCcccEEecCCCCceEEEE-eccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 99887 31455655655555553 3543 66766665 4559999988742 3 33344444566677777 444
Q ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-e---CCCeEEEEECCCCc
Q 001159 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNMN 621 (1135)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~---~dg~i~iwd~~~~~ 621 (1135)
.+++... ++...|++++. ++...+.+..+....+..+.++|+++.++.. + ..++|++||+.+++
T Consensus 376 lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 376 LFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5555543 23344555665 4566666665434478889999998766532 2 45789999999876
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=6.4e-10 Score=120.96 Aligned_cols=276 Identities=9% Similarity=0.044 Sum_probs=185.9
Q ss_pred cceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC
Q 001159 773 SKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 852 (1135)
Q Consensus 773 ~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d 852 (1135)
..+ .++++.++|+..++...++.|.+|+.. +......... + ...+..++++++
T Consensus 20 ~~p-~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~~ 72 (300)
T 2qc5_A 20 SGP-YGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSSL 72 (300)
T ss_dssp CCE-EEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECTT
T ss_pred CCc-ceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECCC
Confidence 445 899999999977766667888887532 1111111111 2 467889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCccEEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE-EecCcCCCeE
Q 001159 853 DSYVMSAS-GGKVSLFNMMTFKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRIT 929 (1135)
Q Consensus 853 g~~la~~~-dg~i~vwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~i~ 929 (1135)
|++.++.. ++.|..||.. ++.... +......+.++++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99877766 6889999988 554322 222446789999999 78887777668899999987 55442 2333456789
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCCcee
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECS 1008 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~~~~ 1008 (1135)
++++.++|+++++...++.|..++. +++... .... ... ..+..++++++|.++++. ..+.|.+|+.++...
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~ 221 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITTTGEIS 221 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECTTCCEE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcCCCcEE
Confidence 9999999998888777888999998 444221 1111 111 357899999999877775 456899999855443
Q ss_pred eccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1009 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1009 ~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..... .+...+.+++++++|++.++...++.|..|+. +++.. .+... .....+.++...+ +|++.++
T Consensus 222 ~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~--------~~~~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 222 EYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ--------TENAEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC--------STTCCCCCEEECT-TSCEEEE
T ss_pred EEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC--------ccCCccceeEeCC-CCCEEEE
Confidence 32221 22567899999999997776666799999998 45443 22111 0113345677777 5676665
Q ss_pred EecCCcEEEEecC
Q 001159 1089 GMSDGAVHVVEPS 1101 (1135)
Q Consensus 1089 g~~dg~v~~W~~~ 1101 (1135)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 54 4 77777653
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=3.2e-11 Score=134.42 Aligned_cols=278 Identities=10% Similarity=0.095 Sum_probs=188.0
Q ss_pred cCCCeEEEEEecc----ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe----
Q 001159 356 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 427 (1135)
Q Consensus 356 p~g~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~---- 427 (1135)
|++++++++...+ +.|.+.|..+++.+.+ +.--..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 7999999999887654 1112234 799999999988886
Q ss_pred ------CCCeEEEEEeCCCCceeeeeEee--c---ccCCEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeeeeec
Q 001159 428 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 494 (1135)
.++.|.++|..+.+.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665332 21 0 0123456899999994 44443 36899999999999988876
Q ss_pred CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE----ecCCCCc-EEEEEEcCCCCEEEEEecCCCCCCeE
Q 001159 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 569 (1135)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1135)
-.. . ....|.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 23334433 5677788899988888844433321 1111111 123567899888777653 5689
Q ss_pred EEEECCCCeEE--EEeecc---------cCCceeEEEecCCCCEEEEEeC----------CCeEEEEECCCCceEEEEeC
Q 001159 570 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~i~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 628 (1135)
.+.|...+... ..+... .......++++++++++++... ++.|.+.|..+.+.+.++..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111110 0001223789999988877642 35799999999999999875
Q ss_pred CCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEEcCCCchhhhh
Q 001159 629 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 670 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 670 (1135)
.. ....++|+|||+ ++++.. .++.|.++|..++ +.++.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t 408 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS 408 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence 43 368999999999 888887 5899999999998 44444
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.37 E-value=6.2e-11 Score=132.14 Aligned_cols=258 Identities=14% Similarity=0.072 Sum_probs=169.7
Q ss_pred cCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-----------CCeEEEEECCCccEEEEEeCC-------CCC
Q 001159 823 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPA 884 (1135)
Q Consensus 823 ~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~h-------~~~ 884 (1135)
|..+++++...-.+ ..+ .+++||||++++++. ++.|.++|..+++.+.++.-. ...
T Consensus 105 D~~t~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 105 DGSTGRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp ETTTTEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred ECCCCEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 44555544433323 333 899999999888774 467999999999999887532 234
Q ss_pred eEEEEEecCCCcEEEEEeC--CCcEEEEEcccceeeEEecCcCCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceec
Q 001159 885 ATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLK 961 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~ 961 (1135)
...++|+| |+++|+++.. ++.|.+.|+.+++.+.++.--. . ....|++ ..+++.+.||.+.+.+..+++...
T Consensus 179 P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 179 QWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp GGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred cceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 56799999 8888888764 5789999999999888876421 1 2333443 555666777877777775544321
Q ss_pred eeeeecCCCCCCCCCCceEEEECCCCcEEEE-EecCeEEEEecCCceeec---cCCCC----C---CCCCEEEEEEeeCC
Q 001159 962 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRS---WSPKD----A---LPAPISSAIYSCDG 1030 (1135)
Q Consensus 962 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~~~~~~~~---~~~~~----~---h~~~i~~~~~s~d~ 1030 (1135)
... ....-... .....+.|++++..++. +..+.|.+.|.....+.. +.... . .......++|++|+
T Consensus 254 ~~~-~~~~v~~~--p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 254 TNT-EVFHTEDE--LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp EEC-CCCSCTTS--CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred Eee-eeeccCCC--ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 100 00100000 01124578999887666 567889999983332211 11000 0 01112236899999
Q ss_pred CEEEEEeC----------CCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEE
Q 001159 1031 LLVYAGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVV 1098 (1135)
Q Consensus 1031 ~~l~~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W 1098 (1135)
++++++.. ++.|.|+|..+++.+.++... ..+..+.++| ||+ +++++. .++.|.++
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-----------~~P~gia~sp-Dg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-----------HEIDSINVSQ-DAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----------CCcCeEEEcc-CCCEEEEEEcCCCCeEEEE
Confidence 98777643 357999999999999988643 2456789999 677 888877 59999999
Q ss_pred ecCCCccc
Q 001159 1099 EPSDAELK 1106 (1135)
Q Consensus 1099 ~~~~~~~~ 1106 (1135)
|+.+.+..
T Consensus 399 D~~t~kvv 406 (426)
T 3c75_H 399 DAATGEEL 406 (426)
T ss_dssp ETTTCCEE
T ss_pred ECCCCCEE
Confidence 99998843
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=1.8e-10 Score=126.36 Aligned_cols=243 Identities=12% Similarity=0.050 Sum_probs=164.9
Q ss_pred CcceEEEEEcCCCCeEEE-------EeCCCeEEEEEeCCCCceeeee-EeecccCCEEEEEEecC-CCeEEEEEEcCCCc
Q 001159 408 AISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKM 478 (1135)
Q Consensus 408 ~~~V~~v~~spd~~~las-------~~~dg~i~iwd~~~~~~~~~~~-~l~~h~~~v~~v~~s~d-~~~~~l~s~~~d~~ 478 (1135)
-....+++|+++|+++++ +..++.|.+||..+++...... ...++...+.+++++++ +. ++++.. .+.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CCC
Confidence 345789999999988887 5778899999988765422100 00125567999999999 65 445444 447
Q ss_pred EEEEEcCCCeeeee-ecC----CCCCeeEEEeeccCCccEEEEEEcC---------------CeEEEEeCcCCCceeEec
Q 001159 479 IKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 479 i~iwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~ 538 (1135)
|.+||.. ++.... ... ....+.++++.++ |.+.++...+ +.|..||.. ++ ...+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEec
Confidence 9999987 665433 221 1235788998775 4666666554 567777655 33 22222
Q ss_pred CCCCcEEEEEEc----CCCCEEEEEecCCCCCCeEEEEECC-CCeE-----EEEeecccCCceeEEEecCCCCEEEEEeC
Q 001159 539 APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGAI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1135)
Q Consensus 539 ~~~~~i~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-----~~~~~~~~~~~v~~i~~s~~~~~l~~~~~ 608 (1135)
........++++ ++++.++.+.. .++.|.+||.. +++. ...+..+.......++++++|+.+++...
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred cCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 233356788999 99987766542 36789999976 4542 22333332025778999999988888878
Q ss_pred CCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEEcCC
Q 001159 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1135)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 663 (1135)
++.|.+||..+++.+..+..+. ..+.+++|+++++.|.++ ..++.|..|+...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8999999998777777666543 368899999999955544 4568899998764
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=2e-10 Score=126.09 Aligned_cols=244 Identities=10% Similarity=0.058 Sum_probs=162.8
Q ss_pred CCeeEEEEecCCCeEEEE-------EeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC
Q 001159 347 SNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd 419 (1135)
....+++|+++|+ ++++ +..++.|.+||..+++.... .. + ...++...+.+++++++
T Consensus 18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------~~-------~--~~~~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CK-------P--EVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------EC-------C--EETTEECCEEEEEECSS
T ss_pred CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE------Ee-------c--ccCCCCCCCceEEEecC
Confidence 4678999999997 6776 56788999999887764321 00 0 01134567899999999
Q ss_pred -CCeEEEEeCCCeEEEEEeCCCCceee-eeEeec-ccCCEEEEEEecCCCeEEEEEEcCC---------------CcEEE
Q 001159 420 -GLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIKV 481 (1135)
Q Consensus 420 -~~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d---------------~~i~i 481 (1135)
|+++++. ..+.|.+||.. ++.... .....+ ....+.++++.++|. ++++...+ +.|..
T Consensus 82 ~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEE
Confidence 7655554 44479999988 543221 100001 123588999999997 56665544 56777
Q ss_pred EEcCCCeeeeeecCCCCCeeEEEee----ccCCccEEEEE-EcCCeEEEEeCcC-CCc-----eeEecCCC-CcEEEEEE
Q 001159 482 WDVVAGRKQYTFEGHEAPVYSVCPH----HKESIQFIFST-AIDGKIKAWLYDY-LGS-----RVDYDAPG-NWCTMMAY 549 (1135)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~----~~~~~~~l~s~-s~dg~i~iwd~~~-~~~-----~~~~~~~~-~~i~~~~~ 549 (1135)
||.. ++... +..+......++++ ++ ++.++.+ ..++.|.+||++. +.. ...+..+. ..+..+++
T Consensus 158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~d--g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGR--PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp ECTT-SCEEE-EEEEESSEEEEEEEECTTSC--EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred ECCC-CCEEE-eccCCCCcceEEEecccCCC--CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 7755 55433 22334456788887 54 4555444 5689999999863 221 11223333 56788999
Q ss_pred cCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE-eCCCeEEEEECCC
Q 001159 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDN 619 (1135)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1135)
+++|+..++... ++.|.+||..+++.+..+..+.. .+.+++|+++++.|+++ ..++.|..|++..
T Consensus 234 d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999988777643 66899999988887777766544 78899999999966554 4668899999864
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=4.5e-10 Score=127.11 Aligned_cols=252 Identities=12% Similarity=0.021 Sum_probs=166.1
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg--~v~iwd~~~~~~ 917 (1135)
-.....++++++|+++++.. ++.|++||..++........ ..... ++|+| +++.|+++..++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34678999999999766665 68999999998877665554 33334 99999 788888888766 799998876654
Q ss_pred eEEe----cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 918 KTKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 918 ~~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
...+ ..+...+.+++++|++..|..+..++.|+.||..++........ ...+... ..+...++|+|++..|.++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~-~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLG-TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCC-CSSCCEEEEETTTTEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCC-CCccccEEEeCCCCEEEEE
Confidence 4444 32556788999999544555577788999999987653211000 0111110 0111399999965544443
Q ss_pred --ecCeEEEEecCCceeeccCCCC---C---------CCCCEEEEEEeeCCCEEEEEe-CCCeEEEEECCCceeeeeeCC
Q 001159 994 --HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 994 --~d~~v~vwd~~~~~~~~~~~~~---~---------h~~~i~~~~~s~d~~~l~~~~-~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.++.|+.|+..+.... +.... + .-.....++++++|+++++-+ .+++|+.|++.+|..... ..
T Consensus 285 d~~~~~I~~~~~~g~~~~-~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~-~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECEW-FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV-AG 362 (409)
T ss_dssp ETTTTEEEEECTTCCEEE-EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE-EE
T ss_pred eCCCCEEEEEecCCCEEE-EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE-eC
Confidence 5788999998654222 11110 0 023478999999999888777 889999999888875432 21
Q ss_pred ceecc---cc--ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1059 SAYIP---TY--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1059 ~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
+.... .+ ....-..+..+++++ +++++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 10000 00 001124577899999 5788888888888988765
No 214
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.32 E-value=3.4e-06 Score=100.14 Aligned_cols=531 Identities=10% Similarity=-0.026 Sum_probs=289.4
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1135)
+|+.+ ....|+..++.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 55678999998654221 11122 2346889999997775 556666788999999765443333332334567
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1135)
.+++.+.. +++.++-...+.|.+.+++...........-.....+++.|....|+..-. ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 88887653 256666667789999998765444434344456789999997667766532 125678888876443332
Q ss_pred EeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEE
Q 001159 582 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 582 ~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
... .- .....++++++++.|+.+. ..+.|...+++.... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~-~~-~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP-NV-GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC-SC-SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC-CC-CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 232 22 2577899999877777664 567899999876544 333322 22346777765 44444544578888888
Q ss_pred cCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc-ccCCC--C-ccccc
Q 001159 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL-GTIDG--S-RLVDV 736 (1135)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~ 736 (1135)
..++.. ...+........ .+.. +.+... +....... .+++. . ..+.+
T Consensus 235 k~tg~~-~~~l~~~~~~p~------------~i~v------------~~~~~q----~~~n~C~~~ng~C~~~C~~~~~~ 285 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDYVM------------DILV------------FHSSRQ----SGWNECASSNGHCSHLCLAVPVG 285 (628)
T ss_dssp TTTCCS-CEEEECSCCSCC------------EEEE------------ECGGGS----CCCCTTTTTGGGCSSEEEEETTT
T ss_pred CCCCCc-eEEEecCCCCcc------------eeee------------eeeccc----ccceEeccCCCCcchhhhcCCCC
Confidence 777632 222221110000 0000 000000 00000000 00000 0 00000
Q ss_pred ccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCccccc
Q 001159 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 816 (1135)
Q Consensus 737 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 816 (1135)
.+...+..+.. + ..... +|.. + ...|+.+. ...|+-..+..
T Consensus 286 ~~~C~C~~g~~----l------------------~~d~~-~C~~--~-~~~Ll~s~-~~~i~~i~l~~------------ 326 (628)
T 4a0p_A 286 GFVCGCPAHYS----L------------------NADNR-TCSA--P-TTFLLFSQ-KSAINRMVIDE------------ 326 (628)
T ss_dssp EEEEECSTTCE----E------------------CTTSS-CEEC--C-SSEEEEEE-TTEEEEECCCT------------
T ss_pred CeeEEcCCCcE----e------------------cccCC-cCcc--c-cceeeeec-cceEEEEeccc------------
Confidence 00000000000 0 00000 1111 1 12222222 22333222110
Q ss_pred ccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC------CCCCeEEE
Q 001159 817 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFL 888 (1135)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~------h~~~v~~l 888 (1135)
...........+ -..+.+++|.+.+..|..+. .+.|+.+++........+.. ....+..+
T Consensus 327 --------~~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 327 --------QQSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp --------TCCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEE
T ss_pred --------ccCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceE
Confidence 000001111111 45688999999888888776 58899998875443333322 23468899
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcC-CCCeEEEEcCCC--cEEEEeCCCCceeceee
Q 001159 889 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRF 964 (1135)
Q Consensus 889 ~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~-d~~~l~s~~~D~--~i~iwd~~~~~~~~~~~ 964 (1135)
|+....+++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++++-.... .|...+++..... . .
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~-l 471 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-V-L 471 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-E-E
T ss_pred EeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-E-E
Confidence 9998444555566677899999986 4444343 34456789999999 555555543332 4666666543321 1 1
Q ss_pred eecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeE
Q 001159 965 IQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1042 (1135)
Q Consensus 965 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I 1042 (1135)
+.. . ......++++++++.|..+ ..+.|...++++.....+... ......++++.. +.++++-...+.|
T Consensus 472 ~~~-~-----l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i 542 (628)
T 4a0p_A 472 FFS-G-----LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMI 542 (628)
T ss_dssp ECS-S-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEE
T ss_pred Eec-c-----CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeE
Confidence 111 1 1345899999998888775 457899999855554444321 133456777755 5666666677889
Q ss_pred EEEECCCceeeeeeC
Q 001159 1043 GVFDAETLRFRCRIG 1057 (1135)
Q Consensus 1043 ~vwd~~~~~~~~~~~ 1057 (1135)
...|..+|+....+.
T Consensus 543 ~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 543 EKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEETTSSSCCEEEE
T ss_pred EEEECcCCCCcEEEe
Confidence 999988887554443
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=5.6e-10 Score=126.34 Aligned_cols=240 Identities=10% Similarity=-0.001 Sum_probs=163.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
.....++|+|+|+ ++++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999997 778777789999999987654321 111 22233 9999999999998
Q ss_pred eCCC--eEEEEEeCCCCceeeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee----ecCCCCC
Q 001159 427 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 499 (1135)
Q Consensus 427 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 499 (1135)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788998877654332211112 445678999999655 344466788999999887764322 2222222
Q ss_pred e--eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---------------CcEEEEEEcCCCCEEEEEecC
Q 001159 500 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------NWCTMMAYSADGTRLFSCGTS 562 (1135)
Q Consensus 500 v--~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~~~ 562 (1135)
- ..++|+|.. +.++++-..++.|+.|+.+.. ...+.+.. .....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998853 366777777899999987643 22222221 3478999999999555543
Q ss_pred CCCCCeEEEEECCCCeEEEEeeccc--------------CCceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001159 563 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1135)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~ 617 (1135)
..++.|+.|++.++... .+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 03778999998777743 343330 114778999999877777778888888765
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.31 E-value=2.7e-10 Score=139.39 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=165.2
Q ss_pred CCCeeEEEEecCCCeEEEEEecc----ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcc--eEEEEEcCC
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VNRCVWGPD 419 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~spd 419 (1135)
...+..++|||||++++.+.+.. ..|+|||+.+|+.+.. +... ...++|+ |
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----------------------~~~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----------------------PLKDVKFSGISWL-G 184 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----------------------EEEEEESCCCEEE-T
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----------------------ccCCceeccEEEe-C
Confidence 34688999999999655544333 4799999999875431 1112 3578999 9
Q ss_pred CCeEEEEeCCC-------------eEEEEEeCCCCcee-eeeEeec-ccCCEEEEEEecCCCeEEEEEEc--CCCcEEEE
Q 001159 420 GLMLGVAFSKH-------------IVHLYTYNPTGELR-QHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVW 482 (1135)
Q Consensus 420 ~~~las~~~dg-------------~i~iwd~~~~~~~~-~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~--~d~~i~iw 482 (1135)
|+.|+.++.+. .|++|++.++..-. .+..... |...+.++.|+|||+.+++.+.. .+..|++|
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK 264 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence 99999998774 39999998764321 1112223 45567899999999963332222 23589999
Q ss_pred EcCCCe-eeeeecCCCCCeeEEEeeccCCccEEEEEEcC---CeEEEEeCcCCCc--eeEecCCCCcEEEEEEcCCCCEE
Q 001159 483 DVVAGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 483 d~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l 556 (1135)
|+.++. ....+..+....... +++.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 998764 455666666666554 444432 445555443 6799999987654 234555555554 889999998
Q ss_pred EEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC----CeEEEEECCCCceE
Q 001159 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 623 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1135)
+..... ++...|++||+..+ ..+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 877642 33457999998754 4455544333357777888888777665444 88999999887643
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=6e-10 Score=120.74 Aligned_cols=228 Identities=8% Similarity=0.082 Sum_probs=154.2
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
-.-+..|+|++..++++...++.|..||..+++... ......+.+++++|+|+++++ .
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~-~ 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVAT-I 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEE-E
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEE-E
Confidence 456889999777788888888999999998765421 113457999999999995554 3
Q ss_pred CCCeEEEEEeCCCCceeeeeEeec--ccCCEEEEEEecCCCeEEEEEE-cC--------CCcEEEEEcCCCeeeeeecCC
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVVAGRKQYTFEGH 496 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~--h~~~v~~v~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~~~~~h 496 (1135)
++.|.+||..+++.. ....... ....+.+++++|+|+ ++++. +. ...-.||.+.....+..+..+
T Consensus 72 -~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 147 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ 147 (297)
T ss_dssp -TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred -CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence 567999999876432 1111111 123588999999998 44443 22 133455555432222333334
Q ss_pred CCCeeEEEeeccCCccEE-EEEEcCCeEEEEeCc--CCCce-----eEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCe
Q 001159 497 EAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1135)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1135)
....+.++|+|++ +.+ ++.+.++.|.+||++ ++... ..+......+..++++++|++.++... .+.
T Consensus 148 ~~~pngi~~spdg--~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~~ 221 (297)
T 3g4e_A 148 VDISNGLDWSLDH--KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GGR 221 (297)
T ss_dssp ESBEEEEEECTTS--CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TTE
T ss_pred cccccceEEcCCC--CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CCE
Confidence 4456789998865 544 566678999999974 33221 122223356789999999987666542 567
Q ss_pred EEEEECCCCeEEEEeecccCCceeEEEec-CCCCEEEEEeC
Q 001159 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~~ 608 (1135)
|..||..+|+.+..+..+.. .+++++|. |+++.|+.++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 99999999999988887654 78999998 88887776553
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=2.7e-10 Score=126.30 Aligned_cols=271 Identities=10% Similarity=0.013 Sum_probs=173.7
Q ss_pred CCeeEEEEecCCCeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 347 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
..+..++++|+|+ ++++.. .++.+.||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2343667766544322 111111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEeCCCCceeeeeEee----cccCCEEEEEEecCCCeEEEEEEc---CCCcEEEEEcCCCeeeee
Q 001159 425 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 425 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~v~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 492 (1135)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987644422 221 12235689999987653 455655 688999999999988777
Q ss_pred ecCCCCCee-EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 493 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 493 ~~~h~~~v~-~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++|+||++.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765532211 122333 346677777888877663 135789999999999887541 335655
Q ss_pred EECC---CCe-----EEE--EeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEc
Q 001159 572 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1135)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 641 (1135)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ ....+.+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1112222 3456899999998888888999999999566643333321 23357899999
Q ss_pred CCCCEEEEEECCC
Q 001159 642 KEGSLLAVTTSDN 654 (1135)
Q Consensus 642 ~~~~~l~~~~~dg 654 (1135)
+++.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9988777766543
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=3.6e-09 Score=114.62 Aligned_cols=230 Identities=11% Similarity=0.005 Sum_probs=156.5
Q ss_pred CCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 407 h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+....-+..|+|++. ++++...++.|..||..++.. . .+ .....+.+++++++|+ ++++. ++.|.+||..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~---~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q---RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E---EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E---EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 334466889999655 556666788999999987653 1 22 2456799999999998 55543 5689999998
Q ss_pred CCeeeeeecC----CCCCeeEEEeeccCCccEEEEEEcC---------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCC
Q 001159 486 AGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1135)
Q Consensus 486 ~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 552 (1135)
+++....... ....++.++++|++ .+.++...+ ..-.+|.++.......+.........++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 8875432221 12347788887754 655544321 33455555543333333333345688999999
Q ss_pred CCEEEEEecCCCCCCeEEEEEC--CCCeEE-----EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001159 553 GTRLFSCGTSKEGESHLVEWNE--SEGAIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1135)
++.|+.+.. ..+.|.+|++ .+|... ..+..... ....++++++|+..++....+.|.+||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876643 3678999987 455432 22222222 577899999998888877888999999999999988
Q ss_pred EeCCCCCCCcceEEEc-CCCCEEEEEECC
Q 001159 626 VDADGGLPASPRLRFN-KEGSLLAVTTSD 653 (1135)
Q Consensus 626 ~~~~~~~~~v~~~~~~-~~~~~l~~~~~d 653 (1135)
+..+.. .+++++|. |+++.|.+++..
T Consensus 236 i~~p~~--~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLPVD--KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECSSS--BEEEEEEESGGGCEEEEEEBC
T ss_pred EECCCC--CceEEEEeCCCCCEEEEEcCC
Confidence 876533 68999998 888877766653
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=1.4e-10 Score=127.38 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=134.3
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCcc-----------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 909 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~i 909 (1135)
...+..+++++...++++|+...+.+|++++.. ..... .+.. |++|+| ++.+|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 456889999999999999997788889976543 11223 3555 999999 56888888 8899999
Q ss_pred EEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcE
Q 001159 910 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 989 (1135)
Q Consensus 910 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 989 (1135)
||+.+.........|..++.++.+.+.. +++++.||.|.+||++.+.... +. ..|++++|||+| .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-L 175 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-E
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-e
Confidence 9998766556677788889998887653 8889999999999999876421 11 468999999999 4
Q ss_pred EEEEecCeEEEEecCCce---eeccCC------CCCCCCCEEEEEEeeCCCEEEE
Q 001159 990 LLVVHESQISVYDSKLEC---SRSWSP------KDALPAPISSAIYSCDGLLVYA 1035 (1135)
Q Consensus 990 l~~~~d~~v~vwd~~~~~---~~~~~~------~~~h~~~i~~~~~s~d~~~l~~ 1035 (1135)
.+...||.+++|+..+.. ...+.. +.+|...|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 444789999999984444 333421 1246789999999999999886
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=2.1e-10 Score=126.02 Aligned_cols=183 Identities=9% Similarity=0.071 Sum_probs=135.2
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.++.+++++... ++++|+.+ .+.+|++..........- ..+.......+.. |++++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~---------~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDS---------TPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSS---------CCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhcccc---------ccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 699999999998 67778776 555699765431110000 0000001223556 999999 99999999
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.|++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998865433 45567888988887754 27788899999999999887653 456899999998
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCc--eeEe------c---CCCCcEEEEEEcCCCCEEEEEe
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.+ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 64 68899999999998877664 4444 2 3678999999999999988654
No 222
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.22 E-value=3.4e-06 Score=99.99 Aligned_cols=522 Identities=10% Similarity=0.006 Sum_probs=269.3
Q ss_pred CCCeEEEEEeCCCC-ceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-eeeecCCCCCeeEEEe
Q 001159 428 SKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~-~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~i~~ 505 (1135)
....|+..++.... ... .+...-..+..++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 12223445789999997774 445555678899999765432 2233333356888999
Q ss_pred eccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
.+.. +.+.++-...+.|.+.+++...........-.....+++.|.+.+|+.... .....|...++. |.....+..
T Consensus 92 D~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~d-G~~~~~l~~ 167 (619)
T 3s94_A 92 DWLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMD-GSSRFIIIN 167 (619)
T ss_dssp ETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETT-SCSCEEEEC
T ss_pred EecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECC-CCceEEEEe
Confidence 8753 256666667899999998865544444344456778999998777765532 124567777765 333333322
Q ss_pred ccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 664 (1135)
..-.....++++++++.|+.+. ..+.|...+++........... .....++++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2222567899999877776654 5678999998764443333211 123467788765 44444445778888888777
Q ss_pred chhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc-ccCCCC---ccccc-ccc
Q 001159 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL-GTIDGS---RLVDV-KPR 739 (1135)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~-~~~ 739 (1135)
.. ...+........ .+. .+.+..... ....... .+++.. ..+.. .+-
T Consensus 245 ~~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~---~~n~C~~~ng~Cs~lCl~~~~~~~~~ 296 (619)
T 3s94_A 245 EG-LREIHSDIFSPM------------DIH------------AFSQQRQPN---ATNPCGIDNGGCSHLCLMSPVKPFYQ 296 (619)
T ss_dssp CC-CEECCSCCCCCS------------EEE------------ECCGGGSCC---CCCTTTTTGGGCSSEEEECSSTTSEE
T ss_pred cc-cEEEecCCCCCc------------EEE------------EEccccCCC---ccccccCCCCcccceEECCCCCCCce
Confidence 32 222211100000 000 000000000 0000000 000000 00000 000
Q ss_pred cccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccC
Q 001159 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 819 (1135)
Q Consensus 740 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 819 (1135)
..+..+.. +. . ... +|.. ....+|+. +..+.|+..++...
T Consensus 297 C~C~~g~~----l~--------------~----d~~-~C~~--~~~~~Ll~-~~~~~i~~i~l~~~-------------- 336 (619)
T 3s94_A 297 CACPTGVK----LL--------------E----NGK-TCKD--GATELLLL-ARRTDLRRISLDTP-------------- 336 (619)
T ss_dssp EECCTTCC----BC--------------T----TSS-CBCS--SCSEEEEE-EESSCEEEEESSST--------------
T ss_pred EeCCchhe----ec--------------c----cCc-ccCC--CCceEEEE-EcccceEEEecCCC--------------
Confidence 00000000 00 0 000 0000 00111222 22333443333211
Q ss_pred eeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcE
Q 001159 820 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 897 (1135)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 897 (1135)
..........+ -..+.+++|.+.+..|..++ .+.|+.+++........+...-.....+|+.+.++++
T Consensus 337 ------~~~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~l 406 (619)
T 3s94_A 337 ------DFTDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNL 406 (619)
T ss_dssp ------TCCCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred ------ccceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcE
Confidence 00111111122 45578899999777777766 6889999987654433343334567789998745555
Q ss_pred EEEEeCCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEc--CCCcEEEEeCCCCceeceeeeecCCCCCCC
Q 001159 898 IAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 974 (1135)
Q Consensus 898 lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 974 (1135)
..+-+..+.|.+.++.... ...+ ...-....+|++.|....|..+. ....|...+++..... ..... .
T Consensus 407 Y~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~~---~--- 477 (619)
T 3s94_A 407 YWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVNT---S--- 477 (619)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEECS---S---
T ss_pred EEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEeC---C---
Confidence 5555567899999987543 3333 33345689999999744444443 2356766676653321 11111 1
Q ss_pred CCCceEEEECCCCcEEEEE--ecCeEEEEecCCceeeccC-CCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCce
Q 001159 975 LVGETKVQFHNDQTHLLVV--HESQISVYDSKLECSRSWS-PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 975 ~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~~~~~~~-~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
......++++++++.|..+ ..+.|..+++.+.....+. ....|. .++++..+ .++++-...+.|...+..+|.
T Consensus 478 l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P---~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 478 LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHI---FGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSS---CCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCc---EEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 1356799999988777775 4577888888554433332 112223 34555443 445555566778888888873
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=5.6e-10 Score=136.54 Aligned_cols=244 Identities=11% Similarity=0.131 Sum_probs=161.3
Q ss_pred CCCcceEEEEEcCCCCeEEEEe-----CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCC---
Q 001159 406 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~--- 477 (1135)
+|...+..++|||||++||.+. .+..|++||+.+++.+.. .+.+. ....++|+ |++ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCC--EEEEEEecCccc
Confidence 4666899999999999999653 235799999999875432 12111 13568999 999 566555553
Q ss_pred ----------cEEEEEcCCCee----eeeecC-CCCCeeEEEeeccCCccEEEEEEc----CCeEEEEeCcCCC-ceeEe
Q 001159 478 ----------MIKVWDVVAGRK----QYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 537 (1135)
Q Consensus 478 ----------~i~iwd~~~~~~----~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~ 537 (1135)
.|++|++.++.. +..... |...+.++.++|++ ++|+.... ++.|++||+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987643 333333 44557788887765 66644332 2589999998764 34455
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeE--EEEeecccCCceeEEEecCCCCEEEEEeC-CC--eE
Q 001159 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 612 (1135)
Q Consensus 538 ~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~-dg--~i 612 (1135)
..+....... ++++|..|+..+......+.|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555544444 6778887776653322357899999988654 345555555 333 78889998887664 43 68
Q ss_pred EEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECC----CcEEEEEcCCC
Q 001159 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (1135)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~ 664 (1135)
++|++..+ ....+.... ...+..+.+++++..++....+ +++..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998854 445554332 2245667778888777666544 78999998776
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.22 E-value=3.3e-09 Score=116.44 Aligned_cols=224 Identities=13% Similarity=0.011 Sum_probs=150.0
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
-..+++|+|+++.+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 356789999877788888888999999998765321 1 123469999999999987765
Q ss_pred CCCeEEEEEeCCCCceeeeeEee-cc-cCCEEEEEEecCCCeEEEEEEcC------CCcEEEEEcCCCeeeeeecCCCCC
Q 001159 428 SKHIVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 499 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~-~h-~~~v~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1135)
.+ .|.+||..+++... ..... +. ...+.+++++|+|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999988765321 11111 11 23589999999998 4444332 24455555 55543 33233345
Q ss_pred eeEEEeeccCCccEE-EEEEcCCeEEEEeCc--CC-Cc-----eeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEE
Q 001159 500 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1135)
Q Consensus 500 v~~i~~~~~~~~~~l-~s~s~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1135)
...++|+|++ +.+ ++.+.++.|.+||++ ++ .. ...+......+..++++++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6788998754 555 444567899999986 43 21 112222345678899999998776653 256799
Q ss_pred EEECCCCeEEEEeecccCCceeEEEec-CCCCEEEEEeC
Q 001159 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1135)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~~~~~ 608 (1135)
+||. +++.+..+..+.. .+.+++|+ ++++.|++++.
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 9998 6777777776554 68999998 88887766543
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=1.2e-09 Score=121.22 Aligned_cols=269 Identities=9% Similarity=0.043 Sum_probs=163.8
Q ss_pred CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc------cCCceeEEEecCCCCEEEEEeC-----CC
Q 001159 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAGD-----EF 610 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~i~~s~~~~~l~~~~~-----dg 610 (1135)
..+..++++++|+.+++.....++..+|...+ +++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 57889999999998887642111112444444 5553 333211 1126889999999876665433 57
Q ss_pred eEEEEECCCCceEEEEeCCCC----CCCcceEEEcCCCCEE-EEEE---CCCcEEEEEcCCCchhhhhccccccccccCC
Q 001159 611 QIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLL-AVTT---SDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 682 (1135)
.|.+||+.+++.+..+..... ...+..+++++++..+ ++.. .++.|.+||..++ +..+.+.+|.....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~--- 169 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAP--- 169 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSC---
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccc---
Confidence 899999999998877764321 1246899999865444 4444 5789999998877 33332222110000
Q ss_pred CCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCcccee
Q 001159 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1135)
Q Consensus 683 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~ 762 (1135)
T Consensus 170 -------------------------------------------------------------------------------- 169 (343)
T 2qe8_A 170 -------------------------------------------------------------------------------- 169 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCC
Q 001159 763 ALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 842 (1135)
Q Consensus 763 ~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 842 (1135)
....+.++|..+.+...+|.++.| ..
T Consensus 170 --------------~~~~~~~~g~~~~~~~~~g~~~~~----------------------------------------~~ 195 (343)
T 2qe8_A 170 --------------EDIDLVIDGVPVQIGQPDGTVIRP----------------------------------------HL 195 (343)
T ss_dssp --------------CSCCCEETTEECBEECTTSCEECC----------------------------------------CC
T ss_pred --------------cccceeECCEEEEeccCCCceece----------------------------------------ec
Confidence 001122344444444445554444 22
Q ss_pred ceEEEEeecCCCEEEEEe-C-CeEEEEECC---Ccc-----EEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001159 843 SAACIALSKNDSYVMSAS-G-GKVSLFNMM---TFK-----VMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 910 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-d-g~i~vwd~~---~~~-----~~~--~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iw 910 (1135)
.+..++++|||+.|+++. . ..+..++.. .+. ... ...++......+++++ +|.++++...++.|.+|
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~ 274 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVI 274 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEE
Confidence 356788899988888776 3 355555432 110 000 1112344567799999 78888888889999999
Q ss_pred EcccceeeEEecC-cCCCeEEEEEcCCCCeEEEEcCCCcEEEE
Q 001159 911 NVRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMW 952 (1135)
Q Consensus 911 d~~~~~~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iw 952 (1135)
|..+++....... +...+++++|.++++++++.+..+.+.+|
T Consensus 275 d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 275 TSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 9856664333322 24568999999999988888765544333
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=4.1e-09 Score=115.71 Aligned_cols=224 Identities=11% Similarity=0.015 Sum_probs=144.8
Q ss_pred EEEEEecCCcce-eEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~dg~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
.+.+|+|++..+ ++...++.|..|+.. ++..... . . ...+.+++++++|++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~--~---~-~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLA----------------------SGRKTVH--A---L-PFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETT----------------------TTEEEEE--E---C-SSCEEEEEEEETTEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECC----------------------CCcEEEE--E---C-CCcceEEEEeCCCeE
Confidence 678899985544 444457778777543 2222111 1 1 456889999999998
Q ss_pred EEEEeCCeEEEEECCCccEEEEEeC----CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEcccceeeEEecCcC
Q 001159 856 VMSASGGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGME------DSSVQIYNVRVDEVKTKLKGHQ 925 (1135)
Q Consensus 856 la~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h~ 925 (1135)
+++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 45599999988876433221 123588999999 7776665432 24555555 55543 333344
Q ss_pred CCeEEEEEcCCCCeEE-EEcCCCcEEEEeCC--CC-ceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEE
Q 001159 926 NRITGLAFSPTLNALV-SSGADAQLCMWSID--KW-EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISV 1000 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~v 1000 (1135)
....+++|+||++.|+ +.+.++.|.+|++. ++ +......+....... ..+..++++++|.++++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 5578999999998664 44567889999986 54 321111121111111 345689999999887775 4688999
Q ss_pred EecCCceeeccCCCCCCCCCEEEEEEe-eCCCEEEEEeCC
Q 001159 1001 YDSKLECSRSWSPKDALPAPISSAIYS-CDGLLVYAGFCD 1039 (1135)
Q Consensus 1001 wd~~~~~~~~~~~~~~h~~~i~~~~~s-~d~~~l~~~~~d 1039 (1135)
|+.+++.+..+... ...+++++|+ +|++.|++++..
T Consensus 256 ~d~~g~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECCCCCEEEEEECC---CCCcEEEEEecCCCCEEEEEecC
Confidence 99976666555432 4569999999 898877655443
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.21 E-value=1.8e-09 Score=117.52 Aligned_cols=230 Identities=11% Similarity=0.038 Sum_probs=155.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
.......+.|+|+|+.+++++..++.|..|+.. ++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 445678899999999888888889999999974 43211 223556789999999999777
Q ss_pred EEeCCCeEEEEEeCCCCceeeeeEeecc-cCCEEEEEEecCCCeEEEEE----EcC-------------CCcEEEEEcCC
Q 001159 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 486 (1135)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~s~d~~~~~l~s----~~~-------------d~~i~iwd~~~ 486 (1135)
+...++.|.+|+.+ ++.........+. ...+.++++.++|. +++| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 66667889999986 4322111111111 13467899999998 6665 332 25677788766
Q ss_pred CeeeeeecCCCCCeeEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
++..... .......++|+|++ ..|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654333 34456789998865 667666654 7899999875431 111122233455788999999544
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCe
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~ 611 (1135)
+. .+.|.+|+. +++.+..+.... .+.+++|+++++.|+.++.++.
T Consensus 255 ~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTEE
T ss_pred ec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeE
Confidence 43 224999998 577777777654 4788999999998888877643
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.20 E-value=2.5e-09 Score=129.52 Aligned_cols=138 Identities=9% Similarity=0.009 Sum_probs=89.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCc----------E-EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW----------C-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|..+|..+++.+..+...... + ..+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA 144 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence 57888888999999999999888776543221 0 11222 3456777653 789999999999999
Q ss_pred EEeecc-cCCceeEEEecC--CCCEEEEEe------CCCeEEEEECCCCceEEEEeCCCC--------------------
Q 001159 581 RTYSGF-RKRSLGVVQFDT--TRNRFLAAG------DEFQIKFWDMDNMNMLTTVDADGG-------------------- 631 (1135)
Q Consensus 581 ~~~~~~-~~~~v~~i~~s~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~-------------------- 631 (1135)
..+... .......+..+| .+..+++++ .+|.|+.||..+|+.+..+.....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 888763 110111111122 133455543 378999999999999887753110
Q ss_pred ---------CCCcceEEEcCCCCEEEEEECCCc
Q 001159 632 ---------LPASPRLRFNKEGSLLAVTTSDNG 655 (1135)
Q Consensus 632 ---------~~~v~~~~~~~~~~~l~~~~~dg~ 655 (1135)
......++++|++.++++++.++.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~ 257 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGS 257 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCC
Confidence 001135788888888888887764
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=3.2e-09 Score=128.21 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=130.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCC----------e-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..|+.++.|+.+..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 5667777899999999999998877643211 1 12222 2268888999999999999999988776
Q ss_pred cCC-C----CcEEE-EEEcCCCCEEEEEecCCC--CCCeEEEEECCCCeEEEEeecccCC--------------------
Q 001159 538 DAP-G----NWCTM-MAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR-------------------- 589 (1135)
Q Consensus 538 ~~~-~----~~i~~-~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~-------------------- 589 (1135)
... . ..+.+ ... .+..+++++...+ .++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 2 11111 111 2345555442111 2688999999999999887653211
Q ss_pred -----------ceeEEEecCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEeCCCCC-------
Q 001159 590 -----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL------- 632 (1135)
Q Consensus 590 -----------~v~~i~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------- 632 (1135)
....++++++++.++.+..++ .|..+|..+++.+..++...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 113578889999999887664 5999999999999888753221
Q ss_pred CCcceEEEcCCC---CEEEEEECCCcEEEEEcCCCc
Q 001159 633 PASPRLRFNKEG---SLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 633 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.....+....+| ..++.++.+|.+.++|..+++
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 112222333467 688999999999999999993
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.6e-09 Score=118.91 Aligned_cols=278 Identities=8% Similarity=-0.051 Sum_probs=177.2
Q ss_pred ccccCCCcceeeEEeec-CCCCeeEEEEecCCCeEEEEEe---------ccceEEEEEcCCccccccCCceeeccccccc
Q 001159 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGT---------NVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1135)
Q Consensus 328 ~~~~~d~~~~~~~~~~~-h~~~V~~v~~sp~g~~lla~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1135)
.+..+|..+.+.+.++. ...+ .+.|||||++++++.+ .++.|.+||+.+++.+.+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v-----~~--- 116 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----PD--- 116 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----TT---
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC-----CC---
Confidence 34456777888888888 4444 8999999997665542 478999999999987654100 00
Q ss_pred chhhhhccCCCcceEEEEEcCCCCeEEEEeC--CCeEEE--EEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE
Q 001159 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFS--KHIVHL--YTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473 (1135)
Q Consensus 398 ~~~~~~~~~h~~~V~~v~~spd~~~las~~~--dg~i~i--wd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~ 473 (1135)
..... .......+++||||++|+++.. +..+.+ +|+.+ +. .+.- .+. +.+.|+++. .+++.
T Consensus 117 --~~~~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~---~i~v-~~~---~~~~p~g~~-~~~~~ 181 (368)
T 1mda_H 117 --APRFS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQ---LTKS-ASC---FHIHPGAAA-THYLG 181 (368)
T ss_dssp --SCSCC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EE---EEEC-SSC---CCCEEEETT-EEECC
T ss_pred --ccccc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ce---EEEC-CCc---eEEccCCCe-EEEEE
Confidence 00000 0123557999999999999874 467888 88876 22 2221 111 234566665 45677
Q ss_pred cCCCcEEEEEcCC-----Ceeee----eecCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee--EecCC--
Q 001159 474 GDDKMIKVWDVVA-----GRKQY----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAP-- 540 (1135)
Q Consensus 474 ~~d~~i~iwd~~~-----~~~~~----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~-- 540 (1135)
+.|+.+.+.|+.+ ++... .+.-...+. . .+.+ ..++..+. +.+.+.|........ .+...
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~ 254 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNES 254 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCT
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEeccc
Confidence 7788888889887 44331 111122333 2 3333 45555555 899999986543221 11111
Q ss_pred -----CC---cEEEEEEcCCCCEEEEEecCCCC-----CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCC-EEEEE
Q 001159 541 -----GN---WCTMMAYSADGTRLFSCGTSKEG-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAA 606 (1135)
Q Consensus 541 -----~~---~i~~~~~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~ 606 (1135)
.. ....++++||++.++++.....+ ...+.++|..+++.+..+.... ....++|++||+ .+++.
T Consensus 255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEE
T ss_pred cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEc
Confidence 10 11126899999998875420001 1235699999999998887654 478899999997 45666
Q ss_pred e-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcC
Q 001159 607 G-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1135)
Q Consensus 607 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 642 (1135)
. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 333 ~~~~~~VsVID~~t~kvv~~I~vg~~---P~~i~~~~ 366 (368)
T 1mda_H 333 SAGTEVLDIYDAASDQDQSSVELDKG---PESLSVQN 366 (368)
T ss_dssp ETTTTEEEEEESSSCEEEEECCCCSC---CCEEECCC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCC---CCEEEeec
Confidence 6 599999999999999999975533 35666554
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=4e-09 Score=119.70 Aligned_cols=273 Identities=16% Similarity=0.108 Sum_probs=172.2
Q ss_pred CCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEe-c-CCCCEEEEEe------------------CCC
Q 001159 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG------------------DEF 610 (1135)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~-s-~~~~~l~~~~------------------~dg 610 (1135)
+||++++.+.. .+..|.+.|+.+.+....+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48999998653 36789999999999888665444446778887 5 9999999985 345
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCC
Q 001159 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1135)
.+.+.|..+.+.+..+...+. ...++++|+|+++++.+.+.. .+ ..+......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se-------~~-~~i~~~~~~---------------- 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSE-------KG-MTLPEMTAA---------------- 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTT-------CC-SSHHHHTCC----------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcc-------cC-cchhhcccc----------------
Confidence 799999999999988875432 367889999999999887532 11 000000000
Q ss_pred cccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcc
Q 001159 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1135)
Q Consensus 691 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 770 (1135)
.-..+.+.+...
T Consensus 229 ----------------------------------------------------~~d~v~V~~~~~---------------- 240 (595)
T 1fwx_A 229 ----------------------------------------------------EMDHIVVFNIAE---------------- 240 (595)
T ss_dssp ----------------------------------------------------SEEEEEEEEHHH----------------
T ss_pred ----------------------------------------------------ccceEEEeeccc----------------
Confidence 001111111110
Q ss_pred cccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEee
Q 001159 771 AASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 850 (1135)
Q Consensus 771 ~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s 850 (1135)
...+.++|++... +.+.+.|....+ +......++. .....++.++
T Consensus 241 -------~~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ipv----g~~PhGv~~s 285 (595)
T 1fwx_A 241 -------IEKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIPI----ANNPHGCNMA 285 (595)
T ss_dssp -------HHHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEEE----ESSCCCEEEC
T ss_pred -------eeEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEec----CCCceEEEEc
Confidence 0011233332222 224554433210 1110001111 3344579999
Q ss_pred cCCCEEEEEe--CCeEEEEECCCcc------------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc--
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-- 914 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-- 914 (1135)
|||+++++++ +++|.++|+.+.+ ....+. -......++|+| +|....+...|++|.+||+.+
T Consensus 286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHH
T ss_pred CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhh
Confidence 9999999987 6899999999763 333332 345688999999 775555667899999999987
Q ss_pred --------ceeeEEecCcCCCe-----EEEEEcCCCCeEEEEcC---CCc----------EEEEeCCCCc
Q 001159 915 --------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSGA---DAQ----------LCMWSIDKWE 958 (1135)
Q Consensus 915 --------~~~~~~l~~h~~~i-----~~l~~s~d~~~l~s~~~---D~~----------i~iwd~~~~~ 958 (1135)
.+.+..+..|-.+- .++.++|||++|+++.. |+. -.++|++.++
T Consensus 364 ~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 364 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45667776654321 23456899999998753 543 2889996655
No 232
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=1.2e-08 Score=110.84 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=154.4
Q ss_pred CCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEc
Q 001159 406 DAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1135)
Q Consensus 406 ~h~~~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 484 (1135)
.........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 3455677899999999 56666678899999884 33 22 3444667799999999998 6666666788999997
Q ss_pred CCCeeeeeecCC-----CCCeeEEEeeccCCccEEEE----EEc-------------CCeEEEEeCcCCCceeEecCCCC
Q 001159 485 VAGRKQYTFEGH-----EAPVYSVCPHHKESIQFIFS----TAI-------------DGKIKAWLYDYLGSRVDYDAPGN 542 (1135)
Q Consensus 485 ~~~~~~~~~~~h-----~~~v~~i~~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~ 542 (1135)
. ++.. .+..+ ...+..+++.++ |.+.++ |.. .+.|..||..+++..... ...
T Consensus 115 ~-g~~~-~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 115 D-GQAH-LLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp T-SCEE-EEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred C-CCEE-EEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 5 5532 22211 134667888764 467765 322 256777776555544332 334
Q ss_pred cEEEEEEcCCCCEEEEEecCC--CCCCeEEEEECCCCeEE--EEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001159 543 WCTMMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1135)
....++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+. .+++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 567899999999888765310 01267999998765421 1221111224556889999984 444444 4999998
Q ss_pred CCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
.++.+..+.... .+.+++|+++++.|..++.++..+
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 477777776543 478999999999888888764333
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=1e-08 Score=124.04 Aligned_cols=201 Identities=11% Similarity=0.086 Sum_probs=127.4
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccC----------CE-EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCe
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----------GV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----------~v-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 488 (1135)
+..+.+++.++.|.-+|..+|+.+-.. ..+.. .+ ..+++ ++. .++.++.|+.|..+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 567777778888999999988765422 11110 01 11222 244 57888899999999999999
Q ss_pred eeeeecCC--CCCeeEEEeecc-CCccEEEEEE------cCCeEEEEeCcCCCceeEecCCC------------------
Q 001159 489 KQYTFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (1135)
Q Consensus 489 ~~~~~~~h--~~~v~~i~~~~~-~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~------------------ 541 (1135)
.+..+... ......+...|. .+ ..++.++ .+|.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98776542 111111111110 02 3444443 37899999999999877654210
Q ss_pred -------------CcEEEEEEcCCCCEEEEEecCCC-----------CC----CeEEEEECCCCeEEEEeecccC-----
Q 001159 542 -------------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK----- 588 (1135)
Q Consensus 542 -------------~~i~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~----- 588 (1135)
.....++++|++..++.+..+.. ++ +.|..+|..+|+.+..+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 00125788898888888764210 01 2499999999999998875311
Q ss_pred ---CceeEEEecCCCC---EEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 589 ---RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 589 ---~~v~~i~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..........+|+ .++.++.+|.++++|..+|+++.....
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 0111122223554 788899999999999999999866543
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.11 E-value=1e-07 Score=107.21 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=100.3
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCC---------CCCeeE-EEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEec
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~-i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 538 (1135)
.++.++.++.|..+|..+|+.+..+... ...+.+ +.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 5777888999999999999988766542 122322 222 22678889999999999999988877665
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCc----eeEEEecCCCCEEEEEeCCCeEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEFQIKF 614 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~i~~s~~~~~l~~~~~dg~i~i 614 (1135)
............ +..+++++. ++.|..+|..+|+.+..+....... ....... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 443221112222 345666543 7789999999999988876543210 0112222 457888888999999
Q ss_pred EECCCCceEEEEeC
Q 001159 615 WDMDNMNMLTTVDA 628 (1135)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1135)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988777654
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.11 E-value=2.5e-09 Score=117.34 Aligned_cols=222 Identities=7% Similarity=-0.089 Sum_probs=144.5
Q ss_pred eEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe----------CCCcEEEEEcccceeeEEecCc-------C
Q 001159 863 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKLKGH-------Q 925 (1135)
Q Consensus 863 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~h-------~ 925 (1135)
+|.++|..+++.+.++.....+ .++|+| |+++++++. .++.|.+||+.+++.+.++..+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8999999999999999765555 799999 788887776 3789999999999999888643 1
Q ss_pred CCeEEEEEcCCCCeEEEEcC--CCcEEE--EeCCCCceeceeeeecCCC-CCCCCCCceEEEE-----------------
Q 001159 926 NRITGLAFSPTLNALVSSGA--DAQLCM--WSIDKWEKLKSRFIQAPAG-RQSPLVGETKVQF----------------- 983 (1135)
Q Consensus 926 ~~i~~l~~s~d~~~l~s~~~--D~~i~i--wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~----------------- 983 (1135)
.....++|||||++|+.+.. +..+.+ +|..+ ... +..... +......-..+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~--i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL--TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE--EECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE--EECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34668999999999998864 456888 99876 111 111000 0000000011122
Q ss_pred --------------------CCCCcE-EEEEecCeEEEEecCCc---eeeccCCCC------C-CCCCEEEEEEeeCCCE
Q 001159 984 --------------------HNDQTH-LLVVHESQISVYDSKLE---CSRSWSPKD------A-LPAPISSAIYSCDGLL 1032 (1135)
Q Consensus 984 --------------------s~dg~~-l~~~~d~~v~vwd~~~~---~~~~~~~~~------~-h~~~i~~~~~s~d~~~ 1032 (1135)
++++.. ++++. +.|.+.|.... .+..+.... + +......++|++|+++
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 223332 33344 66777776321 222221110 0 0111112689999998
Q ss_pred EEEEeC-C--------CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCC-EEEEEe-cCCcEEEEecC
Q 001159 1033 VYAGFC-D--------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPS 1101 (1135)
Q Consensus 1033 l~~~~~-d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~dg~v~~W~~~ 1101 (1135)
++++.. + +.+.++|+.+++.+.++... ..+.++.++| ||+ ++++.. .+++|.++|+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-----------~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-----------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-----------CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 887643 2 35679999999999887644 2456899999 555 667777 59999999999
Q ss_pred CCcc
Q 001159 1102 DAEL 1105 (1135)
Q Consensus 1102 ~~~~ 1105 (1135)
+.+.
T Consensus 346 t~kv 349 (368)
T 1mda_H 346 SDQD 349 (368)
T ss_dssp SCEE
T ss_pred CCcE
Confidence 9873
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=2.8e-08 Score=120.04 Aligned_cols=279 Identities=9% Similarity=0.030 Sum_probs=177.0
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+++++.++.|.-+|..+|+.+ |................+. ....+++ ++..|++++.|+.|..+|..+|+
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~-------W~~~~~~~~~~~~~~~~~~-~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRI-------WTYDPQIDRSTGFKGCCDV-VNRGVAL--WKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEE-------EEECCCCCGGGGGGSSSCS-CCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEECCCCeEEEEECCCCcEE-------EEEcCCCCccccccccccC-CCCCceE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 455667889999999999875 3222111000000000000 0011222 56788888999999999999998
Q ss_pred ceeeeeEeecc-c----CCEEEEEEecCCCeEEEEEEc------CCCcEEEEEcCCCeeeeeecCCCCC-----------
Q 001159 442 ELRQHLEIDAH-V----GGVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEGHEAP----------- 499 (1135)
Q Consensus 442 ~~~~~~~l~~h-~----~~v~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~----------- 499 (1135)
.+-. +..+ . ..+.+.-...++ .++.++ .++.|+.+|..+|+.+.++......
T Consensus 150 ~~W~---~~~~~~~~~~~~~~~~p~v~~~---~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 150 EVWH---QNTFEGQKGSLTITGAPRVFKG---KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp EEEE---EETTTTCCSSCBCCSCCEEETT---EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred EEee---ecCCcCcCcCcccccCcEEECC---EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 6543 2222 1 112111111234 344443 2799999999999998777532211
Q ss_pred ---------------------eeEEEeeccCCccEEEEEEcCC-------------------eEEEEeCcCCCceeEecC
Q 001159 500 ---------------------VYSVCPHHKESIQFIFSTAIDG-------------------KIKAWLYDYLGSRVDYDA 539 (1135)
Q Consensus 500 ---------------------v~~i~~~~~~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~ 539 (1135)
...++++|.. ..++.++.++ .|..+|.++++.+..+..
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~--~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAEL--NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE 301 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred cccccccccCceeEeCCCcccccceeEcCCC--CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec
Confidence 1245566654 6777777664 599999999988876554
Q ss_pred CCC---------cEEEEEEcCCC---CEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCC----------ce------
Q 001159 540 PGN---------WCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------SL------ 591 (1135)
Q Consensus 540 ~~~---------~i~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------~v------ 591 (1135)
... ....+....+| ..++.+. .++.++++|..+|+.+..+...... .+
T Consensus 302 ~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 302 TPGDNWDYTSTQPMILADIKIAGKPRKVILHAP----KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp STTCCSCCCCCSCCEEEEEEETTEEEEEEEECC----TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred CCCcccccccCCCcEEEecccCCcEeeEEEEEC----CCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 211 12223333467 4566654 4889999999999998776532110 01
Q ss_pred ------------------eEEEecCCCCEEEEEeC-------------------------------------------CC
Q 001159 592 ------------------GVVQFDTTRNRFLAAGD-------------------------------------------EF 610 (1135)
Q Consensus 592 ------------------~~i~~s~~~~~l~~~~~-------------------------------------------dg 610 (1135)
..++++|++..+++... .|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 14678999888887543 27
Q ss_pred eEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCc
Q 001159 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.|..||+.+++.+..+.... .+....+..++.++++++.||.+++||..+++
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCCCcEEeecCCCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 89999999999988886532 34555667778889999999999999999993
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.05 E-value=2.7e-08 Score=108.85 Aligned_cols=238 Identities=12% Similarity=0.087 Sum_probs=147.7
Q ss_pred cCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-
Q 001159 783 NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 860 (1135)
Q Consensus 783 ~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~- 860 (1135)
.++++|++.+. ++.|.++|+.+....+.-..+- + ..++.. -.+ ......+..+||| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i-------e--~~~~~~--~~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI-------E--PEEVKK--VSG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE-------C--HHHHHH--HHC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee-------c--hhhccc--ccC----CCcccceeECCCe-EEEEcCC
Confidence 67777776655 7889999876433222111000 0 000000 000 2234567888999 555543
Q ss_pred C------CeEEEEECCCccEEEEEeCCCC---CeEEEEEecCCCcEEEEEe-------------------CCCcEEEEEc
Q 001159 861 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 912 (1135)
Q Consensus 861 d------g~i~vwd~~~~~~~~~~~~h~~---~v~~l~~sp~~~~~lasg~-------------------~dg~v~iwd~ 912 (1135)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999863222 133578899 888888774 3689999999
Q ss_pred ccceeeEEecCc--CCCeEEEEE--cCCCCeEEEEc------CCCcEEEEeCCCCceeceeeeecCC----CCCC-----
Q 001159 913 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPA----GRQS----- 973 (1135)
Q Consensus 913 ~~~~~~~~l~~h--~~~i~~l~~--s~d~~~l~s~~------~D~~i~iwd~~~~~~~~~~~~~~~~----~~~~----- 973 (1135)
.+++.+.++..- ......|.| +|+++++..++ .+++|.+|..+.++-.....+.... +...
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 234556666 99999887776 4568887766554321111111110 0000
Q ss_pred ---CCCCceEEEECCCCcEEEEE--ecCeEEEEec-C---CceeeccCCCCC-----C------CCCEEEEEEeeCCCEE
Q 001159 974 ---PLVGETKVQFHNDQTHLLVV--HESQISVYDS-K---LECSRSWSPKDA-----L------PAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 974 ---~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~-~---~~~~~~~~~~~~-----h------~~~i~~~~~s~d~~~l 1033 (1135)
.......+.+|+||++|.++ ..+.|.+||+ . .+.+..+..... | ...-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 01346889999999999996 4689999998 2 233333322100 0 1124678999999999
Q ss_pred EEEe
Q 001159 1034 YAGF 1037 (1135)
Q Consensus 1034 ~~~~ 1037 (1135)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=2.5e-09 Score=118.18 Aligned_cols=295 Identities=10% Similarity=-0.015 Sum_probs=180.9
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCce
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1135)
..+..++.++.|..|| .+++...........+.++...+++... .++ .+ |..+|. +++.+..+..... ..
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t-----~~-l~~~d~-~g~~~~~~~~~~~-~~ 100 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGS-----DK-VYAINP-DGTEKWRFDTKKA-IV 100 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSS-----CE-EEEECC-CGGGGGGSCC------
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-Eec-----Cc-EEEECC-CCcEEEEEECCCC-cc
Confidence 4577777888899999 7666655544444456777777777544 443 23 888886 6665544433222 22
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhc
Q 001159 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1135)
Q Consensus 592 ~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 671 (1135)
....+. +..++.++.++.|..+|.. ++.......... .+.++...+++. +..++.++.+..+|.. +. ....+
T Consensus 101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-~~~~~ 172 (330)
T 3hxj_A 101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA--IYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-EKWRF 172 (330)
T ss_dssp CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSC--CCSCCEECTTSC-EEEECTTSEEEEECTT-SC-EEEEE
T ss_pred cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-EeEEE
Confidence 223333 5678888889999999998 777766654432 466777777776 5557778899999876 52 11111
Q ss_pred cccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccc
Q 001159 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1135)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~ 751 (1135)
...
T Consensus 173 ~~~----------------------------------------------------------------------------- 175 (330)
T 3hxj_A 173 KTN----------------------------------------------------------------------------- 175 (330)
T ss_dssp ECS-----------------------------------------------------------------------------
T ss_pred ecC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred cCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCccee
Q 001159 752 IPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 831 (1135)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1135)
...+ .++.+.++|. +.+++ +.+..++ . ++....
T Consensus 176 --------------------~~~~-~~~~~d~~g~-l~v~t--~~l~~~d-~----------------------~g~~~~ 208 (330)
T 3hxj_A 176 --------------------DAIT-SAASIGKDGT-IYFGS--DKVYAIN-P----------------------DGTEKW 208 (330)
T ss_dssp --------------------SCCC-SCCEECTTCC-EEEES--SSEEEEC-T----------------------TSCEEE
T ss_pred --------------------CCce-eeeEEcCCCE-EEEEe--CEEEEEC-C----------------------CCcEEE
Confidence 0001 2333444554 33333 4455543 1 111111
Q ss_pred ccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 832 NDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 832 ~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
.... . ...+.+++++++|.+.+...++.|..+|. +++.+..+......+.++.+.+ ++ .|..++.+|.|..+|
T Consensus 209 ~~~~---~-~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 209 NFYA---G-YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp EECC---S-SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred EEcc---C-CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence 1111 1 34567788888887666555788888874 5666666665555555666765 45 466688888899999
Q ss_pred cccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCC
Q 001159 912 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 957 (1135)
Q Consensus 912 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~ 957 (1135)
. +++.+..+......+.++...++|.+ ..++.+|.+.+...+..
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred C-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 6 67777776655667888888788865 45788999998876653
No 239
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.02 E-value=3.8e-05 Score=91.02 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=119.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la 424 (1135)
.-..+.+++|++.+..++.+-...+.|..++++....... ++...-.....+++.+.+..|.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly 99 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLY 99 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEE
Confidence 3456889999997776776666678898888875421110 0122224688999999666555
Q ss_pred EE-eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEE-cCCCcEEEEEcCCCeeeeee-cCCCCCee
Q 001159 425 VA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVY 501 (1135)
Q Consensus 425 s~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 501 (1135)
.+ ...+.|.+.++++..... .+...-.....|++.|.+.. +++|- +..+.|...++. |.....+ ...-...+
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 54 567899999988643211 12233345678999998664 33333 334677777754 3333333 22334578
Q ss_pred EEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 502 ~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
.+++.+.. +.+.++-...+.|...|++.................+++..+ .|+.+.. ..+.|...|..+|+..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 89998754 244455556678888888754333322222223346676554 5555432 3667888888776543
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.02 E-value=2e-07 Score=104.79 Aligned_cols=256 Identities=11% Similarity=0.071 Sum_probs=163.2
Q ss_pred EEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCC
Q 001159 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1135)
Q Consensus 362 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~ 441 (1135)
+.+++.++.|..+|..+|+.+-+ ..... .....++ . .+..+++++.++.|..+|..+++
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~-------~~~~~--------~~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQ-------TKVAG--------EALSRPV----V--SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE-------EECSS--------CCCSCCE----E--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEE-------EeCCC--------ceEcCCE----E--ECCEEEEEcCCCeEEEEECCCCc
Confidence 55677899999999999976532 11100 0011111 1 24578888899999999999887
Q ss_pred ceeeeeEeecccCCE------EEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCC----ee---EEEeecc
Q 001159 442 ELRQHLEIDAHVGGV------NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----VY---SVCPHHK 508 (1135)
Q Consensus 442 ~~~~~~~l~~h~~~v------~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~---~i~~~~~ 508 (1135)
.+... .... .+ ...... + . .++.++.++.|..+|..+|+.+......... +. .+...|.
T Consensus 165 ~~W~~---~~~~-~~~~~~~~~~~~~~-~-~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~ 236 (376)
T 3q7m_A 165 VKWTV---NLDM-PSLSLRGESAPTTA-F-G--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV 236 (376)
T ss_dssp EEEEE---ECCC------CCCCCCEEE-T-T--EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE
T ss_pred EEEEE---eCCC-CceeecCCCCcEEE-C-C--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE
Confidence 65422 1111 11 112222 3 3 5777888999999999999988766532110 00 0111111
Q ss_pred CCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC
Q 001159 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1135)
Q Consensus 509 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1135)
-.+..++.++.++.+..+|..+++........ ....+.. ++..++.+.. ++.|..+|..+|+.+........
T Consensus 237 ~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~~ 308 (376)
T 3q7m_A 237 VVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLLH 308 (376)
T ss_dssp EETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTTT
T ss_pred EECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccCC
Confidence 12257888889999999999988877665432 2334433 3556666653 67899999999999887763222
Q ss_pred CceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEE
Q 001159 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILA 660 (1135)
Q Consensus 589 ~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd 660 (1135)
..+...... +..+++++.+|.|+++|..+++.+........ .+. .... .+..|++++.+|.|..|+
T Consensus 309 ~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~--~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 309 RLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS--GFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTT--CBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--cceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 123333332 57889999999999999999999888775322 222 2222 245788899999999886
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.00 E-value=4.2e-10 Score=125.68 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=113.3
Q ss_pred CCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCC
Q 001159 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1135)
Q Consensus 419 d~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1135)
++..+++++.||.|+.||..+|+.+. .+.. +.+.+..+..++. .+++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67889999999999999999998665 3333 4455555667776 677888999999999999988777654321
Q ss_pred CeeEEEeeccC-CccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 499 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 499 ~v~~i~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
... ..+|.- .+..+++++.|+.++.||..+++.+..+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 111111 23578889999999999999988877665543 2345668888888764 788999999999
Q ss_pred eEEEEeecccCCceeEEEecCCC---CEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
+.+..+.... .....++.+. ..+++++.||.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9877665321 1223344432 5677888999999999999998887764
No 242
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.97 E-value=0.00045 Score=87.48 Aligned_cols=576 Identities=9% Similarity=0.050 Sum_probs=281.0
Q ss_pred eEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC----CCeEEE
Q 001159 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 425 (1135)
Q Consensus 350 ~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd----~~~las 425 (1135)
.++++-.+| +++.|+..|.=.+|.+.....-....+.+-+ .+ ..-++|.+++.... ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 566666666 5778888888888887654221000000000 01 23467777776432 234554
Q ss_pred Ee---CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEec---CCCeEEEEEEcCCCcEEEEEcCCCeeeeee--cCCC
Q 001159 426 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHE 497 (1135)
Q Consensus 426 ~~---~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~ 497 (1135)
++ .+|.+++..-.-+-.......+.+ ...++.+.... ... +|+....+.+ .|+.+.. ..+... .+-.
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNG-EEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEET-TEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeC-Cccccccccccc
Confidence 43 467888875433221111112332 24566665432 233 5666665655 4555422 222222 1111
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC-CcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1135)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+.+..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111222111111 2232222 2346666665444444554433 3566666543 4555553 35677777766
Q ss_pred CeEEEEeecccCCceeEEEecCC------CCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCcceEEEc--CCCCEE
Q 001159 577 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN--KEGSLL 647 (1135)
Q Consensus 577 ~~~~~~~~~~~~~~v~~i~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l 647 (1135)
+++....+..-...|.|+++.+. +.+++.|.. |++|+|+++.+.+.+........ ....++.+. ....+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 65433222222337999998863 368888886 99999999998877766554321 123444433 234578
Q ss_pred EEEECCCcEEEEEcC--CCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc
Q 001159 648 AVTTSDNGIKILANS--DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
..|-.||.+.-+.+. ++ .+... . ....|.. |.. +..+
T Consensus 621 ~igl~dG~l~~~~~d~~tg-~l~d~----r-----------------~~~LG~~------------------pv~-L~~~ 659 (1158)
T 3ei3_A 621 LCALGDGALFYFGLNIETG-LLSDR----K-----------------KVTLGTQ------------------PTV-LRTF 659 (1158)
T ss_dssp EEEETTSEEEEEEECTTTC-CEEEE----E-----------------EEECCSS------------------CCE-EEEE
T ss_pred EEEeCCCeEEEEEEcCCCC-ccccc----e-----------------eEEcCCC------------------ceE-EEEE
Confidence 889999998766553 22 11100 0 0000100 000 0000
Q ss_pred ccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCC--cceeEecccceeeeEEec
Q 001159 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSG--LSLLALASNAVHKLWKWQ 803 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg--~~l~~~~~dg~i~iw~~~ 803 (1135)
.. .+...+.+.++....++.... ......+.. ..+.....|+... .-++..+ ++.++|..+.
T Consensus 660 ~~------~~~~~V~a~s~rp~liy~~~~-----~l~~s~l~~----~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~ 723 (1158)
T 3ei3_A 660 RS------LSTTNVFACSDRPTVIYSSNH-----KLVFSNVNL----KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTID 723 (1158)
T ss_dssp ES------SSCEEEEEESSSCEEEEESSS-----SEEEEEBSS----SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEEC
T ss_pred ee------CCceeEEEECCCCEEEEEcCC-----ceEEeccCh----HHhceEeccCcccCCCcEEEEc-CCceEEEEec
Confidence 00 000111111121111111110 011101100 0110222343221 1133333 4457776653
Q ss_pred cccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEe-----------------------
Q 001159 804 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----------------------- 860 (1135)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~----------------------- 860 (1135)
... ......++- ...+..++++|+.+.++++.
T Consensus 724 ~~~---------------------~~~~~~ipL----~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1158)
T 3ei3_A 724 EIQ---------------------KLHIRTVPL----YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 778 (1158)
T ss_dssp CSS---------------------SEEEEEEEC----SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHC
T ss_pred ccC---------------------CeeEEEEeC----CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhh
Confidence 210 000000111 33445555555544333221
Q ss_pred ---------------------------CCeEEEEECCCccEEEEEeCC-CCCeEEEEE---ecCCCcEEEEEe-------
Q 001159 861 ---------------------------GGKVSLFNMMTFKVMTMFMSP-PPAATFLAF---HPQDNNIIAIGM------- 902 (1135)
Q Consensus 861 ---------------------------dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~---sp~~~~~lasg~------- 902 (1135)
.+.|++.|..+++.+..+.-. ...+.+++. ..+...+|++|+
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 134788888888877766533 334555553 332357898887
Q ss_pred ---CCCcEEEEEcccceeeEEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCc
Q 001159 903 ---EDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE 978 (1135)
Q Consensus 903 ---~dg~v~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 978 (1135)
..|.|++|++..+++.... ....++|++|+-- +|++||.. ..+|++|++...+.+...+ . .. ..+
T Consensus 859 ~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~-~~------~~i 927 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-N-HY------NNI 927 (1158)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-E-EC------CCS
T ss_pred CCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-e-cc------ccE
Confidence 3488999999755432221 1346789998754 45555544 4689999998765333111 1 01 112
Q ss_pred eEEEECCCCcEEEEEe-cCeEEEE--ecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 979 TKVQFHNDQTHLLVVH-ESQISVY--DSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~~~-d~~v~vw--d~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
..+.....+.+++++. -..|.++ +.....+..+. .+.+...++++.|-.++ .++.+..+|.|.+...+.
T Consensus 928 ~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 928 MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 3333334567777763 3445554 44333333322 23446789999997665 566689999999998765
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.96 E-value=6.5e-08 Score=109.87 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=161.6
Q ss_pred cCCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEE-e-cCCCcEEEEEe------------------CCCcE
Q 001159 851 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAF-H-PQDNNIIAIGM------------------EDSSV 907 (1135)
Q Consensus 851 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~-s-p~~~~~lasg~------------------~dg~v 907 (1135)
+||+++.+.. ++.|.+.|+.+.++...+.-. ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999999887 578999999999988866533 356889998 5 8 788888774 34689
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC--------------------------------------cE
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA--------------------------------------QL 949 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~--------------------------------------~i 949 (1135)
.+.|..+.+.+..+.--. ....++++|||+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888776322 457789999999999888553 36
Q ss_pred EEEeCCC--CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecC-Cc------------eeeccC
Q 001159 950 CMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSK-LE------------CSRSWS 1012 (1135)
Q Consensus 950 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~-~~------------~~~~~~ 1012 (1135)
.+.|..+ ++.. ...+... ....++.++|||++++++ .+.+|.++|+. .+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 6666666 2210 1112221 234689999999999996 57899999994 32 222222
Q ss_pred CCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC----------ceeeeeeCCceeccccccCCCCccEEEEecCCC
Q 001159 1013 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1013 ~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1135)
. ......++|++||...++.-.|+.|.+||+++ ...+.++..+. .|.+ .....+...+| |
T Consensus 329 v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpGh----~~~~~g~t~~~-D 398 (595)
T 1fwx_A 329 L----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGH----LKTVMGETLDA-T 398 (595)
T ss_dssp C----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEE----EEETTTTSTTC-C
T ss_pred C----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cccc----ceeccceEeCC-C
Confidence 2 45678999999995455667899999999987 45566665442 1111 01112234456 8
Q ss_pred CCEEEEEecCC--cE-----------EEEecCCCc
Q 001159 1083 PNQIALGMSDG--AV-----------HVVEPSDAE 1104 (1135)
Q Consensus 1083 ~~~l~sg~~dg--~v-----------~~W~~~~~~ 1104 (1135)
|++|+++..-. .+ .++|++.++
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 89998866532 23 889997766
No 244
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=1.6e-07 Score=102.78 Aligned_cols=239 Identities=14% Similarity=0.138 Sum_probs=151.4
Q ss_pred EEe--cCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCC-CcceEEEEEcCCCCeEEEEeCC
Q 001159 353 DFH--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGPDGLMLGVAFSK 429 (1135)
Q Consensus 353 ~~s--p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~spd~~~las~~~d 429 (1135)
.++ ++++++++.|-.++.|.|+|+.+....- ++-+. ..+..+.... ...-..+..+|+| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p----~~~k~-----ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP----KIIKV-----IEPEEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC----EEEEE-----ECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc----eeeee-----echhhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 337 8999888889899999999987441100 00000 0001111111 1245567889999 66666554
Q ss_pred ------CeEEEEEeCCCCceeeeeEeeccc-CCEEEEEEecCCCeEEEEEEc-------------------CCCcEEEEE
Q 001159 430 ------HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWD 483 (1135)
Q Consensus 430 ------g~i~iwd~~~~~~~~~~~~l~~h~-~~v~~v~~s~d~~~~~l~s~~-------------------~d~~i~iwd 483 (1135)
|.|.++|..+.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 789999999987665332 11222 2234588899999 677764 478999999
Q ss_pred cCCCeeeeeecCC-C-CCeeEEEeeccCCccEEEEEE------cCCeEEEEeCcCCCce--eEe--cCC-----------
Q 001159 484 VVAGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSR--VDY--DAP----------- 540 (1135)
Q Consensus 484 ~~~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~--~~~--~~~----------- 540 (1135)
+.+++.+.++... . .....+.|..++++.+++.++ .+++|.+|..+.+... ..+ ...
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 9999888887643 1 233455553333446766665 5678888766542211 111 100
Q ss_pred -----CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC---CCeEEEEeecccC---------C----ceeEEEecCC
Q 001159 541 -----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES---EGAIKRTYSGFRK---------R----SLGVVQFDTT 599 (1135)
Q Consensus 541 -----~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~---------~----~v~~i~~s~~ 599 (1135)
......+.+|+||++|+++.. +.+.|.++|+. +.+.+..+..... . .-..+.++||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 235678999999999998764 56789999985 3455555543210 0 2466899999
Q ss_pred CCEEEEEe
Q 001159 600 RNRFLAAG 607 (1135)
Q Consensus 600 ~~~l~~~~ 607 (1135)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999886
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.94 E-value=4.7e-08 Score=107.77 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=171.5
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
..+.++...++|. ++ .|+.+ |..+|. +++.+... ...........+. +..|.++
T Consensus 60 ~~~~~~~~~~~g~-l~-v~t~~--l~~~d~-~g~~~~~~-------------------~~~~~~~~~~~~~--~~~l~v~ 113 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IY-FGSDK--VYAINP-DGTEKWRF-------------------DTKKAIVSDFTIF--EDILYVT 113 (330)
T ss_dssp EEEECCEETTTTE-EC-CSSCE--EEEECC-CGGGGGGS-------------------CC-----CCEEEE--TTEEEEE
T ss_pred CcccceEEecCCc-EE-EecCc--EEEECC-CCcEEEEE-------------------ECCCCcccCceEE--CCEEEEE
Confidence 3457777778885 44 35544 888886 55543221 1111112222232 5567778
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
+.++.|..+|.. ++... ....+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...
T Consensus 114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 888999999988 55433 3333444566677777776 5667778999999988 88777766555566666654
Q ss_pred ccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecc
Q 001159 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1135)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1135)
+ ++. +..++ +.+..+| .+++...........+.++...++|...+... ++.|..+| .++..+..+...
T Consensus 186 ~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~-~~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 K--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAIN-PDGTEKWRFKTG 253 (330)
T ss_dssp T--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEEC-TTSCEEEEEECS
T ss_pred C--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEEC-CCCCEeEEeeCC
Confidence 3 334 44555 8889999 66666666665556678888888886655432 56688887 466666666644
Q ss_pred cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 587 ~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
.. .+..+.+.+++ .|+.++.+|.|..+|. +++.+..+.... ..+.++...+++. |..++.+|.+.+.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 33 34455565555 5777888889999996 677777766543 2567788878876 55688999999877543
No 246
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.91 E-value=0.00038 Score=82.55 Aligned_cols=490 Identities=9% Similarity=-0.014 Sum_probs=259.0
Q ss_pred eEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE-eCCCeEEEEEeC
Q 001159 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYN 438 (1135)
Q Consensus 360 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~-~~dg~i~iwd~~ 438 (1135)
.|+++ ..+.|+.-++.+....... ....-..+..|+|++.+..|..+ ..++.|..++++
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~------------------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAI------------------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEEC------------------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEE------------------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 35554 3568888898765321110 01123457899999976666555 457889999987
Q ss_pred CCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE
Q 001159 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1135)
Q Consensus 439 ~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s 518 (1135)
...... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.|.. ..|+-..
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~--G~lY~tD 141 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE--GFMYWTE 141 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT--TEEEEEE
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC--CeEEEeC
Confidence 643221 22222235678999887765 45566667899999976443222222334456899998864 3444443
Q ss_pred --cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEe
Q 001159 519 --IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1135)
Q Consensus 519 --~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~ 596 (1135)
..+.|...+++........ ........+++++++..|+.+-. +.+.|...|+..... ..+..... ....+++
T Consensus 142 ~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav 215 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQ 215 (628)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEE
T ss_pred CCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEE
Confidence 2567888887755443333 34557889999999888887753 467899999875433 33333222 3456776
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEE-cCCCCEEEEEECCCcEEEEEcCCCchhhhhccccc
Q 001159 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1135)
Q Consensus 597 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 675 (1135)
.. +..+++-...+.|...|..+++....+..... ....+.. ++..+. + .+ ++.. ..+.
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n------------~C~~-~ng~- 274 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WN------------ECAS-SNGH- 274 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CC------------TTTT-TGGG-
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ce------------Eecc-CCCC-
Confidence 64 34444444678898889877776666653221 2233322 221110 0 00 0000 0000
Q ss_pred cccccCCCCCCCCCCcccccC-CCcccc-ccccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccC
Q 001159 676 MDKNRCPSEPISSKPLTINAL-GPASNV-SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIP 753 (1135)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~ 753 (1135)
+...++... |+..-. ..-+.+.++. .. ..+...+++.+....|+...+.
T Consensus 275 ------------C~~~C~~~~~~~~~C~C~~g~~l~~d~----------------~~-C~~~~~~Ll~s~~~~i~~i~l~ 325 (628)
T 4a0p_A 275 ------------CSHLCLAVPVGGFVCGCPAHYSLNADN----------------RT-CSAPTTFLLFSQKSAINRMVID 325 (628)
T ss_dssp ------------CSSEEEEETTTEEEEECSTTCEECTTS----------------SC-EECCSSEEEEEETTEEEEECCC
T ss_pred ------------cchhhhcCCCCCeeEEcCCCcEecccC----------------Cc-CccccceeeeeccceEEEEecc
Confidence 000011000 000000 0000000000 00 0111233444444455444443
Q ss_pred CcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceec
Q 001159 754 DISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTN 832 (1135)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1135)
..... ...++. ..-..+ ..++|.+....|+.... .+.|+.+++..... ..++..
T Consensus 326 ~~~~~----~~~l~~-~~~~~~-~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~ 380 (628)
T 4a0p_A 326 EQQSP----DIILPI-HSLRNV-RAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVS 380 (628)
T ss_dssp TTCCC----CEECCC-TTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC-
T ss_pred cccCc----eEEEEe-hhcCCc-eEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEc
Confidence 21110 011111 122345 78999987666665543 56666654321100 001100
Q ss_pred cCCCCCCCCCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCC--cE
Q 001159 833 DINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SV 907 (1135)
Q Consensus 833 ~~~~~~h~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg--~v 907 (1135)
...+... ...+..+|+...++.|..++ .+.|.+.++. ++....+ .........+++.|..|.++.+-.... .|
T Consensus 381 ~~~~~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I 458 (628)
T 4a0p_A 381 SVPSQNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKI 458 (628)
T ss_dssp --------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEE
T ss_pred ccccccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeE
Confidence 0000001 34678999999888777665 5889999986 4444444 334567899999995555554433222 56
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEE-cCCCcEEEEeCCCCc
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWE 958 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iwd~~~~~ 958 (1135)
...+++...........-...++|++.++++.|..+ +..+.|...+++...
T Consensus 459 ~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 459 ERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 666665333222233334567899999987666655 456789999986543
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.87 E-value=7.4e-06 Score=86.70 Aligned_cols=223 Identities=10% Similarity=0.029 Sum_probs=144.9
Q ss_pred cceEEEEEcCCCCeEEEE-eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC
Q 001159 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 487 (1135)
..+..++|++++..|..+ ..++.|..+++.+..... .+.........+++.+++.. ++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999977666555 457899999998654221 22222346789999998764 4556666789999997643
Q ss_pred eeeeeecCCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
...............++++|.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 3222222222456888998754 34444443 468888887654333222233456789999999888877653
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
+.+.|.++|.........+.+.. ....++.. +..++.+. ..+.|.++|..+++.+..+..... .....+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecCc
Confidence 46789999987654443333322 33456654 45555544 668999999999999888864321 23578888887
Q ss_pred CC
Q 001159 644 GS 645 (1135)
Q Consensus 644 ~~ 645 (1135)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=6.1e-07 Score=108.23 Aligned_cols=191 Identities=11% Similarity=0.077 Sum_probs=126.8
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCC----------e-eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEe
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 537 (1135)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666677889999999999998877543211 0 11122 2257888899999999999999988766
Q ss_pred cCCC----CcEEE-EEEcCCCCEEEEEecCC--CCCCeEEEEECCCCeEEEEeecccC----------------------
Q 001159 538 DAPG----NWCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1135)
Q Consensus 538 ~~~~----~~i~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1135)
.... ..+.+ ..+ .+..++++.... ..++.|+.+|..+|+.+..+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 111 133455543211 1258899999999999988863210
Q ss_pred --------CceeEEEecCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEeCCCCC-------CC
Q 001159 589 --------RSLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------PA 634 (1135)
Q Consensus 589 --------~~v~~i~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1135)
.....++++++...++.++.++ .|..+|..+++.+..++...+. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888998887766 3999999999999888753221 11
Q ss_pred cceEEEcCCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 635 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 635 v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
.....+..+|+ .++.++.+|.+.++|..+++
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 22222333665 68889999999999999994
No 249
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.85 E-value=8.6e-10 Score=123.16 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCC
Q 001159 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 973 (1135)
Q Consensus 894 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 973 (1135)
++..|++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++.+-.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~----- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP----- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-----
Confidence 456888999999999999999999988876 5666666777888888889999999999988875322111100
Q ss_pred CCCCc-eEEEECCCCcEEEE-EecCeEEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 974 PLVGE-TKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 974 ~~~~v-~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
..+ ...++..++ .+++ +.++.|+.||. +++.+..+... . ...++|++..+++++.|+.|+.||..+|
T Consensus 81 --~~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 --ELVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp --HHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSS
T ss_pred --cccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 000 011112333 4455 67899999999 67776554332 1 2456678889999999999999999999
Q ss_pred eeeeeeCCceeccccccCCCCccEEEEecCC--CCCEEEEEecCCcEEEEecCCCccccCCC
Q 001159 1051 RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS--EPNQIALGMSDGAVHVVEPSDAELKWGGT 1110 (1135)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~v~~W~~~~~~~~~~~~ 1110 (1135)
+.+-++..... . ...+.++ -...+++++.||.|+.||..+++..|...
T Consensus 151 ~~~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 151 ELRWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SCCCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CEEEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 87765542211 0 0111110 01467778999999999999999888643
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.81 E-value=1.5e-06 Score=104.74 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=72.8
Q ss_pred cEEEEEEcCCeEEEEeCcCCCceeEecCCCCc----------E-EEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEE
Q 001159 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW----------C-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1135)
Q Consensus 512 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1135)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 57888888999999999998888776543221 0 11222 2456666653 789999999999999
Q ss_pred EEeecccCCceeEEEecC--CCCEEEEEeC------CCeEEEEECCCCceEEEEeC
Q 001159 581 RTYSGFRKRSLGVVQFDT--TRNRFLAAGD------EFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 581 ~~~~~~~~~~v~~i~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1135)
..+..........+..+| .+..++++.. +|.|+.+|..+|+.+..+..
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 888753210000011111 1345555543 58999999999999988864
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=4.8e-06 Score=88.22 Aligned_cols=205 Identities=9% Similarity=0.027 Sum_probs=132.7
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeE
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 919 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~ 919 (1135)
..+..+++++++..|..+. ++.|.++++.+......+.........++++|+++.+.++-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 4567899999888777776 68999999987654433433335789999999334555555567899999987543222
Q ss_pred EecCcCCCeEEEEEcCCCCeEEEEcC---CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--e
Q 001159 920 KLKGHQNRITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 994 (1135)
Q Consensus 920 ~l~~h~~~i~~l~~s~d~~~l~s~~~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 994 (1135)
...........++++|++..|..+.. .+.|..++++.... . .+... + ......++++++++.|.++ .
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~--~~~~~-~----~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R--ILAQD-N----LGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E--EEECT-T----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E--EEEEC-C----CCCCcEEEEcCCCCEEEEEECC
Confidence 22222246789999997665554443 36788888765331 1 11111 1 1346789999998877764 4
Q ss_pred cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 995 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 995 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.+.|.++|..+.....+... ......+++. ++.++++....+.|.++|..+++.+.++..
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 67899999954443333221 2234566654 344444444568999999999999888763
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.75 E-value=1.3e-06 Score=89.99 Aligned_cols=212 Identities=11% Similarity=0.017 Sum_probs=143.5
Q ss_pred CceEEEEeecCCCEEEEEe---CCeEEEEECCCccEEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 842 ESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
.....++|++|+.+.++.+ +++|.++|+.+++.+..+.-.. .....++++. +++.++.-.++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999876555544 4789999999999999876322 2334566653 45555555689999999999999
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
+.++..-... ...+++||+.|+.+..++.|.++|..+.+......+.. ++
T Consensus 99 ~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~---------------------------~~- 148 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY---------------------------NG- 148 (266)
T ss_dssp EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE---------------------------TT-
T ss_pred EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC---------------------------CC-
Confidence 9888632122 23456688877777778899999998866332211110 00
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccc---cccCCCCccE
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT---YAVSNTAHPL 1074 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1074 (1135)
+. -..+..+.|. +|+..+....++.|.+.|..+++.+.++......+. ........+.
T Consensus 149 --------~p----------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~n 209 (266)
T 2iwa_A 149 --------HR----------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLN 209 (266)
T ss_dssp --------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEE
T ss_pred --------cc----------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceE
Confidence 00 1235677777 776555555688999999999999999875422111 1011124557
Q ss_pred EEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1075 VIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1075 ~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.++|+|+...+++++...+.|++-++....
T Consensus 210 GIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 210 GIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 899999666788888899999999987643
No 253
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.73 E-value=0.002 Score=79.46 Aligned_cols=572 Identities=12% Similarity=0.098 Sum_probs=299.8
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|+++.-..+|. +. .|+.+| +..||-..-+... . . .......|.++.-..+| .|-+
T Consensus 21 ~n~V~~I~qD~~G~-lW-igT~~G-L~ryDG~~~~~~~--------~-------~---~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IW-IGSNKG-LFSYDGYSTQQHF--------T-------Y---GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSC-EE-EEESSC-EEEECSSCEEECS--------C-------T---TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCC-EE-EEECCC-ccccCCCceEEEE--------c-------c---CCCCCceEEEEEEcCCC-cEEE
Confidence 35799999999996 33 355566 5556632211100 0 0 01123568888877766 4556
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec-----CCCCCe
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPV 500 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~h~~~v 500 (1135)
|+.+| +..||..+..-.. ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66665 7899987743211 11112335777754 3553 3444444 6888897766543 221 123457
Q ss_pred eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-ecC----CCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECC
Q 001159 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1135)
Q Consensus 501 ~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1135)
.++.... +|. |..|+.+ -+..++..+...... ... ....|.++...+++..|..+. ++-+..+|..
T Consensus 149 ~~i~~d~--~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETT
T ss_pred EEEEEcC--CCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCC
Confidence 7776543 334 4445554 466777655432211 111 122488888887777555554 2248889988
Q ss_pred CCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CCCCcceEEEcCCCCEEEE
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGSLLAV 649 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~ 649 (1135)
+++... +.......|.++....+|...+ |+.+ -+.+++..+++.. .+.... ....|.++....+|.+-+
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 776432 2221222588888887776555 4444 4788888765443 222110 113477777777776444
Q ss_pred EECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccccCC
Q 001159 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1135)
Q Consensus 650 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1135)
|+..| +.++..... .+......
T Consensus 295 GT~~G-l~~~~~~~~---~~~~~~~~------------------------------------------------------ 316 (758)
T 3ott_A 295 GTDYG-ISLSRYNSA---LQFIPISQ------------------------------------------------------ 316 (758)
T ss_dssp EESSS-EEEECCCC----CEEEEHHH------------------------------------------------------
T ss_pred EeCCc-ccccccCCc---eeEEeccc------------------------------------------------------
Confidence 55555 444322111 00000000
Q ss_pred CCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEeccccCCC
Q 001159 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 809 (1135)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~ 809 (1135)
. ........| .++....+|. |-+++.+|.. .++......
T Consensus 317 ----------------------~--------------~~~~~~~~v-~~i~~D~~g~-lWiGt~~Gl~-~~~~~~~~~-- 355 (758)
T 3ott_A 317 ----------------------I--------------TGTGDGNQF-YSLFRDSKGF-YWFGGANGLI-RFTDPAGER-- 355 (758)
T ss_dssp ----------------------H--------------SCSCCCCBE-EEEEECTTCC-EEEEETTEEE-EESCTTSSC--
T ss_pred ----------------------C--------------CCCCCCceE-EEEEEcCCCC-EEEeeCCcce-eeccccccc--
Confidence 0 000011234 6777777777 4444455533 333211000
Q ss_pred CCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEe-C-----CCC
Q 001159 810 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM-S-----PPP 883 (1135)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~-----h~~ 883 (1135)
.....+...... ..+ . ...|.++...++|++-+.. ++-|..+|..+++...... . ...
T Consensus 356 -------~~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (758)
T 3ott_A 356 -------HDAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTN 419 (758)
T ss_dssp -------CCCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSS
T ss_pred -------ceeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCc
Confidence 000001100000 000 1 4568899988888866544 6689999998875543221 1 124
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccc------eee--EEec---C-cCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD------EVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~------~~~--~~l~---~-h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.|.++...+ ++. |-.|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-+..
T Consensus 420 ~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 420 WTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEE
T ss_pred eEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEE
Confidence 588888776 554 445776666888886531 111 1111 1 1235899999999998874444455888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGL 1031 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~ 1031 (1135)
+|..+++... +. ..+ ......+.++....+|.+.+.+. +.+..|+........+....--...|.++... +|
T Consensus 498 ~d~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g- 569 (758)
T 3ott_A 498 INPRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KN- 569 (758)
T ss_dssp EETTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TT-
T ss_pred EeCCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CC-
Confidence 9987765221 11 111 00013567888888998887764 56888887433333332110013568888763 55
Q ss_pred EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1032 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
.|..++.+| |..||..+.+... +. .+.. ... ...+...+| .|..|+.+|- ..++...
T Consensus 570 ~lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~----~~~--~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 570 SIWVSTTNG-LWIIDRKTMDARQ-QN----MTNK----RFT--SLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp EEEEEESSC-EEEEETTTCCEEE-C------CCC----CCS--EEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred CEEEECCCC-eEEEcCCCceeEE-ec----CCCC----cee--eeEEECCCC-cEEEecCCce-EEEChhh
Confidence 466666555 7888988776542 11 1111 111 223333255 6777777774 5556554
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.69 E-value=4.7e-06 Score=98.18 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=71.0
Q ss_pred cEEEEEEc-CCeEEEEeC-cCCCceeEecCCCCc-----------EEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 512 ~~l~s~s~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.|..+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 46666777 788888998 788877665443210 011222 2456666643 7889999999999
Q ss_pred EEEEeecccC---Ccee-EEEecCCCCEEEEEeC------CCeEEEEECCCCceEEEEeCC
Q 001159 579 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~~~---~~v~-~i~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..+..... ..+. .... .+..+++++. ++.|+.+|..+++.+..+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 9987764321 0111 1111 1345666654 799999999999999887643
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=2.7e-06 Score=86.28 Aligned_cols=203 Identities=13% Similarity=0.040 Sum_probs=132.3
Q ss_pred CCceEEEEeecCCCEEEEEe-CC--eEEEEECCCccEEEEEeCCCCCeE--EEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 841 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAAT--FLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~h~~~v~--~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
......+.|+ ++.+..+++ +| .|+++|+++++.+..+.-.. ... .+++. ++++.+....++.+.+||..+.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccC
Confidence 4456789998 676656555 55 89999999999999886433 333 35554 3445454556899999999999
Q ss_pred eeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec
Q 001159 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 995 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d 995 (1135)
+.+.++.... .-.++ ++|++.|+.+..++.|.++|..+.+......+.. +
T Consensus 118 ~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~------------------~--------- 167 (262)
T 3nol_A 118 RQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA------------------H--------- 167 (262)
T ss_dssp CEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEE------------------T---------
T ss_pred cEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc------------------C---------
Confidence 9999887432 22344 4577777776667789999998876433211100 0
Q ss_pred CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceecccc--ccCCCCcc
Q 001159 996 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY--AVSNTAHP 1073 (1135)
Q Consensus 996 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 1073 (1135)
++. -..++.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .......+
T Consensus 168 ---------g~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 168 ---------GEE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp ---------TEE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred ---------Ccc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 000 1234456665 7776665557889999999999999999876433321 11122345
Q ss_pred EEEEecCCCCCEEEEEecCCcEEE
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHV 1097 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~ 1097 (1135)
-.++|+|+..++++||-.=-.++-
T Consensus 228 NGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCceEE
Confidence 689999966666667655444433
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.66 E-value=1.1e-05 Score=94.93 Aligned_cols=112 Identities=9% Similarity=-0.006 Sum_probs=72.5
Q ss_pred cEEEEEEc-CCeEEEEeC-cCCCceeEecCCCCc-----------EEEEEEcCCCCE----EEEEecCCCCCCeEEEEEC
Q 001159 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-----------CTMMAYSADGTR----LFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 512 ~~l~s~s~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~~~~~----l~~~~~~~~~~~~i~~wd~ 574 (1135)
..++.++. ++.|..+|. .+++.+..+...... ...++++|.+.. +++++. ++.|+.+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 46777777 888888998 788877766543221 123455443333 666653 788999999
Q ss_pred CCCeEEEEeecccC---Ccee-EEEecCCCCEEEEEe------CCCeEEEEECCCCceEEEEeCC
Q 001159 575 SEGAIKRTYSGFRK---RSLG-VVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 575 ~~~~~~~~~~~~~~---~~v~-~i~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+|+.+........ ..+. ...+. + ..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 99999987754321 0111 11111 3 4566554 3799999999999999887643
No 257
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.65 E-value=0.0041 Score=78.78 Aligned_cols=605 Identities=9% Similarity=0.029 Sum_probs=305.2
Q ss_pred eeEEeecCCCCeeEEEEecCC----CeEEEEEe--ccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcce
Q 001159 338 TVVRTLNQGSNVMSMDFHPQQ----QTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1135)
Q Consensus 338 ~~~~~~~h~~~V~~v~~sp~g----~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 411 (1135)
+.+.++..-++|..++.-... ..++++++ .+|.+++..-.-+-.... . . .+. .-..+
T Consensus 366 ~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~-~----------~-----~l~-gv~~i 428 (1158)
T 3ei3_A 366 VAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHA-S----------I-----DLP-GIKGL 428 (1158)
T ss_dssp EEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEE-E----------E-----CCC-SCCEE
T ss_pred EeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEE-e----------e-----cCC-CccEE
Confidence 456777777899999886432 34555543 567888776432211110 0 0 022 22456
Q ss_pred EEEEEc---CCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeeccc---CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC
Q 001159 412 NRCVWG---PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1135)
Q Consensus 412 ~~v~~s---pd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~---~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 485 (1135)
+.+... ....+|+.+..+.+ .|+.+... .+... ...+.. ..+.+-.+ .++ .++=.. ...|++.+..
T Consensus 429 Wtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~~~~l-~~~---~ivQVt-~~~Irli~~~ 500 (1158)
T 3ei3_A 429 WPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFFCGNV-AHQ---QLIQIT-SASVRLVSQE 500 (1158)
T ss_dssp EEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEEEEEE-TTT---EEEEEE-SSCEEEEESS
T ss_pred EEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEEEEEc-CCC---eEEEEe-cCEEEEEECC
Confidence 666543 24568877777666 56665432 22211 111111 11211111 222 233222 2356777766
Q ss_pred CCeeeeeecCC-CCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-EecCCCCcEEEEEEcCC------CCEEE
Q 001159 486 AGRKQYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSAD------GTRLF 557 (1135)
Q Consensus 486 ~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~------~~~l~ 557 (1135)
.+..+..+... ...|...+.+. ..++.++ .+.+.++.++.++... ....-...|.|+++.+. +++++
T Consensus 501 ~~~~~~~w~~p~~~~I~~As~n~----~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 501 PKALVSEWKEPQAKNISVASCNS----SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp SCCEEEEECCTTCCCCCEEEECS----SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEE
T ss_pred CCeEEEEEECCCCCEEEEEEeCC----CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEE
Confidence 55566666533 33566666432 3555554 6788888776543211 11112457999999763 36777
Q ss_pred EEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec--CCCCEEEEEeCCCeEEEEEC--CCCceEEEEeCCCCCC
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLP 633 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s--~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~ 633 (1135)
+|.. .+++++++++.+.+.+....-.......++.+. ....++..|-.||.+..+.+ .+++....-...-+..
T Consensus 576 Vg~~---~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~ 652 (1158)
T 3ei3_A 576 IGLW---TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQ 652 (1158)
T ss_dssp EEET---TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSS
T ss_pred EEEC---CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCC
Confidence 7763 378999999998776654433221123333332 23357788889998866554 4455443311111122
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCC
Q 001159 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1135)
Q Consensus 634 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 713 (1135)
++.-..+...+..-+.+..+.-..++..+.. -.+..+....
T Consensus 653 pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~~-------------------------------------- 693 (1158)
T 3ei3_A 653 PTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLKE-------------------------------------- 693 (1158)
T ss_dssp CCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSSC--------------------------------------
T ss_pred ceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChHH--------------------------------------
Confidence 4544445444444444444555555543321 1111110000
Q ss_pred CCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc
Q 001159 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS 793 (1135)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~ 793 (1135)
+.....| +....+++ ++...++.+++..+++.. .-..+.+.+. ..+ ..++++|+.+.++++..
T Consensus 694 -----v~~~~~F---~se~~~~g--~v~~~~~~LrI~~i~~~~-~~~~~~ipL~-----~Tp-rri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 694 -----VNYMCPL---NSDGYPDS--LALANNSTLTIGTIDEIQ-KLHIRTVPLY-----ESP-RKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp -----CCEEEEE---CCSSSTTE--EEEECSSCEEEEEECCSS-SEEEEEEECS-----SEE-EEEEEEGGGTEEEEEEE
T ss_pred -----hceEecc---CcccCCCc--EEEEcCCceEEEEecccC-CeeEEEEeCC-----CCc-eEEEEcCCCCEEEEEEE
Confidence 0000011 01112222 223334557777765432 1122223222 344 88999999887776654
Q ss_pred cceeeeEEecc-----------------------------ccCCCCCcccccccCeeecCCCCcceec-cCCCCCCCCCc
Q 001159 794 NAVHKLWKWQR-----------------------------TERNPSGKATANVAPQLWQPPSGTLMTN-DINESKPTEES 843 (1135)
Q Consensus 794 dg~i~iw~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~ 843 (1135)
+... ++... ......+.......+++.|+.+.+.+.. .+.. ...
T Consensus 757 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~----nE~ 830 (1158)
T 3ei3_A 757 RIEV--QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----NEY 830 (1158)
T ss_dssp EEEE--ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT----TEE
T ss_pred eccc--cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC----Ccc
Confidence 4311 11100 0000012222345678888887765433 3333 455
Q ss_pred eEEEEe---ecC-CCEEEEEe-----------CCeEEEEECCCccEEEEEe-CCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001159 844 AACIAL---SKN-DSYVMSAS-----------GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSV 907 (1135)
Q Consensus 844 i~~l~~---s~d-g~~la~~~-----------dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v 907 (1135)
+.+++. ..+ ..++++|. .|.|.+|++..+++....+ ...+.|++++-- +|++||.. ...|
T Consensus 831 ~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l 906 (1158)
T 3ei3_A 831 ALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTV 906 (1158)
T ss_dssp EEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEE
T ss_pred eEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEE
Confidence 566553 322 46888874 1569999987554332221 246778888755 35555433 4789
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 987 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 987 (1135)
++|++...+.+..-..+-..|..+.....+.+++.|..-..|.+...+..+..-........ ...++++.|-.++
T Consensus 907 ~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~-----~~~vta~~~ld~~ 981 (1158)
T 3ei3_A 907 RLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFN-----PNWMSAVEILDDD 981 (1158)
T ss_dssp EEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCS-----CBCEEEEEEEETT
T ss_pred EEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecc-----cccEEEEEEEccC
Confidence 99999866544311111122333333335778888887777777654432211111111111 1567888887777
Q ss_pred cEEEEEecCeEEEEecCCc--------eeeccCCCCCCCCCEEEEEE---eeC---------CCEEEEEeCCCeEEEEEC
Q 001159 988 THLLVVHESQISVYDSKLE--------CSRSWSPKDALPAPISSAIY---SCD---------GLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 988 ~~l~~~~d~~v~vwd~~~~--------~~~~~~~~~~h~~~i~~~~~---s~d---------~~~l~~~~~dg~I~vwd~ 1047 (1135)
.++++-.++.+.+...... .+...... .....|+++.- .+. ...++.++.+|.|.+.-.
T Consensus 982 t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~f-hlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 982 NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLF-HLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEE-ECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEE-eCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 6666556788888876221 11111000 01456777652 222 234677788998877643
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=2.7e-05 Score=91.79 Aligned_cols=374 Identities=10% Similarity=0.004 Sum_probs=202.8
Q ss_pred EEEEEcC-CCcEEEEEc-CCCeeeeeecCCCC-Ce----------eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee
Q 001159 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-PV----------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1135)
Q Consensus 469 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~-~v----------~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 535 (1135)
.++.++. ++.|.-+|. .+|+.+.++..... .+ ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4566666 889999999 89998877653221 00 11222 22578888999999999999998887
Q ss_pred EecCCCC----cEE-EEEEcCCCCEEEEEecCC--CCCCeEEEEECCCCeEEEEeecccCC-------------------
Q 001159 536 DYDAPGN----WCT-MMAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 589 (1135)
Q Consensus 536 ~~~~~~~----~i~-~~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 589 (1135)
....... .+. .... .+ ..++++.... ..++.|+.+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6554321 111 1111 13 3555544210 12678999999999999887643210
Q ss_pred ------------------ceeEEEecCCCCEEEEEeCC----------------CeEEEEECCCCceEEEEeCCCCC---
Q 001159 590 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 632 (1135)
Q Consensus 590 ------------------~v~~i~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 632 (1135)
....++++++...++.+..+ +.|..+|..+++.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00235667776777776532 36999999999999888653221
Q ss_pred -CCcce---EEEcCCCC---EEEEEECCCcEEEEEcCCCchhhhhccccc--cccccCCCCCCCCCCcccccCCCccccc
Q 001159 633 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA--MDKNRCPSEPISSKPLTINALGPASNVS 703 (1135)
Q Consensus 633 -~~v~~---~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 703 (1135)
..+.. +....+|+ .++.++.+|.+.++|..+++.+. ...-.. .....+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w-~~~~~~~~~w~~~~---------------------- 354 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV-AEKVDPAVNVFKKV---------------------- 354 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE-EEESSTTCCSEEEE----------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe-eecccCCccccccc----------------------
Confidence 01111 22224674 67788889999999999984322 211100 000000
Q ss_pred cccCCCCCCCCCCCCCccccccccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEec
Q 001159 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTN 783 (1135)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 783 (1135)
.+. .++.+.... +... .........+.......- ..++++|
T Consensus 355 ---d~~-------------------------~g~p~~~~~------~~~~----~~~~~~~~~P~~~Gg~~w-~~~a~dp 395 (571)
T 2ad6_A 355 ---DLK-------------------------TGTPVRDPE------FATR----MDHKGTNICPSAMGFHNQ-GVDSYDP 395 (571)
T ss_dssp ---CTT-------------------------TCSEEECGG------GCCC----TTCCEEEESSCTTCSSCS-CBCEEET
T ss_pred ---ccc-------------------------CCceecccc------cCCC----CCCCceEECCCCccccCC-CCceECC
Confidence 000 000000000 0000 000001111111111112 4578899
Q ss_pred CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCe
Q 001159 784 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGK 863 (1135)
Q Consensus 784 dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~ 863 (1135)
+...+++...+....++.... ....+.. . -.....+..+|.+. + ...+|.
T Consensus 396 ~~g~~yv~~~~~~~~~~~~~~------------------~~~~g~~---------~-~g~~~~~~~~~~~~-~-~~~~g~ 445 (571)
T 2ad6_A 396 ESRTLYAGLNHICMDWEPFML------------------PYRAGQF---------F-VGATLAMYPGPNGP-T-KKEMGQ 445 (571)
T ss_dssp TTTEEEEEEECEEEEEEECCC------------------CCCTTSC---------C-CCEEEEEEECTTST-T-SCCCEE
T ss_pred CCCEEEEEchhcccccccccc------------------ccccCCc---------c-ccccceeccCcccc-C-CCCCCe
Confidence 988888877765544442211 0001110 0 11111223333322 0 012578
Q ss_pred EEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCC-eEEEEEcCCCCeEEE
Q 001159 864 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 942 (1135)
Q Consensus 864 i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s 942 (1135)
|..||+.+++.+.++.... .+....+.. .+.++++++.||.|+.||..+|+.+..+...... -..+.+..+|+.++.
T Consensus 446 l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 446 IRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 9999999999887775332 222233333 3456777999999999999999999888643221 122445577775554
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=3.3e-06 Score=85.48 Aligned_cols=200 Identities=12% Similarity=0.035 Sum_probs=133.1
Q ss_pred CCceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCe--EEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ -. ... ..+++. ++++.+....++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 44557888873 44444445 789999999999998887 22 233 335554 345555566789999999999999
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
+.++..- ..-++++ +|++.|+.+..++.|.++|.++.+......+.. +
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~----------- 176 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------R----------- 176 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------T-----------
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------C-----------
Confidence 9998743 3334454 578888877778899999999876433211110 0
Q ss_pred EEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceecccc---ccCCCCccE
Q 001159 998 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY---AVSNTAHPL 1074 (1135)
Q Consensus 998 v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1074 (1135)
+.. -..++.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. ........-
T Consensus 177 -------g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 177 -------GQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp -------TEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred -------Ccc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 000 1234556665 7775655556889999999999999999876433221 111223456
Q ss_pred EEEecCCCCCEEEEEecCCcE
Q 001159 1075 VIAPHPSEPNQIALGMSDGAV 1095 (1135)
Q Consensus 1075 ~~~~~~~~~~~l~sg~~dg~v 1095 (1135)
.++|+|+..++++||-.=-.+
T Consensus 239 GIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp EEEECTTTCCEEEEETTCSEE
T ss_pred EEEEcCCCCEEEEeCCCCCce
Confidence 899999777788887654443
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.61 E-value=2.6e-05 Score=91.96 Aligned_cols=192 Identities=11% Similarity=0.045 Sum_probs=119.7
Q ss_pred EEEEcCCCcEEEEEcCCCeeeeeecCCCCCe---------eEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCC
Q 001159 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 470 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 540 (1135)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4444443349999999999987775432210 11122 1257888899999999999999988765543
Q ss_pred CC----cEE-EEEEcC---CCC-EEEEEecCC--CCCCeEEEEECCCCeEEEEeecccC---------------------
Q 001159 541 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 588 (1135)
Q Consensus 541 ~~----~i~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1135)
.. .+. ...+.. +++ .++++.... ..++.|+.+|..+|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 455543211 1367899999999999887653210
Q ss_pred -------------------CceeEEEecCCCCEEEEEeC--------------------C----CeEEEEECCCCceEEE
Q 001159 589 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 625 (1135)
Q Consensus 589 -------------------~~v~~i~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1135)
..-...+++|+...++.+.. | +.|..+|..+++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123566777778887653 2 5899999999999988
Q ss_pred EeCCCCC----CCcc-eEEEc---CCCC---EEEEEECCCcEEEEEcCCCc
Q 001159 626 VDADGGL----PASP-RLRFN---KEGS---LLAVTTSDNGIKILANSDGV 665 (1135)
Q Consensus 626 ~~~~~~~----~~v~-~~~~~---~~~~---~l~~~~~dg~i~iwd~~~~~ 665 (1135)
++...+. ..+. -+.+. .+|+ .++.++.+|.+.++|..+++
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 8653221 0111 12222 4674 78889999999999999994
No 261
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=7.8e-06 Score=84.24 Aligned_cols=197 Identities=8% Similarity=0.008 Sum_probs=137.6
Q ss_pred CEEEEEEecCCCeEEEEEEc--CCCcEEEEEcCCCeeeeeecCCC-CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCC
Q 001159 455 GVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 531 (1135)
....++|++|+. ++++.+ .++.|.+.|+.+++.+.++.-.. .....+++. ++ ...++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~--Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~-~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAENDT--LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NE-KLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECSTTE--EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCCCe--EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CC-EEEEEEecCCEEEEEECCCC
Confidence 367899999864 455544 36899999999999988865222 222345554 22 44455556899999999988
Q ss_pred CceeEecCC-CCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccC-C---ceeEEEecCCCCEEEEE
Q 001159 532 GSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-R---SLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 532 ~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~---~v~~i~~s~~~~~l~~~ 606 (1135)
+.+..+... .. ...+++||+.++++. +.+.|.++|..+.+.+..+..... . .++.+.|. ++..++..
T Consensus 97 ~v~~~i~~g~~~---g~glt~Dg~~l~vs~----gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 97 SNIKNFTHQMKD---GWGLATDGKILYGSD----GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp EEEEEEECCSSS---CCEEEECSSSEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred cEEEEEECCCCC---eEEEEECCCEEEEEC----CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 877777544 22 233566888888653 377999999999998888774321 1 25567777 66444444
Q ss_pred eCCCeEEEEECCCCceEEEEeCCC-----------CCCCcceEEEcCCCCEEE-EEECCCcEEEEEcCCC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~ 664 (1135)
..++.|.+.|..+++.+..+...+ .....+.++|+|+++.++ ++...+.+.+.++...
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 467899999999999999987531 112458999999887555 5556788888887544
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.60 E-value=3e-05 Score=91.06 Aligned_cols=166 Identities=12% Similarity=0.145 Sum_probs=102.8
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEcccceeeEEecCcCC----------CeEEEEEc-CCC--
Q 001159 887 FLAFHPQDNNIIAIGMED----------------SSVQIYNVRVDEVKTKLKGHQN----------RITGLAFS-PTL-- 937 (1135)
Q Consensus 887 ~l~~sp~~~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~h~~----------~i~~l~~s-~d~-- 937 (1135)
.+++.+ ...+++.++.+ +.|..+|..+|+.+..++.... ++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55667767655 3799999999999877653211 121 2222 567
Q ss_pred -CeEEEEcCCCcEEEEeCCCCceeceeeeec----------CCCCC---------------------CCCCCceEEEECC
Q 001159 938 -NALVSSGADAQLCMWSIDKWEKLKSRFIQA----------PAGRQ---------------------SPLVGETKVQFHN 985 (1135)
Q Consensus 938 -~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~v~~~~~s~ 985 (1135)
+.++.++.+|.+.+.|..+++.+-...... ..+.. .....-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999998654332211 00000 0000112467788
Q ss_pred CCcEEEEE----------------------------------------ecCeEEEEec-CCceeeccCCCCCCCCCEEEE
Q 001159 986 DQTHLLVV----------------------------------------HESQISVYDS-KLECSRSWSPKDALPAPISSA 1024 (1135)
Q Consensus 986 dg~~l~~~----------------------------------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~i~~~ 1024 (1135)
+.+++++. ..+.|..||+ +++.+...... .++.+-
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g 478 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGG 478 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSB
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCc
Confidence 77766552 1256777777 66655443211 111111
Q ss_pred EEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 1025 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1025 ~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
.+...+.+++.++.||.++.||.++|+.+-++..
T Consensus 479 ~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 479 TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 2334677788899999999999999999987753
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.59 E-value=6.3e-06 Score=101.20 Aligned_cols=248 Identities=12% Similarity=0.053 Sum_probs=137.0
Q ss_pred CeeEEEEe-cCCCeEEEEEeccc----eEEEEEcCCc-cccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCC
Q 001159 348 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1135)
Q Consensus 348 ~V~~v~~s-p~g~~lla~g~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~ 421 (1135)
.+...+|| |||++++++.+.+| .|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 67889999 99996665555444 4999999988 63211 0 1 11234689999999
Q ss_pred eEEEEeCC-----CeEEEEEeCCCCceeeeeEee-cccCCEEEEEEecCCCeEEEEEEc-CCCcEEEEEcCCCe-ee--e
Q 001159 422 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 491 (1135)
Q Consensus 422 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~v~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 491 (1135)
.|+....+ ..|.++++.++..... ..+. .+......+.|+|||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 98888765 2588888877542211 1222 233456788999999963333322 34578889988752 12 3
Q ss_pred ee-cCCCCCeeEEEeeccCCccEEEEEEcC----CeEEEEeCcCCCceeE-ecCCCC--cEEEEEEcCCCCEEEEEecCC
Q 001159 492 TF-EGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 563 (1135)
Q Consensus 492 ~~-~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~~~ 563 (1135)
.+ ........++.|+.. +.+++....+ ..|..+|+.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~g--~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHGT--SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEETT--TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeeeC--CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 33 334455566654432 1344444443 3566667654222222 222333 4455555 4566665442 2
Q ss_pred CCCCeEEEEEC-------CCCeEEEEeecccCCceeEEEe----cCCCCE-EEEEeC---CCeEEEEECCCCce
Q 001159 564 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRNR-FLAAGD---EFQIKFWDMDNMNM 622 (1135)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~i~~----s~~~~~-l~~~~~---dg~i~iwd~~~~~~ 622 (1135)
++...|+++|+ .+++..+.+.......+..+.+ ++++.. +++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34556788886 3443133333222112233322 345543 444332 24677888877663
No 264
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.58 E-value=0.0048 Score=76.05 Aligned_cols=529 Identities=10% Similarity=0.043 Sum_probs=272.9
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...|.++.-..+|. |. .|+.+| +..||..+.+.... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-lW-igT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LY-MGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-EE-EEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-EE-EEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 34689988888885 44 455554 78899876532210 0011234777654 344 5666
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEe-e-cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCC----CC
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEI-D-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH----EA 498 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h----~~ 498 (1135)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -|..+|..+++.... .... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 58888987653221 1000 0 1134688888877776 333 4444 477888776654321 1111 22
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
.|.++.... ++..|..|+. +-+..+|..+.+...........|.++....+|...+.. . . -+.+++..++.
T Consensus 192 ~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCTTSC
T ss_pred eeEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecCCCc
Confidence 477776544 3355555554 457778876543322212223468888888888766643 1 2 38888887665
Q ss_pred EEEEeec------ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe-----CCCCCCCcceEEEcCCCCEE
Q 001159 579 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----ADGGLPASPRLRFNKEGSLL 647 (1135)
Q Consensus 579 ~~~~~~~------~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l 647 (1135)
....... -....|.++..+.+|.. ..|+..| +.++.... ....+. .......|.++.-..+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 11225888888877764 4455556 54443322 112221 01112357777777777655
Q ss_pred EEEECCCcEEEEEcCCCch-hhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 001159 648 AVTTSDNGIKILANSDGVR-LLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1135)
Q Consensus 648 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1135)
+ |+.+ .+..++..++.. .+..+.
T Consensus 339 i-Gt~~-Gl~~~~~~~~~~~~~~~~~------------------------------------------------------ 362 (758)
T 3ott_A 339 F-GGAN-GLIRFTDPAGERHDAIWYR------------------------------------------------------ 362 (758)
T ss_dssp E-EETT-EEEEESCTTSSCCCCEEEC------------------------------------------------------
T ss_pred E-eeCC-cceeecccccccceeEEec------------------------------------------------------
Confidence 5 4554 455555443210 000000
Q ss_pred cCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecccceeeeEEecccc
Q 001159 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 806 (1135)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~ 806 (1135)
.... ........| .++.-..+|. |-+++. +-+..|+.....
T Consensus 363 -------------------------~~~~-----------~~~l~~~~v-~~i~~d~~g~-lWigt~-~GL~~~~~~~~~ 403 (758)
T 3ott_A 363 -------------------------MGDK-----------TYPLSHNRI-RHIYEDKEQQ-LWIATD-GSINRYDYATRQ 403 (758)
T ss_dssp -------------------------TTCS-----------SSCCSCSCE-EEEEECTTSC-EEEEET-TEEEEEETTTTE
T ss_pred -------------------------cCCc-----------CCCCCCCce-EEEEECCCCC-EEEEeC-CcHhhcCcCCCc
Confidence 0000 000011234 6777777776 444443 346666543211
Q ss_pred CCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEEEEEeCCeEEEEECCCc-----cEE---EEE
Q 001159 807 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TMF 878 (1135)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-----~~~---~~~ 878 (1135)
. ..+.... ...... ...|.++...++|++.+....+-|.++|..+. ... ..+
T Consensus 404 ~------------~~~~~~~-------~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 463 (758)
T 3ott_A 404 F------------IHYNIVD-------NTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNY 463 (758)
T ss_dssp E------------EEEEEEC-------CC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEE
T ss_pred E------------EEeecCC-------CcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccc
Confidence 1 0000000 000001 45688888888887666444667888886531 111 122
Q ss_pred e---C-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC---cCCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 879 M---S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 879 ~---~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
. + ....|.++...+ ++.+-+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..
T Consensus 464 ~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~ 540 (758)
T 3ott_A 464 SVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMR 540 (758)
T ss_dssp CGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEE
T ss_pred ccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEE
Confidence 1 1 223588999888 666655333344588899887764432111 12468889888888877654 445 888
Q ss_pred EeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEe-eCC
Q 001159 952 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDG 1030 (1135)
Q Consensus 952 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s-~d~ 1030 (1135)
++..++.... .. ..+-. ...|.++... +|.+.+++ ++.+..+|........+... ...+....+. ++|
T Consensus 541 ~~~~~~~~~~---~~-~~gl~--~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G 609 (758)
T 3ott_A 541 INPKDESQQS---IS-FGSFS--NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKED 609 (758)
T ss_dssp ECC--CCCCB---CC-CCC-----CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C---CCCCSEEEEETTTT
T ss_pred EecCCCceEE---ec-ccCCC--ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC---CCceeeeEEECCCC
Confidence 8877654211 11 11111 1346777664 66655555 45588888844333333221 1223344444 466
Q ss_pred CEEEEEeCCCeEEEEECC
Q 001159 1031 LLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 1031 ~~l~~~~~dg~I~vwd~~ 1048 (1135)
. |+.|+.+|.+ .++.+
T Consensus 610 ~-l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 610 C-VYLGGADGFG-ISHSN 625 (758)
T ss_dssp E-EEEECBSEEE-EEEC-
T ss_pred c-EEEecCCceE-EEChh
Confidence 5 6667777754 55554
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.57 E-value=4.9e-06 Score=84.37 Aligned_cols=194 Identities=8% Similarity=0.049 Sum_probs=128.2
Q ss_pred EEEEEecCCcceeEecccc--eeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
..+.|+ ++..+.+.+.+| .|+.+ |+.++++...... ........+.+++.
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~v----------------------D~~Tgkv~~~~~l-----~~~~FgeGit~~g~ 97 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKV----------------------DIESGKTLQQIEL-----GKRYFGEGISDWKD 97 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEE----------------------CTTTCCEEEEEEC-----CTTCCEEEEEEETT
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEE----------------------ECCCCcEEEEEec-----CCccceeEEEEeCC
Confidence 788888 666555555544 67666 5555554443221 22222333333556
Q ss_pred EEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CC
Q 001159 855 YVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NR 927 (1135)
Q Consensus 855 ~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~ 927 (1135)
.|.... ++.+.++|..+++.+.++.... ....+++ +++.|+....+++|.++|..+.+.+..+.-.. ..
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE 173 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence 666665 7999999999999999997533 2234445 55666666667889999999988887765321 33
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC----CCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
+..+.|. +|+..|..-.+..|.+.|..+++......+..+... .....-.+.+||+|+++.|.+++..-=++|.+
T Consensus 174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 5568886 788777777788999999999997665544322211 11113458899999999988877665566655
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.57 E-value=1.1e-05 Score=88.20 Aligned_cols=237 Identities=13% Similarity=0.043 Sum_probs=147.0
Q ss_pred ceEEEEeecCCCEEEEEe-CCeEEEEECCCccEEEEEeC-C-------------------CCCeEEEEEecCCCcEEEEE
Q 001159 843 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-P-------------------PPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-h-------------------~~~v~~l~~sp~~~~~lasg 901 (1135)
...+++++++|+++.++. ++.|..||..+++.. .+.. . ...+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 346788999999666666 789999998765543 2221 0 135788999973444 5555
Q ss_pred eCCCcEEEEEcccceeeEEec----C-cCCCeEEEEEcC-CCCeEEEEcC-----------------CCcEEEEeCCCCc
Q 001159 902 MEDSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWE 958 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~i~~l~~s~-d~~~l~s~~~-----------------D~~i~iwd~~~~~ 958 (1135)
...+.|..+|..+++. ..+. + .......+++.+ +|.++++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888776542 2222 1 123478899999 9988877543 3668888887665
Q ss_pred eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecCCc---eeeccCCCCCCCCCEEEEEEeeCCCEE
Q 001159 959 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE---CSRSWSPKDALPAPISSAIYSCDGLLV 1033 (1135)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~~---~~~~~~~~~~h~~~i~~~~~s~d~~~l 1033 (1135)
... ..... .....++|+|||++|.++ ..+.|.+|++.+. ....+... .+ ...++++++|++.
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFW 243 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEE
Confidence 221 11111 234689999999977664 4688999998432 11111111 23 6789999999976
Q ss_pred EEEeC----------CCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCC
Q 001159 1034 YAGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1103 (1135)
Q Consensus 1034 ~~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~ 1103 (1135)
++... .+.|..+|.. |+.+..+.... +.. ...+.++++. +++++++....+.|..+++...
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~~--~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PFA--GEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TTT--TSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred EEecCcccccccCCCccEEEEECCC-CCEEEEEECCC----CCc--cccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 66544 4678888875 77776654321 100 1223344442 5667777777889999998654
Q ss_pred c
Q 001159 1104 E 1104 (1135)
Q Consensus 1104 ~ 1104 (1135)
.
T Consensus 315 ~ 315 (322)
T 2fp8_A 315 G 315 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 267
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.56 E-value=1.3e-05 Score=87.52 Aligned_cols=250 Identities=9% Similarity=0.026 Sum_probs=145.9
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCC------CCCCCCceEEEEee
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE------SKPTEESAACIALS 850 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~~i~~l~~s 850 (1135)
.++++.++|+.+.+...++.|..|+...... ..|.............+ ... ...+..++++
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~p~gi~~~ 88 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPL-CGRTYDISYN 88 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHH-HCCEEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhcccc-CCCCceEEEc
Confidence 6788999998788877788888775432111 00100000000000000 000 2347889999
Q ss_pred c-CCCEEEEEeCCeEEEEECCCccEEEEEeC-----CCCCeEEEEEecCCCcEEEEEeC-----------------CCcE
Q 001159 851 K-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME-----------------DSSV 907 (1135)
Q Consensus 851 ~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~lasg~~-----------------dg~v 907 (1135)
+ +|+++++...+.|..+|..+++. ..+.. .......+++.+.+|++.++-.. ++.|
T Consensus 89 ~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 89 LQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred CCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 8 66554443456688899876543 22221 12346889999823455554322 3678
Q ss_pred EEEEcccceeeEEecCcCCCeEEEEEcCCCCeEE-EEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 908 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 908 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
..||..+++...... .......|+|++|+++|. +-...+.|.++++.....-....+.... . ...+++.++
T Consensus 168 ~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~~ 239 (322)
T 2fp8_A 168 IKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNAD 239 (322)
T ss_dssp EEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECTT
T ss_pred EEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECCC
Confidence 899987776433222 223456899999998554 4466788999998853211111111111 2 567999999
Q ss_pred CcEEEEE-e----------cCeEEEEecCCceeeccCCCCCC-CCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 987 QTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 987 g~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
|+++++. . .+.|..+|..++.+..+....+. ...++++++ .+++++++...++.|.++++..
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9977774 3 36688888877766655443221 234666766 5677666666788999999864
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.54 E-value=0.00019 Score=84.49 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=122.7
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCC-------EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 492 (1135)
+..+.+++.++.|.-+|..+|+.+-... ....... -..+++ .+. .++.++.|+.|.-+|..+|+.+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence 3445555554448888998887654221 1110000 012223 233 577778899999999999998876
Q ss_pred ecCCCC----Cee-EEEeecc-CCcc-EEEEEE------cCCeEEEEeCcCCCceeEecCCCCcE---------------
Q 001159 493 FEGHEA----PVY-SVCPHHK-ESIQ-FIFSTA------IDGKIKAWLYDYLGSRVDYDAPGNWC--------------- 544 (1135)
Q Consensus 493 ~~~h~~----~v~-~i~~~~~-~~~~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~i--------------- 544 (1135)
...... .+. +..+... .+|+ .++.++ .++.|..+|..+++.+.........+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 643221 111 1111111 1222 566655 37899999999988776543321000
Q ss_pred --------------------------EEEEEcCCCCEEEEEecCC----------CC----------CCeEEEEECCCCe
Q 001159 545 --------------------------TMMAYSADGTRLFSCGTSK----------EG----------ESHLVEWNESEGA 578 (1135)
Q Consensus 545 --------------------------~~~~~s~~~~~l~~~~~~~----------~~----------~~~i~~wd~~~~~ 578 (1135)
..++++|+...++.+..+. .+ .+.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 1356677777777665310 11 2689999999999
Q ss_pred EEEEeecc-cC--------CceeEEEec-CCCC---EEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001159 579 IKRTYSGF-RK--------RSLGVVQFD-TTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 579 ~~~~~~~~-~~--------~~v~~i~~s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1135)
.+..++.. ++ .++. +... .+|+ .++.++.+|.++++|..+++.+......
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence 99988642 11 0111 2221 4664 6778999999999999999999887654
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=2.2e-05 Score=78.99 Aligned_cols=207 Identities=13% Similarity=0.075 Sum_probs=135.5
Q ss_pred CCceEEEEeecCCCEEEEEe-C--CeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001159 841 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 916 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~ 916 (1135)
......+.|+. +.+..+.+ + ..|+++|+.+++.+..+.-.... -..+++. ++++......++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 55667899986 55555554 3 48999999999999988644322 2345554 34555556678999999999999
Q ss_pred eeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecC
Q 001159 917 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 996 (1135)
Q Consensus 917 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 996 (1135)
.+.++.... .-.+++ +|++.|+.+..++.|.++|..+.+......+.. +
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~---------------------------~- 145 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA---------------------------G- 145 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE---------------------------T-
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc---------------------------C-
Confidence 999987432 334554 577777766678889999999876433211110 0
Q ss_pred eEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccc---cCCCCcc
Q 001159 997 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA---VSNTAHP 1073 (1135)
Q Consensus 997 ~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1073 (1135)
+.. -..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+... ......+
T Consensus 146 --------g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 146 --------GRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp --------TEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred --------Ccc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 000 1234455554 77766655567899999999999999998765433321 1122345
Q ss_pred EEEEecCCCCCEEEEEecCCcEEEEec
Q 001159 1074 LVIAPHPSEPNQIALGMSDGAVHVVEP 1100 (1135)
Q Consensus 1074 ~~~~~~~~~~~~l~sg~~dg~v~~W~~ 1100 (1135)
-.++++|...++++||-.=-.++--.+
T Consensus 207 NGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 689999976677777766555444333
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=9.9e-05 Score=79.69 Aligned_cols=242 Identities=10% Similarity=-0.000 Sum_probs=145.0
Q ss_pred CCcceeeEEeecCCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceE
Q 001159 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1135)
Q Consensus 333 d~~~~~~~~~~~h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1135)
+..+.+.+..+........++|+|+|+ ++++-..++.|..||..++.. . .+ .......
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~-~-----~~---------------~~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQ-I-----HA---------------TVEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEE-E-----EE---------------ECSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCceE-E-----EE---------------eCCCCce
Confidence 345566777776556788999999998 777766788999999775321 1 01 1123588
Q ss_pred EEEEcCCCCeEEEEeCC-C-eEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCee-
Q 001159 413 RCVWGPDGLMLGVAFSK-H-IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 489 (1135)
Q Consensus 413 ~v~~spd~~~las~~~d-g-~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~- 489 (1135)
.++++++|+++++.... + .|..+|..+++.. ....+ ........++..+++. .+++-..++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976655433 2 4666777766532 22122 1222344555555554 556666688999999776531
Q ss_pred eeee---------cCCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc---eeEecCCCCcEEEEEEcCCCCEEE
Q 001159 490 QYTF---------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1135)
Q Consensus 490 ~~~~---------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 557 (1135)
+... ...-...+.+ ++++ +.++++-...+.|..|+++.... ...+. .......++++++|++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEE
Confidence 2110 0111233445 5543 13455556678999999875211 11111 112345688999998655
Q ss_pred EEecCCCCCCeEEEEECCCCeEEE--EeecccCCceeEEEec---CCCCEEEEEeCCC
Q 001159 558 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDEF 610 (1135)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~i~~s---~~~~~l~~~~~dg 610 (1135)
+.. ..+.|.++|.. |+... .+.... ....+++|. ++++.|+.++..+
T Consensus 228 a~~----~~~~V~~~~~~-G~~~~~~~~~~~~-~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 228 ATH----IYNSVVRIAPD-RSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ECB----TTCCEEEECTT-CCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EeC----CCCeEEEECCC-CCEEEEeeccccc-CCceEEEEecccCCCCEEEEECCCC
Confidence 543 25679999975 65533 222221 257889998 8888777765443
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.48 E-value=9.2e-06 Score=82.27 Aligned_cols=193 Identities=7% Similarity=-0.072 Sum_probs=126.9
Q ss_pred EEEEEecCCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCEE
Q 001159 777 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 856 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~l 856 (1135)
..+.|+ ++...++.+.+|.|+.+ |+.++++....+.. ......+++ +++.|
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~i----------------------D~~Tgkv~~~~l~~----~~FgeGit~--~g~~L 108 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQL----------------------SLESAQPVWMERLG----NIFAEGLAS--DGERL 108 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEC----------------------CSSCSSCSEEEECT----TCCEEEEEE--CSSCE
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEE----------------------ECCCCcEEeEECCC----CcceeEEEE--eCCEE
Confidence 678887 35555666667787776 44555554443111 222233444 45555
Q ss_pred EEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CCeE
Q 001159 857 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NRIT 929 (1135)
Q Consensus 857 a~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~i~ 929 (1135)
.... ++.+.+||..+++.+.++.... .-..++ + +++.|+.+..+++|.++|..+.+.+..+.-.. ..++
T Consensus 109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp EEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 5555 8999999999999999998532 223444 4 56677777778999999999998887765322 2456
Q ss_pred EEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCC---C--CCCCCCCceEEEECCCCcEEEEEecCeEEEEec
Q 001159 930 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---G--RQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 930 ~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.|.|. +|+..|..-.+..|.+.|..+++.+....+..+. . ......-.+.+|++|+++.|++++..-=++|.+
T Consensus 185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 78887 8887777777889999999999977665443211 0 111113458899999988887766554445544
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.47 E-value=2.3e-05 Score=94.88 Aligned_cols=279 Identities=9% Similarity=0.006 Sum_probs=156.0
Q ss_pred eEEEEec-CCCeEEEEEeccc-----------eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 350 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 350 ~~v~~sp-~g~~lla~g~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
.++++.| +|+ +++.|+.++ .+.+||..+++..... . ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~------------~----~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT------------V----TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE------------E----EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc------------c----cCCCCCCccccccCC
Confidence 3677888 776 777776432 6889998877543210 0 011233344567888
Q ss_pred CCCCeEEEEeC-CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CC-----CcEEEEEcCCCeee
Q 001159 418 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRKQ 490 (1135)
Q Consensus 418 pd~~~las~~~-dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~ 490 (1135)
++|+++++|+. +..+.+||..+++-.. ...+.... .-.+++..++++ +++.|+ .+ ..+.+||..+++-.
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 99999999984 5589999998753221 11221111 123455667888 777787 44 57999999887643
Q ss_pred eee----cC-CCCCeeEEEeeccCCccEEEEEEcC---------CeEEEEeCcCCCceeEecCC---------CCcEEEE
Q 001159 491 YTF----EG-HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAP---------GNWCTMM 547 (1135)
Q Consensus 491 ~~~----~~-h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~---------~~~i~~~ 547 (1135)
..- .. ....-. ..+. .++..++.++.+ ..+..||..+.......... ...-.++
T Consensus 328 ~~~~~~~~p~~~~~~~-~~~~--~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQ-GLYR--SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EETTSCSGGGCCCCTT-GGGT--TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eCCCcccccccccccc-ceee--cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 320 00 000000 0111 122344445444 45678888766533322111 1122444
Q ss_pred EEcC-CCCEEEEEecCCCC----CC---eEEEEECCCCeEEEEe--ecccCCceeEEEecCCCCEEEEEeCC--------
Q 001159 548 AYSA-DGTRLFSCGTSKEG----ES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-------- 609 (1135)
Q Consensus 548 ~~s~-~~~~l~~~~~~~~~----~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~~~~~d-------- 609 (1135)
.|.. +++.++.|+.+... .. .|.+||..+....... .......-.+.+..++++.++.|+.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4543 66666776642110 11 6888998877654433 22222123445667899999998754
Q ss_pred ---CeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEEC
Q 001159 610 ---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1135)
Q Consensus 610 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 652 (1135)
..+.+||..+.+....-..........+..+.+++++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987654332111111112234566789999999985
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=0.00011 Score=79.34 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=138.6
Q ss_pred cceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEc-CCC-cEEEEEcCC
Q 001159 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 486 (1135)
Q Consensus 409 ~~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~-~d~-~i~iwd~~~ 486 (1135)
.....++|+++|+++++-..++.|..||..+. ... .+ ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45778999999997777768899999987753 221 11 2234688999999998 444443 333 477778777
Q ss_pred CeeeeeecC-CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeE-e-------c--CCCCcEEEEEEcCCCCE
Q 001159 487 GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 555 (1135)
Q Consensus 487 ~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~~~~~ 555 (1135)
++....... .......++..+ ++..+++...++.|..+|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 765432221 122234444432 224444444688888888764321111 0 0 111234455 788888
Q ss_pred EEEEecCCCCCCeEEEEECCC-CeE--EEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC
Q 001159 556 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
|+.+.. ..+.|..+++.. ++. ...+... . ....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999874 332 1222111 1 34558899999877776677899999976 5553322222222
Q ss_pred CCcceEEEc---CCCCEEEEEECC
Q 001159 633 PASPRLRFN---KEGSLLAVTTSD 653 (1135)
Q Consensus 633 ~~v~~~~~~---~~~~~l~~~~~d 653 (1135)
....+++|. |+++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 357899998 888777776654
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=5.5e-05 Score=76.09 Aligned_cols=194 Identities=10% Similarity=0.064 Sum_probs=127.3
Q ss_pred EEEEEecCCcceeEeccc--ceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTNSGLSLLALASN--AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~dg~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
..+.|+. +....+.+.. +.|+.+| +.++++...... ........+..++.
T Consensus 24 qGL~~~~-~~LyestG~~g~S~v~~vD----------------------~~tgkv~~~~~l-----~~~~fgeGi~~~~~ 75 (243)
T 3mbr_X 24 EGLFYLR-GHLYESTGETGRSSVRKVD----------------------LETGRILQRAEV-----PPPYFGAGIVAWRD 75 (243)
T ss_dssp EEEEEET-TEEEEEECCTTSCEEEEEE----------------------TTTCCEEEEEEC-----CTTCCEEEEEEETT
T ss_pred ccEEEEC-CEEEEECCCCCCceEEEEE----------------------CCCCCEEEEEeC-----CCCcceeEEEEeCC
Confidence 7889886 5544555544 3677664 455554433211 12222233333456
Q ss_pred EEEEEe--CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcC-----CC
Q 001159 855 YVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-----NR 927 (1135)
Q Consensus 855 ~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~ 927 (1135)
.|.... ++.+.++|..+.+.+.++...... ..+ .+ ++..|+++..++.|.++|..+.+.+.++.-.. ..
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TS-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EE-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--ee-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 565555 899999999999999999854322 334 45 45566666678899999999998887765322 24
Q ss_pred eEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCC-----CCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 928 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 928 i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
++.|.+. +|+..+..-.+..|.+.|..+++.+....+..+.... ....-.+.+|++|+++.|.+++..-=++|.
T Consensus 152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~ 230 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE 230 (243)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence 5677776 7777777767889999999999977765554332211 111345789999999888887666556665
Q ss_pred c
Q 001159 1003 S 1003 (1135)
Q Consensus 1003 ~ 1003 (1135)
+
T Consensus 231 v 231 (243)
T 3mbr_X 231 I 231 (243)
T ss_dssp E
T ss_pred E
Confidence 5
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.37 E-value=0.00029 Score=77.36 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=149.9
Q ss_pred ceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec
Q 001159 843 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345666656 445666666678888987665544443 344588999998455555555567889999988665444343
Q ss_pred CcCCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ec-CeE
Q 001159 923 GHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HE-SQI 998 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d-~~v 998 (1135)
.......++++.+.+ .++++-...+.|.+.+++..... ..+. .+ . .....++++|.+..|..+ .. +.|
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~--~l~~--~~-l---~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLLW--QS-L---EKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEC--TT-C---SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE--EEEe--CC-C---CCcceEEEecCcCeEEEeccCCCCEE
Confidence 333456889999754 55566667788999998764321 1111 11 1 345899999977777664 33 678
Q ss_pred EEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEE
Q 001159 999 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1077 (1135)
Q Consensus 999 ~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1135)
..++.++.....+.... ......+++++++..|+.+ ...+.|..++++.......+... ...+.+++
T Consensus 185 ~r~~~dG~~~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gia 252 (349)
T 3v64_C 185 EASSMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAIT 252 (349)
T ss_dssp EEEETTSCSCEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEE
T ss_pred EEEeCCCCCcEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEE
Confidence 88888665444433211 3456899999877665554 55678999998754322222211 13455566
Q ss_pred ecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.. ++.++++-...+.|...+..+++
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 63 44667776677888888855554
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.00029 Score=76.24 Aligned_cols=208 Identities=10% Similarity=-0.021 Sum_probs=132.5
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCC---ccEEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMT---FKVMTM-FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~---~~~~~~-~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
...+..++|++++..|..++ ++.|..+++.+ +..... +...-.....+++++.++++.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 45678999999887777776 58999999876 122222 3323345688999873555555556678999999875
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCC--CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
......+........++++.|++..|..+... +.|...+++..... .+.... ......++++++++.|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~---~~~~~~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTEN-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---EEECSS-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE---EEEECC-----CCCceEEEEeccCCEEEE
Confidence 44333333344568999999876655555433 67888887653311 111111 134679999998887777
Q ss_pred E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 993 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
+ ..+.|..+|..+.....+............+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 4678999999654443332211112345678885 46666677778899999988887665553
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.33 E-value=0.00089 Score=73.40 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=151.2
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~ 426 (1135)
+..+|.+..+++ .++++ ....|+..++....... +......+..++|++.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677766744 35543 24567777776543211 11123347899999866666555
Q ss_pred -eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEe
Q 001159 427 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1135)
Q Consensus 427 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1135)
...+.|..+++.+..... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 457889999988754222 22222234578999986664 4566666789999997654333333333456788999
Q ss_pred eccCCccEEEEEEcC-CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee
Q 001159 506 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1135)
Q Consensus 506 ~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1135)
+|.. +.++++-... +.|..++++...........-.....+++++++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 3455555555 78888887754433333333456789999998888887643 46789999986433322232
Q ss_pred cccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 585 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45667773 34444555567788888866666655554
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00061 Score=75.92 Aligned_cols=248 Identities=11% Similarity=-0.010 Sum_probs=152.0
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEE-
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~- 426 (1135)
.-.|.+..+.+ .++++ ....|+..++.++.... +......+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34566666644 34443 24578888877653221 11233457899999866655554
Q ss_pred eCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEee
Q 001159 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1135)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1135)
...+.|..+++.+..... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 457789999988754221 12222234567899886664 45566667788888876443333333334567889998
Q ss_pred ccCCccEEEEEEcC-CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeec
Q 001159 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1135)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1135)
|.. +.++++-... +.|..++++...........-.....++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 764 2444554444 78888888755444444444456889999998888887643 467899999864333222322
Q ss_pred ccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001159 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 586 ~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1135)
... ....+++. .+..+++-...+.|..++..+++.+..+..
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 222 45667773 344555555778888888777776666653
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.27 E-value=0.0018 Score=70.33 Aligned_cols=278 Identities=9% Similarity=0.014 Sum_probs=151.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
...+.+|.|.+++. ++++| ..|.| +...+.|+. |..... ........+.+|.|++ +..++
T Consensus 35 ~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~- 94 (327)
T 2xbg_A 35 TATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI- 94 (327)
T ss_dssp SSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE-
T ss_pred CCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE-
Confidence 34799999988876 56655 45654 333444431 111000 0112345688999986 44444
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeee-ecCCCCCeeEEE
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVC 504 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~ 504 (1135)
++.++.|.. ..+.++..........+...+..+.+.+++. .++.+. ++.|.. ....|+.-.. ...+...+..++
T Consensus 95 ~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEE
T ss_pred EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEE
Confidence 456664433 4444554442211112345678888887775 555554 554432 1123432222 234556788888
Q ss_pred eeccCCccEEEEEEcCCeE-EEEeCcCCCcee-EecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEE
Q 001159 505 PHHKESIQFIFSTAIDGKI-KAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1135)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i-~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1135)
+.+. +.+++.+ .+|.+ +-+|-. +..-. .-......+..+++.++++.++++. ++.+++.+...|+.-..
T Consensus 170 ~~~~--~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 170 RSPS--GEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp ECTT--SCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EcCC--CcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 8774 3556555 44444 333321 11111 1223445788899999988776552 56676664332433222
Q ss_pred eecc---cCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001159 583 YSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1135)
Q Consensus 583 ~~~~---~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 658 (1135)
+... ....+..+.+.+++..++++ .+|.| ++..+.++.-..+... .....++++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 11247888898877665555 56766 4556666665555422 112357889887555 4666778888776
Q ss_pred EE
Q 001159 659 LA 660 (1135)
Q Consensus 659 wd 660 (1135)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 65
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.27 E-value=0.00015 Score=74.14 Aligned_cols=202 Identities=11% Similarity=0.090 Sum_probs=131.9
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccccee
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 917 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~ 917 (1135)
...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 46799999999877666544 6889999998 888888742 235688899998 777766655678899998875432
Q ss_pred ---eEEec------CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC---Cceeceeeeec--CCCCCCCCCCceEEEE
Q 001159 918 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQA--PAGRQSPLVGETKVQF 983 (1135)
Q Consensus 918 ---~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~--~~~~~~~~~~v~~~~~ 983 (1135)
+.... .......+|+|+|+++.|.++.......+|.++. ...+. .... ..+ .........+++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~--i~~~~~~~~-~~~~~d~S~l~~ 180 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH--ISKDKALQR-QFTLDDVSGAEF 180 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE--EEECHHHHH-TCCSSCCCEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee--eecchhhcc-ccccCCceeEEE
Confidence 22221 1234568999999998777777655556665541 11011 1100 000 001145689999
Q ss_pred CCCCcEEEE-E-ecCeEEEEecCCceeeccCCCCCC------CCCEEEEEEeeCCCEEEEEeCCCeEEEEECC
Q 001159 984 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 984 s~dg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|....+.+ + ..+.+.++|.+++.+..+....+. -..-..|+|.++|+++++ ++-+.+++|.-.
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred cCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 998877666 4 457788899977765554433221 124578999999985554 677777777644
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.00029 Score=78.56 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=148.1
Q ss_pred EEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCc
Q 001159 845 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 924 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h 924 (1135)
.|.+..+ ..+|+.+....|+.+++.+......+. .......++|++.++.++++-...+.|+.+++..+.....+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3445445 445666666789999988765544443 34468899999845555555556788999998876544444333
Q ss_pred CCCeEEEEEcCCC-CeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe--c-CeEEE
Q 001159 925 QNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--E-SQISV 1000 (1135)
Q Consensus 925 ~~~i~~l~~s~d~-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d-~~v~v 1000 (1135)
.....+|++.+.+ .++++-...+.|.+.+++..... ..+. .+ . .....++++|.+..|+.+. . +.|..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--~l~~--~~-l---~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLLW--QS-L---EKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--EEEC--SS-C---SCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--Eeec--CC-C---CCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3456789998754 45556666778888888754311 1111 11 1 3468999999887777753 3 67888
Q ss_pred EecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEE-eCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEec
Q 001159 1001 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1079 (1135)
Q Consensus 1001 wd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1135)
++..+.....+.... ......++|+|++..|+.+ +..+.|..++++.......+... ...+.+++..
T Consensus 230 ~~~dG~~~~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~----------~~~P~giav~ 297 (386)
T 3v65_B 230 SSMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITVF 297 (386)
T ss_dssp EETTSCSCEEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS----------CSSEEEEEEE
T ss_pred EeCCCCCcEEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC----------CCCceEEEEE
Confidence 888555443332211 3456899999876665544 55678999998754322222211 1345566663
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1080 PSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1080 ~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
++.++++-...+.|..++..+++
T Consensus 298 --~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 298 --EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCC
T ss_pred --CCEEEEeeCCCCeEEEEECCCCc
Confidence 44677777777888888865554
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00076 Score=68.99 Aligned_cols=201 Identities=10% Similarity=0.086 Sum_probs=129.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 35799999999988788888889999999987 66544311 122 245778888999987777
Q ss_pred EeCCCeEEEEEeCCCCceeeeeEee------cccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---CCeeeeeec--
Q 001159 426 AFSKHIVHLYTYNPTGELRQHLEID------AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFE-- 494 (1135)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~l~------~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~-- 494 (1135)
.-.++.+.++++.....+....... ..+.....++|+|+++. |.++.......+|.+. .+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecch
Confidence 6677889999987765322111111 23445789999999985 3334333334444443 111122221
Q ss_pred -----CCCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCC---------CcEEEEEEcCCCCEEEEEe
Q 001159 495 -----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 495 -----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~ 560 (1135)
.+...+.+++++|.. +.+++.....+.+.++|.+. +.+..+.... .....++|.++|+..++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 134467899999975 46777777888899998764 3444333332 26689999999985555 3
Q ss_pred cCCCCCCeEEEEEC
Q 001159 561 TSKEGESHLVEWNE 574 (1135)
Q Consensus 561 ~~~~~~~~i~~wd~ 574 (1135)
. .+.++.+..
T Consensus 242 E----~n~~y~f~~ 251 (255)
T 3qqz_A 242 E----PNRFYRFTP 251 (255)
T ss_dssp T----TTEEEEEEC
T ss_pred C----CceEEEEEe
Confidence 2 445666653
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.00018 Score=81.37 Aligned_cols=247 Identities=12% Similarity=0.062 Sum_probs=145.6
Q ss_pred ceEEEEeec-CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeC-CC----cEEEEEcccc
Q 001159 843 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 915 (1135)
Q Consensus 843 ~i~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~-dg----~v~iwd~~~~ 915 (1135)
....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|+++.. ++ .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456789998 466666666 5889999998766543 333556688999999 7775555554 22 3444443 33
Q ss_pred eee--EEecCcCCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 916 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 916 ~~~--~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
... ..+. ......+++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2232 133467889999 77777777778899999998765311 1111111 23578999999996666
Q ss_pred E--ecCeEEEEecCC--cee---eccCC---CCCC---------CCCEE-EEEEe--------eCCCEEEEEeCCCeEEE
Q 001159 993 V--HESQISVYDSKL--ECS---RSWSP---KDAL---------PAPIS-SAIYS--------CDGLLVYAGFCDGAIGV 1044 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~--~~~---~~~~~---~~~h---------~~~i~-~~~~s--------~d~~~l~~~~~dg~I~v 1044 (1135)
+ ..+.|..++..+ ..+ ..+.. ..+. -..-. .++.. ++|.++++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 578899988732 111 11110 0000 11123 45553 34666666667788999
Q ss_pred EECCCceeeeeeCCce-ecc---c---cccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1045 FDAETLRFRCRIGPSA-YIP---T---YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~-~~~---~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
++ .+|.......... ... . .....-..|..++++|+++.++++-...+.|+..++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4565443221100 000 0 0001113578899988556677776667788887764
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.00024 Score=80.39 Aligned_cols=248 Identities=8% Similarity=0.007 Sum_probs=147.8
Q ss_pred ceEEEEeecC--CCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEcccc
Q 001159 843 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 915 (1135)
Q Consensus 843 ~i~~l~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~d---g-~v~iwd~~~~ 915 (1135)
....++++|+ +..|..+. .+.|+.+|..+++.... .........++|++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 45565555 58899999987766544 33455689999999 77744443311 1 2333333222
Q ss_pred ee-eEEecCcCCCeEEEEEcC-CCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 916 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 916 ~~-~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.. ...+. .......++++| +|.++++-..++.|+.++..++...... ..... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01222 234467789999 7777777667888999998876532211 11111 1 123479999999966664
Q ss_pred --ecCeEEEEecC--Ccee---eccCC---CCC---------CCCCEEEEEE---------eeCCCEEEEEeCCCeEEEE
Q 001159 994 --HESQISVYDSK--LECS---RSWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1045 (1135)
Q Consensus 994 --~d~~v~vwd~~--~~~~---~~~~~---~~~---------h~~~i~~~~~---------s~d~~~l~~~~~dg~I~vw 1045 (1135)
..+.|+.++.. ...+ ..+.. ..+ .-.....+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 46789888763 1211 11110 000 1223567999 7778777777778899999
Q ss_pred ECCCceeeeeeCCcee-----cccc---ccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecC
Q 001159 1046 DAETLRFRCRIGPSAY-----IPTY---AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1101 (1135)
Q Consensus 1046 d~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~ 1101 (1135)
+. +|... ++..... ...+ ....-..|..++++|.+++++++-...+.|+..+++
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56443 3322110 0000 001124577899996577777777777888888764
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.23 E-value=0.00099 Score=74.55 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=136.0
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCc----cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
...+..++|++.+..|..++ .+.|+.+++... .....+.........+++.+.++++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 56788999999877777776 688999998752 222333334456789999974455555555678999999876
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEc-C-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-A-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
......+........+|++.|.+.+|..+. . .+.|...+++...... .+.. + ......++++++++.|+.
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C----CCceEEEEEEeCCCEEEE
Confidence 544444444445689999999766555544 2 3678888887643211 1111 1 134689999998888877
Q ss_pred E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 993 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
+ ..+.|..+|+++.....+...........++++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 467899999865544443322112334567777 344566666777889999988887776654
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.23 E-value=0.0029 Score=68.30 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=143.3
Q ss_pred EEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC---Ceeee-eecCCCC
Q 001159 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQY-TFEGHEA 498 (1135)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~~~~h~~ 498 (1135)
|+.+.. ..|+..|+.+..... .+ .....+..++|.+++.. ++++-..++.|..+++.. +.... .+...-.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 444433 458888988765332 22 23456889999987764 556666788999999875 12222 2322224
Q ss_pred CeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCe
Q 001159 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1135)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1135)
....+++.+.. +.+.++-...+.|.+.+++.................++++|.+..|+.+.. ...+.|...++. |.
T Consensus 78 ~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 78 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-GV 153 (316)
T ss_dssp CCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-SC
T ss_pred CcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-CC
Confidence 55788887643 255566677889999998754444344434457789999998777776542 113678888875 44
Q ss_pred EEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001159 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1135)
Q Consensus 579 ~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 657 (1135)
....+....-.....+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33333222222567899999877777655 5679999999754333333322222245677775 355555556678888
Q ss_pred EEEcCCC
Q 001159 658 ILANSDG 664 (1135)
Q Consensus 658 iwd~~~~ 664 (1135)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 8887666
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=0.0003 Score=86.29 Aligned_cols=201 Identities=5% Similarity=-0.040 Sum_probs=114.6
Q ss_pred cCCCc-ceEEEEEc-CCCCeEEEEeC-CC----eEEEEEeCCC-CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC
Q 001159 405 NDAAI-SVNRCVWG-PDGLMLGVAFS-KH----IVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1135)
Q Consensus 405 ~~h~~-~V~~v~~s-pd~~~las~~~-dg----~i~iwd~~~~-~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d 476 (1135)
.+|.- .+...+|| |||++||.+.. +| +|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34553 78899999 99999987643 22 5999999998 53221 1211 1346899999985 3333333
Q ss_pred -----CcEEEEEcCCCeee--eeec-CCCCCeeEEEeeccCCccEEEEEEc---CCeEEEEeCcCCC-ce--eEec-CCC
Q 001159 477 -----KMIKVWDVVAGRKQ--YTFE-GHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDYD-APG 541 (1135)
Q Consensus 477 -----~~i~iwd~~~~~~~--~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~-~~~ 541 (1135)
..|+++++.++... ..+. ........+.|+|++ ++|+..+. ...|.++|+.+.. .. ..+. ...
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 36888888776422 2332 223345677887754 66665552 3468888887753 22 3332 233
Q ss_pred CcEEEEEEcCCCCEEEEEecCC-CCCCeEEEEECCCC-eEEE-EeecccCCceeEEEecCCCCEE-EEEeCCCe--EEEE
Q 001159 542 NWCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQ--IKFW 615 (1135)
Q Consensus 542 ~~i~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~i~~s~~~~~l-~~~~~dg~--i~iw 615 (1135)
....++.|+. |..|+..+... .+...|..+|+.++ .... .+....+..+..+.+. ++.| ++...++. |+++
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 3444554433 66666554321 24568888898753 3222 2332222234555554 4444 45566775 4555
Q ss_pred EC
Q 001159 616 DM 617 (1135)
Q Consensus 616 d~ 617 (1135)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.20 E-value=0.005 Score=66.74 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=112.8
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEE-EEc--cccee
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDEV 917 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~lasg~~dg~v~i-wd~--~~~~~ 917 (1135)
..+..+++.++++.++++.+|.|.. ..+.++.-... ..+...+..+++.| ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 4567788888888777776665422 12223322222 34556789999999 788877664 454444 332 23333
Q ss_pred eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCe
Q 001159 918 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 997 (1135)
Q Consensus 918 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~ 997 (1135)
+. ......+..+++++++..++ ++.+|.+++++.+.++.-. .+... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456789999999987665 4567877777533232111 11111 000013478899999999888888887
Q ss_pred EEEEec-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEEC
Q 001159 998 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1047 (1135)
Q Consensus 998 v~vwd~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~ 1047 (1135)
|. +.. .+..-........+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 73 333 3333222221111234678899987666 455568898776653
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=8e-05 Score=90.06 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=127.4
Q ss_pred ceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEe-CC-----CcEEEEEcc
Q 001159 843 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGM-ED-----SSVQIYNVR 913 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~-~d-----g~v~iwd~~ 913 (1135)
...++++..+|+++++|+ ++.+.+||..+.+-...-..+..+ -.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344678889999999998 468999998876433221112222 24556667 788999998 44 579999998
Q ss_pred cceeeEEe----cCcCCCeEEEEEcCCCCeEEEEcCCC---------cEEEEeCCCCceeceeeeecCC-CCCCCCCCce
Q 001159 914 VDEVKTKL----KGHQNRITGLAFSPTLNALVSSGADA---------QLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGET 979 (1135)
Q Consensus 914 ~~~~~~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~---------~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~ 979 (1135)
+++-...- ......-...++..+++.++.++.|+ .+..||..+............. +.......-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 76532210 00000000012234556656665444 4678888776532211111000 0000001224
Q ss_pred EEEECC-CCcEEEEEe-cC-----------eEEEEecCCceeeccC-CCCCCCCCEEEEEEeeCCCEEEEEeCC------
Q 001159 980 KVQFHN-DQTHLLVVH-ES-----------QISVYDSKLECSRSWS-PKDALPAPISSAIYSCDGLLVYAGFCD------ 1039 (1135)
Q Consensus 980 ~~~~s~-dg~~l~~~~-d~-----------~v~vwd~~~~~~~~~~-~~~~h~~~i~~~~~s~d~~~l~~~~~d------ 1039 (1135)
.+.|.. +++.++.++ ++ .|.+||.....-.... ........-.+++..++|+++++|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 455543 677777743 21 5778887332222221 010112222355667899999999865
Q ss_pred -----CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEec
Q 001159 1040 -----GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS 1091 (1135)
Q Consensus 1040 -----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 1091 (1135)
..+.+||..+++.... .. .+. .. ...-++...| |+++++.|+.
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~-~~---~~~---~R-~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQ-NP---NSI---VR-VYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEEC-CC---CSS---CC-CTTEEEEECT-TSCEEEEECC
T ss_pred CCCcccceEEEcCCCCceeec-CC---CCC---cc-ccccHhhcCC-CcEEEecCCC
Confidence 4689999988764431 11 111 11 1222334456 7889999885
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.10 E-value=0.00033 Score=79.16 Aligned_cols=244 Identities=11% Similarity=0.089 Sum_probs=137.2
Q ss_pred EEEEEecC--CcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCC
Q 001159 777 VRLIYTNS--GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 854 (1135)
Q Consensus 777 ~~~~~s~d--g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~ 854 (1135)
..+++.|+ +..|.++...+.|+.++ +.++.+... ... ......++++++|+
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id----------------------~~~g~v~~~-~~~----~~~P~giavd~dG~ 194 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVD----------------------FVNQYVDIK-TTN----IGQCADVNFTLNGD 194 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEE----------------------TTTTEEEEE-CCC----CSCEEEEEECTTCC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEE----------------------CCCCEEEEe-ecC----CCCccEEEECCCCC
Confidence 78899984 33355554435565554 333333221 111 45688999999999
Q ss_pred EEEEEeCC----e-EEEEECCCccE-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEe-c-CcCC
Q 001159 855 YVMSASGG----K-VSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-K-GHQN 926 (1135)
Q Consensus 855 ~la~~~dg----~-i~vwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l-~-~h~~ 926 (1135)
++++...+ . +...+...+.. ...+. .......++++|+++.+.++-..++.|+.++..++.....+ . +...
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 44443322 2 33333322211 11121 23345678899855666555556788999998877653332 2 1122
Q ss_pred CeEEEEEcCCCC-eEEEEcCCCcEEEEeCCC--CceeceeeeecC---CCCC------CCCCCceEEEE---------CC
Q 001159 927 RITGLAFSPTLN-ALVSSGADAQLCMWSIDK--WEKLKSRFIQAP---AGRQ------SPLVGETKVQF---------HN 985 (1135)
Q Consensus 927 ~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~--~~~~~~~~~~~~---~~~~------~~~~~v~~~~~---------s~ 985 (1135)
.-..|+|+|+++ ++++-...+.|..++.+. +.......+... .+.. ........+++ .+
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 235799999998 555556678899988763 221100111110 0100 00123567999 77
Q ss_pred CCcEEEE-EecCeEEEEecCCceeeccCCC--------------CCCCCCEEEEEEe-eCCCEEEEEeCCCeEEEEECC
Q 001159 986 DQTHLLV-VHESQISVYDSKLECSRSWSPK--------------DALPAPISSAIYS-CDGLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 986 dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~--------------~~h~~~i~~~~~s-~d~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|.++++ ..++.|+.++.++......-.. ...-.....++++ ++|.++++=..++.|+.++++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7777766 4678899998755332211100 0012346789999 677766666677888888764
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.00085 Score=75.86 Aligned_cols=243 Identities=9% Similarity=0.046 Sum_probs=136.9
Q ss_pred EEEEEec-CCcceeEecccceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecCCCE
Q 001159 777 VRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 855 (1135)
Q Consensus 777 ~~~~~s~-dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~dg~~ 855 (1135)
..++++| ++..|.+....+.|+.+++. ++.+... ... ......++++++|++
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~----------------------~~~v~~~-~~~----~~~P~~ia~d~~G~~ 192 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFE----------------------KEYVSTV-YSG----LSKVRTICWTHEADS 192 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETT----------------------TTEEEEE-ECC----CSCEEEEEECTTSSE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECC----------------------CCEEEEE-ecC----CCCcceEEEeCCCCE
Confidence 7889997 45556666554666666432 2222111 111 556789999999996
Q ss_pred EEEEe--CC----eEEEEECCCccEE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec-CcCC
Q 001159 856 VMSAS--GG----KVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQN 926 (1135)
Q Consensus 856 la~~~--dg----~i~vwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~ 926 (1135)
|.++. ++ .+.+++.. +... ..+. .......++++|+++.++++-..++.|+.++..++....... +...
T Consensus 193 lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 66665 22 24444433 3221 2232 123457788999556666666677899999998766422222 1223
Q ss_pred CeEEEEEcCCCC-eEEEEcCCCcEEEEeCCCC--ceeceeeeecC---CCCCC------CCCCce-EEEEC--------C
Q 001159 927 RITGLAFSPTLN-ALVSSGADAQLCMWSIDKW--EKLKSRFIQAP---AGRQS------PLVGET-KVQFH--------N 985 (1135)
Q Consensus 927 ~i~~l~~s~d~~-~l~s~~~D~~i~iwd~~~~--~~~~~~~~~~~---~~~~~------~~~~v~-~~~~s--------~ 985 (1135)
....|+|+|+|+ ++++-...+.|..++.+.. +......+... .+... ...... .++.. +
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~ 350 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD 350 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence 478999999999 5555567788999877642 11000111111 01000 001223 45553 4
Q ss_pred CCcEEEE-EecCeEEEEecCCceeeccCC------C--C------CCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEECC
Q 001159 986 DQTHLLV-VHESQISVYDSKLECSRSWSP------K--D------ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAE 1048 (1135)
Q Consensus 986 dg~~l~~-~~d~~v~vwd~~~~~~~~~~~------~--~------~h~~~i~~~~~s~d-~~~l~~~~~dg~I~vwd~~ 1048 (1135)
+|.+.++ ...+.|+.++.++......-. . + ..-.....++++++ +.++++-..+..|+.++++
T Consensus 351 ~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 351 EYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4666555 457789888865533222110 0 0 01225789999995 6666665667788888764
No 292
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.005 Score=68.78 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=146.2
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC----eeeeeecCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1135)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888887654322 2334567889999987764 4555566788999997652 2222333344
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567788887643 256666667889999998765554455444556889999998777776532 12467888887643
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
.........-. ....+++++++..|+.+. ..+.|..+|++..................++++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33222222222 567899998887777764 5678999998765544444432222344567773 33455555667788
Q ss_pred EEEEcCCC
Q 001159 657 KILANSDG 664 (1135)
Q Consensus 657 ~iwd~~~~ 664 (1135)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887666
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0013 Score=70.71 Aligned_cols=205 Identities=9% Similarity=0.026 Sum_probs=133.5
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCccEE-EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceee
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 918 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~ 918 (1135)
..+..++|++.+..|...+ .+.|..+++.+.... ..+...-.....+++.+.++.+.++-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 4567899999777777666 688999998876322 2222233456789998745566666566789999998754333
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEc--CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--e
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 994 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~ 994 (1135)
..+........++++.|.+..|..+. ..+.|...+++..... ..+.. + ......++++++++.|..+ .
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~~--~----l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--IIINS--E----IYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE--EEECS--S----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE--EEEEC--C----CCCccEEEEeccCCEEEEEECC
Confidence 33334455689999998766555554 3567888887653311 11111 1 1345799999988877775 5
Q ss_pred cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 995 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 995 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
.+.|..+|+.+.....+... .......+++. .+.++++-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCSCEEEECS--CCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCceEEEecC--CCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 67899999855444333221 13445677875 34566666678899999998888766654
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=0.0018 Score=73.07 Aligned_cols=253 Identities=7% Similarity=-0.017 Sum_probs=148.8
Q ss_pred ceEEEEeec-CCCEEEEEe--CCeEEEEECCCccEEEEEeCC---CCCeEEEEE-------ecCCCcEEEEEeCCC----
Q 001159 843 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 905 (1135)
Q Consensus 843 ~i~~l~~s~-dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h---~~~v~~l~~-------sp~~~~~lasg~~dg---- 905 (1135)
....|+|+| ++..|.++. .+.|++.|++++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555554 367999999887765544332 235899999 99 777566565543
Q ss_pred ---cEEEEEccc-ceee-----EEecCcCCCeEEEEEcCC-CCeEEEEcCCCcEEEEeCC-------CCce------e--
Q 001159 906 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 960 (1135)
Q Consensus 906 ---~v~iwd~~~-~~~~-----~~l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iwd~~-------~~~~------~-- 960 (1135)
.|.+++... ++.. ..+.. .....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12221 123567889994 5666677788889999998 4442 0
Q ss_pred --ceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecCC--cee---eccCC---CCCC---------CC
Q 001159 961 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL--ECS---RSWSP---KDAL---------PA 1019 (1135)
Q Consensus 961 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~~--~~~---~~~~~---~~~h---------~~ 1019 (1135)
.........+ .....++|+|+|++|.++ ....|+.++..+ ..+ ..+.. ..++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011111111 235789999999965554 577888876622 211 11110 0110 12
Q ss_pred CEE-EEEEe-------eCCCEEEEEeCCCeEEEEECCCceeeeeeCCcee------------cc--ccccCCCCccEEEE
Q 001159 1020 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY------------IP--TYAVSNTAHPLVIA 1077 (1135)
Q Consensus 1020 ~i~-~~~~s-------~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~ 1077 (1135)
... .++.. ++|.++++=..+.+|+.++ .+|. +.++.+... .. ......-..|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 234 45554 5667777777788999999 4563 444432210 00 00011224577888
Q ss_pred ecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1078 PHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1078 ~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+++++++++++=...+.|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 888446777777777789999886544
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.97 E-value=0.01 Score=63.69 Aligned_cols=237 Identities=10% Similarity=0.024 Sum_probs=143.8
Q ss_pred EEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEE-EEeCCCeEEEEEeCC
Q 001159 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNP 439 (1135)
Q Consensus 361 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~la-s~~~dg~i~iwd~~~ 439 (1135)
||++. ...|+..++.+...... . +......+.+++|.+.+..|. +-...+.|..+++.+
T Consensus 7 ll~~~--~~~I~~i~l~~~~~~~~--~----------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g 66 (318)
T 3sov_A 7 LLYAN--RRDLRLVDATNGKENAT--I----------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66 (318)
T ss_dssp EEEEC--EEEEEEEETTCTTSCCE--E----------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTS
T ss_pred EEEEc--cCeEEEEECCCCceEEE--E----------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccC
Confidence 44433 56899999876531110 0 111223567899998655554 445578899999887
Q ss_pred CCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccCCccEEEEEE-
Q 001159 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA- 518 (1135)
Q Consensus 440 ~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s- 518 (1135)
+..... .+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.|.. ..|+.+.
T Consensus 67 ~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~ 141 (318)
T 3sov_A 67 TESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDW 141 (318)
T ss_dssp SSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEEC
T ss_pred CCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEec
Confidence 532111 12222235678999876664 45566667899999976443222233344567889998764 3444444
Q ss_pred -cCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEec
Q 001159 519 -IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1135)
Q Consensus 519 -~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s 597 (1135)
..+.|...+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+... ....+++.
T Consensus 142 ~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~ 217 (318)
T 3sov_A 142 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLF 217 (318)
T ss_dssp SSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEe
Confidence 3578888887654433333333456789999998888887643 467899999864332222222222 45567765
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001159 598 TTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1135)
Q Consensus 598 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1135)
. +..+++-...+.|..++..+++....+.
T Consensus 218 ~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 218 E-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred C-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 3 3445555567888888887777666554
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0035 Score=70.66 Aligned_cols=253 Identities=11% Similarity=0.068 Sum_probs=141.9
Q ss_pred EEEEEec-CCcceeEecc-cceeeeEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEe-----
Q 001159 777 VRLIYTN-SGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL----- 849 (1135)
Q Consensus 777 ~~~~~s~-dg~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~----- 849 (1135)
..++|.| +...|+++.. .+.|++.|+ .++.+....-.+... ......++|
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~-~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIP-TNRIRSIAFNKKIE 198 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSS-CSBEEEEEECCCBT
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccc-cCCCcEEEEeeccc
Confidence 7899998 3554555544 355555543 333322211111001 346889999
Q ss_pred --ecCCCEEEEEe-CC-------eEEEEECCC-ccEE-----EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 850 --SKNDSYVMSAS-GG-------KVSLFNMMT-FKVM-----TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 850 --s~dg~~la~~~-dg-------~i~vwd~~~-~~~~-----~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
+++|++|.++. .+ .|.+++... +... ..+.. ......++++|+++.++++-..++.|+.+|+.
T Consensus 199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 99999777776 32 266676443 2221 12221 12345788999666666667778899999997
Q ss_pred -------ccee-----------eEE-ec-CcCCCeEEEEEcCCCCe-EEEEcCCCcEEEEeCCCCc-eec--eeeeec--
Q 001159 914 -------VDEV-----------KTK-LK-GHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWE-KLK--SRFIQA-- 967 (1135)
Q Consensus 914 -------~~~~-----------~~~-l~-~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iwd~~~~~-~~~--~~~~~~-- 967 (1135)
++.. ... +. +.....+.|+|+|+|++ +++-.....|+.++.+... .+. ......
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g 357 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence 5543 112 11 22344689999999995 5555667788886654321 110 011111
Q ss_pred CCCCCC------CCCCce-EEEEC-------CCCcEEEE-EecCeEEEEecCCceeeccCCC---------------C--
Q 001159 968 PAGRQS------PLVGET-KVQFH-------NDQTHLLV-VHESQISVYDSKLECSRSWSPK---------------D-- 1015 (1135)
Q Consensus 968 ~~~~~~------~~~~v~-~~~~s-------~dg~~l~~-~~d~~v~vwd~~~~~~~~~~~~---------------~-- 1015 (1135)
..+... ...... .++.. ++|.++++ ..+.+|+.++.++. +..+... +
T Consensus 358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~ 436 (496)
T 3kya_A 358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGD 436 (496)
T ss_dssp BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEE
T ss_pred CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCC
Confidence 111110 001233 44554 55666666 56788999987553 2222110 0
Q ss_pred ----CCCCCEEEEEEeeC-CCEEEEEeCCCeEEEEECCCceeee
Q 001159 1016 ----ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAETLRFRC 1054 (1135)
Q Consensus 1016 ----~h~~~i~~~~~s~d-~~~l~~~~~dg~I~vwd~~~~~~~~ 1054 (1135)
+.-.....|+++++ |.++++=..+..|+.++++......
T Consensus 437 ~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 437 LREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred chhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 11234678999997 7777766778899999988755443
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.90 E-value=0.005 Score=74.57 Aligned_cols=208 Identities=10% Similarity=-0.013 Sum_probs=132.2
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCc----cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 914 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~ 914 (1135)
...+..++|++.+..|..+. .+.|+.+++... .....+.........|++.+.++++.++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45678999999777777666 588999998753 222333334456778999984445556556678999999885
Q ss_pred ceeeEEecCcCCCeEEEEEcCCCCeEEEEc-CC-CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEE
Q 001159 915 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 992 (1135)
Q Consensus 915 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 992 (1135)
......+........+|++.|.+.+|..+. .+ +.|...+++...... .+.. . ......|++++.+..|++
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv~~---~---l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---N---IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS---S---CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EEeC---C---CCCceEEEEecCCCeEEE
Confidence 543333444455689999999865555554 23 678888887644211 1111 1 134689999988887777
Q ss_pred E--ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 993 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 993 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
+ ..+.|..+++.+.....+...........+|++.. +.++++-...+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5 46789999986555444432211123345677643 3455555677889999988886665553
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=7.7e-05 Score=90.00 Aligned_cols=208 Identities=11% Similarity=-0.011 Sum_probs=127.8
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCC----ccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 915 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~ 915 (1135)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566789999888887776 57899999875 22222222122345678888635566665556789999998755
Q ss_pred eeeEEecCcCCCeEEEEEcCCCCeEEEEcC-C-CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 916 EVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 916 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
.....+........+|++.|++.+|+.+.. . +.|...+++..... ..+.. . ......++|+|+++.|+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~~-~-----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTE-N-----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESCS-S-----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEeC-C-----CCCccEEEEeccCCEEEEE
Confidence 433333333345788999997655554432 2 67877777643211 11111 0 1345789999987777664
Q ss_pred --ecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 994 --HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 994 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
..+.|.++++.+.....+............|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 567899999855443333321111122345566544 5566666778999999999988877754
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.78 E-value=0.023 Score=68.76 Aligned_cols=232 Identities=8% Similarity=-0.001 Sum_probs=143.4
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC----eeeeeecCCC
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1135)
+|+.+ ....|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 34333 3455777777764332 23334556889999986664 5556666788999997652 2223333344
Q ss_pred CCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCC
Q 001159 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1135)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1135)
.....|++.+.. +.+.++-...+.|.+.+++.......+.........|++.|.+.+|+..-. .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 556788887654 256666677889999998865544444445556889999998777776532 11367888888643
Q ss_pred eEEEEeecccCCceeEEEecCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001159 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1135)
Q Consensus 578 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 656 (1135)
. ...+....-.....|++++.+..|+.+. ..+.|...+++.......+..........+|++..+ .++++-...+.|
T Consensus 548 ~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI 625 (791)
T ss_dssp C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEE
T ss_pred c-eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEE
Confidence 3 3333322222678899998777777664 557899999876555544443322223456666432 344444456777
Q ss_pred EEEEcCCC
Q 001159 657 KILANSDG 664 (1135)
Q Consensus 657 ~iwd~~~~ 664 (1135)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 77776666
No 300
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.73 E-value=2.5e-05 Score=62.62 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCcchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCc
Q 001159 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1135)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1135)
|+.++.||++||..||.|.||..||.+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 889999999999999999999999999999999864
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.73 E-value=0.06 Score=55.73 Aligned_cols=233 Identities=17% Similarity=0.156 Sum_probs=151.5
Q ss_pred EEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceeeEEecCc
Q 001159 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 924 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 924 (1135)
+.-.+|..+.+|.-...++.|+|+++.+.++.+.- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.-|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 45668999988888888999999999988888774 34666666654 35666665 45799999974 3566666555
Q ss_pred C----CCeEEEEEcCCCCeEEEEcC-------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-----c
Q 001159 925 Q----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-----T 988 (1135)
Q Consensus 925 ~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-----~ 988 (1135)
. ..|..-..+++.++++..|- .|.+.+|..+.+. -+...||. ..-..+-.+| .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGha-----a~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHA-----ASFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSE-----EEEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeee-----eeeEEEecCCCCCCce
Confidence 3 35778888999998886652 3678899888754 33445543 1122233333 2
Q ss_pred EEEEEe----cCeEEEEec-CC---c------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeee
Q 001159 989 HLLVVH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1054 (1135)
Q Consensus 989 ~l~~~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~ 1054 (1135)
+++.+. .+++.|-++ .. . .+..+.+.+.-..---++..|+.-..+..-+.-|.|++||++||.+++
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 333332 268888888 22 1 122233333334555688888888888888899999999999999998
Q ss_pred eeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1055 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
.-+... ......+..... .=++.....|.|.--.+.+..
T Consensus 296 ~nrIS~----------d~iF~ta~~~~~-~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 296 MNRISG----------ETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEECCS----------SCEEEEEEEGGG-TEEEEEETTCEEEEEEECTTT
T ss_pred EeccCC----------CceEEecccCCC-CcEEEEcCCCEEEEEEECccc
Confidence 655331 222233333322 234555688887776666544
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.0089 Score=63.35 Aligned_cols=196 Identities=10% Similarity=0.193 Sum_probs=122.2
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEEEeCCCCCeEEEEEecC---CCc---EEEEEe-C--CCcEEEEEcc--cceeeE
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DNN---IIAIGM-E--DSSVQIYNVR--VDEVKT 919 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~---~~~---~lasg~-~--dg~v~iwd~~--~~~~~~ 919 (1135)
...+++... .+.+.|||+ +|+.++.+.. +.++.+.+-|. +++ ++++.. . +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 444544444 688999999 8888888853 66777777661 121 233333 3 5789999774 333 44
Q ss_pred EecC------cC-CCeEEEEE--cCC-CC-eEEEEcCCCcEEEEeCCC---CceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 920 KLKG------HQ-NRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 920 ~l~~------h~-~~i~~l~~--s~d-~~-~l~s~~~D~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
.+.. .. ..+..+|+ +|. ++ +++....+|.+..|++.. +. ...+.++...-. ..+-.|+..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56778888 775 44 677888899999999843 21 222223332211 3567889999
Q ss_pred CCcEEEEEe-cCeEEEEecC------CceeeccCCCCCCCCCEEEEEE--eeCCC-EEEEEe-CCCeEEEEECC-Cceee
Q 001159 986 DQTHLLVVH-ESQISVYDSK------LECSRSWSPKDALPAPISSAIY--SCDGL-LVYAGF-CDGAIGVFDAE-TLRFR 1053 (1135)
Q Consensus 986 dg~~l~~~~-d~~v~vwd~~------~~~~~~~~~~~~h~~~i~~~~~--s~d~~-~l~~~~-~dg~I~vwd~~-~~~~~ 1053 (1135)
...+|+++. +..|..|+.. ...+..+. ...-...+..|++ .++++ ||++++ .+.+..|||.. +.+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 888888874 4445555542 22332222 1111346888888 45666 666665 67799999997 77777
Q ss_pred eeeC
Q 001159 1054 CRIG 1057 (1135)
Q Consensus 1054 ~~~~ 1057 (1135)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.67 E-value=0.0061 Score=64.59 Aligned_cols=185 Identities=12% Similarity=0.136 Sum_probs=118.6
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeeccC--Ccc---EEEEEEc---CCeEEEEeCcCCC-ceeEecC
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTAI---DGKIKAWLYDYLG-SRVDYDA 539 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~~---~l~s~s~---dg~i~iwd~~~~~-~~~~~~~ 539 (1135)
+++.....+-+.++|+ +|+.++.+.. +.++.+..-|.- .|. ++++... +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666788999998 9999988864 567777655521 111 2333333 5789999774222 2333311
Q ss_pred ------CC-CcEEEEEE--cCC-CC-EEEEEecCCCCCCeEEEEEC-------CCCeEEEEeecccCCceeEEEecCCCC
Q 001159 540 ------PG-NWCTMMAY--SAD-GT-RLFSCGTSKEGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1135)
Q Consensus 540 ------~~-~~i~~~~~--s~~-~~-~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~i~~s~~~~ 601 (1135)
.. ..+..+++ ++. ++ ++++.. +++.+..|++ .+++.+++|.... .+..+...+...
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g 192 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYG 192 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCC
Confidence 11 45666777 774 44 344443 3678888887 2446778887654 577888899889
Q ss_pred EEEEEeCCCeEEEEECC-----CCceEEEEeCCCCCCCcceEEE--cCCCC-EEEEEE-CCCcEEEEEcC
Q 001159 602 RFLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANS 662 (1135)
Q Consensus 602 ~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~ 662 (1135)
+|+.+-++.-|..++.+ +++.+..+....-...+..+++ .++++ +|++++ .++++.+||..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999998777777754 3455555533222235777877 45555 566555 57799999986
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.65 E-value=0.068 Score=55.34 Aligned_cols=238 Identities=11% Similarity=0.072 Sum_probs=146.7
Q ss_pred EEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001159 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~~dg 430 (1135)
+.-.+|..+ ++|.=. ...+.|+|+++.+++.... -...|..=.|-.+. .|+..+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCCC-eEEEEc-CC
Confidence 445588887 666554 6799999999988776421 12456666776544 444443 35
Q ss_pred eEEEEEeCCCCceeeeeEeeccc----CCEEEEEEecCCCeEEEEEEc------CCCcEEEEEcCCCeeeeeecCCCCCe
Q 001159 431 IVHLYTYNPTGELRQHLEIDAHV----GGVNDIAFAHPNKQLCIVTCG------DDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1135)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~l~~h~----~~v~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1135)
.|+-|++....... ..+..|. ..|..-.-+++.++ ++++|- -.|.+.+|..+.+. -+.+.||.+.-
T Consensus 127 aVyHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEE
T ss_pred cEEEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecccc-cceeeeeeeee
Confidence 69999998644322 2344443 35777788888886 333332 23678899966554 46778887665
Q ss_pred eEEEeeccCCc-cEEEEEEcC---CeEEEEeCcCC---Cce-----eEe--cC--CCCcEEEEEEcCCCCEEEEEecCCC
Q 001159 501 YSVCPHHKESI-QFIFSTAID---GKIKAWLYDYL---GSR-----VDY--DA--PGNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 501 ~~i~~~~~~~~-~~l~s~s~d---g~i~iwd~~~~---~~~-----~~~--~~--~~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
..+.+...... .+++.+... +.+++-++... ... ..+ .. ...-..++..|+.-..++..+
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT---- 278 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---- 278 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE----
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe----
Confidence 55544322211 233333332 68999988553 111 111 11 133456777888777777765
Q ss_pred CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc
Q 001159 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1135)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1135)
+-|.|++||+.+|.++..-+-..+ .|...+-+....-+++....|.|.--.++..+
T Consensus 279 K~G~ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CCcEEEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 388999999999999887776555 55555554444556666677776666555544
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.61 E-value=0.0096 Score=62.52 Aligned_cols=205 Identities=11% Similarity=0.059 Sum_probs=126.7
Q ss_pred CCceEEEEeecCCCEEEEEe--CCeEEEEECCCccEEEE-EeC----CCC--CeEEEEE---ecCCCcEEEEEeC-----
Q 001159 841 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMS----PPP--AATFLAF---HPQDNNIIAIGME----- 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~-~~~----h~~--~v~~l~~---sp~~~~~lasg~~----- 903 (1135)
.....+++|.+....+..++ .++|..||...+..... +.+ ... .+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 34456789988666666666 89999999986654333 222 111 3578999 68 6778776442
Q ss_pred --------CCcEEEEEcc---cceeeEEec--CcC-----------CCeEEEEEcCCCCeEEEEcCC-CcEEEEeCCCCc
Q 001159 904 --------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWE 958 (1135)
Q Consensus 904 --------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~i~~l~~s~d~~~l~s~~~D-~~i~iwd~~~~~ 958 (1135)
+..|..||+. +++.+.... ... .....++..++|+..++.+.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 787665443 111 247899999999999998877 777666665432
Q ss_pred eeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-ecCeEEEEecCC-ce--eeccC-CCCCCCCCEEEE-EEeeCCCE
Q 001159 959 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL-EC--SRSWS-PKDALPAPISSA-IYSCDGLL 1032 (1135)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~v~vwd~~~-~~--~~~~~-~~~~h~~~i~~~-~~s~d~~~ 1032 (1135)
.....+....... ....+.++++|||..|++. ..+.+..+|+.. .. +..-. ...+.......+ ..-.+|+.
T Consensus 171 -~~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 -VSTFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp -EEEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred -EeeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 2222222221111 2456799999999988883 488899999842 11 11100 100112233443 43457887
Q ss_pred -EEEEeCCCeEEEEECCC
Q 001159 1033 -VYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1033 -l~~~~~dg~I~vwd~~~ 1049 (1135)
|++.+..+.+.+...+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 55555666655555543
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.60 E-value=0.00034 Score=84.43 Aligned_cols=227 Identities=8% Similarity=-0.006 Sum_probs=131.6
Q ss_pred EEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEccc----ceeeEEecCcCCCeEE
Q 001159 856 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV----DEVKTKLKGHQNRITG 930 (1135)
Q Consensus 856 la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg-~~dg~v~iwd~~~----~~~~~~l~~h~~~i~~ 930 (1135)
|+.+....|++.++.+......+. ....+..|+|++ .+..|+.+ ...+.|+.+++.+ ......+........+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred EEecCccceEEEeCCCCcceeeec-cCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 333345678888887765544433 234567899998 44455444 4568899999875 2222222222234567
Q ss_pred EEEcCC-CCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe---cCeEEEEecCCc
Q 001159 931 LAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH---ESQISVYDSKLE 1006 (1135)
Q Consensus 931 l~~s~d-~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---d~~v~vwd~~~~ 1006 (1135)
|++.+. ++++++-...+.|.+.++....... .+.. .. .....++++|++.+|+.+. .+.|.++++.+.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~~-~~-----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFRE-QG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECCC-SS-----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCceEE--EEeC-CC-----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 888854 4555665667889999987653211 1111 10 2357899999877666642 267888877554
Q ss_pred eeeccCCCCCCCCCEEEEEEeeCCCEE-EEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCCCCE
Q 001159 1007 CSRSWSPKDALPAPISSAIYSCDGLLV-YAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1085 (1135)
Q Consensus 1007 ~~~~~~~~~~h~~~i~~~~~s~d~~~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1135)
....+.... ......|+|++++..| ++-+..+.|.+++++.......+.... ....+.++++.. +.+
T Consensus 530 ~~~~l~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------~~~~P~glavd~--~~l 597 (699)
T 1n7d_A 530 DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------RLAHPFSLAVFE--DKV 597 (699)
T ss_dssp CCCEESCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS--------SCSSCCCCEEET--TEE
T ss_pred CeeEEEeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC--------cCCCceEeEEEC--CEE
Confidence 433322111 2345679999876554 455567789999997533222221110 112333445443 356
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001159 1086 IALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1086 l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+++....+.|..++..+++
T Consensus 598 ywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECSTTTCEEEEETTTEE
T ss_pred EEEeCCCCeEEEEEccCCC
Confidence 6676677899999876655
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.55 E-value=0.14 Score=55.25 Aligned_cols=234 Identities=17% Similarity=0.156 Sum_probs=151.9
Q ss_pred EEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceeeEEecC
Q 001159 845 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKG 923 (1135)
Q Consensus 845 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~ 923 (1135)
.+.-.+|..+.+|.-...++.|+|+++...++.+.-.. .|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 35667888888888888999999999998888877444 455555543 24666554 56799999974 356666665
Q ss_pred cC----CCeEEEEEcCCCCeEEEEcC-------CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCC-----
Q 001159 924 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----- 987 (1135)
Q Consensus 924 h~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 987 (1135)
|. ..|..-..++|.++++..|- .|.+.+|..+.+. -+...||. ..-..+..+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGha-----a~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHA-----ASFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSE-----EEEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeee-----eeeEEEecCCCCCCc
Confidence 53 35788888999999886552 3678899888754 33445553 1122222232
Q ss_pred cEEEEEe----cCeEEEEec-CC---------ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceee
Q 001159 988 THLLVVH----ESQISVYDS-KL---------ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1053 (1135)
Q Consensus 988 ~~l~~~~----d~~v~vwd~-~~---------~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~ 1053 (1135)
..++.+. .+++.|-++ .. +.+..+.+.+.-..--.++..|+.-..+..-+.-|.|++||++||.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2333332 378888888 21 112223333333455668899998888888889999999999999999
Q ss_pred eeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCCCc
Q 001159 1054 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1104 (1135)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~~~ 1104 (1135)
+.-+... ......+..... .=++.....|.|.--.+.+..
T Consensus 294 ~~nrIs~----------~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNRISG----------ETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEECCS----------SCEEEEEEETTT-TEEEEEETTCEEEEEEECTTT
T ss_pred eeecccC----------CceEEecccCCC-CcEEEEccCceEEEEEEcccc
Confidence 8655331 222333343323 345555688887777666544
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.50 E-value=0.025 Score=61.80 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=121.0
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccE--EEEEe---CCCCCeEEEEEecCC----CcEEEEEeCC-----CcE
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQD----NNIIAIGMED-----SSV 907 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~h~~~v~~l~~sp~~----~~~lasg~~d-----g~v 907 (1135)
.....++|.|||+++++-.+|.|++++ +++. +..+. ........|+|+| + +.+.++-..+ +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 356789999999966665589999998 4432 22221 1234688999999 5 4444443332 678
Q ss_pred EEEEcccce------eeEEec---CcCCCeEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCCceec----
Q 001159 908 QIYNVRVDE------VKTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKLK---- 961 (1135)
Q Consensus 908 ~iwd~~~~~------~~~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iwd~~~~~~~~---- 961 (1135)
..|+...++ .+..+. +.......|+|.|||.++++.+.. +.|.-++.+. +...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcc
Confidence 888876431 122233 111124689999999877775432 3455555442 1000
Q ss_pred -------eeeeecCCCCCCCCCCceEEEECC-CCcEEEE-EecCe--------EEEEecCCce---------------ee
Q 001159 962 -------SRFIQAPAGRQSPLVGETKVQFHN-DQTHLLV-VHESQ--------ISVYDSKLEC---------------SR 1009 (1135)
Q Consensus 962 -------~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~-~~d~~--------v~vwd~~~~~---------------~~ 1009 (1135)
.... ..++ .....++|+| +|.++++ ...+. |.+... +.. ..
T Consensus 187 ~~~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 187 LGRRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTCTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCC
T ss_pred cCCCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcC
Confidence 0000 0011 2356789999 6676666 22222 333322 110 00
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeee-CCceeccccccCCCCccEEEEecCCCCCEEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
..... .+......++| .+|.++++....+.|...+++........ ....++ ....++..+++.| ||.++++
T Consensus 260 p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 260 PLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGP-DGALYVT 331 (352)
T ss_dssp CSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECT-TSCEEEE
T ss_pred CeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECC-CCcEEEE
Confidence 00000 11234567888 57777777667778888877644311000 001111 1124567888888 5666665
Q ss_pred Ee
Q 001159 1089 GM 1090 (1135)
Q Consensus 1089 g~ 1090 (1135)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.49 E-value=0.046 Score=59.64 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=125.4
Q ss_pred CCceEEEEeecCCCEEEEEeCCeEEEEECCCcc-EEEEEe---CCCCCeEEEEEecC---CCcEEEEEeC---C----Cc
Q 001159 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~h~~~v~~l~~sp~---~~~~lasg~~---d----g~ 906 (1135)
-.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.+.++-+. + +.
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34568899999998666655899999974 454 222221 12245889999993 2444444332 3 56
Q ss_pred EEEEEcccc-------eee-EEecC-cCCCeEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCCcee----
Q 001159 907 VQIYNVRVD-------EVK-TKLKG-HQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL---- 960 (1135)
Q Consensus 907 v~iwd~~~~-------~~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iwd~~~~~~~---- 960 (1135)
|..|+.... +.+ ..+.. .......|+|.|||.++++.+.. +.|.-.+.+.. ..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCC
Confidence 777776643 111 12221 11124679999999988876532 34444444321 00
Q ss_pred --ceeeeecCCCCCCCCCCceEEEECC-CCcEEEEE--ec--CeEEEEecCCce------------------eeccCCCC
Q 001159 961 --KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HE--SQISVYDSKLEC------------------SRSWSPKD 1015 (1135)
Q Consensus 961 --~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d--~~v~vwd~~~~~------------------~~~~~~~~ 1015 (1135)
..... ..++ .....++|+| +|.++++- .+ ..|.+... +.. +..+. .
T Consensus 186 f~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~--~ 256 (354)
T 3a9g_A 186 FPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTG--S 256 (354)
T ss_dssp STTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECT--T
T ss_pred CCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecC--C
Confidence 00000 0111 2356899999 67766662 22 22433322 110 00110 1
Q ss_pred CCCCCEEEEEEe-------eCCCEEEEEeCCCeEEEEECCCc-eeeeeeCCceeccccccCCCCccEEEEecCCCCCEEE
Q 001159 1016 ALPAPISSAIYS-------CDGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1016 ~h~~~i~~~~~s-------~d~~~l~~~~~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
. ......++|. .+|.++++....+.|...+++.. +..... ..+. ....++..+++.| ||.+.+
T Consensus 257 ~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~----~~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 257 E-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK----NVFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp C-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT----TTSCCEEEEEECT-TSCEEE
T ss_pred C-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc----CCCCCeeEEEECC-CCcEEE
Confidence 1 3457788883 57877777777788988888753 322100 1110 1124577888888 677666
Q ss_pred EEe
Q 001159 1088 LGM 1090 (1135)
Q Consensus 1088 sg~ 1090 (1135)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.46 E-value=0.18 Score=54.40 Aligned_cols=261 Identities=9% Similarity=0.081 Sum_probs=158.3
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..+|.+.|+..+..+..-.-.. .+.-++|..+.++.-. ..++.|+|+++...++....... |.-=.|-. .+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis-~~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS-LN 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEE-TT
T ss_pred CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecC-CC
Confidence 4578899998765543322211 2355788888777654 67999999999999998886543 44444433 33
Q ss_pred EEEEEECCCcEEEEEcCCCchhhhhccccccccccCCCCCCCCCCcccccCCCccccccccCCCCCCCCCCCCCcccccc
Q 001159 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1135)
.|+..+. ..|.-|++.....+.+.+..|..-
T Consensus 118 ~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 5665554 489999986543444444433211
Q ss_pred ccCCCCcccccccccccccccccccccCCcCCccceeEeecCCcccccceEEEEEEecCCcceeEecc-------cceee
Q 001159 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVVRLIYTNSGLSLLALAS-------NAVHK 798 (1135)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~dg~~l~~~~~-------dg~i~ 798 (1135)
...+| .....+++.++++..+- .|.+.
T Consensus 149 ---------------------------------------------~~~QI-InY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 149 ---------------------------------------------AGCQI-INYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp ---------------------------------------------TTCEE-EEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred ---------------------------------------------ccceE-EEEEECCCCCeEEEEeecccCCcccceEE
Confidence 12334 66666777777665432 25566
Q ss_pred eEEeccccCCCCCcccccccCeeecCCCCcceeccCCCCCCCCCceEEEEeecC---CCEEEEEe----CCeEEEEECCC
Q 001159 799 LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS----GGKVSLFNMMT 871 (1135)
Q Consensus 799 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~i~~l~~s~d---g~~la~~~----dg~i~vwd~~~ 871 (1135)
+|+... +.... +.| | ......+.+.-+ .++++.+. .++++|.++..
T Consensus 183 LYS~er----------------------~~sQ~--ieG--h-aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~ 235 (494)
T 1bpo_A 183 LYSVDR----------------------KVSQP--IEG--H-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (494)
T ss_dssp EEESTT----------------------CCEEE--ECC--S-EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred Eeeccc----------------------cccch--hee--e-eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence 665432 22111 222 3 211111111111 12344443 37899999854
Q ss_pred c--------cEEEEE-e---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecCcCCCeEEEEEcCCCCe
Q 001159 872 F--------KVMTMF-M---SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 939 (1135)
Q Consensus 872 ~--------~~~~~~-~---~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~ 939 (1135)
. +....+ - ...+--.++..|+ .-..+..-+.-|.|++||++++.++..-+--.+.|..-+......-
T Consensus 236 ~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G 314 (494)
T 1bpo_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (494)
T ss_dssp CCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE
T ss_pred CccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCc
Confidence 3 111111 1 1234467888998 6778888999999999999999999877766677777666666666
Q ss_pred EEEEcCCCcEEEEeCCCCc
Q 001159 940 LVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 940 l~s~~~D~~i~iwd~~~~~ 958 (1135)
++.....|.|.--.++...
T Consensus 315 i~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 315 IIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEETTCEEEEEEECTTT
T ss_pred EEEEccCceEEEEEEcccc
Confidence 7777788877777666544
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.37 E-value=0.026 Score=60.85 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCeEEEEe------------CCCeEEEEEeCCCC-ceeeeeEeec-----ccCCEEEEEEec--CCCeEEE
Q 001159 411 VNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTG-ELRQHLEIDA-----HVGGVNDIAFAH--PNKQLCI 470 (1135)
Q Consensus 411 V~~v~~spd~~~las~~------------~dg~i~iwd~~~~~-~~~~~~~l~~-----h~~~v~~v~~s~--d~~~~~l 470 (1135)
.-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566788886666652 68999999998432 12222 3333 234677788766 4543233
Q ss_pred EEEcC--CCcEEEEEcCCCe----eeeeecCC-CCCeeEEEeeccCCccEEEEEE-----------------cCCeEEEE
Q 001159 471 VTCGD--DKMIKVWDVVAGR----KQYTFEGH-EAPVYSVCPHHKESIQFIFSTA-----------------IDGKIKAW 526 (1135)
Q Consensus 471 ~s~~~--d~~i~iwd~~~~~----~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s-----------------~dg~i~iw 526 (1135)
++-.. +.+|.+|++..+. .+.++.+. -...+.+.+.+++ .+.++.. ..|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 44333 5688888876532 22334332 2356788887643 6655543 12445445
Q ss_pred eCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCC-CeE--EEEeecccCCceeEEEecC-CCCE
Q 001159 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNR 602 (1135)
Q Consensus 527 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~i~~s~-~~~~ 602 (1135)
|. .+.. .+...-...+.++|+||++.|+.+.. ..+.|+.|++.. +.. .+.+.. ......+++++ +|+.
T Consensus 209 d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 209 SP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDL 280 (355)
T ss_dssp CT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCE
T ss_pred EC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCcE
Confidence 43 3222 22222335688999999999988753 367899999863 332 233421 23567789999 5988
Q ss_pred EEEEeCC-CeEEEEECC--CCceEEEEe
Q 001159 603 FLAAGDE-FQIKFWDMD--NMNMLTTVD 627 (1135)
Q Consensus 603 l~~~~~d-g~i~iwd~~--~~~~~~~~~ 627 (1135)
.+++..+ +.|..|+.. .+..+..+.
T Consensus 281 wva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 7766533 345555544 244444444
No 312
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=97.25 E-value=0.00059 Score=63.42 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.+ ++|+|+.|.||||+..|+..+|..||++.-..+...+.+.+++|..+....++.+++....++. .+.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 4444 9999999999999999999999999998877776678899999999999988888887777765 3555
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-..|+..|++
T Consensus 127 ~~lL~~fL~~ 136 (156)
T 2nxp_A 127 YQLLKRHLQE 136 (156)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5677777765
No 313
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=97.22 E-value=0.00023 Score=64.31 Aligned_cols=81 Identities=12% Similarity=0.209 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|+||||+..|..++|..|+++.-..+... .+.+++|..+....++.+++....+++ .+.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4454 999999999999999999999999999887777666 899999999999988887777665543 3555
Q ss_pred HHHHHHHHHh
Q 001159 140 RNIMLVELKK 149 (1135)
Q Consensus 140 r~~l~~~l~~ 149 (1135)
-+.|+..|++
T Consensus 107 ~~lL~~fL~~ 116 (138)
T 2j4b_A 107 FDLLINFLEE 116 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677777766
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.14 E-value=0.0074 Score=63.38 Aligned_cols=166 Identities=9% Similarity=0.109 Sum_probs=108.2
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEE-ecC----cCC--CeEEEEE---cCCCCeEEEEc-------
Q 001159 882 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKG----HQN--RITGLAF---SPTLNALVSSG------- 944 (1135)
Q Consensus 882 ~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~-l~~----h~~--~i~~l~~---s~d~~~l~s~~------- 944 (1135)
.---.+++|++.++.++++.-..++|..|+...+..... +.+ ... .+.+|.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 334567899885566666555899999999876543332 332 111 3679999 68887777543
Q ss_pred ------CCCcEEEEeCC---CCceeceeeeecCC-------CCCCCCCCceEEEECCCCcEEEE-Eec-CeEEEEecCCc
Q 001159 945 ------ADAQLCMWSID---KWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLV-VHE-SQISVYDSKLE 1006 (1135)
Q Consensus 945 ------~D~~i~iwd~~---~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~-~~d-~~v~vwd~~~~ 1006 (1135)
.+..|..+|+. +++.+....+.... +.. ......++..++|+..++ +.. +.|...+..++
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26779999999 76654322221110 001 034689999999998887 555 67666666655
Q ss_pred eeeccCCC---CCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCC
Q 001159 1007 CSRSWSPK---DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1049 (1135)
Q Consensus 1007 ~~~~~~~~---~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~ 1049 (1135)
.+..+... .......+.|++.|||+.|++....|.+..+|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 44433211 11123367899999999988887799999999984
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.11 E-value=0.082 Score=57.65 Aligned_cols=240 Identities=10% Similarity=0.039 Sum_probs=126.4
Q ss_pred CceEEEEeecCCC-EEEEEeCCeEEEEECCCccEEEEEe-------CCCCCeEEEEEecC---CCcEEEEEeC-------
Q 001159 842 ESAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME------- 903 (1135)
Q Consensus 842 ~~i~~l~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~sp~---~~~~lasg~~------- 903 (1135)
.....|+|.|||+ ++++-..|.|++++.. ++....+. ........|+|+|+ ++.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3568999999999 6655558999999854 33211111 12235689999993 3444443322
Q ss_pred CCcEEEEEcccc--e--eeE----Eec-----CcCCCeEEEEEcCCCCeEEEEcCC-------------CcEEEEeCCCC
Q 001159 904 DSSVQIYNVRVD--E--VKT----KLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKW 957 (1135)
Q Consensus 904 dg~v~iwd~~~~--~--~~~----~l~-----~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iwd~~~~ 957 (1135)
...|..|++..+ + ... .+. .|. ...|+|.|||.++++.+.. +.|.-.+.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666432 1 111 121 122 3579999999877776542 34555555431
Q ss_pred cee----------ceeeeecCCCCCCCCCCceEEEECC-CCcEEEEE--ecCeEEEEec-CCcee---------------
Q 001159 958 EKL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HESQISVYDS-KLECS--------------- 1008 (1135)
Q Consensus 958 ~~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~v~vwd~-~~~~~--------------- 1008 (1135)
-.. ...... .++ .....++|+| +|.++++- .++.=.|.-+ .+...
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 000 000000 011 2457899999 66666662 2222223222 11110
Q ss_pred ---------eccCCC---CCCCCCEEEEEEee-------CCCEEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCC
Q 001159 1009 ---------RSWSPK---DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSN 1069 (1135)
Q Consensus 1009 ---------~~~~~~---~~h~~~i~~~~~s~-------d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1135)
..+... -.+......++|.. +|.++++....+.|...+++.++...... .+. ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CC
Confidence 000000 01123567788863 57777777778888888888665443211 110 11
Q ss_pred CCccEEEEecCCCCCEEEEEe-cCCcEEEEec
Q 001159 1070 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEP 1100 (1135)
Q Consensus 1070 ~~~~~~~~~~~~~~~~l~sg~-~dg~v~~W~~ 1100 (1135)
..++..+.+.| ||.++++.. .+| +||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 14677889988 677666533 344 45544
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.01 E-value=0.35 Score=54.53 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCceEEEEeecCCCEEEEEeC-CeEEEEECCCccEE--EEEeC------CCCCeEEEEEecC--CCcEEEEEeC------
Q 001159 841 EESAACIALSKNDSYVMSASG-GKVSLFNMMTFKVM--TMFMS------PPPAATFLAFHPQ--DNNIIAIGME------ 903 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~d-g~i~vwd~~~~~~~--~~~~~------h~~~v~~l~~sp~--~~~~lasg~~------ 903 (1135)
-...+.|+|.|||+++++-.. +.|++++..+++.. ..+.. .......|+|+|+ .+..|.....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999998887665 47999987655432 22221 1245679999993 0344444432
Q ss_pred -------CCcEEEEEcccc-------eee-EEecC-cCCCeEEEEEcCCCCeEEEEcC
Q 001159 904 -------DSSVQIYNVRVD-------EVK-TKLKG-HQNRITGLAFSPTLNALVSSGA 945 (1135)
Q Consensus 904 -------dg~v~iwd~~~~-------~~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~ 945 (1135)
...|.-|++..+ +.+ ..+.. .......|+|.|||.++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235555655421 111 11221 1123689999999998888764
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.01 E-value=0.083 Score=56.43 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=117.8
Q ss_pred CCEEEEEe---CCeEEEEECCCccEEEE--EeCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEccccee--eEEe
Q 001159 853 DSYVMSAS---GGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEV--KTKL 921 (1135)
Q Consensus 853 g~~la~~~---dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~~lasg~~d----g~v~iwd~~~~~~--~~~l 921 (1135)
+.+++.|+ ...+.+||..+.+-... +......-.++. - ++.+++.|+.+ ..+.+||..+++- +..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 34555665 25799999987643221 111111122222 2 56788888765 6788999887643 2222
Q ss_pred cCcCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-e
Q 001159 922 KGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H 994 (1135)
Q Consensus 922 ~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~ 994 (1135)
......-.++.+ ++++++.|+.+ ..+.+||..+.+-.. +...... ..-..++ .-+++.++.+ .
T Consensus 89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~----r~~~~~~-~~~~~iyv~GG~ 158 (306)
T 3ii7_A 89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQ----RCSHGMV-EANGLIYVCGGS 158 (306)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSSC----CBSCEEE-EETTEEEEECCE
T ss_pred CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcCC----cceeEEE-EECCEEEEECCC
Confidence 221112222222 67788888765 458899988765221 1111110 1111222 2366666663 2
Q ss_pred ---------cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeCCce
Q 001159 995 ---------ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 995 ---------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
-..+.+||.....-....... .......+..-++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 233 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMI--EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP--- 233 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC---
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCcc--chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC---
Confidence 345889998444333332211 1111112222377888887754 358999999875443211
Q ss_pred eccccccCCCCccEEEEecCCCCCEEEEEecC-----CcEEEEecCCCc
Q 001159 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-----GAVHVVEPSDAE 1104 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~v~~W~~~~~~ 1104 (1135)
.|.. .....++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 234 -~p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 234 -MPWK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp -CSCC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred -CCCC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 1111 111222333 56788888865 467888887755
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.98 E-value=0.24 Score=53.93 Aligned_cols=230 Identities=16% Similarity=0.083 Sum_probs=119.1
Q ss_pred CCeeEEEEecCCCeEEEEEeccceEEEEEcCCcc-ccccCCceeecccccccchhhhhccCCCcceEEEEEcCC---CCe
Q 001159 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1135)
Q Consensus 347 ~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---~~~ 422 (1135)
...+.++|.|+|+ ++++ ..+|.|.+++. +++ .+.. + + +..........|+|+|+ +..
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~-~G~~~~~~-------~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLISP-SGKKLVAS-------F-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEECS-SCEEEEEE-------C-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEeC-CCceEeec-------c-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4688999999997 5554 55699998873 443 1110 0 0 11223356889999998 555
Q ss_pred EEEEeC----C----CeEEEEEeCCCC-ce---eee-eEeec-ccCCEEEEEEecCCCeEEEEEEcC-------------
Q 001159 423 LGVAFS----K----HIVHLYTYNPTG-EL---RQH-LEIDA-HVGGVNDIAFAHPNKQLCIVTCGD------------- 475 (1135)
Q Consensus 423 las~~~----d----g~i~iwd~~~~~-~~---~~~-~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~------------- 475 (1135)
|.++.. + +.|..|+...+. .+ +.. ..+.. .......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 544433 3 568888876541 11 111 11221 111246799999997 4554332
Q ss_pred CCcEEEEEcCCCe----------eeeeecCCCCCeeEEEeeccCCccEEEEEEcCC---eEEEEeCcCCC----------
Q 001159 476 DKMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLG---------- 532 (1135)
Q Consensus 476 d~~i~iwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~---------- 532 (1135)
.+.|...+.. ++ .+.. .++. ....++|+|.. |.++++-...+ .|.+. ..+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK 241 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence 1345544532 22 1111 2333 34578888732 24444332221 13222 1111
Q ss_pred --------ceeEecCCCCcEEEEEEc-------CCCCEEEEEecCCCCCCeEEEEECCCC-eEE--EEeecccCCceeEE
Q 001159 533 --------SRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVV 594 (1135)
Q Consensus 533 --------~~~~~~~~~~~i~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~i 594 (1135)
....+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..+
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v 317 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDV 317 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEE
Confidence 112221223467788884 4565555443 2567888887643 332 22322112367889
Q ss_pred EecCCCCEEEEEe
Q 001159 595 QFDTTRNRFLAAG 607 (1135)
Q Consensus 595 ~~s~~~~~l~~~~ 607 (1135)
++.|||..+++..
T Consensus 318 ~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 318 VIDDDGGILISTS 330 (354)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCcEEEEEe
Confidence 9999987666553
No 319
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=96.98 E-value=0.00039 Score=63.51 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=73.4
Q ss_pred chhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001159 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1135)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1135)
++.. ++|+||.|+||||+..| .++|..|+++.-..+...+.+.+++|..+....++.+++....+++ .+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4454 99999999999999999 9999999998777775567788899998888888887777766654 3555
Q ss_pred HHHHHHHHHhhcccCcccccccCCCCCchHHHHHHHHHHHH
Q 001159 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1135)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1135)
-..|+..|++--.. -.+-|..||++.+.
T Consensus 109 ~~lL~~fL~~~~~~-------------gg~~ll~Iin~~i~ 136 (148)
T 2j49_A 109 LNLLLYFLNENESI-------------GGSLIISVINQHLD 136 (148)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHEE
T ss_pred HHHHHHHHHHcCcc-------------cHHHHHHHHHHhee
Confidence 56666666652211 12367777776543
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.97 E-value=0.052 Score=59.28 Aligned_cols=229 Identities=13% Similarity=0.027 Sum_probs=117.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEee---cccCCEEEEEEecC---CCeEEEEEEcCC-----Cc
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID---AHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 478 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l~---~h~~~v~~v~~s~d---~~~~~l~s~~~d-----~~ 478 (1135)
.-..++|.|||++++ +..+|.|.+++ .++ ......+. ........|+|+|+ +..+ .++-..+ ..
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l-Yv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYV-YAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEE-EEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEE-EEEEecCCCCCccE
Confidence 467899999998555 45679999998 332 22111111 12346889999998 5543 3333322 57
Q ss_pred EEEEEcCCCe-----ee-eeec---CCCCCeeEEEeeccCCccEEEEEEc-------------CCeEEEEeCcCC-----
Q 001159 479 IKVWDVVAGR-----KQ-YTFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 531 (1135)
Q Consensus 479 i~iwd~~~~~-----~~-~~~~---~h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~----- 531 (1135)
|..++...+. .+ ..+. +.......++|.|++ .+.++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876431 11 1233 111223578887754 55555332 245665655420
Q ss_pred -------CceeEecCCCCcEEEEEEcC-CCCEEEEEecCCCC-----CCeEEEEECCC----------------CeEEEE
Q 001159 532 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 582 (1135)
Q Consensus 532 -------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 582 (1135)
.....+...-.....++|+| +++..++-. ..+. ...|.+..... ...+..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 01111111122456789999 555444332 1111 11243332211 011222
Q ss_pred eecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCce------EEEEeCCCCCCCcceEEEcCCCCEEEEEE
Q 001159 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1135)
Q Consensus 583 ~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 651 (1135)
+..+. ....++| .+|..+++.-..+.|...+++.... ...+-. ....+..+++.|||.+.++..
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 21111 3455666 3566666555667787777764321 122211 123678999999998776654
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.94 E-value=0.08 Score=56.37 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=118.7
Q ss_pred CCCEEEEEe-C------CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCC-----CcEEEEEcccce--
Q 001159 852 NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDE-- 916 (1135)
Q Consensus 852 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~d-----g~v~iwd~~~~~-- 916 (1135)
++.+++.|+ . ..+.+||+.+.+-...-....... .+++. . ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455566655 2 368999988764322111111111 22222 3 56788888865 468999988754
Q ss_pred ---eeEEecCcCCCeEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCc
Q 001159 917 ---VKTKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 988 (1135)
Q Consensus 917 ---~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 988 (1135)
.+..+......-.++.+ ++++++.++.+ ..+.++|..+.+-...... +... .....+. .+++
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r----~~~~~~~--~~~~ 161 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTAR----EGAGLVV--ASGV 161 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSCC----BSCEEEE--ETTE
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCCc----ccceEEE--ECCE
Confidence 22222222222222222 67777777654 3588888877552221111 1111 1112222 2666
Q ss_pred EEEEE-e-----cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeC
Q 001159 989 HLLVV-H-----ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 989 ~l~~~-~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~ 1057 (1135)
.++.+ . -..+.+||.....-....... .......+..-++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 239 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA--TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCC--cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC
Confidence 66664 2 256889998433333322211 1111112223477888888764 468999999876543211
Q ss_pred CceeccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCC
Q 001159 1058 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~ 1109 (1135)
.+.. . ....++.. ++++++.|+.++ .+.+||+.+.+ |..
T Consensus 240 ----~p~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 283 (301)
T 2vpj_A 240 ----MTTP---R-CYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV 283 (301)
T ss_dssp ----CSSC---C-BSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred ----CCCc---c-cceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111 1 11122232 567888888763 57788887644 543
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.86 E-value=0.093 Score=55.90 Aligned_cols=232 Identities=12% Similarity=0.049 Sum_probs=114.7
Q ss_pred CCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcCCCee
Q 001159 419 DGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRK 489 (1135)
Q Consensus 419 d~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~ 489 (1135)
++..++.|+.+ ..+..||+.+.+ ......+......-..+. -++. +++.|+.+ ..+.+||..+.+-
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER-WHQVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc-EeEcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCce
Confidence 34456666543 358888888753 221111211111111222 2454 66667644 3688999887653
Q ss_pred ee--eecCCCCCeeEEEeeccCCccEEEEEEcCC-----eEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEe
Q 001159 490 QY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCG 560 (1135)
Q Consensus 490 ~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~ 560 (1135)
.. .+........++.+ ++.+++.|+.++ .+.+||+.+.+-...-... .....++. -+++.++.|+
T Consensus 90 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 163 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGG 163 (302)
T ss_dssp EEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred eeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeC
Confidence 32 22211112222222 236777777553 4778887765433321111 11222222 2556666666
Q ss_pred cCCCC---CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCC
Q 001159 561 TSKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGL 632 (1135)
Q Consensus 561 ~~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 632 (1135)
.+... ...+.+||+.+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 43321 34689999988765433211111111122222 46666677653 4689999988654433222111
Q ss_pred CCcceEEEcCCCCEEEEEECCC-----cEEEEEcCCC
Q 001159 633 PASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1135)
Q Consensus 633 ~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 664 (1135)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111122223677777777543 4788888765
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.85 E-value=0.049 Score=58.07 Aligned_cols=232 Identities=12% Similarity=0.037 Sum_probs=116.5
Q ss_pred CCCeEEEEe-CC-----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC-----CcEEEEEcCCC
Q 001159 419 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1135)
Q Consensus 419 d~~~las~~-~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~ 487 (1135)
++..++.|+ .+ ..+.+||+.+.+- .....+.........+ ..++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~--~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYVASV--SLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEE--EETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccccEE--EECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 456666766 33 3688899887542 2111121111111122 23454 66667654 46899998876
Q ss_pred e---e--eeeecCCCCCeeEEEeeccCCccEEEEEEcC-----CeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCE
Q 001159 488 R---K--QYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTR 555 (1135)
Q Consensus 488 ~---~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~ 555 (1135)
+ - +..+........++.+ ++.+++.|+.+ ..+.+||..+.+-...-... .....++.+ +++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEE
Confidence 5 2 2222211122222222 23666777644 35888888765533322111 112222222 5666
Q ss_pred EEEEecCCC-CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCC
Q 001159 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1135)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1135)
++.|+.+.. ....+.+||+.+.+-...-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 666664322 13568999998876543322111111112222 245666667653 46899999887654332222
Q ss_pred CCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001159 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 630 ~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 664 (1135)
.. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 11112222366777777755 35778887665
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.84 E-value=0.13 Score=54.95 Aligned_cols=230 Identities=7% Similarity=-0.040 Sum_probs=116.1
Q ss_pred CeEEEEeC--CCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCC----CcEEEEEcCCCeeee--e
Q 001159 421 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQY--T 492 (1135)
Q Consensus 421 ~~las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~--~ 492 (1135)
.+++.|+. ...+.+||..+++-. ....+......-..+. -++. +++.|+.+ ..+.++|+.+++-.. .
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 35556654 356889998875422 1111211111112222 2454 66777654 678899988875432 2
Q ss_pred ecCCCCCeeEEEeeccCCccEEEEEEcC------CeEEEEeCcCCCceeEecCC--CCcEEEEEEcCCCCEEEEEecCCC
Q 001159 493 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKE 564 (1135)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~~ 564 (1135)
+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-... .....++. -+++.++.++.+..
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2211112222222 33677777765 45888888765433321111 11122222 25666666664332
Q ss_pred C-----CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCC
Q 001159 565 G-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 565 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
. ...+.+||+.+.+-...-.......-.+++.. +++.++.|+.+ ..+.+||+.+.+-...-........
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 2 35689999988764433221111111122222 45666666543 4688999988654332221111111
Q ss_pred cceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 664 (1135)
..++.+ ++++++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 222222 67778888743 46788888765
No 325
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.84 E-value=0.16 Score=54.10 Aligned_cols=231 Identities=14% Similarity=0.151 Sum_probs=117.9
Q ss_pred CCCEEEEEe-C----CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeCCC-----cEEEEEccccee--e
Q 001159 852 NDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGMEDS-----SVQIYNVRVDEV--K 918 (1135)
Q Consensus 852 dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~dg-----~v~iwd~~~~~~--~ 918 (1135)
++.+++.|+ + ..+..||+.+.+-...-....... .+++.. ++.+++.|+.++ .+.+||..+.+- +
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 445555555 2 458899988764322211111111 222222 567888887653 588999887642 2
Q ss_pred EEecCcCCCeEEEEEcCCCCeEEEEcCCC-----cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 919 TKLKGHQNRITGLAFSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 919 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
..+......-.++. .++++++.|+.++ .+.+||+.+.+-.. +....... .. ..++. -+++.++.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r---~~-~~~~~-~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRR---SS-VGVGV-VGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCC---BS-CEEEE-ETTEEEEEC
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcc---cC-ceEEE-ECCEEEEEe
Confidence 22222111222222 2677888887653 47788887755221 11111100 11 12222 356666663
Q ss_pred -e-------cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeeeeCCce
Q 001159 994 -H-------ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 994 -~-------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
. -..+.+||.....-............- + +..-++++++.|+.+ ..+.+||+.+.+-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-G-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-E-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-c-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 2 235888998433332222111001111 2 223478888888765 368999999876543211
Q ss_pred eccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCC
Q 001159 1061 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~ 1109 (1135)
.+.. . ....++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 238 -~~~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 -MNMC---R-RNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -CSSC---C-BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCCc---c-ccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111 1 11112222 567888888764 48889987755 654
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.63 E-value=0.66 Score=50.37 Aligned_cols=236 Identities=9% Similarity=-0.005 Sum_probs=118.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEEeCCCCceeeeeEe----ecccCCEEEEEEecC---CCeEEEEEEcC------C
Q 001159 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHVGGVNDIAFAHP---NKQLCIVTCGD------D 476 (1135)
Q Consensus 410 ~V~~v~~spd~~~las~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~v~~v~~s~d---~~~~~l~s~~~------d 476 (1135)
....++|.|+|+.|.++...|.|++++... ........+ .........|+|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 367899999999444566789999998543 211111111 112345789999996 55433332221 2
Q ss_pred CcEEEEEcCCC--e--eee----eecC---CCCCeeEEEeeccCCccEEEEEEc-------------CCeEEEEeCcCCC
Q 001159 477 KMIKVWDVVAG--R--KQY----TFEG---HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYLG 532 (1135)
Q Consensus 477 ~~i~iwd~~~~--~--~~~----~~~~---h~~~v~~i~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~~ 532 (1135)
..|..|++..+ . ... .+.. ....-..++|.|++ .+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666766433 1 111 1211 11123568887753 55555433 2456666655320
Q ss_pred ------------ceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEEC--------CCC---------------
Q 001159 533 ------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE--------SEG--------------- 577 (1135)
Q Consensus 533 ------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~--------~~~--------------- 577 (1135)
....+.........++|+|+...|+++-...++...|.+... ..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111122222357789999943344443221111112222110 000
Q ss_pred ------eEEEEeecccCCceeEEEecC-------CCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCCCCcceEEEcCC
Q 001159 578 ------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKE 643 (1135)
Q Consensus 578 ------~~~~~~~~~~~~~v~~i~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 643 (1135)
..+..+..+. ....+.|.. +|.++++.-..+.|...+++.++.......- .....+..+++.||
T Consensus 256 ~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0111121111 355566653 4666666667788888888766544332211 11236789999999
Q ss_pred CCEEEEE
Q 001159 644 GSLLAVT 650 (1135)
Q Consensus 644 ~~~l~~~ 650 (1135)
|.+.++.
T Consensus 334 G~lyv~t 340 (353)
T 2g8s_A 334 GYLYVLT 340 (353)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866643
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.62 E-value=0.19 Score=53.60 Aligned_cols=234 Identities=13% Similarity=0.108 Sum_probs=119.8
Q ss_pred eecCCCEEEEEe-C----CeEEEEECCCccEEEEEeCCCCCe-EEEEEecCCCcEEEEEeC----C-----CcEEEEEcc
Q 001159 849 LSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNVR 913 (1135)
Q Consensus 849 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~----d-----g~v~iwd~~ 913 (1135)
..-++.+++.|+ + ..+.+||..+.+-...-....... .+++.. ++.+++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 334667777776 2 469999988765322211111111 123332 5677877776 2 468899988
Q ss_pred cceee--EEecCcCCCeEEEEEcCCCCeEEEEcCC-----CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC
Q 001159 914 VDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 986 (1135)
Q Consensus 914 ~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 986 (1135)
+.+-. ..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.. +...... ......+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~---r~~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTR---RIGVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSSC---CBSCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCcc---ccceEEEEE--C
Confidence 76422 222211112222233 67777777643 358889988755221 1111100 011122222 5
Q ss_pred CcEEEEE-e-----cCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC-----CeEEEEECCCceeeee
Q 001159 987 QTHLLVV-H-----ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 987 g~~l~~~-~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d-----g~I~vwd~~~~~~~~~ 1055 (1135)
+++++.+ . -..+.+||.....-............-.++ .-++++++.|+.+ ..+.+||+.+.+-...
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 2 246889998443333322211101111222 2378888888765 5699999998765432
Q ss_pred eCCceeccccccCCCCccEEEEecCCCCCEEEEEecCC-----cEEEEecCCCccccCC
Q 001159 1056 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~v~~W~~~~~~~~~~~ 1109 (1135)
-. .+.. . ....++.. ++++++.|+.++ .+.+||+.+.+ |..
T Consensus 247 ~~----~p~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 292 (308)
T 1zgk_A 247 AP----MKHR---R-SALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 292 (308)
T ss_dssp CC----CSSC---C-BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred CC----CCCC---c-cceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence 11 1111 1 11112222 567888888653 57788887654 543
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.57 E-value=0.12 Score=55.53 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=116.7
Q ss_pred ceEEEEeecCCCEEEEE-------------eCCeEEEEECCC--ccEE-EEEeC-----CCCCeEEEEEecC-CCc-EEE
Q 001159 843 SAACIALSKNDSYVMSA-------------SGGKVSLFNMMT--FKVM-TMFMS-----PPPAATFLAFHPQ-DNN-IIA 899 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~~-~~~~~-----h~~~v~~l~~sp~-~~~-~la 899 (1135)
....+++.|+|..++++ .+|.|.++|..+ .+.. ..+.+ .......+.+.++ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566778888777665 378999999873 2221 12332 1235677777652 232 344
Q ss_pred EE-eC--CCcEEEEEcccc----eeeEEecCc-CCCeEEEEEcCCCCeEEEEcC---C------------CcEEEEeCCC
Q 001159 900 IG-ME--DSSVQIYNVRVD----EVKTKLKGH-QNRITGLAFSPTLNALVSSGA---D------------AQLCMWSIDK 956 (1135)
Q Consensus 900 sg-~~--dg~v~iwd~~~~----~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~---D------------~~i~iwd~~~ 956 (1135)
++ .. +.+|.+|+++.+ ..+..+.+. -...+.+++.++|.++++... | ..=.+|.++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44 33 467888877653 223344432 235789999999998887651 1 2233443333
Q ss_pred CceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE--ecCeEEEEecC--Cce--eeccCCCCCCCCCEEEEEEee-C
Q 001159 957 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSK--LEC--SRSWSPKDALPAPISSAIYSC-D 1029 (1135)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~--~~~--~~~~~~~~~h~~~i~~~~~s~-d 1029 (1135)
++. . ...... ...+.++||||++.|+++ ..+.|..|++. +.. .+.+ .. ......+++.+ +
T Consensus 211 ~~~-~-~~~~~l-------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 211 NDV-R-VVAEGF-------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVT 277 (355)
T ss_dssp TCC-E-EEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTT
T ss_pred CeE-E-EeecCC-------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCC
Confidence 321 1 111111 235789999999988885 57889999982 322 1122 11 35568899999 5
Q ss_pred CCEEEEEeCC-CeEEEEECC--CceeeeeeC
Q 001159 1030 GLLVYAGFCD-GAIGVFDAE--TLRFRCRIG 1057 (1135)
Q Consensus 1030 ~~~l~~~~~d-g~I~vwd~~--~~~~~~~~~ 1057 (1135)
|++.+++..+ +.|..|+-+ .+..+.+++
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 9977766544 244444433 245555554
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.49 E-value=0.43 Score=51.00 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=114.2
Q ss_pred CCeEEEEECCCccEEE-EEeCCCCCeEEEEEecCCCcEEEEEeC-----C------CcEEEEEccccee--eEEecCcCC
Q 001159 861 GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGME-----D------SSVQIYNVRVDEV--KTKLKGHQN 926 (1135)
Q Consensus 861 dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~~ 926 (1135)
...+.+||..+.+-.. .+..+.......+... ++.+++.|+. . ..+..||..+++- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998876432 2222223334444444 6788888884 1 1278888887652 222221111
Q ss_pred CeEEEEEcCCCCeEEEEcCC--------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEec---
Q 001159 927 RITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--- 995 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--- 995 (1135)
.-..+.+ ++++++.||.+ ..+.++|..+.+-. .+..... ......+...+++.++.++.
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~-----~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPY-----VVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSS-----CCBSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCC-----cccceeEEEECCEEEEEeCCCCC
Confidence 1122222 66777777732 35888998875421 1111111 01112222345666666422
Q ss_pred ----CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC-----eEEEEECCCceeeeeeCCceeccccc
Q 001159 996 ----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFRCRIGPSAYIPTYA 1066 (1135)
Q Consensus 996 ----~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~ 1066 (1135)
..+.+||.....-....... .......+..-++++++.|+.++ .+.+||+.+.+-...-. .|..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc-
Confidence 46889998443333322211 11111122234778888887655 58899999875543211 1111
Q ss_pred cCCCCccEEEEecCCCCCEEEEEecCC--------------cEEEEecCCCccccCC
Q 001159 1067 VSNTAHPLVIAPHPSEPNQIALGMSDG--------------AVHVVEPSDAELKWGG 1109 (1135)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~~l~sg~~dg--------------~v~~W~~~~~~~~~~~ 1109 (1135)
. ....++.. ++++++.|+.++ .+.+||+.+.+ |..
T Consensus 234 --r-~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 282 (315)
T 4asc_A 234 --R-SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEG 282 (315)
T ss_dssp --C-BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEE
T ss_pred --c-cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhh
Confidence 1 11122232 457888888743 36677876654 543
No 330
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.48 E-value=0.1 Score=56.37 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=102.7
Q ss_pred EEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce------
Q 001159 847 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 916 (1135)
Q Consensus 847 l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~------ 916 (1135)
...+.+|..++++.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 34567889999998999999998855555555543 23688999999 899999875 4579998887321
Q ss_pred ----e--eEEecC------cCCCeEEEEEcCC---CCeEEEEcCCCcEEEEeCCCCceeceeeeecCC---CCCCCCCCc
Q 001159 917 ----V--KTKLKG------HQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---GRQSPLVGE 978 (1135)
Q Consensus 917 ----~--~~~l~~------h~~~i~~l~~s~d---~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v 978 (1135)
. ...+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... +.......|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 0 112221 2567999999996 46899999999999999997332222 222111 111122578
Q ss_pred eEEEECCCCcEEEE-E--ecCeEEE
Q 001159 979 TKVQFHNDQTHLLV-V--HESQISV 1000 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~-~--~d~~v~v 1000 (1135)
.+++|.+++-.|.+ + .+|.|+-
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEE
Confidence 89999998866655 3 4566653
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.38 E-value=1.8 Score=48.43 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=77.1
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCcc------E-------EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------V-------MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSS 906 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~------~-------~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~ 906 (1135)
...-.+.++|||+++++++ +.++.|+|++... . ....+ -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3344789999999999998 7899999997421 1 22222 234568899999 7765666668999
Q ss_pred EEEEEcccc----------eeeEEecCcCCCeEEEEE------cCCCCeEEEEc---CCCc----------EEEEeCCCC
Q 001159 907 VQIYNVRVD----------EVKTKLKGHQNRITGLAF------SPTLNALVSSG---ADAQ----------LCMWSIDKW 957 (1135)
Q Consensus 907 v~iwd~~~~----------~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~---~D~~----------i~iwd~~~~ 957 (1135)
|.-|++... ..+..+.-|-. +-.+.- .+||++|++.. .|.. -.+.|+...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCC
Confidence 999999764 34555655543 222322 57899999874 4543 367777654
Q ss_pred c
Q 001159 958 E 958 (1135)
Q Consensus 958 ~ 958 (1135)
+
T Consensus 480 k 480 (638)
T 3sbq_A 480 E 480 (638)
T ss_dssp S
T ss_pred c
Confidence 4
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.36 E-value=0.19 Score=53.76 Aligned_cols=228 Identities=9% Similarity=-0.051 Sum_probs=111.0
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC-----C------CcEEEEEcCCCeee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQ 490 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~ 490 (1135)
+++.|+ ..+.+||..+++-.. ..+..........+...++. +++.|+. . ..+.+||..+++-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344455 568999998865321 23322222233333344565 5666663 1 12778898877542
Q ss_pred e--eecCCCCCeeEEEeeccCCccEEEEEEcC--------CeEEEEeCcCCCceeEec--CCCCcEEEEEEcCCCCEEEE
Q 001159 491 Y--TFEGHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFS 558 (1135)
Q Consensus 491 ~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~ 558 (1135)
. .+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-. .......++. -+++.++.
T Consensus 81 ~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~ 154 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVI 154 (315)
T ss_dssp ECCCBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred ECCCCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEE
Confidence 2 11111111112222 23566666642 458888887654322111 1111122222 35556666
Q ss_pred EecCC--CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeCCCC
Q 001159 559 CGTSK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGG 631 (1135)
Q Consensus 559 ~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 631 (1135)
|+... .....+.+||+.+.+-...-.......-.+++.. +++.++.|+.++ .+.+||+.+.+-...-.....
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 233 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE 233 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence 65411 1134689999988754332211111111122222 566777777543 588899988754433222211
Q ss_pred CCCcceEEEcCCCCEEEEEECCC--------------cEEEEEcCCC
Q 001159 632 LPASPRLRFNKEGSLLAVTTSDN--------------GIKILANSDG 664 (1135)
Q Consensus 632 ~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~ 664 (1135)
.....+..-++++++.|+.++ .+.+||+.+.
T Consensus 234 --r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 --RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp --CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred --ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111122223567777777632 3667787665
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.13 Score=64.26 Aligned_cols=202 Identities=14% Similarity=0.126 Sum_probs=125.5
Q ss_pred EEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceeeEEecCc
Q 001159 846 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGH 924 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h 924 (1135)
+.-.+|..+.+|.-...++.|+|+++...++.+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 455678888888877889999999988777776533 3455556653 34565554 56799999974 3454555444
Q ss_pred ----CCCeEEEEEcCCCCeEEEEc-------CCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE
Q 001159 925 ----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 993 (1135)
Q Consensus 925 ----~~~i~~l~~s~d~~~l~s~~-------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 993 (1135)
...|..-..+++.++++..| -.|.+.+|.++.+. -+...||........--...+....++.+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhhhheeccCCCCCCceEEEEE
Confidence 35688888899999988655 34778889887643 33344543211000000001122233323
Q ss_pred ----ecCeEEEEec-CC---c------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC
Q 001159 994 ----HESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 994 ----~d~~v~vwd~-~~---~------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1057 (1135)
..+++.|-++ .. . .+..+.+...-..-..++..|+.-..+..-+.-|.|+++|+.||.++..-+
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 2367888887 22 1 111122222223334577788888888888899999999999999887544
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.32 E-value=0.15 Score=55.14 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCcEEEEEeCCCcEEEEEcccceeeEEecCc----CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceec--------
Q 001159 894 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK-------- 961 (1135)
Q Consensus 894 ~~~~lasg~~dg~v~iwd~~~~~~~~~l~~h----~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~-------- 961 (1135)
++..++.+ .++.||.-++......+.+... -+.|..+..||+|++||..+. ..|.|-.+..+....
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 44444444 3466777776644334444322 236888999999999999874 468888877322111
Q ss_pred --eeeeecCCCCCCCCCCceEEEECCCC---cEEEE-EecCeEEEEecCC-c-eeeccC------CCCCCCCCEEEEEEe
Q 001159 962 --SRFIQAPAGRQSPLVGETKVQFHNDQ---THLLV-VHESQISVYDSKL-E-CSRSWS------PKDALPAPISSAIYS 1027 (1135)
Q Consensus 962 --~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~-~~d~~v~vwd~~~-~-~~~~~~------~~~~h~~~i~~~~~s 1027 (1135)
.+......-......+|..+.|+|-+ ..|++ ..|+.|++||+.. . ....+. ..+.....|.+++|+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 11111110001113679999999975 36666 8999999999932 1 111111 112234789999999
Q ss_pred eCCCEEEEEe--CCCeEEEE
Q 001159 1028 CDGLLVYAGF--CDGAIGVF 1045 (1135)
Q Consensus 1028 ~d~~~l~~~~--~dg~I~vw 1045 (1135)
+++-.|...+ ..|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887777754 78888653
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.24 E-value=0.27 Score=52.40 Aligned_cols=234 Identities=7% Similarity=-0.024 Sum_probs=115.4
Q ss_pred cCCCCeEEEEeCC----CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC----C-----CcEEEEE
Q 001159 417 GPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWD 483 (1135)
Q Consensus 417 spd~~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d-----~~i~iwd 483 (1135)
.-++..++.|+.+ ..+.+||..+.+-.. ...+..-...- +++. -++. +++.|+. + ..+.++|
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3466777777742 358899988754221 11111111111 1222 2454 5666665 2 4688899
Q ss_pred cCCCeeee--eecCCCCCeeEEEeeccCCccEEEEEEcC-----CeEEEEeCcCCCceeE--ecCCCCcEEEEEEcCCCC
Q 001159 484 VVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGT 554 (1135)
Q Consensus 484 ~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~ 554 (1135)
+.+.+-.. .+........++.+ ++.+++.|+.+ ..+.+||..+.+-... +........++.+ +++
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 170 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRL 170 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCE
Confidence 88765332 12211112222222 23666666543 3578888876543221 1111112222223 566
Q ss_pred EEEEEecCCCC-CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeC
Q 001159 555 RLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDA 628 (1135)
Q Consensus 555 ~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 628 (1135)
.++.|+.+... ...+.+||+.+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-..
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 66666643222 35689999987764332111111111122222 55666667654 5689999988654332221
Q ss_pred CCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q 001159 629 DGGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1135)
Q Consensus 629 ~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 664 (1135)
.... .-.+++. -++++++.|+.+ ..+.+||..+.
T Consensus 250 p~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 250 KHRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SSCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111 1112222 356777777643 45778887665
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.18 E-value=1.7 Score=46.36 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=60.0
Q ss_pred CceEEEEeecCCCEEEEEe--CCeEEEEECCCcc------------------EEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 001159 842 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------------------VMTMFMSPPPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~------------------~~~~~~~h~~~v~~l~~sp~~~~~lasg 901 (1135)
.....++|+|+|.+.++-. ++.=.|--+..+. .+..+..+......++|.. +.++...
T Consensus 202 RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~ 279 (347)
T 3das_A 202 RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAG 279 (347)
T ss_dssp SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEE
T ss_pred CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecc
Confidence 3456889999888766543 3322222222221 1222222223567788874 5666666
Q ss_pred eCCCcEEEEEccccee----eEEecCcCCCeEEEEEcCCCCeEEEEc
Q 001159 902 MEDSSVQIYNVRVDEV----KTKLKGHQNRITGLAFSPTLNALVSSG 944 (1135)
Q Consensus 902 ~~dg~v~iwd~~~~~~----~~~l~~h~~~i~~l~~s~d~~~l~s~~ 944 (1135)
...+.|....+..... ...+.+..+++.+|+..|||.++++.+
T Consensus 280 l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 280 LRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp STTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6667777777765432 223445557899999999998777754
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.04 E-value=2 Score=45.88 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=65.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC---CC
Q 001159 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GL 421 (1135)
Q Consensus 345 h~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd---~~ 421 (1135)
.-...+.++|.|||+ ++++-...|.|++++..+++.... - .+ ..++.........|+|+|+ +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v-----~-------~~-~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL-----G-------EV-PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-----E-------EC-TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee-----c-------cc-CceeecCCCCceeeEeccccccCC
Confidence 345789999999998 677655489999998665543110 0 00 0112334567899999996 34
Q ss_pred eEEEE-e--CCCeEEEEEeCCCC----c---eeeee-Eee-cccCCEEEEEEecCCCeEEEEEEc
Q 001159 422 MLGVA-F--SKHIVHLYTYNPTG----E---LRQHL-EID-AHVGGVNDIAFAHPNKQLCIVTCG 474 (1135)
Q Consensus 422 ~las~-~--~dg~i~iwd~~~~~----~---~~~~~-~l~-~h~~~v~~v~~s~d~~~~~l~s~~ 474 (1135)
+|.+. + .++.|.-|.+..+. . .+.+. .+. +.......|+|.|||. +.++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 44332 2 45567667766521 1 11111 121 1111345799999997 455543
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.00 E-value=0.58 Score=50.02 Aligned_cols=230 Identities=13% Similarity=0.021 Sum_probs=109.4
Q ss_pred eEEEEeCCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcC----CC-------cEEEEEcCCCeee
Q 001159 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQ 490 (1135)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~ 490 (1135)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37889988765322 12221112222333344565 6677773 11 2778888776543
Q ss_pred e--eecCCCCCeeEEEeeccCCccEEEEEEcC-------CeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEec
Q 001159 491 Y--TFEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1135)
Q Consensus 491 ~--~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 561 (1135)
. .+.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.|+.
T Consensus 92 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 2 12111111222222 23667777654 34778887765433221111111111112245666666654
Q ss_pred CCC--CCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCC
Q 001159 562 SKE--GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1135)
Q Consensus 562 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1135)
+.+ ....+.+||+.+.+-...-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 211 134689999988764433221111111222222 45666667643 3577899887654332221111 1
Q ss_pred cceEEEcCCCCEEEEEECC--------------CcEEEEEcCCC
Q 001159 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1135)
Q Consensus 635 v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~ 664 (1135)
....+..-++++++.|+.+ ..+.+||..+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1112222356677777653 35777787665
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.93 E-value=0.53 Score=51.36 Aligned_cols=231 Identities=12% Similarity=0.078 Sum_probs=111.8
Q ss_pred CCCEEEEEe--CCeEEEEECCC--c--cEEEEEeCCCCCe-EEEEEecCCCcEEEEEeC-C---------CcEEEEEccc
Q 001159 852 NDSYVMSAS--GGKVSLFNMMT--F--KVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME-D---------SSVQIYNVRV 914 (1135)
Q Consensus 852 dg~~la~~~--dg~i~vwd~~~--~--~~~~~~~~h~~~v-~~l~~sp~~~~~lasg~~-d---------g~v~iwd~~~ 914 (1135)
++++++.|+ ...+.++|+.+ . +.+..+.. .... .+++.. ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 777777776 46799999864 2 22222220 1111 223332 5678888876 2 4689999887
Q ss_pred cee--eEEecCcCCCeEEEEEcCCCCeEEEEcCC---------------------------------------CcEEEEe
Q 001159 915 DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD---------------------------------------AQLCMWS 953 (1135)
Q Consensus 915 ~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------------------------------~~i~iwd 953 (1135)
.+= +..+. ........+...++++++.|+.+ ..+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 642 22222 01111111222578888888865 4688899
Q ss_pred CCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEE-e------cCeEEEEec--CCceeeccCCCCCCCCCEEEE
Q 001159 954 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H------ESQISVYDS--KLECSRSWSPKDALPAPISSA 1024 (1135)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~------d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~~ 1024 (1135)
..+.+-.. +....... ..-..++. -++++++.+ . ...+.+||+ ....-................
T Consensus 175 ~~~~~W~~---~~~~p~~~---~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSY---AGESPWYG---TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEE---EEECSSCC---CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEE---CCCCCCCC---cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 88755222 11111000 01022222 255665553 2 235677775 333322222111001111222
Q ss_pred EEeeCCCEEEEEeCC----------------------CeEEEEECCCceeeeeeCCceeccccccCCCCccEEEEecCCC
Q 001159 1025 IYSCDGLLVYAGFCD----------------------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1082 (1135)
Q Consensus 1025 ~~s~d~~~l~~~~~d----------------------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1135)
+...++++++.|+.+ ..+.+||+.+.+-... ..+|.. . ....++.+ +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~---r-~~~~~~~~---~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG---R-AYGVSLPW---N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC---C-BSSEEEEE---T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC---c-ccceeEEe---C
Confidence 344577888888742 2578899987654332 111111 1 11223333 5
Q ss_pred CCEEEEEecCC------cEEEEecCCCc
Q 001159 1083 PNQIALGMSDG------AVHVVEPSDAE 1104 (1135)
Q Consensus 1083 ~~~l~sg~~dg------~v~~W~~~~~~ 1104 (1135)
+++++.|+.++ .|.+.++.+.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 67888898764 34555676655
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.90 E-value=0.8 Score=57.45 Aligned_cols=99 Identities=5% Similarity=0.053 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCcceEEEcCCCC
Q 001159 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1135)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 645 (1135)
..+|.+.|+..+..+..-.-. -.+.-++|..+.++.-. ..++.|+|+.+...+....... .|.-=.|-. .+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis-~~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 117 (1630)
T ss_pred CceEEEEECCCCCCccccccc----chhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecC-CC
Confidence 447888998876654222111 12344688777666653 6799999999988887776543 343334433 33
Q ss_pred EEEEEECCCcEEEEEcCCCchhhhhcccc
Q 001159 646 LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1135)
Q Consensus 646 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 674 (1135)
.|+..+. ..|.-|++.....+.+.+..|
T Consensus 118 ~l~lVT~-~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred eeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence 5555544 489999997654555555544
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.87 E-value=2.2 Score=44.86 Aligned_cols=175 Identities=12% Similarity=0.083 Sum_probs=105.0
Q ss_pred EEEeecCCCEEEEEe--C-------------CeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEe----CCCc
Q 001159 846 CIALSKNDSYVMSAS--G-------------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----EDSS 906 (1135)
Q Consensus 846 ~l~~s~dg~~la~~~--d-------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~----~dg~ 906 (1135)
+--++++|.+|+... + ..|+..++...+... +.. .. +..|++ ++++|+... .+..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999998886 2 257888887665322 321 11 236788 677777765 3345
Q ss_pred EEEEEcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcC-CCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECC
Q 001159 907 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 985 (1135)
Q Consensus 907 v~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 985 (1135)
|+.-++... ....+..+.. .+|+++++.|.-.+. ...|..-++..+... .+ ..+. ....++|
T Consensus 131 Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l--~~~~-------~~~~~~P 193 (302)
T 3s25_A 131 LYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LF--YDCN-------CYKPVVL 193 (302)
T ss_dssp EEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EE--ECSC-------EEEEEEE
T ss_pred EEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EE--eCCC-------ccceeee
Confidence 555566533 3445554433 456788988886665 567888888765532 12 1111 1234679
Q ss_pred CCcEEEEEe--c-CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe--CCCeEEEEECCCc
Q 001159 986 DQTHLLVVH--E-SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETL 1050 (1135)
Q Consensus 986 dg~~l~~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~--~dg~I~vwd~~~~ 1050 (1135)
++++|+.+. + ..|..-++.+.....+.. ..+ ..|+|++++|+-++ ..+.|..-+++..
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 999998853 2 356666665555444432 233 34889999887552 3466777777643
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.79 E-value=0.055 Score=52.69 Aligned_cols=144 Identities=13% Similarity=-0.013 Sum_probs=84.0
Q ss_pred CceEEEEeecCCCEEEEEeCCeEEEEECCCccE------EEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001159 842 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV------MTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 913 (1135)
Q Consensus 842 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~--~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~ 913 (1135)
..++.++|+|+|.+.++ .+|.+.-.+..+... -..+- +-. .-.++.|.| +|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~-~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDP-NGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence 35669999999998888 888877777654221 11111 011 137899999 8877776 56999888764
Q ss_pred cceee------EEe-cCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceece----eeeecCCCCCCCCCCceEEE
Q 001159 914 VDEVK------TKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS----RFIQAPAGRQSPLVGETKVQ 982 (1135)
Q Consensus 914 ~~~~~------~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~ 982 (1135)
+...- ..+ ..-=..+..|.|.|+|.+.+.. |+.+.-+...+...... ..+..... ..-..+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~ 188 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLF 188 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEE
Confidence 32111 011 1111457999999999888777 77654333332111000 01110000 1235577
Q ss_pred ECCCCcEEEEEecCeE
Q 001159 983 FHNDQTHLLVVHESQI 998 (1135)
Q Consensus 983 ~s~dg~~l~~~~d~~v 998 (1135)
|.++|.+.++. ++.+
T Consensus 189 f~~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 189 FSSVGTLFGVQ-GGKF 203 (236)
T ss_dssp ECTTSCEEEEE-TTEE
T ss_pred ECCCCcEEEEe-CCeE
Confidence 99999888887 6643
No 343
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.55 E-value=0.012 Score=46.85 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcC
Q 001159 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCG 59 (1135)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1135)
++|+.+-|++||..+||.+++.+|.+|.++..+ ...-..-.++-.|..++++=++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 468999999999999999999999999998875 1223455778888887665433
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.17 Score=54.01 Aligned_cols=200 Identities=8% Similarity=0.024 Sum_probs=106.0
Q ss_pred cEEEEEeCCCcEEEEEcccceeeEEecCc-CCCeEEEEE--c-CCCCeEEEE-cCCCcEEEEeCCCCceeceeeeecCCC
Q 001159 896 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--S-PTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 970 (1135)
Q Consensus 896 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~i~~l~~--s-~d~~~l~s~-~~D~~i~iwd~~~~~~~~~~~~~~~~~ 970 (1135)
.+++.++.||.|+-+|..+|+.+..+... ..++....- . .++..++.. +.||.|..++..+|...-...+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888653 122222110 0 123333333 589999999988775332211111110
Q ss_pred CCCCCCCceE---EEE------CCCCcEEEEEecCeEEEEec-CCceeeccCCCCCCC----CCEEEEEEe-----eCCC
Q 001159 971 RQSPLVGETK---VQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1031 (1135)
Q Consensus 971 ~~~~~~~v~~---~~~------s~dg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~----~~i~~~~~s-----~d~~ 1031 (1135)
. .++.. ... +.++..++.+.++.+...|. +++.+..+....... ....|.... ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 01110 001 24454444478999999999 888887775432110 011111111 1235
Q ss_pred EEEEEeCCCeEEEEECCCceeeeeeCCceeccccccCCCCccEE--EEecCCCCCEEEEEecCCcEEEEecCCCcccc
Q 001159 1032 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV--IAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1107 (1135)
Q Consensus 1032 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~sg~~dg~v~~W~~~~~~~~~ 1107 (1135)
.|+.+..+..+.+.+ .+|+ +..+....+.+.. . ..++. ...+ .|+.+ +.++.||.|.-.|..+|+..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~-~~~~~~~~~~s-~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---L-DVPLALQNTFS-KDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---T-THHHHTTCSSC-SSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc---c-ccccccccccc-cCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 4564 3222211111110 0 00000 0001 14555 457899999999999999888
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.20 E-value=2.5 Score=47.52 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCC--CCCCCCceEEEECCC---CcEEEEE--e---
Q 001159 925 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR--QSPLVGETKVQFHND---QTHLLVV--H--- 994 (1135)
Q Consensus 925 ~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---g~~l~~~--~--- 994 (1135)
-...++|+|.|||+++++-...+.|++++..+++... ........ .........++|+|| +.+|.++ .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3457899999999988876554578888765544221 11111110 011256679999996 5555553 2
Q ss_pred ---------cCeEEEEecCC--------ceee-ccCCCCCCCCCEEEEEEeeCCCEEEEEe
Q 001159 995 ---------ESQISVYDSKL--------ECSR-SWSPKDALPAPISSAIYSCDGLLVYAGF 1037 (1135)
Q Consensus 995 ---------d~~v~vwd~~~--------~~~~-~~~~~~~h~~~i~~~~~s~d~~~l~~~~ 1037 (1135)
...|.-|+.+. +.+. .+.....| ....|+|.|||.++++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEEC
Confidence 23455555421 1111 12222223 478999999999777654
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.03 E-value=1.4 Score=47.06 Aligned_cols=192 Identities=10% Similarity=0.043 Sum_probs=95.9
Q ss_pred eecCCCEEEEEe-C----C-------eEEEEECCCccEEEEEeCCCCC-eEEEEEecCCCcEEEEEeCC-------CcEE
Q 001159 849 LSKNDSYVMSAS-G----G-------KVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMED-------SSVQ 908 (1135)
Q Consensus 849 ~s~dg~~la~~~-d----g-------~i~vwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~lasg~~d-------g~v~ 908 (1135)
...+++.++.|+ . + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 345777777776 1 1 1778888765432211111111 1222322 56788888764 3588
Q ss_pred EEEcccceee--EEecCcCCCeEEEEEcCCCCeEEEEcCC------CcEEEEeCCCCceeceeeeecCCCCCCCCCCceE
Q 001159 909 IYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 980 (1135)
Q Consensus 909 iwd~~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 980 (1135)
+||..+.+-. ..+......-.++. .++++++.|+.+ ..+.++|+.+.+-.. +...... ..-..
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~----r~~~~ 201 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD---LAPMKTP----RSMFG 201 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE---ECCCSSC----CBSCE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE---CCCCCCC----cccce
Confidence 8888876422 22221111111222 467777777642 358899988765221 1111100 11112
Q ss_pred EEECCCCcEEEEE-ec-----CeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC--------------C
Q 001159 981 VQFHNDQTHLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------------G 1040 (1135)
Q Consensus 981 ~~~s~dg~~l~~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d--------------g 1040 (1135)
++. -+++.++.+ .+ ..+.+||.....-..+..... ......+...++++++.|+.+ .
T Consensus 202 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 202 VAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ--ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS--CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC--cccceEEEEECCEEEEECCeeccCCCCceeccceee
Confidence 222 356666664 22 457789984333332222111 111112233567888888764 3
Q ss_pred eEEEEECCCceeee
Q 001159 1041 AIGVFDAETLRFRC 1054 (1135)
Q Consensus 1041 ~I~vwd~~~~~~~~ 1054 (1135)
.+.+||+.+.+-..
T Consensus 279 ~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 279 DIWKYEDDKKEWAG 292 (318)
T ss_dssp CEEEEETTTTEEEE
T ss_pred eEEEEeCCCCEehh
Confidence 58889998876554
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.91 E-value=0.08 Score=51.53 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEccccee------eEEec--CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV------KTKLK--GHQNRITGLAFSPTLNALVSSGADAQLCMWSID 955 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~ 955 (1135)
.++.++|+| ++.+.++ .+|.++-.+..++.. -..+- +-.. -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8887776 677766666544211 11110 1111 478999999998888 56988878764
Q ss_pred CCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEE
Q 001159 956 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 1000 (1135)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~v 1000 (1135)
+.......-.....+.. .-..+..+.|.|+|.+.++. |+.+.-
T Consensus 116 ~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe-CCcEEe
Confidence 32211110000000000 00356899999999999998 887543
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.91 E-value=4.4 Score=42.46 Aligned_cols=180 Identities=8% Similarity=0.052 Sum_probs=101.0
Q ss_pred EEEEecCCCeEEEEEecc-------------ceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEc
Q 001159 351 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1135)
Q Consensus 351 ~v~~sp~g~~lla~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 417 (1135)
+--++++|++|..+...+ ..|+..++..++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999877776543 466767776654321 1111 123678
Q ss_pred CCCCeEEEEe--CC--CeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee
Q 001159 418 PDGLMLGVAF--SK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1135)
Q Consensus 418 pd~~~las~~--~d--g~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 493 (1135)
+++++|+-.. .+ ..|...++++.. .. .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 33 345555665432 22 3333432 467888985 2334334678888887766544333
Q ss_pred cCCCCCeeEEEeeccCCccEEEEEEcCC--eEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEE
Q 001159 494 EGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1135)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1135)
.+ ... ..++|.+ .+|+-...++ .|..-+++.... ..+.. ..+ ..|+|++++|+.+... +...|..
T Consensus 184 ~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCV 250 (302)
T ss_dssp CS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECS--SSCEEEE
T ss_pred CC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECC--CCcEEEE
Confidence 32 222 2355654 5666555433 555556654443 23322 223 3478889999866421 2356777
Q ss_pred EECCC
Q 001159 572 WNESE 576 (1135)
Q Consensus 572 wd~~~ 576 (1135)
-++..
T Consensus 251 ~~~DG 255 (302)
T 3s25_A 251 VKNDG 255 (302)
T ss_dssp EETTS
T ss_pred EECCC
Confidence 77653
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.97 Score=48.08 Aligned_cols=115 Identities=8% Similarity=-0.035 Sum_probs=68.0
Q ss_pred CeEEEEeCCCeEEEEEeCCCCceeeeeEeecc-cCCEEEEEE--ecCCCeEEEEEE-cCCCcEEEEEcCCCeeeeeecC-
Q 001159 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAF--AHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG- 495 (1135)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~v~~v~~--s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~- 495 (1135)
..+++++.||.|.-.|..+|+..- .+... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W---~~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIW---SIEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEE---EECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---EecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 367788888888888888876543 22221 112211110 011222 33333 6899999999888865544321
Q ss_pred ---CCCCeeEEEeeccC-------CccEEEEEEcCCeEEEEeCcCCCceeEecCC
Q 001159 496 ---HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1135)
Q Consensus 496 ---h~~~v~~i~~~~~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 540 (1135)
...++.. .-.|-- .+..+++|+.+|++...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1222221 100100 2368999999999999999999998877654
No 350
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.80 E-value=1.3 Score=48.10 Aligned_cols=192 Identities=5% Similarity=-0.064 Sum_probs=94.2
Q ss_pred CCCEEEEEeC-----------CeEEEEECCCccEEEEEeCC-CCCe-EEEEEecCCCcEEEEEeCC--------------
Q 001159 852 NDSYVMSASG-----------GKVSLFNMMTFKVMTMFMSP-PPAA-TFLAFHPQDNNIIAIGMED-------------- 904 (1135)
Q Consensus 852 dg~~la~~~d-----------g~i~vwd~~~~~~~~~~~~h-~~~v-~~l~~sp~~~~~lasg~~d-------------- 904 (1135)
++++++.|+. ..+.+||..+.+-...-... .... .+++. . ++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhc
Confidence 6666666642 35899998875422211111 2222 22222 3 67888888865
Q ss_pred -------------------------CcEEEEEcccce--eeEEecCcCCCeEEEEEcCCCCeEEEEcCC------CcEEE
Q 001159 905 -------------------------SSVQIYNVRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCM 951 (1135)
Q Consensus 905 -------------------------g~v~iwd~~~~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~i 951 (1135)
..+.+||..+.+ .+..+......-.+++. -++++++.++.+ ..+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEE
Confidence 478999988754 33333211111022222 266777776642 34677
Q ss_pred EeC--CCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEe-c----------------------CeEEEEecCC-
Q 001159 952 WSI--DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------------------SQISVYDSKL- 1005 (1135)
Q Consensus 952 wd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d----------------------~~v~vwd~~~- 1005 (1135)
+|+ .+.+ ...+....... ....+.+...++++++.++ + ..+.+||...
T Consensus 222 ~d~d~~~~~---W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~ 295 (357)
T 2uvk_A 222 LDFTGNNLK---WNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG 295 (357)
T ss_dssp EECC---CE---EEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred EEecCCCCc---EEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence 776 3322 11111111000 1112223344566666642 1 2577899832
Q ss_pred --ceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCC------eEEEEECCCceeeeeeC
Q 001159 1006 --ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG------AIGVFDAETLRFRCRIG 1057 (1135)
Q Consensus 1006 --~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg------~I~vwd~~~~~~~~~~~ 1057 (1135)
..+..+.... ....+...++++++.|+.++ .|.++++++++.+....
T Consensus 296 ~W~~~~~~p~~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 296 KWDKSGELSQGR-----AYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp -CEEEEECSSCC-----BSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred ceeeCCCCCCCc-----ccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 2222222211 11223446888888888653 36667888887775544
No 351
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.64 E-value=11 Score=42.18 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=112.8
Q ss_pred CCCEEEEEe--CCeEEEEECCCccEEEEEeCC-CCCeEEEEEe--cCCCcEEEEEeC-------CCcE---------EEE
Q 001159 852 NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFH--PQDNNIIAIGME-------DSSV---------QIY 910 (1135)
Q Consensus 852 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s--p~~~~~lasg~~-------dg~v---------~iw 910 (1135)
||++|.+-+ +..|...+++..++-+.+.-+ ...+..++|- | ...+++.++. ||.. -+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 889999988 688999999999887776543 4568888886 6 5667776663 2321 111
Q ss_pred ---EcccceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCC---------------cEEEEeCCC-------Cc--eecee
Q 001159 911 ---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA---------------QLCMWSIDK-------WE--KLKSR 963 (1135)
Q Consensus 911 ---d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---------------~i~iwd~~~-------~~--~~~~~ 963 (1135)
|..+.+....+.- .+........++|++.++.+-+. .+.++++.. ++ .+...
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 1222221111110 12233345577788877765331 255555431 11 01100
Q ss_pred eeecCCCCC------------CCCCCceEEEECCCCcEEEEE--ecCeEEEEecC-Cce-----e----eccCCCCCCCC
Q 001159 964 FIQAPAGRQ------------SPLVGETKVQFHNDQTHLLVV--HESQISVYDSK-LEC-----S----RSWSPKDALPA 1019 (1135)
Q Consensus 964 ~~~~~~~~~------------~~~~~v~~~~~s~dg~~l~~~--~d~~v~vwd~~-~~~-----~----~~~~~~~~h~~ 1019 (1135)
-+....+.. ........+.++|||++++++ -+.++.|+|++ ... + ........-.-
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 001111111 000234578899999999996 47889999983 111 0 00000011144
Q ss_pred CEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 1020 PISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 1020 ~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
.....+|.++|.-..+---|..|.-|++...
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 5688999999965566668999999999864
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.74 E-value=14 Score=40.55 Aligned_cols=260 Identities=11% Similarity=-0.004 Sum_probs=118.3
Q ss_pred CCceEEEEeec--CCCEEEEEeCC----eEEEEECCCccEEEEEeC--------------CCCCeEEEEEecCC-CcEEE
Q 001159 841 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFMS--------------PPPAATFLAFHPQD-NNIIA 899 (1135)
Q Consensus 841 ~~~i~~l~~s~--dg~~la~~~dg----~i~vwd~~~~~~~~~~~~--------------h~~~v~~l~~sp~~-~~~la 899 (1135)
...|.++++.| ++.+.+.+..| .|...+ ..++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 56789999998 56666665554 343332 22322222211 11257889998633 44555
Q ss_pred EEeCCCcEEEEEcccceeeEEec---C----------------cCCCeEEEEEcCC-CCeEEEEcCCCcEEEEeCCCCce
Q 001159 900 IGMEDSSVQIYNVRVDEVKTKLK---G----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEK 959 (1135)
Q Consensus 900 sg~~dg~v~iwd~~~~~~~~~l~---~----------------h~~~i~~l~~s~d-~~~l~s~~~D~~i~iwd~~~~~~ 959 (1135)
.++..+.|...+ +.++.-..+. . ....|.+|++.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 566566555443 2222211111 1 1235789999873 34444444344343332 22221
Q ss_pred eceeeeec-CCCCC-C-----CCCCceEEEECCC-CcEEEEEecCeEEEEecCCceeeccCCCCCC--CCCEEEEEEeeC
Q 001159 960 LKSRFIQA-PAGRQ-S-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSCD 1029 (1135)
Q Consensus 960 ~~~~~~~~-~~~~~-~-----~~~~v~~~~~s~d-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h--~~~i~~~~~s~d 1029 (1135)
...+.. ..... . ....+..++++|+ ...|.++..+.|...+-.++....+...... ...+.+++++|.
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCC
Confidence 111110 00000 0 0024788999986 3555555555565554444433333211100 134667888763
Q ss_pred -CCEEEEEeC-----------CCeEEEEECCC-ceeeeeeCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEE
Q 001159 1030 -GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1096 (1135)
Q Consensus 1030 -~~~l~~~~~-----------dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~ 1096 (1135)
...|+++.. ++...+|.... |+.-..+.. .+|....-......+++++|.++..|..++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 334444432 23344555443 333332221 11111000001112466677555667777666654
Q ss_pred EEecCCCccccCC
Q 001159 1097 VVEPSDAELKWGG 1109 (1135)
Q Consensus 1097 ~W~~~~~~~~~~~ 1109 (1135)
|...++...|+.
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444455654
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.33 E-value=23 Score=42.14 Aligned_cols=247 Identities=8% Similarity=0.020 Sum_probs=125.1
Q ss_pred EEE-EecCCCeEEEEEeccc----eEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEE
Q 001159 351 SMD-FHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1135)
Q Consensus 351 ~v~-~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las 425 (1135)
.+. ++|++++++++-|..| .|+++|+.+++.+.. .|. ...+... + .......++|. |++.+..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~-------~--~~~~~~~~~W~-d~~~~~~ 200 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK-------L--LEGKFTYPTWI-NKDTIIF 200 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC-------B--CCEETCCEEEE-ETTEEEE
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc-------c--cccccceeeEE-CCCEEEE
Confidence 444 8899987666655444 799999999987642 111 0000000 0 00012334676 3333333
Q ss_pred Ee-----------CCCeEEEEEeCCCCceeeeeEeecccCCE-EEEEEecCCCe---EEEEEEcC---CCcEEEEEcCC-
Q 001159 426 AF-----------SKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQ---LCIVTCGD---DKMIKVWDVVA- 486 (1135)
Q Consensus 426 ~~-----------~dg~i~iwd~~~~~~~~~~~~l~~h~~~v-~~v~~s~d~~~---~~l~s~~~---d~~i~iwd~~~- 486 (1135)
+. ....|+.|.+.+...-. ...+.+....+ .+...+++++. ..+++.+. ...+.+.|...
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK 279 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence 32 13468888887653211 11344433333 34555677764 13555432 24566666553
Q ss_pred -CeeeeeecCCCCCeeEEEeeccCCccEEEEE----------EcCCeEEEEeCcCCC-------ceeE-ecC-CCCcEEE
Q 001159 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRVD-YDA-PGNWCTM 546 (1135)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~-------~~~~-~~~-~~~~i~~ 546 (1135)
++. ..+...... .+..+. ++.+++.. ...+.|...|+.+.. .... +.. ....+..
T Consensus 280 ~~~~-~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 280 NLKL-QKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp SCEE-EECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred CCcc-eEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 432 223211111 111222 22444422 246778899987631 2222 322 3446778
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCCe-EEEE-eecccCCceeEEEecCCCCEEE-EEe---CCCeEEEEECC
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFL-AAG---DEFQIKFWDMD 618 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~i~~s~~~~~l~-~~~---~dg~i~iwd~~ 618 (1135)
+.+..+ ..+++... ++...|.++|+.++. .... +.......+.....++++..++ +.+ .-+.+..+|+.
T Consensus 355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 888876 34444432 445678899887775 2333 3322222566666777765444 333 44678888887
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.52 E-value=21 Score=39.95 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCC-eEEEEeCCCeEEEEEeCCCCceeeeeEee---------cccCCEEEEEEecC
Q 001159 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP 464 (1135)
Q Consensus 410 ~V~~v~~spd~~-~las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~v~~s~d 464 (1135)
.-..|+|.|||. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 356899999996 56667788999999754321111111111 11456889999996
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.97 E-value=7.1 Score=46.68 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=103.2
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCccEEEEE-e-----CCCC--CeEEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001159 851 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-----SPPP--AATFLAFHPQDNNIIAIGMEDS------SVQIYN 911 (1135)
Q Consensus 851 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~-~-----~h~~--~v~~l~~sp~~~~~lasg~~dg------~v~iwd 911 (1135)
.++..++.|+ + ..+.+||..+.+-...- . .... .-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 45889998876533322 1 1111 223344432 467888887543 588899
Q ss_pred cccce--eeEEecCcCCCeEEEEEcCCCCeEEEEcCCC--cEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCC-
Q 001159 912 VRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND- 986 (1135)
Q Consensus 912 ~~~~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 986 (1135)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+..-. .+...............+++..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~---~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK---DVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEE---ECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceE---EccCCCCCCCcccceeEEEEeCCC
Confidence 88753 222222111111 223324888888888654 6899998876521 11110000000012234555655
Q ss_pred CcEEEEEe---c-----CeEEEEecCCce------eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCC--------CeEEE
Q 001159 987 QTHLLVVH---E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIGV 1044 (1135)
Q Consensus 987 g~~l~~~~---d-----~~v~vwd~~~~~------~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~d--------g~I~v 1044 (1135)
++.++.++ + +.+.+||+.... .............-.+++...++++++.|+.+ ..|.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 55666642 2 458899983222 11110000001111133334448888888753 45999
Q ss_pred EECCCceee
Q 001159 1045 FDAETLRFR 1053 (1135)
Q Consensus 1045 wd~~~~~~~ 1053 (1135)
||+.+.+-.
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999988765
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.41 E-value=13 Score=44.39 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=100.2
Q ss_pred cCCCeEEEEEEcCC----CcEEEEEcCCCeeeeee-c-------CCCCCeeEEEeeccCCccEEEEEEcCC------eEE
Q 001159 463 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-------GHEAPVYSVCPHHKESIQFIFSTAIDG------KIK 524 (1135)
Q Consensus 463 ~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~-------~h~~~v~~i~~~~~~~~~~l~s~s~dg------~i~ 524 (1135)
.++. +++.||.+ ..+.+||+.+++-...- . .......++.+ +. ++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~-~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SR-NNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TT-TTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-cc-CCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 46888898876533221 1 11111222222 10 336777776543 477
Q ss_pred EEeCcCCCceeEecCCCC-cEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEee---cc-cCCceeEEEecCC
Q 001159 525 AWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS---GF-RKRSLGVVQFDTT 599 (1135)
Q Consensus 525 iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~---~~-~~~~v~~i~~s~~ 599 (1135)
+||..+.+-...-..... .-.+++...+++.++.||.+... .+.+||+.+..-...-. .. ......++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 888776433221111111 11223332477888888764433 79999998876543221 11 1112233555555
Q ss_pred -CCEEEEEeC--C-----CeEEEEECCCCce-----EEEEeCC--CCCCCcceEEEcCCCCEEEEEEC--------CCcE
Q 001159 600 -RNRFLAAGD--E-----FQIKFWDMDNMNM-----LTTVDAD--GGLPASPRLRFNKEGSLLAVTTS--------DNGI 656 (1135)
Q Consensus 600 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--------dg~i 656 (1135)
+..++.||. + ..+.+||+.+.+. ...+... ... .-.+++...++++++.|+. ...+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 556666664 2 4688999988762 2222111 111 1123333344777777774 3458
Q ss_pred EEEEcCCC
Q 001159 657 KILANSDG 664 (1135)
Q Consensus 657 ~iwd~~~~ 664 (1135)
.+||..+.
T Consensus 629 ~~yd~~t~ 636 (695)
T 2zwa_A 629 ISLDPLSE 636 (695)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88888766
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.97 E-value=19 Score=37.12 Aligned_cols=183 Identities=13% Similarity=0.033 Sum_probs=95.1
Q ss_pred ceEEEEeecCCCEEEEEeCCeEEEEECCCccEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEec
Q 001159 843 SAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 922 (1135)
Q Consensus 843 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~ 922 (1135)
.|..++...+-. ++. .||.|..|-......+..-..-...|..++... ...+.-. ||.|+.|-....-.+..-.
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 445555433322 222 377777776543211111111124677777764 3344445 9999999765422121111
Q ss_pred CcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEe
Q 001159 923 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1002 (1135)
Q Consensus 923 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd 1002 (1135)
.....|..++...+...+ .. |+.|..|-......+.. .... ...|..++.-.+...++ .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg~---p~~~-----~~~v~~i~~G~~hs~al--~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTTV---PAEA-----QSGVDDVAGGIFHSLAL--KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTSC---CGGG-----GSSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCCC---ceec-----CCCeEEEEecCCEEEEE--ECCeEEEEE
Confidence 223468787765443333 23 79999997765332211 0000 13466666555544444 699999998
Q ss_pred c-CCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 1003 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 1003 ~-~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
. ....+..-.. ....|..++...+..++++ ||.|+.|=....
T Consensus 205 ~n~~gqlg~p~~---~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPTE---ALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCGG---GGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCcc---cCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 7 2222211111 1345777775554443333 999999987653
No 358
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.85 E-value=30 Score=37.68 Aligned_cols=204 Identities=11% Similarity=0.074 Sum_probs=103.1
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-----------eeeEEecCc-CCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-----------EVKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-----------~~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.+..++++. +....+.-+.||.|+.|-.... .....+..- ...|..|+.. ....+....||.|..
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 466677877 6777777889999999964321 111122211 2257777664 344555667999999
Q ss_pred EeCCCCce---------eceeeeecCCCCCCCCCCceEEEECCC-CcEEEEEecCeEEEEec-C-Cce----------ee
Q 001159 952 WSIDKWEK---------LKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLVVHESQISVYDS-K-LEC----------SR 1009 (1135)
Q Consensus 952 wd~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~d~~v~vwd~-~-~~~----------~~ 1009 (1135)
|-.....+ .....+....+ ..+..++.... ...++...++.|..|-. . ++. ..
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~-----~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 257 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQG-----HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM 257 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTT-----SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE
T ss_pred eCCCCCCCcCCCCCcccccceEecccCC-----CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccE
Confidence 97543211 11111222211 23555555442 33445578899999875 1 110 00
Q ss_pred ccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC-Cceecccccc-CCCCccEEEEecCCCCCEEE
Q 001159 1010 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG-PSAYIPTYAV-SNTAHPLVIAPHPSEPNQIA 1087 (1135)
Q Consensus 1010 ~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 1087 (1135)
.+.... ...|..++...+ +.++-..||.|+.|=....-.+..-. .....|.... -....++.++. .....+
T Consensus 258 ~v~~~~--~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~ 330 (389)
T 3kci_A 258 KIDSLT--GLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCV 330 (389)
T ss_dssp ECGGGT--TSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEE
T ss_pred EecccC--CCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEE
Confidence 111111 224666654433 33444689999999865422111000 0000011000 00122333433 334556
Q ss_pred EEecCCcEEEEecCC
Q 001159 1088 LGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1088 sg~~dg~v~~W~~~~ 1102 (1135)
.-..||.|+.|-...
T Consensus 331 al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 331 CCTEDGEVYTWGDND 345 (389)
T ss_dssp EEETTCCEEEEECCT
T ss_pred EECCCCCEEEeeCCC
Confidence 668999999998754
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.57 E-value=24 Score=36.30 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=112.5
Q ss_pred CeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCCCCeEEEEe
Q 001159 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1135)
Q Consensus 348 ~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd~~~las~~ 427 (1135)
.|..++-... +.++. . ||.|..|-......+.. +. .....|..|+...+- .++. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~---------------p~----~~~~~i~~ia~G~~h-s~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM---------------PA----ATQSGVDAIAAGNYH-SLAL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC---------------CG----GGGSCCCEEEECSSE-EEEE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC---------------Cc----cCCCCEEEEEeCCCE-EEEE-E
Confidence 4555554433 33444 4 88999997665433321 00 012246666665433 2333 4
Q ss_pred CCCeEEEEEeCCCCceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeecCCCCCeeEEEeec
Q 001159 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1135)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1135)
||.|..|-.....++.... .-...|..++...+- .+.-. ||.|..|-....-.+-.-......|..++...
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 8999999876544332111 113468777776542 23334 89999998654222211111234577776432
Q ss_pred cCCccEEEEEEcCCeEEEEeCcCCCceeEecCCCCcEEEEEEcCCCCEEEEEecCCCCCCeEEEEECCCCeEEEEeeccc
Q 001159 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1135)
Q Consensus 508 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1135)
. ..++ -. ||.+..|-.......-.-......|..++...+...++ . ++.|+.|-......+. +....
T Consensus 151 ~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg-~p~~~ 217 (282)
T 3qhy_B 151 Y---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTT-VPTEA 217 (282)
T ss_dssp S---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTC-CCGGG
T ss_pred C---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCC-CCccc
Confidence 1 2333 34 79999996654333211111123566665544322222 2 6778888654322111 11111
Q ss_pred CCceeEEEecCCCCEEEEEeCCCeEEEEECCCC
Q 001159 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1135)
Q Consensus 588 ~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1135)
...|..++..... .++-. ||.|+.|-....
T Consensus 218 ~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 218 LSGVSAIASGEWY--SLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GSSCCEEEECSSC--EEEEE-TTEEEEESTTCC
T ss_pred CCCceEEEcCCCE--EEEEE-CCEEEEecCCCC
Confidence 1246666655433 33333 899999976653
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.78 E-value=29 Score=42.97 Aligned_cols=42 Identities=24% Similarity=0.109 Sum_probs=36.6
Q ss_pred CCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCc
Q 001159 1018 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1059 (1135)
Q Consensus 1018 ~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1059 (1135)
...+.+++..++..++++-+.|+++|||++.+++++.+....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 346778888889999999999999999999999999887654
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.86 E-value=48 Score=39.37 Aligned_cols=245 Identities=10% Similarity=0.040 Sum_probs=121.2
Q ss_pred eEEEE-EcCCCCeEEEEe-C----CCeEEEEEeCCCCceeeeeEeecccC------CEEEEEEecCCCeEEEEEE-----
Q 001159 411 VNRCV-WGPDGLMLGVAF-S----KHIVHLYTYNPTGELRQHLEIDAHVG------GVNDIAFAHPNKQLCIVTC----- 473 (1135)
Q Consensus 411 V~~v~-~spd~~~las~~-~----dg~i~iwd~~~~~~~~~~~~l~~h~~------~v~~v~~s~d~~~~~l~s~----- 473 (1135)
...+. ++||+++++.+- . -..++++|+.+++.+..... ..-+. ....++|..++. ++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~ 207 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKN 207 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTT
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCC
Confidence 34455 899999888762 2 23699999999765431111 00000 113358874443 44432
Q ss_pred -----cCCCcEEEEEcCCCe--eeeeecCCCCCee-EEEeeccCCcc---EEEEEEcC---CeEEEEeCcCCCc-eeEec
Q 001159 474 -----GDDKMIKVWDVVAGR--KQYTFEGHEAPVY-SVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLGS-RVDYD 538 (1135)
Q Consensus 474 -----~~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~i~~~~~~~~~---~l~s~s~d---g~i~iwd~~~~~~-~~~~~ 538 (1135)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.|.+.... ...+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN 287 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee
Confidence 123578888876542 2233444333332 23333443222 35554422 3455556543222 23333
Q ss_pred CCCCcEEEEEEcCCCCEEEEEecCC------CCCCeEEEEECCCCe-------EEEE-eecccCCceeEEEecCCCCEEE
Q 001159 539 APGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFL 604 (1135)
Q Consensus 539 ~~~~~i~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~i~~s~~~~~l~ 604 (1135)
...... +..+.++.+++....+. -..+.|...|+.++. ..+. +....+..+..+.+..+ ..++
T Consensus 288 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 333211 23344555555332110 136678888887642 1222 43334446778888865 5666
Q ss_pred EEeCCCe--EEEEECCCCc-eEEE-EeCCCCCCCcceEEEcCCCCE-EEEEEC---CCcEEEEEcC
Q 001159 605 AAGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGSL-LAVTTS---DNGIKILANS 662 (1135)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iwd~~ 662 (1135)
+...++. ++++++.+++ .... +.... ...+.....++++.. +++.+. -+.+..+|..
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666664 6677776664 2233 33322 124555566666543 343333 3556666654
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.83 E-value=54 Score=36.53 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=33.6
Q ss_pred ceeEEEecCCCC-EEEEEeCCCeEEEEECCCC---ceEEEEeCC-------CCCCCcceEEEcCC
Q 001159 590 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM---NMLTTVDAD-------GGLPASPRLRFNKE 643 (1135)
Q Consensus 590 ~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~~~-------~~~~~v~~~~~~~~ 643 (1135)
.-..++|.|+|. +++++...|.|++++.... ..+..+... ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456799999996 5666778899999975432 122222110 01234567888886
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.31 E-value=48 Score=35.57 Aligned_cols=167 Identities=13% Similarity=0.131 Sum_probs=92.8
Q ss_pred cEEEEEcCCC--eeeeeecC------CCCCeeEEEee-c--c--CCccEEE-EEEcCCeEEEEeCcCCCceeEec----C
Q 001159 478 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-H--K--ESIQFIF-STAIDGKIKAWLYDYLGSRVDYD----A 539 (1135)
Q Consensus 478 ~i~iwd~~~~--~~~~~~~~------h~~~v~~i~~~-~--~--~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~----~ 539 (1135)
.|.+||+.++ +.++++.- ....+..+.+. . . .++.+++ +=+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4677888887 77766532 23457788877 2 1 1123443 33457889999998876554331 1
Q ss_pred C--------------CCcEEEEEEcCC----CCEEEEEecCCCCCCeEEEEECC-----C---CeEEEEeecccC--Cce
Q 001159 540 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNES-----E---GAIKRTYSGFRK--RSL 591 (1135)
Q Consensus 540 ~--------------~~~i~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~-----~---~~~~~~~~~~~~--~~v 591 (1135)
. ...+..++++|+ ++.|+...... -++|.+. . ...++.+ +..+ ..-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEe-eecCCCCCc
Confidence 1 136788999998 78887665321 2233222 1 1112222 2221 123
Q ss_pred eEEEec-CCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCcceEEEcCCCCEEEEE
Q 001159 592 GVVQFD-TTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1135)
Q Consensus 592 ~~i~~s-~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 650 (1135)
...+++ .+|..+++--....|..|+..+. +....+........+..+.+..+|.+.+..
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 345675 56766666678889999998751 233343332233455666666665544443
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.19 E-value=58 Score=34.94 Aligned_cols=172 Identities=10% Similarity=0.143 Sum_probs=94.5
Q ss_pred CeEEEEECCCc--cEEEEEeCC------CCCeEEEEEe---cC---CCcEEEEEe-CCCcEEEEEcccceeeEEec----
Q 001159 862 GKVSLFNMMTF--KVMTMFMSP------PPAATFLAFH---PQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKLK---- 922 (1135)
Q Consensus 862 g~i~vwd~~~~--~~~~~~~~h------~~~v~~l~~s---p~---~~~~lasg~-~dg~v~iwd~~~~~~~~~l~---- 922 (1135)
-+|.+||+.+. ++++++.-. ......+++. |. ++.++..+. ..+-|.++|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35778899888 888776532 3357888887 21 134444444 36789999999887554431
Q ss_pred ----------Cc----CCCeEEEEEcCC----CCeEEEEcCCCcEEEEeCCCCceece---eeeecCCCCCCCCCCceEE
Q 001159 923 ----------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKV 981 (1135)
Q Consensus 923 ----------~h----~~~i~~l~~s~d----~~~l~s~~~D~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~ 981 (1135)
|. ...|..|++||+ ++.|.-....+ -++|.+.+.-.... ..++. .|.......-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceE
Confidence 10 136888999998 67776665444 34555443111000 00000 0111000123356
Q ss_pred EEC-CCCcEEEE-EecCeEEEEecCC-c----eeeccCCCCCCCCCEEEEEEeeCCCEEEEE
Q 001159 982 QFH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAG 1036 (1135)
Q Consensus 982 ~~s-~dg~~l~~-~~d~~v~vwd~~~-~----~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~ 1036 (1135)
++. .+|.++++ ...+.|..|+..+ . ....+.... .-.....+++.++|.+.+++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence 675 56766666 4788999999854 1 122222111 23356677776666654444
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=76.57 E-value=89 Score=33.80 Aligned_cols=236 Identities=8% Similarity=-0.011 Sum_probs=108.1
Q ss_pred CcceEEEEEcC--CCCeEEEEeCCC----eEEEEEeCCCCceeeeeE---eec--------ccCCEEEEEEecC--CCeE
Q 001159 408 AISVNRCVWGP--DGLMLGVAFSKH----IVHLYTYNPTGELRQHLE---IDA--------HVGGVNDIAFAHP--NKQL 468 (1135)
Q Consensus 408 ~~~V~~v~~sp--d~~~las~~~dg----~i~iwd~~~~~~~~~~~~---l~~--------h~~~v~~v~~s~d--~~~~ 468 (1135)
...|.+|++.| ++.+.| ++..| .|.. ..+.++....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~-s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFR-SDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEE-ESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEE-eCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35699999999 444444 44444 3332 2233443332211 111 1125788999873 34
Q ss_pred EEEEEcCCCcEEEEEcCCCeeeeeec---C----------------CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCc
Q 001159 469 CIVTCGDDKMIKVWDVVAGRKQYTFE---G----------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1135)
Q Consensus 469 ~l~s~~~d~~i~iwd~~~~~~~~~~~---~----------------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~ 529 (1135)
.+..++..+.|...+ ..|+.-..+. . ....+.+|.++|... ..++.+..++.|... .
T Consensus 130 ~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~-~~l~vg~~~ggl~~s--~ 205 (394)
T 3b7f_A 130 TWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDP-KHLYIGMSSGGVFES--T 205 (394)
T ss_dssp CEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCT-TCEEEEEETBEEEEE--S
T ss_pred EEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCC-CEEEEEECCCCEEEE--C
Confidence 344444455444433 2333222221 0 123577888887543 334444444444333 3
Q ss_pred CCCcee-EecC--C-----------CCcEEEEEEcCC-CCEEEEEecCCCCCCeEEEEECCCCeEEEEeec-ccC---Cc
Q 001159 530 YLGSRV-DYDA--P-----------GNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRK---RS 590 (1135)
Q Consensus 530 ~~~~~~-~~~~--~-----------~~~i~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~---~~ 590 (1135)
...... .+.. . ...+.++++.|+ ...|+++. .+.|+..+-. ++.-..+.. ... ..
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D~-G~tW~~~~~~l~~~~~~~ 279 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDRR-EGVWKRIGDAMPREVGDI 279 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEETT-TTEEECGGGGSCTTTCSC
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCCC-CCcceECCCCCCCCCccc
Confidence 222221 1111 0 134889999886 35566554 2335544422 322222221 111 13
Q ss_pred eeEEEecCC-CCEEEEEeC-----------CCeEEEEECCC-CceEEEEeC--CCCC--C--CcceEEEcCC-CCEEEEE
Q 001159 591 LGVVQFDTT-RNRFLAAGD-----------EFQIKFWDMDN-MNMLTTVDA--DGGL--P--ASPRLRFNKE-GSLLAVT 650 (1135)
Q Consensus 591 v~~i~~s~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~~~~~~~-~~~l~~~ 650 (1135)
+..+.++|. ...++++.. ++...+|.... ++....+.. .... . ....++++|. ...|+.+
T Consensus 280 ~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g 359 (394)
T 3b7f_A 280 GFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFG 359 (394)
T ss_dssp EEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEE
T ss_pred eEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEE
Confidence 556777763 344555432 23344554443 444444421 1100 0 1246888874 4556666
Q ss_pred ECCCcEE
Q 001159 651 TSDNGIK 657 (1135)
Q Consensus 651 ~~dg~i~ 657 (1135)
+.++.|.
T Consensus 360 ~~~g~l~ 366 (394)
T 3b7f_A 360 TTGGEIW 366 (394)
T ss_dssp CTTSCEE
T ss_pred eCCCeEE
Confidence 6555544
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=71.52 E-value=1e+02 Score=32.26 Aligned_cols=159 Identities=9% Similarity=0.045 Sum_probs=91.2
Q ss_pred CCceEEEEeec---CCCEEEEEe-CCeEEEEECCCccEE-------EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 001159 841 EESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVM-------TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 909 (1135)
Q Consensus 841 ~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~~~~~-------~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~i 909 (1135)
...|.++..-+ +..+++..+ +|.++--.+...... ..++. .+.+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 44555554433 567888887 899998887653221 12332 44566665555 5567778889999988
Q ss_pred EEcc--c---------ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceece--eeeecCCCCCCCCC
Q 001159 910 YNVR--V---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS--RFIQAPAGRQSPLV 976 (1135)
Q Consensus 910 wd~~--~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~ 976 (1135)
+.+. . |...-.|. ..+.|.++...+++..++.++..|.++.-.+..-..... .-+....-.. ...
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~-~~d 249 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR-RRG 249 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT-TTC
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC-CCC
Confidence 8776 2 11112233 345688877777777899999999998887664332100 0011111000 012
Q ss_pred CceEEEE-CCCCcEEEEEecCeEEEEec
Q 001159 977 GETKVQF-HNDQTHLLVVHESQISVYDS 1003 (1135)
Q Consensus 977 ~v~~~~~-s~dg~~l~~~~d~~v~vwd~ 1003 (1135)
.+..+.. ..+...++++.+|.+.-+..
T Consensus 250 ~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 250 RLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp SEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred eEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 2333333 34445555577777766665
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.32 E-value=1.2e+02 Score=30.90 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=73.5
Q ss_pred CCceEEEEeec--CCCEEEEEe-CCeEEEEECCCcc------EEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001159 841 EESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFK------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 911 (1135)
Q Consensus 841 ~~~i~~l~~s~--dg~~la~~~-dg~i~vwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd 911 (1135)
...|..+.. + +..+++..+ +|.++-..+.... ....++ ..+.+..+.... +...|+..+..|.+..+.
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 556666644 4 567788887 8999998876542 111222 234566666655 556788889999998887
Q ss_pred ccc---------ceeeEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCCC
Q 001159 912 VRV---------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 956 (1135)
Q Consensus 912 ~~~---------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~ 956 (1135)
... |...-.+.. .+.|.++...+++..++.++..|.++...++.
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 643 112222332 35677776666677888999999999888764
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=64.38 E-value=1.3e+02 Score=30.63 Aligned_cols=203 Identities=10% Similarity=0.037 Sum_probs=107.9
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEE---EEcccceeeEEecCcCCCeEEEEEcC--CCCeEEEEcCCCcEEEEeCCCCc
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQI---YNVRVDEVKTKLKGHQNRITGLAFSP--TLNALVSSGADAQLCMWSIDKWE 958 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~i---wd~~~~~~~~~l~~h~~~i~~l~~s~--d~~~l~s~~~D~~i~iwd~~~~~ 958 (1135)
.+..+.... ....|+.-+.+|.++- |++..+.....+. ....|.++.. + +...++.++.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 444444444 3445555667776654 3333322111133 3556777654 4 56789999999999998876542
Q ss_pred eece--eeeecCCCCCCCCCCceEEEECCCCc-EEEEEecCeEEEEec-CCce-------eeccCCCCCCCCCEEEEEEe
Q 001159 959 KLKS--RFIQAPAGRQSPLVGETKVQFHNDQT-HLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYS 1027 (1135)
Q Consensus 959 ~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~i~~~~~s 1027 (1135)
... .....+.. .+.+..+....... .++.+..|.+..+.. +... +..+.... ...|.++...
T Consensus 102 -~~~~G~~~i~lke----gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~ 174 (276)
T 3no0_A 102 -YKAQGMPIIKLTE----GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK--NDETSGLRIW 174 (276)
T ss_dssp -TCSTTEECSCCCT----TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEE
T ss_pred -hhcCCeEEEecCC----CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC--CCEEEEEEEe
Confidence 111 00111111 13455555544444 444488888877765 2111 11121111 4567777766
Q ss_pred eCCCEEEEEeCCCeEEEEECCCceeeeeeCCc-eeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEE--EecCC
Q 001159 1028 CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS-AYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV--VEPSD 1102 (1135)
Q Consensus 1028 ~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~--W~~~~ 1102 (1135)
+++..++..+..|.++...++......+-... ... ......+.+.... +...++..+.+|.+.. ++.++
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-----~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-----GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-----CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-----cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 77778888899999999987653332211000 000 0112223332222 3346777788888877 77643
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.00 E-value=65 Score=39.87 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCeEEEEcCCCcEEEEeCCCCceeceeee
Q 001159 927 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 965 (1135)
Q Consensus 927 ~i~~l~~s~d~~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 965 (1135)
.+.+++..++..++++.+.|+++|+|++.+++++...-+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 577888888999999999999999999999987766543
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=61.25 E-value=19 Score=42.11 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=30.2
Q ss_pred EEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCC
Q 001159 1021 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1058 (1135)
Q Consensus 1021 i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1058 (1135)
|.++. .+..+|++-+.|.++|+|++.+++++.+...
T Consensus 224 Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44443 4688999999999999999999999988776
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=54.94 E-value=2e+02 Score=29.77 Aligned_cols=235 Identities=10% Similarity=0.035 Sum_probs=114.5
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCceee------eeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC------
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ------HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------ 485 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~~~------~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~------ 485 (1135)
|+...+++.+.+|.|+--.+..-+..+. ...+.. .+.+..+....... .|+..+..|.++-....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 4556788889999988776654211110 001111 22344444444444 45555566766555432
Q ss_pred ---CCeeee---eecCCCCCeeEEEeec-cCCccEEEEEEcCCeEEEEeCcCCCc-----ee--EecCCCCcEEEEEEcC
Q 001159 486 ---AGRKQY---TFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGS-----RV--DYDAPGNWCTMMAYSA 551 (1135)
Q Consensus 486 ---~~~~~~---~~~~h~~~v~~i~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~-----~~--~~~~~~~~i~~~~~s~ 551 (1135)
.|..+. .+. ....|.++.... ..+..+++..+.+|.++.-.+..... .. .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 233222 122 234566554322 12336899999999999987653221 11 12222 3444444434
Q ss_pred CCCEEEEEecCCCCCCeEEEEECCC-------CeEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEEECCCCc---
Q 001159 552 DGTRLFSCGTSKEGESHLVEWNESE-------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--- 621 (1135)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~--- 621 (1135)
+...++..+. .|.+..++... ..-++.+.-..+..|.++....++..+++.+..|.++-.++....
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC
Confidence 4445555543 66666666532 111122222233356566555556678888999999988774321
Q ss_pred ----eEEEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEc
Q 001159 622 ----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1135)
Q Consensus 622 ----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 661 (1135)
-+..+......+.+..+....+...++..+.+|.+.-++.
T Consensus 232 Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 232 RATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred CCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 1122222122223433333233344556666666655554
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=54.19 E-value=2.1e+02 Score=29.84 Aligned_cols=241 Identities=9% Similarity=0.052 Sum_probs=122.7
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccE----EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---------ce
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV---------DE 916 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~---------~~ 916 (1135)
|+..++++.+ +|.|+--.+...+. -..++ ..+.+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 4555666666 78887765542211 11122 234455555554 456777788888877765431 23
Q ss_pred eeEE---ecCcCCCeEEEEEcCC---CCeEEEEcCCCcEEEEeCCCCceec---ee-eeecCCCCCCCCCCceEEEE-CC
Q 001159 917 VKTK---LKGHQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLK---SR-FIQAPAGRQSPLVGETKVQF-HN 985 (1135)
Q Consensus 917 ~~~~---l~~h~~~i~~l~~s~d---~~~l~s~~~D~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~v~~~~~-s~ 985 (1135)
++.. +. ....|.++..-++ +.+++.++.+|.++-..+..-.... .. .+....+ +.+..+.. ..
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 2345666543332 6689999999999999876433211 11 1111111 33444433 34
Q ss_pred CCcEEEEEecCeEEEEec-CCc-------eeeccCCCCCCCCCEEEEEEeeCCC-EEEEEeCCCeEEEEECCCceeeeee
Q 001159 986 DQTHLLVVHESQISVYDS-KLE-------CSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLRFRCRI 1056 (1135)
Q Consensus 986 dg~~l~~~~d~~v~vwd~-~~~-------~~~~~~~~~~h~~~i~~~~~s~d~~-~l~~~~~dg~I~vwd~~~~~~~~~~ 1056 (1135)
+...++.+.+|.+..+.. +-. -+..+.... ...|.++..-+++. .|++.+..|..+..+++......+-
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg 232 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE--GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRA 232 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT--TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTT
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC--CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCC
Confidence 445555688888877776 211 111121111 45677775545455 7888889999888887653222111
Q ss_pred CCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1057 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
......+...-......+++.... +++.++..+..|.+....+++
T Consensus 233 ~kGv~~~~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 233 KRGVVILRELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCEECSCCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred CCCEECeeecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 000000000001111223222222 235666777888877666654
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.27 E-value=9.6 Score=48.62 Aligned_cols=42 Identities=21% Similarity=0.048 Sum_probs=35.2
Q ss_pred CCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeCCce
Q 001159 1019 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1060 (1135)
Q Consensus 1019 ~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1060 (1135)
..+.+++..++..++++-+.|+++|||++.+++++.+.....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 345566777889999999999999999999999998876543
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=50.84 E-value=2.4e+02 Score=29.44 Aligned_cols=194 Identities=9% Similarity=0.051 Sum_probs=100.3
Q ss_pred CCCCeEEEEeCCCeEEEEEeCCCCce-eeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---------CC
Q 001159 418 PDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---------AG 487 (1135)
Q Consensus 418 pd~~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~ 487 (1135)
|+...+++.+.+|.|+--.+..-+.. ..-..+.. .+.+..+....... .|+..+..|.++-.... .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 56677888999999987765421000 00001222 23455555555555 45556667776655542 23
Q ss_pred eeeee---ecCCCCCeeEEEeecc-CCccEEEEEEcCCeEEEEeCcCCC------ceeEecC-CCCcEEEEEEcCCCCEE
Q 001159 488 RKQYT---FEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDA-PGNWCTMMAYSADGTRL 556 (1135)
Q Consensus 488 ~~~~~---~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~-~~~~i~~~~~s~~~~~l 556 (1135)
..+.. +. ....|.++..... .++.+++.++.+|.++.-.+.... ....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 32222 22 2334655543322 223689999999999998775321 1221111 12344444444444455
Q ss_pred EEEecCCCCCCeEEEEECCC-------CeEEEEeecccCCceeEEEecCCCC-EEEEEeCCCeEEEEECCC
Q 001159 557 FSCGTSKEGESHLVEWNESE-------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN 619 (1135)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-------~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~~~~dg~i~iwd~~~ 619 (1135)
+..+. +|.+..++... +.-++-+.-..+..|.++..-+++. .+++.+..|..+..++..
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55543 66676666532 1112222222333455554434444 788888888888877654
No 375
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.27 E-value=72 Score=33.07 Aligned_cols=111 Identities=12% Similarity=0.206 Sum_probs=58.5
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhcccc-ccccCHHHHHHHH
Q 001159 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKV-FSSFNEELFKEIT 116 (1135)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~-~~~~~~~~~~~l~ 116 (1135)
..+|++.|.+|+|.||.+.++.+. .- ++.+++..+|+.+|.+--.- ++.-....-..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~-----------~R---------y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA-----------NR---------YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-----------HH---------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHHH-----------HH---------HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 678999999999999999876651 11 12233444444444332111 1112233344555
Q ss_pred HhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccccccCCCCCchHHHHHHHHHHHHHHHhhCC
Q 001159 117 QLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCK 187 (1135)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~ 187 (1135)
.++.. ..+.. ...-...++.+|.+.+ +.+|++. + ....+++.+++|-...+.
T Consensus 77 ~llve-v~~~~----~~~~~~~~~~rl~~l~-~~~p~~~------------~-~r~~fi~~ai~WS~~~g~ 128 (312)
T 2wpv_A 77 FYLLE-VYDLA----EVKVDDISVARLVRLI-AELDPSE------------P-NLKDVITGMNNWSIKFSE 128 (312)
T ss_dssp HHHHH-HHHHT----TCCCSHHHHHHHHHHH-TTCCTTC------------T-THHHHHHHHHHHHHHTSS
T ss_pred HHHHH-HHHHc----CCCCCHHHHHHHHHHH-HHCCCCC------------c-hHHHHHHHHHHHHhhcCC
Confidence 44442 11111 1112355666666444 4445432 2 357888999999876444
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.01 E-value=69 Score=36.75 Aligned_cols=64 Identities=11% Similarity=0.184 Sum_probs=48.3
Q ss_pred cEEEEEEcCCCCEEEEEecCC--------CCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 543 WCTMMAYSADGTRLFSCGTSK--------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~~--------~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
..-.|+|+|.|+++++--.+. .++..+.+.+..++++.+-+.+..+..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 456789999999666432110 1345677888889999888888888789999999999887764
No 377
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=42.63 E-value=5.1e+02 Score=30.98 Aligned_cols=158 Identities=13% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeccceEEEEEcCCccccccCCceeecccccccchhhhhccCCCcceEEEEEcCC-CCeEE
Q 001159 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1135)
Q Consensus 346 ~~~V~~v~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~spd-~~~la 424 (1135)
...|.+++++|.....+.+++..|.|...+ +.|+. |..-.. ..... .-....|.+|++.|. ...+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~t--------W~~~~~--~~~~~--~~~~~~i~~ia~dp~~~~~i~ 80 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSK--------WIPLND--FIEAQ--DMNIMGTESIALDPNNPDRLY 80 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTE--------EEESCT--TCCGG--GGGGCSEEEEEEETTEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCC--------eeECcc--CCCcc--cccCCceeEEEECCCCCCEEE
Confidence 358999999997544555666666654443 22321 211000 00000 002346999999984 34444
Q ss_pred EEeCCCe----EEEE-EeCCCCceeeeeE-ee--c-cc--CCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCC-Ceeeee
Q 001159 425 VAFSKHI----VHLY-TYNPTGELRQHLE-ID--A-HV--GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYT 492 (1135)
Q Consensus 425 s~~~dg~----i~iw-d~~~~~~~~~~~~-l~--~-h~--~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 492 (1135)
.+..+.. -.|| ..+.|+....... +. + .. ..+..+++.|.... .++.+...+. ||--.+ |+.-..
T Consensus 81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~-~v~~g~~~~g--l~~S~DgG~TW~~ 157 (789)
T 1sqj_A 81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSN-EVWMGTRTEG--IWKSSDRAKTWTN 157 (789)
T ss_dssp EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEE-EEEEECSSSC--EEEESSTTSSCEE
T ss_pred EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCC-EEEEEeccCC--EEEECCCCcccCC
Confidence 4432211 2333 4444544432211 00 0 01 13567888886543 4555553443 333332 332222
Q ss_pred ec------CCCCCeeEEEeeccCCccEEEEEEcC
Q 001159 493 FE------GHEAPVYSVCPHHKESIQFIFSTAID 520 (1135)
Q Consensus 493 ~~------~h~~~v~~i~~~~~~~~~~l~s~s~d 520 (1135)
+. .....+..+.++|... ..++.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~ 190 (789)
T 1sqj_A 158 VTSIPDAFTNGIGYTSVIFDPERN-GTIYASATA 190 (789)
T ss_dssp ETTSCCCCSTTTCEEEEEECTTST-TCEEEEESS
T ss_pred CccCccccCCCCCeEEEEECCCCC-CEEEEEEcC
Confidence 21 1124578888888654 355555544
No 378
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=41.95 E-value=22 Score=28.19 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001159 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1135)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1135)
-+.-||-.||.=.||+-|...|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999986
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=41.22 E-value=3.2e+02 Score=28.17 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=121.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCccEEEE---------EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------
Q 001159 852 NDSYVMSAS-GGKVSLFNMMTFKVMTM---------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------- 914 (1135)
Q Consensus 852 dg~~la~~~-dg~i~vwd~~~~~~~~~---------~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------- 914 (1135)
+..++++.+ +|.|+--.+.+.+..+. ++ ..+.+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445666666 78888777655332211 22 233454554444 456677788888877665431
Q ss_pred --ceeeE---EecCcCCCeEEEEEc---CCCCeEEEEcCCCcEEEEeCCCCceec--eeeeecCCCCCCCCCCceEEEE-
Q 001159 915 --DEVKT---KLKGHQNRITGLAFS---PTLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLVGETKVQF- 983 (1135)
Q Consensus 915 --~~~~~---~l~~h~~~i~~l~~s---~d~~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~- 983 (1135)
|..+. .+. ....|.++..- .++.+++.++.+|.++--.+..-.... ......+... +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~----d~lv~~~~~ 154 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG----DELIGVDLT 154 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT----CCEEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC----CEEEEEEEe
Confidence 22221 122 34456666442 356688999999999998776432211 1111111111 23434333
Q ss_pred CCCCcEEEEEecCeEEEEec-CCce-------eeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeee
Q 001159 984 HNDQTHLLVVHESQISVYDS-KLEC-------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1055 (1135)
Q Consensus 984 s~dg~~l~~~~d~~v~vwd~-~~~~-------~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~ 1055 (1135)
..+...++.+.+|.+..+.. +-.. +..+... ....|.++....++..|++.+..|.++-.+++......+
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 44455566688888777776 2111 1111111 145677776656667788889999999888754322211
Q ss_pred eCCceeccccccCCCCccEEEEecCCCCCEEEEEecCCcEEEEecCC
Q 001159 1056 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~v~~W~~~~ 1102 (1135)
-........ ........+.+.... +...|+..+.+|.+.-..+++
T Consensus 233 g~kG~~~~~-~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIK-VTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSC-CCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeE-ecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 000000000 001112233333322 235566777888877766654
No 380
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=41.11 E-value=3.7e+02 Score=28.95 Aligned_cols=201 Identities=12% Similarity=0.041 Sum_probs=94.8
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-e----------eeEEecCc-CCCeEEEEEcCCCCeEEEEcCCCcEEE
Q 001159 884 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-E----------VKTKLKGH-QNRITGLAFSPTLNALVSSGADAQLCM 951 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~-~----------~~~~l~~h-~~~i~~l~~s~d~~~l~s~~~D~~i~i 951 (1135)
.|..++- +..+.+.-..||.|+.|-.... + ....+... ...|..++... ...+....||.|..
T Consensus 122 ~i~~ia~---G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC---GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA--EHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CEEEEEE---ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC--CeEEEEeCCCCEEE
Confidence 5666665 3455666778999999975421 1 11112211 22577776643 34555568999999
Q ss_pred EeCCCCcee---------ceeeeecCCCCCCCCCCceEEEECCCCcEEEEEecCeEEEEec-CCcee-----------ec
Q 001159 952 WSIDKWEKL---------KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECS-----------RS 1010 (1135)
Q Consensus 952 wd~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~v~vwd~-~~~~~-----------~~ 1010 (1135)
|-......+ ....+....+ ..+..++.... ..++...++.|+.|-. ....+ ..
T Consensus 197 wG~n~~GqlG~g~~~~~~~p~~v~~~~~-----~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 197 WGWGRYGNLGLGDRTDRLVPERVTSTGG-----EKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp EECCTTSTTCSSSSCCEEEEEECCCSTT-----CCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred eeCCCCCCCCCCCCCCcCccEEecccCC-----ceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 965432211 1111111111 22333333222 2233367888888875 11111 00
Q ss_pred cCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCceeeeeeC-Cceeccccc-cCCCCccEEEEecCCCCCEEEE
Q 001159 1011 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG-PSAYIPTYA-VSNTAHPLVIAPHPSEPNQIAL 1088 (1135)
Q Consensus 1011 ~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s 1088 (1135)
+.... ...|..++-. ..+.++-..||.|+.|=....-.+..-. .....|... ......++.++. .....+.
T Consensus 271 v~~~~--~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~a 343 (406)
T 4d9s_A 271 LEALS--NSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLA 343 (406)
T ss_dssp CGGGT--TSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEE
T ss_pred ecccC--CCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEE
Confidence 11011 2346655543 3344444689999999765422111000 000000000 000022333333 3345566
Q ss_pred EecCCcEEEEecCC
Q 001159 1089 GMSDGAVHVVEPSD 1102 (1135)
Q Consensus 1089 g~~dg~v~~W~~~~ 1102 (1135)
-..||.|+.|-...
T Consensus 344 lt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 344 VTERNNVFAWGRGT 357 (406)
T ss_dssp EETTSCEEEEECCT
T ss_pred EeCCCCEEEecCCC
Confidence 67899999997643
No 381
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.43 E-value=3.6e+02 Score=28.64 Aligned_cols=193 Identities=9% Similarity=0.010 Sum_probs=108.9
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCc---------cEEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----
Q 001159 850 SKNDSYVMSAS-GGKVSLFNMMTF---------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----- 914 (1135)
Q Consensus 850 s~dg~~la~~~-dg~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~----- 914 (1135)
-|+..++++.+ +|.|+--.+... ..-..++ ..+.+..+.... ....|+..+..|.++-+....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 35677788887 898887655321 1222233 355666666666 566777788888887665431
Q ss_pred ----ceeeEE---ecCcCCCeEEEEEcC---CCCeEEEEcCCCcEEEEeCCCCceec--eeeeecCCCCCCCCCCceEEE
Q 001159 915 ----DEVKTK---LKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLVGETKVQ 982 (1135)
Q Consensus 915 ----~~~~~~---l~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~ 982 (1135)
|..+.. +. ....|.++..-. ++.+|+.++..|.++...+....... ......+.. ...+..+.
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~----~d~lv~v~ 156 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE----GDALVGVA 156 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT----TCCEEEEE
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC----CCEEEEEE
Confidence 222221 22 245566665432 45689999999999998876533211 111111111 13344444
Q ss_pred E-CCCCcEEEEEecCeEEEEec-CCc-------eeeccCCCCCCCCCEEEEEEee-------------------------
Q 001159 983 F-HNDQTHLLVVHESQISVYDS-KLE-------CSRSWSPKDALPAPISSAIYSC------------------------- 1028 (1135)
Q Consensus 983 ~-s~dg~~l~~~~d~~v~vwd~-~~~-------~~~~~~~~~~h~~~i~~~~~s~------------------------- 1028 (1135)
. ..+...++++.+|.+..+.. .-. -+..+.... ...|.++...+
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~ 234 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK--GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAE 234 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEECCC-----------------------
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC--CCEEEEEEEecccccccccccccccccccccccccc
Confidence 3 33444555577888777765 211 112121111 45666666554
Q ss_pred ----------CCCEEEEEeCCCeEEEEECCCce
Q 001159 1029 ----------DGLLVYAGFCDGAIGVFDAETLR 1051 (1135)
Q Consensus 1029 ----------d~~~l~~~~~dg~I~vwd~~~~~ 1051 (1135)
++..+++.+..|..+...+....
T Consensus 235 ~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 235 PAVIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ------------CEEEEEETTSEEEEEEGGGSC
T ss_pred ccccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45678889999999998887543
No 382
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.67 E-value=44 Score=30.42 Aligned_cols=33 Identities=27% Similarity=0.128 Sum_probs=21.2
Q ss_pred HHHHHhccCHHHHHHHHHhccccccccCHHHHHHH
Q 001159 81 YLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEI 115 (1135)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l 115 (1135)
.-|++..++..+|.+++++--.| .++.+-+.++
T Consensus 16 L~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~ 48 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKELEVP--HFHHELVYEA 48 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHH
Confidence 34677789999999999854334 3344444443
No 383
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=38.16 E-value=3.9e+02 Score=28.37 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=79.0
Q ss_pred EcCCCCeEEEEeCCCeEEEEEeCCC-------CceeeeeEeecccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcC---
Q 001159 416 WGPDGLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--- 485 (1135)
Q Consensus 416 ~spd~~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~--- 485 (1135)
+-|+..++++.+.+|.|+--.+..- +-.. -..+. ....+..+....... .|+..+..|.++-+...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~-~~~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip 78 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRS-AASTK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLP 78 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSE-EEECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCce-ecccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCc
Confidence 3467889999999999997655321 1111 11222 344566666655555 45555667766655432
Q ss_pred ------CCeeeee---ecCCCCCeeEEEeecc-CCccEEEEEEcCCeEEEEeCcCCCc-----ee--EecCCCCcEEEEE
Q 001159 486 ------AGRKQYT---FEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGS-----RV--DYDAPGNWCTMMA 548 (1135)
Q Consensus 486 ------~~~~~~~---~~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~-----~~--~~~~~~~~i~~~~ 548 (1135)
.|..+.. +. ....|.++..... .+..+|+.++..|.++...+..... .. .+.. +..+..+.
T Consensus 79 ~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~ 156 (370)
T 3l6v_A 79 EAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVA 156 (370)
T ss_dssp BCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEE
T ss_pred CCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEE
Confidence 2322222 22 2345665544322 2336899999999999887654221 11 2222 23343444
Q ss_pred EcCCCCEEEEEecCCCCCCeEEEEEC
Q 001159 549 YSADGTRLFSCGTSKEGESHLVEWNE 574 (1135)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1135)
.......++..+. .|.+..++.
T Consensus 157 ~~~~~~~i~l~T~----~G~~irf~~ 178 (370)
T 3l6v_A 157 LTDGDRDVLLFAS----NGKTVRFGE 178 (370)
T ss_dssp EECSCCEEEEEET----TSEEEEEEG
T ss_pred EeCCCceEEEEeC----CCeEEEEEc
Confidence 4344445554443 555655554
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.97 E-value=1.2e+02 Score=34.49 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCEEEEEecC--------CCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 543 WCTMMAYSADGTRLFSCGTS--------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 543 ~i~~~~~s~~~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
....|+|.++|.+.++.-.. ..+...++.++..+|++.+.+.+.....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 56789999999877733110 01234788888888988777766555578999999999988775
No 385
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=37.69 E-value=1.2e+02 Score=31.71 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHHhhcccH---HHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHH
Q 001159 38 MKHFEDQVQAGEW---DEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKE 114 (1135)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~ 114 (1135)
+.+|++.|.+|+| .+|.+.++.+. .+ .+.+.+|-|.++. =.+.|+.+|+. -....-..
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~R-y~~~k~y~eAidL-L~~GA~~ll~~-------~Q~~sg~D 76 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVA----------AR-YSKQGNWAAAVDI-LASVSQTLLRS-------GQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----------HH-HHHTTCHHHHHHH-HHHHHHHHHHT-------TCHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHH----------HH-HHhhcCHHHHHHH-HHHHHHHHHHC-------CCcchHHH
Confidence 6789999999999 99988776551 11 2333333332221 01124445442 12333345
Q ss_pred HHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccccccCCCCCchHHHHHHHHHHHHHHHhhCCC
Q 001159 115 ITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKN 188 (1135)
Q Consensus 115 l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~~~ 188 (1135)
|+.++.. -.++.+ +.-...++.+|.+.+. .+|++. |. ...+++.+++|-.....+
T Consensus 77 L~~llve-vy~~~~----~~~~~~~~~rL~~L~~-~~~~~~------------p~-r~~fi~~ai~WS~~~g~~ 131 (336)
T 3lpz_A 77 LAVLLVD-TFRQAG----QRVDGASRGKLLGCLR-LFQPGE------------PV-RKRFVKEMIDWSKKFGDY 131 (336)
T ss_dssp HHHHHHH-HHHHHT----CCCCHHHHHHHHHHHT-TSCTTC------------HH-HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHH-HHHHcC----CCCCHHHHHHHHHHHH-hCCCCC------------cH-HHHHHHHHHHHHhhcCCC
Confidence 5544442 111111 1123456666666554 344421 33 478999999998764433
No 386
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.28 E-value=67 Score=36.86 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=40.4
Q ss_pred CeEEEEEecCCCcEEEEEeCC------------CcEEEEEcccceeeEEecCc-CCCeEEEEEcCCCCeEEEE
Q 001159 884 AATFLAFHPQDNNIIAIGMED------------SSVQIYNVRVDEVKTKLKGH-QNRITGLAFSPTLNALVSS 943 (1135)
Q Consensus 884 ~v~~l~~sp~~~~~lasg~~d------------g~v~iwd~~~~~~~~~l~~h-~~~i~~l~~s~d~~~l~s~ 943 (1135)
..-.|+|+| .|.+++.-..+ ..+.+.+..+++...-+.++ ..+++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346689999 77755543322 23555666677766666654 4579999999999988765
No 387
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.79 E-value=3.7e+02 Score=27.71 Aligned_cols=192 Identities=9% Similarity=0.084 Sum_probs=107.3
Q ss_pred cCCCEEEEEe-CCeEEEEECCCccEE-------EEEe-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------
Q 001159 851 KNDSYVMSAS-GGKVSLFNMMTFKVM-------TMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------- 914 (1135)
Q Consensus 851 ~dg~~la~~~-dg~i~vwd~~~~~~~-------~~~~-~h~~~v~~l~~sp~~~~~lasg~~dg~v~iwd~~~------- 914 (1135)
++..++++.+ +|.|+--.+...+.. ..+. ...+.+..+.... ....++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3555667666 788887766543221 1111 1234455555554 456777788899887776542
Q ss_pred --ceee---EEecCcCCCeEEEEEcC---CCCeEEEEcCCCcEEEEeCCCCceec--eeeeecCCCCCCCCCCceEEEE-
Q 001159 915 --DEVK---TKLKGHQNRITGLAFSP---TLNALVSSGADAQLCMWSIDKWEKLK--SRFIQAPAGRQSPLVGETKVQF- 983 (1135)
Q Consensus 915 --~~~~---~~l~~h~~~i~~l~~s~---d~~~l~s~~~D~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~- 983 (1135)
|..+ -.+. ..+.|.++...+ ++.+|+.++..|.++...+..-.... ......+.. .+.+..+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~----~d~lv~~~~~ 159 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND----KDFVTSAEIV 159 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT----TCCEEEEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC----CCEEEEEEEe
Confidence 1111 1122 234566654433 46778889999999988876432211 111111111 134444444
Q ss_pred CCCCcEEEEEecCeEEEEec-CCc-------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEEEECCCc
Q 001159 984 HNDQTHLLVVHESQISVYDS-KLE-------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1050 (1135)
Q Consensus 984 s~dg~~l~~~~d~~v~vwd~-~~~-------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~vwd~~~~ 1050 (1135)
.++...++++.+|.+..+.. +.. -+..+.... ...|.++..-.++..|++.+..|..+...++.-
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 44455566688888888876 211 112222211 456777766566677888889999999998754
No 388
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=36.50 E-value=4.3e+02 Score=29.91 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=76.0
Q ss_pred eEEEECCCCcEEEEEecCeEEEEecCCceeeccCCCCCCCCCEEEEEEeeCCCEEEEEe--------------CCCeEEE
Q 001159 979 TKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--------------CDGAIGV 1044 (1135)
Q Consensus 979 ~~~~~s~dg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~--------------~dg~I~v 1044 (1135)
+...-.++|.++.. ....+...|..++.+..+....+....-..+...++|+.|+++. -+..|..
T Consensus 210 ~~~~g~~nG~l~~g-~G~~i~elD~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~E 288 (571)
T 3elq_A 210 MGIRETPRGTFTAV-QGQHWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILE 288 (571)
T ss_dssp EEEEECTTSCEEEE-EBTEEEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEE
T ss_pred EEEEecCCCCEEEe-cCcEEEEECCCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEE
Confidence 44444577776654 33457777777777665433211000012255678888887653 2446777
Q ss_pred EECCCceeeeeeCCceeccccc-----------------------------------------cCCCCccEEEEecCCCC
Q 001159 1045 FDAETLRFRCRIGPSAYIPTYA-----------------------------------------VSNTAHPLVIAPHPSEP 1083 (1135)
Q Consensus 1045 wd~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~ 1083 (1135)
.| .+|+.+.++.....+.... .-...+.-++.+.+.++
T Consensus 289 VD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd 367 (571)
T 3elq_A 289 VD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDD 367 (571)
T ss_dssp EC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTT
T ss_pred EC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCC
Confidence 88 8899988776433321100 01223345777777565
Q ss_pred CEEEEEecCCcEEEEecCCCccccCCCCCC
Q 001159 1084 NQIALGMSDGAVHVVEPSDAELKWGGTPSQ 1113 (1135)
Q Consensus 1084 ~~l~sg~~dg~v~~W~~~~~~~~~~~~~~~ 1113 (1135)
++|+|+=.- .|..-+- +++-.|.+.++.
T Consensus 368 ~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 368 SIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred EEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 677776555 6666665 788888777664
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.31 E-value=1.3e+02 Score=34.15 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCceEEEEeecCCCEEEEEeC-------------CeEEEEECCCccEEEEEeCC-CCCeEEEEEecCCCcEEEEE
Q 001159 841 EESAACIALSKNDSYVMSASG-------------GKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIG 901 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la~~~d-------------g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~lasg 901 (1135)
-.....|+|+++|.+.+..+. ..|..++..++++.+.+.+. ..+++.++|+| |++.|.++
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 355678999999987774431 15777777788877777654 35799999999 77777655
No 390
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=33.63 E-value=4.3e+02 Score=27.48 Aligned_cols=204 Identities=11% Similarity=0.072 Sum_probs=108.9
Q ss_pred CCceEEEEeecCCCEEE-EEeCCeEE---EEECCCc------cEEEEEe--CCCCCeEEEEEecC--CCcEEEEEeCCCc
Q 001159 841 EESAACIALSKNDSYVM-SASGGKVS---LFNMMTF------KVMTMFM--SPPPAATFLAFHPQ--DNNIIAIGMEDSS 906 (1135)
Q Consensus 841 ~~~i~~l~~s~dg~~la-~~~dg~i~---vwd~~~~------~~~~~~~--~h~~~v~~l~~sp~--~~~~lasg~~dg~ 906 (1135)
...+..+........|+ ..+.|.++ +|++... ..+..+- .....|.++..-++ +..++++.+.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 44455555444444444 44467644 4444422 2211111 13445666544431 3678999999999
Q ss_pred EEEEEccccee-------eEEecCcCCCeEEEEEcCCCCeEEEEcCCCcEEEEeCC--CCc----eeceeeeecCCCCCC
Q 001159 907 VQIYNVRVDEV-------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID--KWE----KLKSRFIQAPAGRQS 973 (1135)
Q Consensus 907 v~iwd~~~~~~-------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iwd~~--~~~----~~~~~~~~~~~~~~~ 973 (1135)
++--.+..... ...++. .+.+..+........|+..+..|.+..+... .-. .-.......+.
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~---- 195 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN---- 195 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC----
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC----
Confidence 99988765322 123333 4556666665666778888889988888776 211 00111111111
Q ss_pred CCCCceEEEECCCCcEEEE-EecCeEEEEec-CCc-------eeeccCCCCCCCCCEEEEEEeeCCCEEEEEeCCCeEEE
Q 001159 974 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLE-------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1044 (1135)
Q Consensus 974 ~~~~v~~~~~s~dg~~l~~-~~d~~v~vwd~-~~~-------~~~~~~~~~~h~~~i~~~~~s~d~~~l~~~~~dg~I~v 1044 (1135)
....|..+...+++.+++. +..|.++.-.+ ... -+..+..... ...+..+....+...++..+.+|.+.-
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 1144666655555544444 77888877665 211 1222221110 234555554445556666778888888
Q ss_pred EECCCc
Q 001159 1045 FDAETL 1050 (1135)
Q Consensus 1045 wd~~~~ 1050 (1135)
++++.-
T Consensus 275 ~~~~~i 280 (327)
T 3uc1_A 275 TAARQV 280 (327)
T ss_dssp EEGGGS
T ss_pred Eehhhc
Confidence 877653
No 391
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.33 E-value=1.1e+02 Score=35.70 Aligned_cols=36 Identities=6% Similarity=0.143 Sum_probs=29.4
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceeeEEecC
Q 001159 885 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 923 (1135)
Q Consensus 885 v~~l~~sp~~~~~lasg~~dg~v~iwd~~~~~~~~~l~~ 923 (1135)
|.++.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555554 457999999999999999999998877654
No 392
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=32.21 E-value=58 Score=28.65 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHhhhhcch-HHHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHhcCCCcc--cccchhHHHHHHH---
Q 001159 3 SLSRELVFLILQFLDEEKF-KETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKV--EDNRYSMKIFFEI--- 76 (1135)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~-~~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~l~~~--~~~~~~~~~~~~i--- 76 (1135)
...+++...|+..|.+.|| +.+.+.+.++-|+..+ ++..|++.++.|.+. -..++..-+..-+
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 3456788999999999998 4556666666665443 233455555555432 1122222111111
Q ss_pred ------HHHHHHH-HHhccCHH-HHHHHHHhccccc
Q 001159 77 ------RKQKYLE-ALDRQDRA-KAVEILVKDLKVF 104 (1135)
Q Consensus 77 ------~~~~~lE-ll~~~~~~-~A~~~l~~~~~~~ 104 (1135)
.-..+|| +|..+++. +|+.++| .|.|.
T Consensus 88 ~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 88 YPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred chhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 1225677 88777744 4677776 44444
No 393
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=30.84 E-value=7.5e+02 Score=29.47 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=73.4
Q ss_pred CcceEEEEEcCC-CCeEEEEeCCCeEEEEEeCCCCceeeeeEeec----ccCCEEEEEEecCCCeEEEEEEcC-C--CcE
Q 001159 408 AISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA----HVGGVNDIAFAHPNKQLCIVTCGD-D--KMI 479 (1135)
Q Consensus 408 ~~~V~~v~~spd-~~~las~~~dg~i~iwd~~~~~~~~~~~~l~~----h~~~v~~v~~s~d~~~~~l~s~~~-d--~~i 479 (1135)
.+.|.+|+++|. ...+.+++..+.|...+ +.++.......... ....|.+|++.|.....+++..+. . ..-
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999995 35566666666554443 34444432211000 124699999998543323333332 2 002
Q ss_pred EEEEc-CCCeeeeeecC---------CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCcee-Eec------CCCC
Q 001159 480 KVWDV-VAGRKQYTFEG---------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYD------APGN 542 (1135)
Q Consensus 480 ~iwd~-~~~~~~~~~~~---------h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~------~~~~ 542 (1135)
.||-- ..|+.-..+.. ....+..++++|... ..++.+...+. +|......... ... ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~-~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS-NEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE-EEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC-CEEEEEeccCC--EEEECCCCcccCCCccCccccCCCC
Confidence 34432 33332222211 011356788887643 46666654443 34333333222 221 1124
Q ss_pred cEEEEEEcCC-CCEEEEEe
Q 001159 543 WCTMMAYSAD-GTRLFSCG 560 (1135)
Q Consensus 543 ~i~~~~~s~~-~~~l~~~~ 560 (1135)
.+..+.+.|. +..++++.
T Consensus 170 ~~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASA 188 (789)
T ss_dssp CEEEEEECTTSTTCEEEEE
T ss_pred CeEEEEECCCCCCEEEEEE
Confidence 5788889884 44555554
No 394
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=29.25 E-value=5.5e+02 Score=27.34 Aligned_cols=229 Identities=10% Similarity=0.127 Sum_probs=114.0
Q ss_pred CCeEEEEeCCCeEEEEEeCCCCce--------eeeeEeec-ccCCEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCC-e-
Q 001159 420 GLMLGVAFSKHIVHLYTYNPTGEL--------RQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R- 488 (1135)
Q Consensus 420 ~~~las~~~dg~i~iwd~~~~~~~--------~~~~~l~~-h~~~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~- 488 (1135)
....+.-..||.|..|-.....++ .....+.. ....+..++.+.-.. ..+.-..||.|+.|-.... +
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~--h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK--HCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS--EEEEEETTSCEEEEECCGGGTT
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC--eEEEEcCCCCEEEEeCCCCCcC
Confidence 445555567888888865432111 11111111 122355566665555 4555667999999964321 0
Q ss_pred ---------eeeeecC-CCCCeeEEEeeccCCccEEEEEEcCCeEEEEeCcCCCc-----------eeEe-cCCCCcEEE
Q 001159 489 ---------KQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDY-DAPGNWCTM 546 (1135)
Q Consensus 489 ---------~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~-~~~~~~i~~ 546 (1135)
....+.. ....|..++... ...+....||.|..|-...... ...+ ......|..
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~G~----~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ 215 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAAGG----AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVD 215 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEECS----SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEeCc----CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEE
Confidence 1111111 122566665422 4566677899999995432111 1111 112335666
Q ss_pred EEEcCCCCEEEEEecCCCCCCeEEEEECCCC-----------eEEEEeecccCCceeEEEecCCCCEEEEEeCCCeEEEE
Q 001159 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615 (1135)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~iw 615 (1135)
++......+.++.. .++.|+.|-.... .....+.......|..++.. ..+.++-..+|.|+.|
T Consensus 216 ia~G~g~~~t~~l~----~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~w 289 (389)
T 3kci_A 216 IACGSGDAQTLCLT----DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTW 289 (389)
T ss_dssp EEECCSSCEEEEEE----TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred EEEcCCCcEEEEEc----cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEE
Confidence 66544223333333 2778888864321 11222222222235555554 3455666789999999
Q ss_pred ECCCCc--------eE---EEEeCCCCCCCcceEEEcCCCCEEEEEECCCcEEEEEcCC
Q 001159 616 DMDNMN--------ML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1135)
Q Consensus 616 d~~~~~--------~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 663 (1135)
-....- .. ..+..... ..|..++.. ....+....||.|..|-...
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~-~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQG-KKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTT-CCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCC-CCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 764311 11 11111111 134444443 34555567899999997654
No 395
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.16 E-value=31 Score=19.89 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=11.2
Q ss_pred chHHHHHHHHHhhhh
Q 001159 4 LSRELVFLILQFLDE 18 (1135)
Q Consensus 4 ~~~~~~~li~q~L~~ 18 (1135)
.=+||++||-||-..
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 347899999888654
No 396
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=28.36 E-value=6.8e+02 Score=28.20 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred CCeEEEEeecccCCceeEEEecCCC--CEEEEEeCCC----eEEEEECCCCceEEEEeCCCCCCCcceEEEcCC
Q 001159 576 EGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEF----QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1135)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~i~~s~~~--~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 643 (1135)
.|+.+......+...+....|.|+. -.++.+.+++ -..+.|..+++.+................|.|+
T Consensus 351 dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 351 DGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp TSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTT
T ss_pred CCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCC
Confidence 3555554433333367777888874 4666665541 355689999999888765433323333334443
No 397
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.82 E-value=1.2e+02 Score=38.58 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=31.2
Q ss_pred CEEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeeec
Q 001159 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1135)
Q Consensus 455 ~v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 494 (1135)
.+.+++..++.. ++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~--~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYN--VLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTT--EEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCcc--EEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566677777 88999999999999999999988753
No 398
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=24.98 E-value=40 Score=27.09 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.3
Q ss_pred CCcchHHHHHHHHHhhhhc
Q 001159 1 MSSLSRELVFLILQFLDEE 19 (1135)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~ 19 (1135)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6777899999999999864
No 399
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=24.18 E-value=2.6e+02 Score=23.76 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=48.6
Q ss_pred HhhhhcchHHHHHHHHHhcCCCcc-HHHH----HHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHHHHhcc
Q 001159 14 QFLDEEKFKETVHKLEQESGFFFN-MKHF----EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQ 88 (1135)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-~~~~----~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~ 88 (1135)
.|++..-|.++.+.+++=-.+..+ ...+ .-....|+|++|+..+...-.+.... .. . |.-.-.. +...|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-a-~~~lg~~---~~~~~ 95 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK-G-YIRKAAC---LVAMR 95 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH---HHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH-H-HHHHHHH---HHHCC
Confidence 455555677777777654333222 1111 22345688888887776643332221 11 1 1111222 23457
Q ss_pred CHHHHHHHHHhccccccccCHHHHHHHHHh
Q 001159 89 DRAKAVEILVKDLKVFSSFNEELFKEITQL 118 (1135)
Q Consensus 89 ~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1135)
+..+|+..+++.++-- -.+.+-...|..+
T Consensus 96 ~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 96 EWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 8888888887654321 1244444445444
No 400
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.27 E-value=5e+02 Score=26.16 Aligned_cols=85 Identities=15% Similarity=0.043 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhhcc-hHHHHHHHHH--hcCCCcc---HHHH--HHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHH
Q 001159 6 RELVFLILQFLDEEK-FKETVHKLEQ--ESGFFFN---MKHF--EDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIR 77 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~~---~~~~--~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~ 77 (1135)
-+.++++.+++...| +.++.+.|++ +.++..+ ...+ .-....|++++|+..+.. +.. .. + +...
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~--~~-~-~~~l 136 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDS--LE-C-MAMT 136 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCS--HH-H-HHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCC--HH-H-HHHH
Confidence 456777888888887 7777777776 3333222 2122 234567999999988877 111 11 1 1111
Q ss_pred HHHHHHHHhccCHHHHHHHHHhcc
Q 001159 78 KQKYLEALDRQDRAKAVEILVKDL 101 (1135)
Q Consensus 78 ~~~~lEll~~~~~~~A~~~l~~~~ 101 (1135)
-+. ++..|+..+|+..+++-+
T Consensus 137 ~~~---~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 137 VQI---LLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHH---HHHCCCHHHHHHHHHHHH
Confidence 222 345688888888887643
No 401
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=22.82 E-value=3.3e+02 Score=22.57 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHhcCCCcc-HH----HHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHH
Q 001159 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN-MK----HFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1135)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~~----~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 81 (1135)
....+-..++...-|.++...+++=.....+ .. .-.-....|+|++|+..+.......... .. + +..+-..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~-~~~la~~- 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IK-G-YTRKAAA- 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hH-H-HHHHHHH-
Confidence 4455566666666788888888775554432 11 1122356789999888877653332221 11 1 1111222
Q ss_pred HHHHhccCHHHHHHHHHhccc
Q 001159 82 LEALDRQDRAKAVEILVKDLK 102 (1135)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~ 102 (1135)
+...|+..+|+..+++.+.
T Consensus 94 --~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 --LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp --HHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHHH
Confidence 2356888888888886543
No 402
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=22.77 E-value=52 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc
Q 001159 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1135)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1135)
.++.+-|+++|++.| .|+..|.+|-|+.-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 467888899999999 899999999998774
No 403
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.39 E-value=2.7e+02 Score=28.24 Aligned_cols=104 Identities=9% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHHHHHhh-hhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcCCCcccccchhHHHHHHHHHHHHHH
Q 001159 7 ELVFLILQFL-DEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLE 83 (1135)
Q Consensus 7 ~~~~li~q~L-~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lE 83 (1135)
++..++.+.+ ...-|.++...|++ +-..+ ...-.-....|++++|+..+..+....... ..+.+ -..++.
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l-~~a~~~ 174 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQL-ATAWVS 174 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHH-HHHHHH
Confidence 3433443444 44448888888887 22233 222233456799999999988864433221 11111 122333
Q ss_pred HH-hccCHHHHHHHHHhccccccccCHHHHHHHHHh
Q 001159 84 AL-DRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118 (1135)
Q Consensus 84 ll-~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l 118 (1135)
++ ..|+.++|+.++++-+... ..+..-+..+..+
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~ 209 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAAC 209 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 32 3477888888888765433 2244444444443
No 404
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=20.82 E-value=9.3e+02 Score=27.12 Aligned_cols=186 Identities=11% Similarity=-0.002 Sum_probs=94.5
Q ss_pred EEEEEEecCCCeEEEEEEcCCCcEEEEEcCCCeeeeee-cCCCCCeeEEEeeccCCccEEEEEEcCC----eEEEEeCcC
Q 001159 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDY 530 (1135)
Q Consensus 456 v~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg----~i~iwd~~~ 530 (1135)
..-..+.-||+. -|+.|+ .+.| .+|+.+... .+|...+....|.|+..|..++.+..++ -..+.|..+
T Consensus 328 ~~vaDVDgDG~d-EIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 328 LSIADVDGDGKD-EIIFGS-----MAVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CEEECCSSSSSC-EEEETT-----EEEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CeeEeCCCCCCc-eEEEee-----eEEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 334455566665 344444 1334 455555443 3788888888899987777888877652 344578777
Q ss_pred CCceeEecCC--CCcEEEEEEcCCCC--EEEEEecCCCCCCeEEEEECCCCeEEEEeecccCCceeEEEecCCCCEEEEE
Q 001159 531 LGSRVDYDAP--GNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1135)
Q Consensus 531 ~~~~~~~~~~--~~~i~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~ 606 (1135)
++.+...... .+......|.|+.. .+.+ . -.+++. +|+.+.... ....-..+-|..|...-+.-
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~--------~~l~~~-~G~~i~~~~--p~~~N~~i~WdGDl~relld 468 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N--------GSLYSA-KGVKIGSGV--PSSTNFGIWWDGDLLREQLD 468 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T--------TEEECT-TSCBCSSCC--CSCCSEEECCSSSSSCEEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe-c--------CceECC-CCCEecCCC--CCCcceeEEECCCCcHhhhC
Confidence 7777665432 23333333444422 1222 0 024443 334333210 11112346777776333332
Q ss_pred eCCCeEEEEECCCCceEEEEeCCC-------CCCCcceEEEcCCCC-EEEEE-ECCCcEEEEEcC
Q 001159 607 GDEFQIKFWDMDNMNMLTTVDADG-------GLPASPRLRFNKEGS-LLAVT-TSDNGIKILANS 662 (1135)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~ 662 (1135)
.+.|.-|+...++....+.... ...+.....+--|.+ -++.. .++..++||...
T Consensus 469 --~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 469 --SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp --TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred --CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 2478889988776444443321 111222223333322 34434 445679999763
No 405
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.15 E-value=3.2e+02 Score=23.77 Aligned_cols=23 Identities=22% Similarity=-0.060 Sum_probs=17.2
Q ss_pred HHHHHhccCHHHHHHHHHhcccc
Q 001159 81 YLEALDRQDRAKAVEILVKDLKV 103 (1135)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~~~~ 103 (1135)
.-|++..|+..+|.+++++--.|
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHcCCCHHHHHHHHHHhCCC
Confidence 34677789999999999864334
Done!